Diff of the two buildlogs: -- --- b1/build.log 2024-02-03 00:16:28.712032320 +0000 +++ b2/build.log 2024-02-03 01:35:56.097746306 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Feb 2 11:36:26 -12 2024 -I: pbuilder-time-stamp: 1706916986 +I: Current time: Fri Mar 7 20:39:46 +14 2025 +I: pbuilder-time-stamp: 1741329586 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: copying [./gromacs_2020.6-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.vxeNi1tm/trustedkeys.kbx': General error +gpgv: keyblock resource '/tmp/dpkg-verify-sig.FjCWR8t8/trustedkeys.kbx': General error gpgv: Signature made Mon Mar 29 05:23:05 2021 gpgv: using RSA key 843E5FA61E6063389876D2E5EE4AFD69EC65108F gpgv: issuer "nbreen@debian.org" @@ -39,49 +39,80 @@ dpkg-source: info: applying mpi-tests-localhost.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/463863/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/934917/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 7 06:39 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/934917/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/934917/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=12 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='70036b5390c9482fb8eda779c9a098fa' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='463863' - PS1='# ' - PS2='> ' + INVOCATION_ID=30b18a718ec64bd3a16d718fb52aa901 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=934917 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RLViRSCN/pbuilderrc_TTTJ --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RLViRSCN/b1 --logfile b1/build.log gromacs_2020.6-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.104:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RLViRSCN/pbuilderrc_ywIe --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RLViRSCN/b2 --logfile b2/build.log gromacs_2020.6-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.104:3128 I: uname -a - Linux codethink04-arm64 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Mar 27 2022 bash @@ -141,7 +172,7 @@ -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jan 7 09:23 sh -> dash + lrwxrwxrwx 1 root root 9 Mar 7 06:39 sh -> /bin/bash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Jan 20 2022 su @@ -167,7 +198,7 @@ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew -I: user script /srv/workspace/pbuilder/463863/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/934917/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -528,7 +559,7 @@ Get: 275 http://deb.debian.org/debian bullseye/main arm64 texlive-latex-recommended all 2020.20210202-3 [14.5 MB] Get: 276 http://deb.debian.org/debian bullseye/main arm64 texlive-pictures all 2020.20210202-3 [6743 kB] Get: 277 http://deb.debian.org/debian bullseye/main arm64 texlive-latex-extra all 2020.20210202-3 [13.7 MB] -Fetched 233 MB in 3s (88.3 MB/s) +Fetched 233 MB in 2s (132 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17734 files and directories currently installed.) @@ -1420,8 +1451,8 @@ Setting up tzdata (2021a-1+deb11u10) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Feb 2 23:37:09 UTC 2024. -Universal Time is now: Fri Feb 2 23:37:09 UTC 2024. +Local time is now: Fri Mar 7 06:41:23 UTC 2025. +Universal Time is now: Fri Mar 7 06:41:23 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgts-0.7-5:arm64 (0.7.6+darcs121130-4+b1) ... @@ -1737,7 +1768,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gromacs-2020.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gromacs_2020.6-2_source.changes +I: user script /srv/workspace/pbuilder/934917/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/934917/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gromacs-2020.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gromacs_2020.6-2_source.changes dpkg-buildpackage: info: source package gromacs dpkg-buildpackage: info: source version 2020.6-2 dpkg-buildpackage: info: source distribution unstable @@ -3206,187 +3241,187 @@ /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +Scanning dependencies of target release-version-info +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= -Scanning dependencies of target release-version-info +Scanning dependencies of target scanner Scanning dependencies of target lmfit_objlib -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build -Scanning dependencies of target vmddlopen -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -Scanning dependencies of target scanner -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -Scanning dependencies of target linearalgebra -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/vmd_molfile/vmddlopen.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -Scanning dependencies of target tng_io_obj Scanning dependencies of target thread_mpi make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp -Scanning dependencies of target mdrun_objlib -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp +Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +Scanning dependencies of target linearalgebra +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -Scanning dependencies of target view_objlib make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp +[ 0%] Built target release-version-info +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= +Scanning dependencies of target vmddlopen make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -Scanning dependencies of target modularsimulator +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/vmd_molfile/vmddlopen.cpp +Scanning dependencies of target modularsimulator make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c 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-I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/sparsematrix.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 6%] Built target view_objlib cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem 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CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/vrescalethermostat.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 5%] Built target scanner +[ 8%] Built target linearalgebra make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 8%] Built target thread_mpi +[ 8%] Built target scanner make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' [ 10%] Built target tng_io_obj make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' @@ -4164,30 +4199,30 @@ make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' [ 98%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend -/usr/bin/make -f 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -std=c++14 -o CMakeFiles/template.dir/template.cpp.o -c /build/reproducible-path/gromacs-2020.6/share/template/template.cpp +/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build Scanning dependencies of target gmxapi make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmx.dir/gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/gmx.cpp +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/exceptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/exceptions.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/gmxapi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/gmxapi.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/md.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/md.cpp @@ -4201,10 +4236,10 @@ cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/tpr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tpr.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmx.dir/gmx.cpp.o CMakeFiles/gmx.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o CMakeFiles/view_objlib.dir/view/3dview.cpp.o CMakeFiles/view_objlib.dir/view/buttons.cpp.o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o CMakeFiles/view_objlib.dir/view/filter.cpp.o CMakeFiles/view_objlib.dir/view/logo.cpp.o CMakeFiles/view_objlib.dir/view/manager.cpp.o CMakeFiles/view_objlib.dir/view/molps.cpp.o CMakeFiles/view_objlib.dir/view/nleg.cpp.o CMakeFiles/view_objlib.dir/view/nmol.cpp.o CMakeFiles/view_objlib.dir/view/popup.cpp.o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o CMakeFiles/view_objlib.dir/view/view.cpp.o CMakeFiles/view_objlib.dir/view/x11.cpp.o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o CMakeFiles/view_objlib.dir/view/xmb.cpp.o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -o ../../bin/gmx ../../lib/libgromacs.so.5.0.0 /usr/lib/aarch64-linux-gnu/libX11.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so -cd /build/reproducible-path/gromacs-2020.6/build/basic/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/template.dir/template.cpp.o -o ../../bin/template ../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' [ 98%] Built target gmx +cd /build/reproducible-path/gromacs-2020.6/build/basic/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/template.dir/template.cpp.o -o ../../bin/template ../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' [ 98%] Built target template cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi.dir/link.txt --verbose=1 @@ -4222,187 +4257,187 @@ /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +Scanning dependencies of target release-version-info +Scanning dependencies of target scanner make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= -Scanning dependencies of target release-version-info -Scanning dependencies of target lmfit_objlib -Scanning dependencies of target vmddlopen make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +Scanning dependencies of target lmfit_objlib make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -Scanning dependencies of target scanner -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio && /usr/bin/c++ -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/vmd_molfile/vmddlopen.cpp -Scanning dependencies of target mdrun_objlib -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' Scanning dependencies of target linearalgebra make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp +Scanning dependencies of target thread_mpi Scanning dependencies of target tng_io_obj +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -Scanning dependencies of target thread_mpi make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +Scanning dependencies of target modularsimulator +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +Scanning dependencies of target vmddlopen +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp +Scanning dependencies of target mdrun_objlib +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/checkpointhelper.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio && /usr/bin/c++ -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/vmd_molfile/vmddlopen.cpp +[ 0%] Built target release-version-info make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target view_objlib make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build -Scanning dependencies of target modularsimulator -[ 0%] Built target release-version-info make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/3dview.cpp -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/checkpointhelper.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' [ 0%] Built target vmddlopen cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/buttons.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/lock.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/dialogs.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/fgrid.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 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/build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/widemuldiv.c +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc2.c +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc3.c +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/forceelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/tng_io.c +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/modularsimulator.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 0%] Built target linearalgebra +[ 1%] Built target view_objlib cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/propagator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/md5.c cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/shellfcelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/signallers.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 1%] Built target view_objlib cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/statepropagatordata.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/topologyholder.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 1%] Built target linearalgebra cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/trajectoryelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/vrescalethermostat.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 3%] Built target scanner +[ 5%] Built target thread_mpi +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/vrescalethermostat.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 6%] Built target thread_mpi +[ 6%] Built target scanner make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' [ 8%] Built target tng_io_obj make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' @@ -5180,8 +5215,8 @@ make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' [ 98%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend -/usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/CMakeFiles/gmxapi.dir/DependInfo.cmake --color= @@ -5190,10 +5225,10 @@ /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmx.dir/gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/gmx.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmx.dir/legacymodules.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/legacymodules.cpp Scanning dependencies of target gmxapi make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmx.dir/legacymodules.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/legacymodules.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/context.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/context.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/exceptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/exceptions.cpp @@ -5229,94 +5264,94 @@ /usr/bin/make -f CMakeFiles/Makefile2 CMakeFiles/tests.dir/all make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend -/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/external/googletest/googlemock/gtest /build/reproducible-path/gromacs-2020.6/build/basic/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +[ 0%] Built target scanner make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +[ 0%] Built target lmfit_objlib make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 0%] Built target release-version-info +[ 2%] Built target thread_mpi +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +[ 3%] Built target tng_io_obj +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend +make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/external/googletest/googlemock/gtest /build/reproducible-path/gromacs-2020.6/build/basic/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build +make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 4%] Built target linearalgebra Scanning dependencies of target gtest +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[4]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build -[ 2%] Built target thread_mpi make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/external/googletest/googlemock/gtest && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CREATE_SHARED_LIBRARY=1 -Dgtest_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -I/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=c++14 -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/src/gtest-all.cc -[ 2%] Built target scanner -[ 2%] Built target lmfit_objlib -[ 4%] Built target linearalgebra -[ 4%] Built target tng_io_obj +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend [ 5%] Built target modularsimulator +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' [ 5%] Built target vmddlopen -[ 5%] Built target release-version-info +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' [ 7%] Built target mdrun_objlib make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= @@ -5387,140 +5422,161 @@ make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' [ 69%] Built target testutils /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/depend -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= +Scanning dependencies of target testutils-mpi-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build +Scanning dependencies of target mdrun_test_infrastructure +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/mpitest.cpp +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build +Scanning dependencies of target testutils-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/energyreader.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/interactivetest.cpp Scanning dependencies of target utility-mpi-test +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/energycomparison.cpp +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build -Scanning dependencies of target testutils-mpi-test -Scanning dependencies of target onlinehelp-test-shared +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/moduletest.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp +Scanning dependencies of target mdlib-test +Scanning dependencies of target applied_forces-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp +Scanning dependencies of target onlinehelp-test-shared +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build +Scanning dependencies of target utility-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build -Scanning dependencies of target testutils-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -Scanning dependencies of target mdrun_test_infrastructure -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/alignedallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/arrayref.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 69%] Built target testutils-mpi-test +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/mpitest.cpp -Scanning dependencies of target applied_forces-test +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mdmodulenotification.cpp Scanning dependencies of target domdec-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/hashedmap.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/terminationhelper.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 69%] Built target utility-mpi-test +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/interactivetest.cpp -/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build -Scanning dependencies of target fft-test -/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= +Scanning dependencies of target ewald-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/testasserts_tests.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/energyreader.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmebsplinetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constr.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingoptions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectorycomparison.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectoryreader.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o +/usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build +[ 69%] Built target onlinehelp-test-shared +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/hashedmap.cpp -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build -Scanning dependencies of target mdlib-test -Scanning dependencies of target gpu_utils-test +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= +Scanning dependencies of target fft-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests/fft.cpp +Scanning dependencies of target gpu_utils-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build -Scanning dependencies of target utility-test +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/gputest.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -Scanning dependencies of target ewald-test -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/alignedallocator.cpp -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmebsplinetest.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/clfftinitializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/energycomparison.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/hostallocator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constr.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 69%] Built target utility-mpi-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/xvgtest_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 Scanning dependencies of target hardware-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../lib/libgtest.so -lpthread make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests/hardwaretopology.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 69%] Built target testutils-mpi-test +[ 69%] Built target domdec-test /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp Scanning dependencies of target math-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/arrayrefwithpadding.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingoptions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -/usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 69%] Built target onlinehelp-test-shared +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= @@ -5529,40 +5585,33 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 69%] Built target fft-test +[ 70%] Built target testutils-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp /usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= +[ 70%] Built target fft-test +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdspan-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/accessor_policy.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/moduletest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 69%] Built target domdec-test -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Scanning dependencies of target onlinehelp-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpformat.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extents.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -P CMakeFiles/mdrun_test_infrastructure.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun_test_infrastructure.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libmdrun_test_infrastructure.a CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o +/usr/bin/ranlib ../../../../lib/libmdrun_test_infrastructure.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 70%] Built target hardware-test +[ 70%] Built target mdrun_test_infrastructure /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= @@ -5571,72 +5620,65 @@ /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/abstractoptionstorage.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mdmodulenotification.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -/usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask32.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extents.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 70%] Built target mdrunutility-test-shared +[ 71%] Built target hardware-test /usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpmanager.cpp Scanning dependencies of target pbcutil-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbc.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/arrayref.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/testasserts_tests.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extensions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbcenums.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/terminationhelper.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/coordinatetransformation.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o +/usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 70%] Built target pbcutil-test +[ 71%] Built target mdrunutility-test-shared /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectorycomparison.cpp Scanning dependencies of target random-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/exponentialdistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/electricfield.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/layouts.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extensions.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestrunners.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/xvgtest_tests.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbcenums.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/electricfield.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask64.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/ebin.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 70%] Built target onlinehelp-test +[ 71%] Built target pbcutil-test /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/restraint/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp Scanning dependencies of target restraintpotential-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/restraint/tests/manager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/mdspan.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfit.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/gammadistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/coordinatetransformation.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/layouts.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 71%] Built target testutils-test +[ 71%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= @@ -5645,27 +5687,29 @@ /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests/splinetable.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/energyoutput.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/gammadistribution.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/energyoutput.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask128.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 -[ 72%] Built target applied_forces-test +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/mdspan.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 71%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread Scanning dependencies of target taskassignment-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests/usergpuids.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectoryreader.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoption.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 72%] Built target restraintpotential-test +[ 72%] Built target applied_forces-test /usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= @@ -5674,12 +5718,23 @@ /usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/exclusionblocks.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -P CMakeFiles/mdrun_test_infrastructure.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun_test_infrastructure.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libmdrun_test_infrastructure.a CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o -/usr/bin/ranlib ../../../../lib/libmdrun_test_infrastructure.a +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoption.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/normaldistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/mtop.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfit.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/cstringutil.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoptionmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/symtab.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/defaultinitializationallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/seed.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/expanded.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/enumerationhelpers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 72%] Built target mdrun_test_infrastructure +[ 72%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= @@ -5688,31 +5743,26 @@ /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests/pull.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/normaldistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/mtop.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/dofit.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/symtab.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoptionmanager.cpp -[ 72%] Built target gpu_utils-test +[ 72%] Built target taskassignment-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' Scanning dependencies of target awh-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build -[ 72%] Built target pull-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/bias.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/fixedcapacityvector.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 74%] Built target topology-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= @@ -5721,16 +5771,11 @@ /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/bootstrap_loadstore.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/seed.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/exponentialmovingaverage.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/expanded.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/base.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/dofit.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 72%] Built target taskassignment-test +[ 74%] Built target pull-test /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= @@ -5739,50 +5784,59 @@ /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-unused-member-function -o CMakeFiles/compat-test.dir/optional.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/optional.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/functions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/inmemoryserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrog.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/exponentialmovingaverage.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/base.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/option.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/biasstate.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreeserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 74%] Built target topology-test +[ 74%] Built target table-test /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/optionsassigner.cpp Scanning dependencies of target gmxana-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/entropy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/entropy.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestdata.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_traj.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrog.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/functions.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmetestcommon.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/option.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/biasstate.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/optionsassigner.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_mindist.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/grid.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint.cpp /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -[ 74%] Built target table-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_mindist.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 74%] Built target mdspan-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformintdistribution.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/DependInfo.cmake --color= Scanning dependencies of target pdb2gmx3-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/gausstransform.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=0 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settle.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 74%] Built target mdspan-test +[ 74%] Built target awh-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/DependInfo.cmake --color= @@ -5792,43 +5846,47 @@ make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_msd.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/grid.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/gausstransform.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformrealdistribution.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' [ 74%] Built target ewald-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp Scanning dependencies of target pdb2gmx1-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformintdistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/logger.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/mutex.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' [ 75%] Built target gmxana-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp Scanning dependencies of target gmxpreprocess-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/editconf.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=0 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx3-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/string_view.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 75%] Built target awh-test +[ 75%] Built target pdb2gmx3-test /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake --color= @@ -5837,18 +5895,18 @@ /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/autocorr.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settle.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/string_view.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=0 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformrealdistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/repeatingsection.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx3-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast 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CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestrunners.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx2-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx2-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfittingforce.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 75%] Built target pdb2gmx3-test +[ 76%] Built target random-test /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= @@ -5858,7 +5916,7 @@ make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/datatest.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 76%] Built target pdb2gmx2-test +[ 77%] Built target pdb2gmx2-test /usr/bin/make -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/DependInfo.cmake --color= @@ -5867,15 +5925,15 @@ /usr/bin/make -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/builder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/builder.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/shake.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx1-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/correlationdataset.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfittingforce.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/expfit.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genconf.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/path.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 77%] Built target random-test +[ 77%] Built target pdb2gmx1-test /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/energyanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake --color= @@ -5884,20 +5942,18 @@ /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/energyanalysis/tests/legacyenergy.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/expfit.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/mock_datamodule.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/repeatingsection.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/treesupport.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/simulationsignal.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genion.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask32.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security 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CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/mock_datamodule.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx1-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 77%] Built target pdb2gmx1-test +[ 78%] Built target energyanalysis-test /usr/bin/make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/dump.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/dump.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genrestr.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem 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/build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/matrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator.cpp +cd 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/build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/stringutil.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/requirements.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/requirements.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_math.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 78%] Built target energyanalysis-test +[ 78%] Built target correlations-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroups.cpp Scanning dependencies of target fileio-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/confio.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/report_methods.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/report_methods.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroupscog.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setatoms.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/trjconv.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/filemd5.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/multidimarray.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o +/usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 78%] Built target correlations-test +[ 78%] Built target analysisdata-test-shared /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= @@ -5934,26 +6008,9 @@ /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/indexutil.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/report_methods.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/report_methods.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestrunners.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/outputadapters.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/shake.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask64.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/trjconv.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/filemd5.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/multidimarray.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/simulationsignal.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/nbsearch.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/timeunitmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/insert_molecules.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 78%] Built target compat-test +[ 80%] Built target options-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/DependInfo.cmake --color= @@ -5962,70 +6019,41 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/densityfittingmodule.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask128.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd 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CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroups.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/paddedvector.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include 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CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/expanded.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcserializer.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 78%] Built target tool-test +[ 80%] Built target compat-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/DependInfo.cmake --color= +[ 81%] Built target mdlib-test +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun-tpi-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o -c 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/build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mimic.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-tpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/enumerationhelpers.cpp -[ 78%] Built target mdrun-tpi-test -/usr/bin/make -f 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'/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/readinp.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mimic.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/insert_molecules.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/orires.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/orires.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/expanded.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectioncollection.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/tool-test.dir/dump.cpp.o CMakeFiles/tool-test.dir/report_methods.cpp.o CMakeFiles/tool-test.dir/trjconv.cpp.o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/tool-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -[ 80%] Built target gmxpreprocess-test +[ 81%] Built target tool-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/DependInfo.cmake --color= @@ -6034,9 +6062,30 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/compressed_x_output.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setatoms.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/pmetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/readir.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymap.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/nbsearch.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-modules-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/outputfiles.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 81%] Built target mdlib-test +[ 81%] Built target mdrun-modules-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/vectypes.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectory_writing.cpp +cd 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/build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_memory.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/solvate.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem 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/build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textreader.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-tpi-test.dir/link.txt --verbose=1 +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/simulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/simulator.cpp +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-tpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 81%] Built target mdrun-tpi-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake --color= @@ -6045,15 +6094,15 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/minimize.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/pmetest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_floatingpoint.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/fixedcapacityvector.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-modules-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-modules-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/topdirs.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setbothtime.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setstarttime.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/fileioxdrserializer.cpp -[ 81%] Built target mdrun-modules-test +[ 82%] Built target gmxpreprocess-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake --color= @@ -6062,35 +6111,32 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/domain_decomposition.cpp -cd 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setbothtime.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/inmemoryserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/settimestep.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/testmodule.cpp +cd 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/build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/readinp.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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/build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/fileioxdrserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/tngio.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-output-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-output-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_integer.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 82%] Built target options-test +[ 83%] Built target mdrun-output-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/tngio.cpp Scanning dependencies of target mdrun-io-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/helpwriting.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/exactcontinuation.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_math.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/simulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/simulator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/outputfiles.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setstarttime.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_util.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/coordinateio-test.dir/builder.cpp.o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o CMakeFiles/coordinateio-test.dir/requirements.cpp.o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/coordinateio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 83%] Built target fileio-test +[ 84%] Built target coordinateio-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/DependInfo.cmake --color= @@ -6099,26 +6145,8 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/periodicactions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreeserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/settimestep.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/nonbonded_bench.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/testmodule.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_math.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/normalmodes.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectory_writing.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/grompp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/grompp.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mimic.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/multisim.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/swapcoords.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/vectypes.cpp -[ 84%] Built target coordinateio-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp /usr/bin/make -f src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/DependInfo.cmake --color= @@ -6127,13 +6155,12 @@ /usr/bin/make -f src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/restraint.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/initialconstraints.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-output-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-output-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/swapcoords.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 85%] Built target mdrun-output-test +[ 85%] Built target fileio-test /usr/bin/make -f src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/DependInfo.cmake --color= @@ -6142,28 +6169,38 @@ /usr/bin/make -f src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/restraint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/restraint.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectioncollection.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/nonbonded_bench.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textwriter.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/normalmodes.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/status.cpp +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-test.dir/dispersion_correction.cpp.o CMakeFiles/mdrun-test.dir/orires.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/simulator.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/rerun.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/typetraits.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 87%] Built target simd-test +[ 85%] Built target mdrun-test /usr/bin/make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp Scanning dependencies of target workflow-details-mpi-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests/workflow.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectionoption.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-coordination-test.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/status.cpp -/usr/bin/c++ -g -O2 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/pmetest.cpp -cd 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CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem 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-I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/system.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/system.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/system.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o 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../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mimic.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/version.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 87%] Built target mdrun-mpi-coordination-test +[ 88%] Built target utility-test /usr/bin/make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/DependInfo.cmake --color= @@ -6172,50 +6209,46 @@ /usr/bin/make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/workflow.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests/workflow.cpp -cd 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/system.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/status.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/status.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/replicaexchange.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/version.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/version.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/simple_mdrun.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-test.dir/dispersion_correction.cpp.o CMakeFiles/mdrun-test.dir/orires.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/simulator.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/multisim.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/runner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-mpi-test.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/system.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/system.cpp /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-mpi-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 87%] Built target mdrun-test +[ 88%] Built target workflow-details-mpi-test /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-coordination-test.dir/link.txt --verbose=1 make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/version.cpp +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-coordination-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread Scanning dependencies of target commandline-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/grompp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/grompp.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 87%] Built target workflow-details-mpi-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/runner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/runner.cpp +[ 88%] Built target mdrun-mpi-coordination-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrunutility-mpi-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/termination.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/termination.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/mutex.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_vector_operations.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/version.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/version.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/initialconstraints.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/workflow-details-test.dir/workflow.cpp.o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 88%] Built target math-test +[ 89%] Built target workflow-details-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= @@ -6224,6 +6257,17 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_math.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/multisimtest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/stopsignaler.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/pmetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-non-integrator-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 90%] Built target math-test /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake --color= @@ -6232,112 +6276,103 @@ /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/analysisdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/stopsignaler.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 -[ 89%] Built target workflow-details-test -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +[ 90%] Built target mdrun-non-integrator-test /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp Scanning dependencies of target trajectoryanalysis-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/moduletest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/runner.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 90%] Built target mdrun-mpi-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/simple_mdrun.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/runner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/runner.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" 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-I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/path.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-io-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a 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/build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/stopsignaler.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator.cpp [ 90%] Built target mdrunutility-mpi-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/stringutil.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 91%] Built target mdrun-io-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textreader.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/stopsignaler.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxapi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-test.dir/status.cpp.o CMakeFiles/gmxapi-test.dir/system.cpp.o CMakeFiles/gmxapi-test.dir/version.cpp.o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-test.dir/runner.cpp.o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textwriter.cpp -[ 92%] Built target mdrunutility-test cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/angle.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/typetraits.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-non-integrator-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 92%] Built target mdrun-non-integrator-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/toputils.cpp +[ 90%] Built target gmxapi-mpi-test cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/convert_trj.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/distance.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 91%] Built target mdrunutility-test cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 92%] Built target gmxapi-mpi-test +[ 92%] Built target gmxapi-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineparser.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 94%] Built target mdrun-mpi-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/distance.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/extract_cluster.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectionoption.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_util.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/pairdist.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxapi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-test.dir/status.cpp.o CMakeFiles/gmxapi-test.dir/system.cpp.o CMakeFiles/gmxapi-test.dir/version.cpp.o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-test.dir/runner.cpp.o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/filenm.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/rdf.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 94%] Built target gmxapi-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineparser.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/sasa.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-io-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o CMakeFiles/mdrun-io-test.dir/grompp.cpp.o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-io-test.dir/termination.cpp.o 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/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/trajectory.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 95%] Built target selection-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp +[ 95%] Built target mdrun-io-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/trajectory.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/pargs.cpp +cd 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CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/histogram.cpp cd 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CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/lifetime.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security 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CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 97%] Built target utility-test cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 98%] Built target commandline-test +[ 96%] Built target commandline-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 97%] Built target simd-test cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/trajectoryanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[100%] Built target trajectoryanalysis-test +[ 98%] Built target trajectoryanalysis-test cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[100%] Built target analysisdata-test +[ 98%] Built target analysisdata-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[100%] Built target selection-test /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/CMakeFiles/tests.dir/DependInfo.cmake --color= @@ -6373,30 +6408,30 @@ 1: [----------] Global test environment set-up. 1: [----------] 10 tests from InteractiveTestHelperTest 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession -1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (1 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (0 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput 1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) -1: [----------] 10 tests from InteractiveTestHelperTest (4 ms total) +1: [----------] 10 tests from InteractiveTestHelperTest (1 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData -1: [ OK ] ReferenceDataTest.HandlesSimpleData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesSimpleData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData 1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks @@ -6404,7 +6439,7 @@ 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData 1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData -1: [ OK ] ReferenceDataTest.HandlesVectorData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData @@ -6412,9 +6447,9 @@ 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData 1: [ OK ] ReferenceDataTest.HandlesIncorrectData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType -1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (1 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData -1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesMissingData (8 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData 1: [ OK ] ReferenceDataTest.HandlesUncheckedData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence @@ -6422,9 +6457,9 @@ 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesAnys -1: [ OK ] ReferenceDataTest.HandlesAnys (0 ms) +1: [ OK ] ReferenceDataTest.HandlesAnys (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree -1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (1 ms) +1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey @@ -6436,7 +6471,7 @@ 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings -1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (1 ms) +1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace 1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings @@ -6454,7 +6489,7 @@ 1: [ RUN ] ReferenceDataTest.HandlesReadingValues 1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges @@ -6463,7 +6498,7 @@ 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) -1: [----------] 34 tests from ReferenceDataTest (6 ms total) +1: [----------] 34 tests from ReferenceDataTest (11 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues @@ -6473,14 +6508,14 @@ 1: [ RUN ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign 1: [ OK ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero -1: [ OK ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero (1 ms) +1: [ OK ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferences 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferences (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesNaN 1: [ OK ] FloatingPointDifferenceTest.HandlesNaN (0 ms) -1: [----------] 7 tests from FloatingPointDifferenceTest (1 ms total) +1: [----------] 7 tests from FloatingPointDifferenceTest (0 ms total) 1: 1: [----------] 4 tests from FloatingPointToleranceTest 1: [ RUN ] FloatingPointToleranceTest.UlpTolerance @@ -6497,17 +6532,17 @@ 1: [ RUN ] XvgTests.CreateFile 1: [ OK ] XvgTests.CreateFile (0 ms) 1: [ RUN ] XvgTests.CheckMissing -1: [ OK ] XvgTests.CheckMissing (0 ms) +1: [ OK ] XvgTests.CheckMissing (1 ms) 1: [ RUN ] XvgTests.CheckExtra -1: [ OK ] XvgTests.CheckExtra (1 ms) +1: [ OK ] XvgTests.CheckExtra (0 ms) 1: [ RUN ] XvgTests.ReadIncorrect 1: [ OK ] XvgTests.ReadIncorrect (0 ms) 1: [----------] 4 tests from XvgTests (1 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (12 ms total) +1: [==========] 59 tests from 5 test cases ran. (13 ms total) 1: [ PASSED ] 59 tests. - 1/54 Test #1: TestUtilsUnitTests .................. Passed 0.04 sec + 1/54 Test #1: TestUtilsUnitTests .................. Passed 0.06 sec test 2 Start 2: TestUtilsMpiUnitTests @@ -6517,13 +6552,13 @@ 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs -2: [ OK ] MpiSelfTest.Runs (1 ms) -2: [----------] 1 test from MpiSelfTest (1 ms total) +2: [ OK ] MpiSelfTest.Runs (23 ms) +2: [----------] 1 test from MpiSelfTest (23 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 1 test from 1 test case ran. (1 ms total) +2: [==========] 1 test from 1 test case ran. (23 ms total) 2: [ PASSED ] 1 test. - 2/54 Test #2: TestUtilsMpiUnitTests ............... Passed 0.02 sec + 2/54 Test #2: TestUtilsMpiUnitTests ............... Passed 0.05 sec test 3 Start 3: UtilityUnitTests @@ -6561,14 +6596,14 @@ 3: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 3: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment -3: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (1 ms) +3: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 3: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/2.Move 3: [ OK ] AllocatorTest/2.Move (0 ms) 3: [ RUN ] AllocatorTest/2.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/2.StatelessAllocatorUsesNoMemory (0 ms) -3: [----------] 5 tests from AllocatorTest/2 (1 ms total) +3: [----------] 5 tests from AllocatorTest/2 (0 ms total) 3: 3: [----------] 5 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 3: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment @@ -6594,7 +6629,7 @@ 3: [ OK ] AllocatorTest/4.Move (0 ms) 3: [ RUN ] AllocatorTest/4.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/4.StatelessAllocatorUsesNoMemory (0 ms) -3: [----------] 5 tests from AllocatorTest/4 (0 ms total) +3: [----------] 5 tests from AllocatorTest/4 (4 ms total) 3: 3: [----------] 5 tests from AllocatorTest/5, where TypeParam = gmx::Allocator, gmx::PageAlignedAllocationPolicy> 3: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment @@ -6643,7 +6678,7 @@ 3: [ OK ] ArrayRefTest/0.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/0 (1 ms total) +3: [----------] 9 tests from ArrayRefTest/0 (0 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/1, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/1.MakeWithAssignmentWorks @@ -6685,7 +6720,7 @@ 3: [ OK ] ArrayRefTest/2.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/2 (0 ms total) +3: [----------] 9 tests from ArrayRefTest/2 (1 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/3.MakeWithAssignmentWorks @@ -6911,12 +6946,12 @@ 3: [ RUN ] ArrayRefTest/13.ConstructFromNonConstPointersWorks 3: [ OK ] ArrayRefTest/13.ConstructFromNonConstPointersWorks (0 ms) 3: [ RUN ] ArrayRefTest/13.ConstructFromVectorWorks -3: [ OK ] ArrayRefTest/13.ConstructFromVectorWorks (1 ms) +3: [ OK ] ArrayRefTest/13.ConstructFromVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/13.ConstructFromNonConstVectorWorks 3: [ OK ] ArrayRefTest/13.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/13 (1 ms total) +3: [----------] 9 tests from ArrayRefTest/13 (0 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/14, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/14.MakeWithAssignmentWorks @@ -7101,7 +7136,7 @@ 3: [ OK ] InMemorySerializerTest.DeserializerExplicitEndianessSwap (0 ms) 3: [ RUN ] InMemorySerializerTest.SizeIsCorrect 3: [ OK ] InMemorySerializerTest.SizeIsCorrect (0 ms) -3: [----------] 5 tests from InMemorySerializerTest (1 ms total) +3: [----------] 5 tests from InMemorySerializerTest (0 ms total) 3: 3: [----------] 4 tests from KeyValueTreeSerializerTest 3: [ RUN ] KeyValueTreeSerializerTest.EmptyTree @@ -7112,13 +7147,13 @@ 3: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) 3: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects 3: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) -3: [----------] 4 tests from KeyValueTreeSerializerTest (0 ms total) +3: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) 3: 3: [----------] 6 tests from TreeValueTransformTest 3: [ RUN ] TreeValueTransformTest.SimpleTransforms 3: [ OK ] TreeValueTransformTest.SimpleTransforms (0 ms) 3: [ RUN ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive -3: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (1 ms) +3: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (0 ms) 3: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject 3: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (0 ms) 3: [ RUN ] TreeValueTransformTest.ObjectFromString @@ -7127,12 +7162,12 @@ 3: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 3: [ RUN ] TreeValueTransformTest.ScopedTransformRules 3: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) -3: [----------] 6 tests from TreeValueTransformTest (1 ms total) +3: [----------] 6 tests from TreeValueTransformTest (0 ms total) 3: 3: [----------] 1 test from TreeValueTransformErrorTest 3: [ RUN ] TreeValueTransformErrorTest.ConversionError -3: [ OK ] TreeValueTransformErrorTest.ConversionError (1 ms) -3: [----------] 1 test from TreeValueTransformErrorTest (1 ms total) +3: [ OK ] TreeValueTransformErrorTest.ConversionError (0 ms) +3: [----------] 1 test from TreeValueTransformErrorTest (0 ms total) 3: 3: [----------] 7 tests from LoggerTest 3: [ RUN ] LoggerTest.EmptyLoggerWorks @@ -7164,19 +7199,19 @@ 3: 3: [----------] 3 tests from MutexTaskTest 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock -3: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (0 ms) +3: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (13 ms) 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread -3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms) +3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (16 ms) 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) -3: [----------] 3 tests from MutexTaskTest (0 ms total) +3: [----------] 3 tests from MutexTaskTest (29 ms total) 3: 3: [----------] 2 tests from PathTest 3: [ RUN ] PathTest.StripSourcePrefixWorks 3: [ OK ] PathTest.StripSourcePrefixWorks (0 ms) 3: [ RUN ] PathTest.SearchOperationsWork -3: [ OK ] PathTest.SearchOperationsWork (1 ms) -3: [----------] 2 tests from PathTest (1 ms total) +3: [ OK ] PathTest.SearchOperationsWork (0 ms) +3: [----------] 2 tests from PathTest (0 ms total) 3: 3: [----------] 2 tests from PhysicalNodeCommunicatorTest 3: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct @@ -7195,7 +7230,7 @@ 3: [ RUN ] StringUtilityTest.StripString 3: [ OK ] StringUtilityTest.StripString (0 ms) 3: [ RUN ] StringUtilityTest.SplitString -3: [ OK ] StringUtilityTest.SplitString (0 ms) +3: [ OK ] StringUtilityTest.SplitString (1 ms) 3: [ RUN ] StringUtilityTest.SplitDelimitedString 3: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) 3: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString @@ -7204,7 +7239,7 @@ 3: [ OK ] StringUtilityTest.CanCompareCaseInsensitive (0 ms) 3: [ RUN ] StringUtilityTest.CanCompareCaseInsensitiveInLength 3: [ OK ] StringUtilityTest.CanCompareCaseInsensitiveInLength (0 ms) -3: [----------] 9 tests from StringUtilityTest (0 ms total) +3: [----------] 9 tests from StringUtilityTest (1 ms total) 3: 3: [----------] 2 tests from FormatStringTest 3: [ RUN ] FormatStringTest.HandlesBasicFormatting @@ -7241,7 +7276,7 @@ 3: [ OK ] ReplaceAllTest.HandlesWordBoundaries (0 ms) 3: [ RUN ] ReplaceAllTest.HandlesPossibleRecursiveMatches 3: [ OK ] ReplaceAllTest.HandlesPossibleRecursiveMatches (0 ms) -3: [----------] 6 tests from ReplaceAllTest (1 ms total) +3: [----------] 6 tests from ReplaceAllTest (0 ms total) 3: 3: [----------] 10 tests from TextLineWrapperTest 3: [ RUN ] TextLineWrapperTest.HandlesEmptyStrings @@ -7272,14 +7307,14 @@ 3: [ RUN ] TextWriterTest.WritesLinesInParts 3: [ OK ] TextWriterTest.WritesLinesInParts (0 ms) 3: [ RUN ] TextWriterTest.WritesWrappedLines -3: [ OK ] TextWriterTest.WritesWrappedLines (1 ms) +3: [ OK ] TextWriterTest.WritesWrappedLines (0 ms) 3: [ RUN ] TextWriterTest.WritesLinesInPartsWithWrapper 3: [ OK ] TextWriterTest.WritesLinesInPartsWithWrapper (0 ms) 3: [ RUN ] TextWriterTest.TracksNewlines 3: [ OK ] TextWriterTest.TracksNewlines (0 ms) 3: [ RUN ] TextWriterTest.PreservesTrailingWhitespace 3: [ OK ] TextWriterTest.PreservesTrailingWhitespace (0 ms) -3: [----------] 6 tests from TextWriterTest (1 ms total) +3: [----------] 6 tests from TextWriterTest (0 ms total) 3: 3: [----------] 1 test from TypeTraitsTest 3: [ RUN ] TypeTraitsTest.IsIntegralConstant @@ -7357,24 +7392,24 @@ 3: 3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (0 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (15 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (16 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (1 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (16 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (16 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (16 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (16 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) -3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (1 ms total) +3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (95 ms total) 3: 3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 @@ -7388,15 +7423,15 @@ 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 (0 ms) 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 -3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (1 ms) +3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (0 ms) 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (0 ms) -3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) +3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (0 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 347 tests from 56 test cases ran. (12 ms total) +3: [==========] 347 tests from 56 test cases ran. (132 ms total) 3: [ PASSED ] 347 tests. - 3/54 Test #3: UtilityUnitTests .................... Passed 0.04 sec + 3/54 Test #3: UtilityUnitTests .................... Passed 0.17 sec test 4 Start 4: UtilityMpiUnitTests @@ -7406,15 +7441,15 @@ 4: [----------] Global test environment set-up. 4: [----------] 2 tests from PhysicalNodeCommunicatorTest 4: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct -4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (1 ms) +4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (52 ms) 4: [ RUN ] PhysicalNodeCommunicatorTest.CanCallBarrier -4: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (1 ms) -4: [----------] 2 tests from PhysicalNodeCommunicatorTest (2 ms total) +4: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (44 ms) +4: [----------] 2 tests from PhysicalNodeCommunicatorTest (96 ms total) 4: 4: [----------] Global test environment tear-down -4: [==========] 2 tests from 1 test case ran. (2 ms total) +4: [==========] 2 tests from 1 test case ran. (96 ms total) 4: [ PASSED ] 2 tests. - 4/54 Test #4: UtilityMpiUnitTests ................. Passed 0.02 sec + 4/54 Test #4: UtilityMpiUnitTests ................. Passed 0.13 sec test 5 Start 5: MdlibUnitTest @@ -7429,10 +7464,10 @@ 5: 5: [----------] 2 tests from PrEbinTest 5: [ RUN ] PrEbinTest.HandlesAverages -5: [ OK ] PrEbinTest.HandlesAverages (1 ms) +5: [ OK ] PrEbinTest.HandlesAverages (0 ms) 5: [ RUN ] PrEbinTest.HandlesEmptyAverages 5: [ OK ] PrEbinTest.HandlesEmptyAverages (0 ms) -5: [----------] 2 tests from PrEbinTest (1 ms total) +5: [----------] 2 tests from PrEbinTest (0 ms total) 5: 5: [----------] 4 tests from ShakeTest 5: [ RUN ] ShakeTest.ConstrainsOneBond @@ -7469,7 +7504,7 @@ 5: 5: [----------] 9 tests from UpdateGroups 5: [ RUN ] UpdateGroups.ethaneUA -5: [ OK ] UpdateGroups.ethaneUA (1 ms) +5: [ OK ] UpdateGroups.ethaneUA (0 ms) 5: [ RUN ] UpdateGroups.methane 5: [ OK ] UpdateGroups.methane (0 ms) 5: [ RUN ] UpdateGroups.ethane @@ -7486,7 +7521,7 @@ 5: [ OK ] UpdateGroups.waterFlexAngle (0 ms) 5: [ RUN ] UpdateGroups.twoMoltypes 5: [ OK ] UpdateGroups.twoMoltypes (0 ms) -5: [----------] 9 tests from UpdateGroups (1 ms total) +5: [----------] 9 tests from UpdateGroups (0 ms total) 5: 5: [----------] 1 test from UpdateGroupsCog 5: [ RUN ] UpdateGroupsCog.ComputesCogs @@ -7497,7 +7532,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/0 5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/0 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/1 -5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/1 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/1 (8 ms) 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/2 5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/2 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/3 @@ -7545,7 +7580,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/0 5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/0 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/1 -5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/1 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/1 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/2 5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/2 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/3 @@ -7577,7 +7612,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/0 5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/0 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/1 -5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/1 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/1 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/2 5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/2 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/3 @@ -7613,7 +7648,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/18 5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/18 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/19 -5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/19 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/19 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/0 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/0 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/1 @@ -7653,7 +7688,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/18 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/18 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/19 -5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/19 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/19 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/20 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/20 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/21 @@ -7662,48 +7697,48 @@ 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/22 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 (0 ms) -5: [----------] 84 tests from WithParameters/ConstraintsTest (5 ms total) +5: [----------] 84 tests from WithParameters/ConstraintsTest (9 ms total) 5: 5: [----------] 11 tests from WithParameters/EnergyOutputTest 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/0 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_0.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/0 (3 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/0 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/1 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_1.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/1 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/1 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/2 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_2.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (3 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/3 5: [ OK ] WithParameters/EnergyOutputTest.CheckOutput/3 (0 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/4 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_4.edr as single precision energy file -5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (11 ms) +5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (12 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/5 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_5.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (3 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/6 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_6.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/6 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/6 (5 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/7 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_7.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (3 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/8 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_8.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/8 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/8 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/9 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_9.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/9 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/9 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/10 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_10.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/10 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/10 (9 ms) 5: [----------] 11 tests from WithParameters/EnergyOutputTest (36 ms total) 5: 5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/0 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/0 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/1 -5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/1 (0 ms) +5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/1 (1 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/2 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/2 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/3 @@ -7713,7 +7748,7 @@ 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/5 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/5 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/6 -5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/6 (1 ms) +5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/6 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/7 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/7 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.KnownCalculationModeDoesNotThrow/0 @@ -7791,36 +7826,36 @@ 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/3 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/3 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/4 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/4 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/4 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/5 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/5 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/6 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (5 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (3 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/7 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/7 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/8 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/8 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/9 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/9 (0 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/9 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/10 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/10 (2 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/10 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/11 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/11 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/11 (9 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/12 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/12 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/13 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/13 (2 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/13 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/14 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/14 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/14 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/15 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/15 (1 ms) -5: [----------] 16 tests from WithParameters/LeapFrogTest (18 ms total) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/15 (5 ms) +5: [----------] 16 tests from WithParameters/LeapFrogTest (23 ms total) 5: 5: [----------] 13 tests from WithParameters/SettleTest 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/3 @@ -7836,19 +7871,19 @@ 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (0 ms) -5: [----------] 13 tests from WithParameters/SettleTest (6 ms total) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (8 ms) +5: [----------] 13 tests from WithParameters/SettleTest (12 ms total) 5: 5: [----------] Global test environment tear-down -5: [==========] 187 tests from 13 test cases ran. (69 ms total) +5: [==========] 187 tests from 13 test cases ran. (83 ms total) 5: [ PASSED ] 187 tests. - 5/54 Test #5: MdlibUnitTest ....................... Passed 0.09 sec + 5/54 Test #5: MdlibUnitTest ....................... Passed 0.12 sec test 6 Start 6: AppliedForcesUnitTest @@ -7860,20 +7895,20 @@ 6: [ RUN ] DensityFittingTest.ForceProviderLackingInputThrows 6: [ OK ] DensityFittingTest.ForceProviderLackingInputThrows (1 ms) 6: [ RUN ] DensityFittingTest.SingleAtom -6: [ OK ] DensityFittingTest.SingleAtom (1 ms) -6: [----------] 2 tests from DensityFittingTest (2 ms total) +6: [ OK ] DensityFittingTest.SingleAtom (0 ms) +6: [----------] 2 tests from DensityFittingTest (1 ms total) 6: 6: [----------] 8 tests from DensityFittingOptionsTest 6: [ RUN ] DensityFittingOptionsTest.DefaultParameters 6: [ OK ] DensityFittingOptionsTest.DefaultParameters (0 ms) 6: [ RUN ] DensityFittingOptionsTest.OptionSetsActive -6: [ OK ] DensityFittingOptionsTest.OptionSetsActive (0 ms) +6: [ OK ] DensityFittingOptionsTest.OptionSetsActive (1 ms) 6: [ RUN ] DensityFittingOptionsTest.OutputNoDefaultValuesWhenInactive 6: [ OK ] DensityFittingOptionsTest.OutputNoDefaultValuesWhenInactive (0 ms) 6: [ RUN ] DensityFittingOptionsTest.OutputDefaultValuesWhenActive 6: [ OK ] DensityFittingOptionsTest.OutputDefaultValuesWhenActive (0 ms) 6: [ RUN ] DensityFittingOptionsTest.CanConvertGroupStringToIndexGroup -6: [ OK ] DensityFittingOptionsTest.CanConvertGroupStringToIndexGroup (1 ms) +6: [ OK ] DensityFittingOptionsTest.CanConvertGroupStringToIndexGroup (0 ms) 6: [ RUN ] DensityFittingOptionsTest.InternalsToKvt 6: [ OK ] DensityFittingOptionsTest.InternalsToKvt (0 ms) 6: [ RUN ] DensityFittingOptionsTest.KvtToInternal @@ -7901,17 +7936,17 @@ 6: 6: [----------] 3 tests from ElectricFieldTest 6: [ RUN ] ElectricFieldTest.Static -6: [ OK ] ElectricFieldTest.Static (1 ms) +6: [ OK ] ElectricFieldTest.Static (0 ms) 6: [ RUN ] ElectricFieldTest.Oscillating 6: [ OK ] ElectricFieldTest.Oscillating (0 ms) 6: [ RUN ] ElectricFieldTest.Pulsed 6: [ OK ] ElectricFieldTest.Pulsed (0 ms) -6: [----------] 3 tests from ElectricFieldTest (1 ms total) +6: [----------] 3 tests from ElectricFieldTest (0 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 20 tests from 4 test cases ran. (4 ms total) +6: [==========] 20 tests from 4 test cases ran. (2 ms total) 6: [ PASSED ] 20 tests. - 6/54 Test #6: AppliedForcesUnitTest ............... Passed 0.02 sec + 6/54 Test #6: AppliedForcesUnitTest ............... Passed 0.04 sec test 7 Start 7: CommandLineUnitTests @@ -7925,8 +7960,8 @@ 7: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic 7: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 7: [ RUN ] CommandLineHelpModuleTest.ExportsHelp -7: [ OK ] CommandLineHelpModuleTest.ExportsHelp (1 ms) -7: [----------] 3 tests from CommandLineHelpModuleTest (2 ms total) +7: [ OK ] CommandLineHelpModuleTest.ExportsHelp (0 ms) +7: [----------] 3 tests from CommandLineHelpModuleTest (1 ms total) 7: 7: [----------] 7 tests from CommandLineHelpWriterTest 7: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes @@ -7936,14 +7971,14 @@ 7: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions 7: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions -7: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (1 ms) +7: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups 7: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText 7: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesKnownIssues 7: [ OK ] CommandLineHelpWriterTest.HandlesKnownIssues (0 ms) -7: [----------] 7 tests from CommandLineHelpWriterTest (2 ms total) +7: [----------] 7 tests from CommandLineHelpWriterTest (1 ms total) 7: 7: [----------] 6 tests from CommandLineModuleManagerTest 7: [ RUN ] CommandLineModuleManagerTest.RunsModule @@ -7951,14 +7986,14 @@ 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet -7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (1 ms) +7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 7: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) -7: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) +7: [----------] 6 tests from CommandLineModuleManagerTest (0 ms total) 7: 7: [----------] 13 tests from CommandLineParserTest 7: [ RUN ] CommandLineParserTest.HandlesSingleValues @@ -8015,9 +8050,9 @@ 7: 7: [----------] 21 tests from ParseCommonArgsTest 7: [ RUN ] ParseCommonArgsTest.ParsesIntegerArgs -7: [ OK ] ParseCommonArgsTest.ParsesIntegerArgs (0 ms) +7: [ OK ] ParseCommonArgsTest.ParsesIntegerArgs (4 ms) 7: [ RUN ] ParseCommonArgsTest.ParsesInt64Args -7: [ OK ] ParseCommonArgsTest.ParsesInt64Args (1 ms) +7: [ OK ] ParseCommonArgsTest.ParsesInt64Args (0 ms) 7: [ RUN ] ParseCommonArgsTest.ParsesRealArgs 7: [ OK ] ParseCommonArgsTest.ParsesRealArgs (0 ms) 7: [ RUN ] ParseCommonArgsTest.ParsesStringArgs @@ -8043,25 +8078,25 @@ 7: [ RUN ] ParseCommonArgsTest.HandlesNonExistentInputFiles 7: [ OK ] ParseCommonArgsTest.HandlesNonExistentInputFiles (0 ms) 7: [ RUN ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles -7: [ OK ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles (0 ms) +7: [ OK ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles (1 ms) 7: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified 7: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms) 7: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles -7: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (1 ms) +7: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (0 ms) 7: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension 7: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile 7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (0 ms) 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName -7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) +7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (0 ms) 7: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 7: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) -7: [----------] 21 tests from ParseCommonArgsTest (3 ms total) +7: [----------] 21 tests from ParseCommonArgsTest (5 ms total) 7: 7: [----------] Global test environment tear-down -7: [==========] 59 tests from 7 test cases ran. (9 ms total) +7: [==========] 59 tests from 7 test cases ran. (8 ms total) 7: [ PASSED ] 59 tests. - 7/54 Test #7: CommandLineUnitTests ................ Passed 0.03 sec + 7/54 Test #7: CommandLineUnitTests ................ Passed 0.04 sec test 8 Start 8: DomDecTests @@ -8084,7 +8119,7 @@ 8: [ OK ] HashedMap.LinkedEntries (0 ms) 8: [ RUN ] HashedMap.ResizesTable 8: [ OK ] HashedMap.ResizesTable (0 ms) -8: [----------] 7 tests from HashedMap (0 ms total) +8: [----------] 7 tests from HashedMap (4 ms total) 8: 8: [----------] 2 tests from LocalAtomSetManager 8: [ RUN ] LocalAtomSetManager.CanAddEmptyLocalAtomSet @@ -8094,9 +8129,9 @@ 8: [----------] 2 tests from LocalAtomSetManager (0 ms total) 8: 8: [----------] Global test environment tear-down -8: [==========] 9 tests from 2 test cases ran. (1 ms total) +8: [==========] 9 tests from 2 test cases ran. (4 ms total) 8: [ PASSED ] 9 tests. - 8/54 Test #8: DomDecTests ......................... Passed 0.02 sec + 8/54 Test #8: DomDecTests ......................... Passed 0.03 sec test 9 Start 9: EwaldUnitTests @@ -8106,67 +8141,67 @@ 9: [----------] Global test environment set-up. 9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (1 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (4 ms) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (10 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (1 ms) -9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (5 ms total) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) +9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (11 ms total) 9: 9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (5 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (8 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (4 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (9 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (0 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (0 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (0 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (9 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (2 ms) -9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (36 ms total) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (0 ms) +9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (50 ms total) 9: 9: [----------] 144 tests from SaneInput/PmeGatherTest 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 @@ -8188,7 +8223,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 @@ -8196,9 +8231,9 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 @@ -8208,19 +8243,19 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 @@ -8230,7 +8265,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 @@ -8240,9 +8275,9 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (8 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 @@ -8252,19 +8287,19 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 @@ -8288,13 +8323,13 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 @@ -8302,17 +8337,17 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (4 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 @@ -8340,7 +8375,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 @@ -8348,7 +8383,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 @@ -8360,9 +8395,9 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 @@ -8370,11 +8405,11 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (8 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 @@ -8388,9 +8423,9 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 @@ -8398,7 +8433,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 @@ -8408,11 +8443,11 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 @@ -8424,9 +8459,9 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 @@ -8434,7 +8469,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (4 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 @@ -8450,53 +8485,53 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (0 ms) -9: [----------] 144 tests from SaneInput/PmeGatherTest (24 ms total) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (1 ms) +9: [----------] 144 tests from SaneInput/PmeGatherTest (42 ms total) 9: 9: [----------] 16 tests from SaneInput/PmeSolveTest 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (0 ms) -9: [----------] 16 tests from SaneInput/PmeSolveTest (8 ms total) +9: [----------] 16 tests from SaneInput/PmeSolveTest (10 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (8 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 @@ -8504,37 +8539,37 @@ 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (0 ms) -9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (2 ms total) +9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (10 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (0 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (0 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (0 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (0 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (0 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (0 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) 9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (4 ms total) 9: 9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 @@ -8548,15 +8583,15 @@ 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (8 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 @@ -8565,34 +8600,34 @@ 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (0 ms) -9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (6 ms total) +9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (13 ms total) 9: 9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (5 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (0 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (0 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (0 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (0 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (8 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (0 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (0 ms) -9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (7 ms total) +9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (19 ms total) 9: 9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 @@ -8602,7 +8637,7 @@ 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (5 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (0 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 @@ -8614,44 +8649,44 @@ 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (5 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (1 ms) -9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (9 ms total) +9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (17 ms total) 9: 9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (10 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (3 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (7 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (10 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) -9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (24 ms total) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (11 ms) +9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (62 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 257 tests from 10 test cases ran. (141 ms total) +9: [==========] 257 tests from 10 test cases ran. (266 ms total) 9: [ PASSED ] 257 tests. - 9/54 Test #9: EwaldUnitTests ...................... Passed 0.18 sec + 9/54 Test #9: EwaldUnitTests ...................... Passed 0.32 sec test 10 Start 10: FFTUnitTests @@ -8661,46 +8696,46 @@ 10: [----------] Global test environment set-up. 10: [----------] 2 tests from ManyFFTTest 10: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (7 ms) +10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (11 ms) 10: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (10 ms) -10: [----------] 2 tests from ManyFFTTest (18 ms total) +10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (4 ms) +10: [----------] 2 tests from ManyFFTTest (15 ms total) 10: 10: [----------] 1 test from FFTTest 10: [ RUN ] FFTTest.Real2DLength18_15Test -10: [ OK ] FFTTest.Real2DLength18_15Test (3 ms) -10: [----------] 1 test from FFTTest (4 ms total) +10: [ OK ] FFTTest.Real2DLength18_15Test (1 ms) +10: [----------] 1 test from FFTTest (9 ms total) 10: 10: [----------] 1 test from FFFTest3D 10: [ RUN ] FFFTest3D.Real5_6_9 -10: [ OK ] FFFTest3D.Real5_6_9 (2 ms) -10: [----------] 1 test from FFFTest3D (2 ms total) +10: [ OK ] FFFTest3D.Real5_6_9 (1 ms) +10: [----------] 1 test from FFFTest3D (1 ms total) 10: 10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (0 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (2 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (2 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (4 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (6 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (2 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (8 ms) -10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (23 ms total) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (12 ms) +10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (21 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 14 tests from 4 test cases ran. (47 ms total) +10: [==========] 14 tests from 4 test cases ran. (46 ms total) 10: [ PASSED ] 14 tests. 10/54 Test #10: FFTUnitTests ........................ Passed 0.07 sec test 11 @@ -8876,12 +8911,12 @@ 11: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 11: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 11: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment -11: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (1 ms) +11: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 11: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 11: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 11: [ RUN ] AllocatorTest/2.Move 11: [ OK ] AllocatorTest/2.Move (0 ms) -11: [----------] 4 tests from AllocatorTest/2 (1 ms total) +11: [----------] 4 tests from AllocatorTest/2 (0 ms total) 11: 11: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 11: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment @@ -8895,9 +8930,9 @@ 11: [----------] 4 tests from AllocatorTest/3 (0 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 62 tests from 20 test cases ran. (2 ms total) +11: [==========] 62 tests from 20 test cases ran. (0 ms total) 11: [ PASSED ] 62 tests. -11/54 Test #11: GpuUtilsUnitTests ................... Passed 0.02 sec +11/54 Test #11: GpuUtilsUnitTests ................... Passed 0.04 sec test 12 Start 12: HardwareUnitTests @@ -8907,19 +8942,19 @@ 12: [----------] Global test environment set-up. 12: [----------] 4 tests from HardwareTopologyTest 12: [ RUN ] HardwareTopologyTest.Execute -12: [ OK ] HardwareTopologyTest.Execute (14 ms) +12: [ OK ] HardwareTopologyTest.Execute (15 ms) 12: [ RUN ] HardwareTopologyTest.HwlocExecute -12: [ OK ] HardwareTopologyTest.HwlocExecute (14 ms) +12: [ OK ] HardwareTopologyTest.HwlocExecute (7 ms) 12: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency -12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (12 ms) +12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (7 ms) 12: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (10 ms) -12: [----------] 4 tests from HardwareTopologyTest (50 ms total) +12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (7 ms) +12: [----------] 4 tests from HardwareTopologyTest (36 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 4 tests from 1 test case ran. (50 ms total) +12: [==========] 4 tests from 1 test case ran. (36 ms total) 12: [ PASSED ] 4 tests. -12/54 Test #12: HardwareUnitTests ................... Passed 0.07 sec +12/54 Test #12: HardwareUnitTests ................... Passed 0.06 sec test 13 Start 13: MathUnitTests @@ -8960,9 +8995,9 @@ 13: 13: [----------] 8 tests from TranslateAndScaleTest 13: [ RUN ] TranslateAndScaleTest.identityTransformation -13: [ OK ] TranslateAndScaleTest.identityTransformation (0 ms) +13: [ OK ] TranslateAndScaleTest.identityTransformation (1 ms) 13: [ RUN ] TranslateAndScaleTest.translationWithIdentityScaling -13: [ OK ] TranslateAndScaleTest.translationWithIdentityScaling (1 ms) +13: [ OK ] TranslateAndScaleTest.translationWithIdentityScaling (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingWithZeroTranslation 13: [ OK ] TranslateAndScaleTest.scalingWithZeroTranslation (0 ms) 13: [ RUN ] TranslateAndScaleTest.translationAndScalingNonTrivial @@ -8989,20 +9024,20 @@ 13: [ RUN ] DensitySimilarityTest.CopiedMeasureInnerProductIsCorrect 13: [ OK ] DensitySimilarityTest.CopiedMeasureInnerProductIsCorrect (0 ms) 13: [ RUN ] DensitySimilarityTest.RelativeEntropyOfSameDensityIsZero -13: [ OK ] DensitySimilarityTest.RelativeEntropyOfSameDensityIsZero (1 ms) +13: [ OK ] DensitySimilarityTest.RelativeEntropyOfSameDensityIsZero (0 ms) 13: [ RUN ] DensitySimilarityTest.RelativeEntropyIsCorrect 13: [ OK ] DensitySimilarityTest.RelativeEntropyIsCorrect (0 ms) 13: [ RUN ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect 13: [ OK ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect (0 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsOne -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (21 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (11 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (19 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (9 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (21 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (12 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect 13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect (0 ms) -13: [----------] 12 tests from DensitySimilarityTest (62 ms total) +13: [----------] 12 tests from DensitySimilarityTest (32 ms total) 13: 13: [----------] 6 tests from StructureSimilarityTest 13: [ RUN ] StructureSimilarityTest.StructureComparedToSelfHasZeroRMSD @@ -9044,7 +9079,7 @@ 13: [ RUN ] FunctionTest.Log2I32Bit 13: [ OK ] FunctionTest.Log2I32Bit (0 ms) 13: [ RUN ] FunctionTest.Log2I64Bit -13: [ OK ] FunctionTest.Log2I64Bit (1 ms) +13: [ OK ] FunctionTest.Log2I64Bit (0 ms) 13: [ RUN ] FunctionTest.GreatestCommonDivisor 13: [ OK ] FunctionTest.GreatestCommonDivisor (0 ms) 13: [ RUN ] FunctionTest.InvsqrtFloat @@ -9081,7 +9116,7 @@ 13: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 13: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble 13: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (1 ms) -13: [----------] 21 tests from FunctionTest (2 ms total) +13: [----------] 21 tests from FunctionTest (1 ms total) 13: 13: [----------] 4 tests from GaussianOn1DLattice 13: [ RUN ] GaussianOn1DLattice.sumsCloseToOne @@ -9177,7 +9212,7 @@ 13: [ RUN ] MultiDimArrayTest.canConstructAndFillDynamic 13: [ OK ] MultiDimArrayTest.canConstructAndFillDynamic (0 ms) 13: [ RUN ] MultiDimArrayTest.canSetValuesInStatic -13: [ OK ] MultiDimArrayTest.canSetValuesInStatic (1 ms) +13: [ OK ] MultiDimArrayTest.canSetValuesInStatic (0 ms) 13: [ RUN ] MultiDimArrayTest.canSetValuesInDynamic 13: [ OK ] MultiDimArrayTest.canSetValuesInDynamic (0 ms) 13: [ RUN ] MultiDimArrayTest.canMoveConstructStatic @@ -9222,7 +9257,7 @@ 13: [ OK ] MultiDimArrayTest.constViewConstBegin (0 ms) 13: [ RUN ] MultiDimArrayTest.constViewConstEnd 13: [ OK ] MultiDimArrayTest.constViewConstEnd (0 ms) -13: [----------] 25 tests from MultiDimArrayTest (1 ms total) +13: [----------] 25 tests from MultiDimArrayTest (0 ms total) 13: 13: [----------] 4 tests from MultiDimArrayToMdSpanTest 13: [ RUN ] MultiDimArrayToMdSpanTest.convertsToMdSpan @@ -9420,12 +9455,12 @@ 13: [ OK ] RVecTest.MoveConstructorWorks (0 ms) 13: [ RUN ] RVecTest.MoveAssignmentWorks 13: [ OK ] RVecTest.MoveAssignmentWorks (0 ms) -13: [----------] 37 tests from RVecTest (0 ms total) +13: [----------] 37 tests from RVecTest (1 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 204 tests from 29 test cases ran. (66 ms total) +13: [==========] 204 tests from 29 test cases ran. (35 ms total) 13: [ PASSED ] 204 tests. -13/54 Test #13: MathUnitTests ....................... Passed 0.09 sec +13/54 Test #13: MathUnitTests ....................... Passed 0.06 sec test 14 Start 14: MdrunUtilityUnitTests @@ -9453,29 +9488,29 @@ 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 14: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto -14: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (0 ms) +14: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (1 ms) 14: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced -14: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (1 ms) +14: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced 14: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (0 ms) 14: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread 14: NOTE: Affinity setting failed. 14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto -14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (0 ms) +14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (12 ms) 14: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced -14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (0 ms) +14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (1 ms) 14: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads 14: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (1 ms) 14: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 14: NOTE: Affinity setting for 1/2 threads failed. 14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (0 ms) -14: [----------] 17 tests from ThreadAffinityTest (2 ms total) +14: [----------] 17 tests from ThreadAffinityTest (15 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 17 tests from 1 test case ran. (2 ms total) +14: [==========] 17 tests from 1 test case ran. (15 ms total) 14: [ PASSED ] 17 tests. -14/54 Test #14: MdrunUtilityUnitTests ............... Passed 0.01 sec +14/54 Test #14: MdrunUtilityUnitTests ............... Passed 0.03 sec test 15 Start 15: MdrunUtilityMpiUnitTests @@ -9485,40 +9520,40 @@ 15: [----------] Global test environment set-up. 15: [----------] 6 tests from ThreadAffinityMultiRankTest 15: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode -15: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (3 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (188 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride -15: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (2 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (120 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes -15: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (2 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (104 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled -15: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (0 ms) +15: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (92 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto -15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (1 ms) +15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (76 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce -15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (1 ms) -15: [----------] 6 tests from ThreadAffinityMultiRankTest (9 ms total) +15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (160 ms) +15: [----------] 6 tests from ThreadAffinityMultiRankTest (740 ms total) 15: 15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (1 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (84 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (1 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (68 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (2 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (88 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (1 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (88 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (1 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (72 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (1 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (96 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (1 ms) -15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (9 ms total) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (80 ms) +15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (576 ms total) 15: 15: [----------] Global test environment tear-down -15: [==========] 13 tests from 2 test cases ran. (18 ms total) +15: [==========] 13 tests from 2 test cases ran. (1316 ms total) 15: [ PASSED ] 13 tests. -15/54 Test #15: MdrunUtilityMpiUnitTests ............ Passed 0.04 sec +15/54 Test #15: MdrunUtilityMpiUnitTests ............ Passed 1.34 sec test 16 Start 16: MDSpanTests @@ -9608,13 +9643,13 @@ 16: [ RUN ] MdSpanTest/1.Properties 16: [ OK ] MdSpanTest/1.Properties (0 ms) 16: [ RUN ] MdSpanTest/1.Operator -16: [ OK ] MdSpanTest/1.Operator (1 ms) -16: [----------] 6 tests from MdSpanTest/1 (1 ms total) +16: [ OK ] MdSpanTest/1.Operator (0 ms) +16: [----------] 6 tests from MdSpanTest/1 (0 ms total) 16: 16: [----------] Global test environment tear-down -16: [==========] 32 tests from 7 test cases ran. (1 ms total) +16: [==========] 32 tests from 7 test cases ran. (0 ms total) 16: [ PASSED ] 32 tests. -16/54 Test #16: MDSpanTests ......................... Passed 0.02 sec +16/54 Test #16: MDSpanTests ......................... Passed 0.03 sec test 17 Start 17: OnlineHelpUnitTests @@ -9635,7 +9670,7 @@ 17: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 17: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns 17: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) -17: [----------] 6 tests from TextTableFormatterTest (1 ms total) +17: [----------] 6 tests from TextTableFormatterTest (0 ms total) 17: 17: [----------] 3 tests from HelpManagerTest 17: [ RUN ] HelpManagerTest.HandlesRootTopic @@ -9643,15 +9678,15 @@ 17: [ RUN ] HelpManagerTest.HandlesSubTopics 17: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 17: [ RUN ] HelpManagerTest.HandlesInvalidTopics -17: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) -17: [----------] 3 tests from HelpManagerTest (0 ms total) +17: [ OK ] HelpManagerTest.HandlesInvalidTopics (1 ms) +17: [----------] 3 tests from HelpManagerTest (1 ms total) 17: 17: [----------] 2 tests from HelpTopicFormattingTest 17: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic 17: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (0 ms) 17: [ RUN ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics -17: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (1 ms) -17: [----------] 2 tests from HelpTopicFormattingTest (1 ms total) +17: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (0 ms) +17: [----------] 2 tests from HelpTopicFormattingTest (0 ms total) 17: 17: [----------] 11 tests from HelpWriterContextTest 17: [ RUN ] HelpWriterContextTest.FormatsParagraphs @@ -9671,17 +9706,17 @@ 17: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList 17: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsSimpleTable -17: [ OK ] HelpWriterContextTest.FormatsSimpleTable (1 ms) +17: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsGridTable 17: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsTitles 17: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms) -17: [----------] 11 tests from HelpWriterContextTest (1 ms total) +17: [----------] 11 tests from HelpWriterContextTest (0 ms total) 17: 17: [----------] Global test environment tear-down -17: [==========] 22 tests from 4 test cases ran. (3 ms total) +17: [==========] 22 tests from 4 test cases ran. (1 ms total) 17: [ PASSED ] 22 tests. -17/54 Test #17: OnlineHelpUnitTests ................. Passed 0.02 sec +17/54 Test #17: OnlineHelpUnitTests ................. Passed 0.04 sec test 18 Start 18: OptionsUnitTests @@ -9697,10 +9732,10 @@ 18: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition 18: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) 18: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition -18: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (1 ms) +18: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (0 ms) 18: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues 18: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) -18: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) +18: [----------] 5 tests from AbstractOptionStorageTest (0 ms total) 18: 18: [----------] 8 tests from FileNameOptionTest 18: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension @@ -9727,11 +9762,11 @@ 18: [ RUN ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension 18: [ OK ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension (0 ms) 18: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile -18: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (0 ms) +18: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (1 ms) 18: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile 18: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (0 ms) 18: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile -18: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile (1 ms) +18: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile (0 ms) 18: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile 18: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile (0 ms) 18: [ RUN ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified @@ -9795,7 +9830,7 @@ 18: [ RUN ] OptionsAssignerIntegerTest.StoresSingleValue 18: [ OK ] OptionsAssignerIntegerTest.StoresSingleValue (0 ms) 18: [ RUN ] OptionsAssignerIntegerTest.HandlesEmptyValue -18: [ OK ] OptionsAssignerIntegerTest.HandlesEmptyValue (1 ms) +18: [ OK ] OptionsAssignerIntegerTest.HandlesEmptyValue (0 ms) 18: [ RUN ] OptionsAssignerIntegerTest.HandlesInvalidValue 18: [ OK ] OptionsAssignerIntegerTest.HandlesInvalidValue (0 ms) 18: [ RUN ] OptionsAssignerIntegerTest.HandlesOverflow @@ -9818,7 +9853,7 @@ 18: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 18: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment 18: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms) -18: [----------] 13 tests from OptionsAssignerIntegerTest (1 ms total) +18: [----------] 13 tests from OptionsAssignerIntegerTest (0 ms total) 18: 18: [----------] 5 tests from OptionsAssignerDoubleTest 18: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue @@ -9881,11 +9916,11 @@ 18: [ RUN ] RepeatingOptionSectionTest.HandlesTwoInstances 18: [ OK ] RepeatingOptionSectionTest.HandlesTwoInstances (0 ms) 18: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault -18: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault (1 ms) +18: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault (0 ms) 18: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault 18: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (0 ms) 18: [ RUN ] RepeatingOptionSectionTest.HandlesNestedSections -18: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (0 ms) +18: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (1 ms) 18: [----------] 8 tests from RepeatingOptionSectionTest (1 ms total) 18: 18: [----------] 1 test from TimeUnitManagerTest @@ -9942,11 +9977,11 @@ 18: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.OrdersValues 18: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) -18: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total) +18: [----------] 6 tests from TreeValueSupportAdjustTest (0 ms total) 18: 18: [----------] 8 tests from TreeValueSupportTest 18: [ RUN ] TreeValueSupportTest.SupportsBooleanOption -18: [ OK ] TreeValueSupportTest.SupportsBooleanOption (0 ms) +18: [ OK ] TreeValueSupportTest.SupportsBooleanOption (8 ms) 18: [ RUN ] TreeValueSupportTest.SupportsIntegerOption 18: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsInt64Option @@ -9961,12 +9996,12 @@ 18: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsEnumOption 18: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) -18: [----------] 8 tests from TreeValueSupportTest (1 ms total) +18: [----------] 8 tests from TreeValueSupportTest (9 ms total) 18: 18: [----------] Global test environment tear-down -18: [==========] 110 tests from 18 test cases ran. (6 ms total) +18: [==========] 110 tests from 18 test cases ran. (11 ms total) 18: [ PASSED ] 110 tests. -18/54 Test #18: OptionsUnitTests .................... Passed 0.03 sec +18/54 Test #18: OptionsUnitTests .................... Passed 0.05 sec test 19 Start 19: PbcutilUnitTest @@ -9989,7 +10024,7 @@ 19: [----------] Global test environment tear-down 19: [==========] 3 tests from 2 test cases ran. (0 ms total) 19: [ PASSED ] 3 tests. -19/54 Test #19: PbcutilUnitTest ..................... Passed 0.02 sec +19/54 Test #19: PbcutilUnitTest ..................... Passed 0.03 sec test 20 Start 20: RandomUnitTests @@ -10010,14 +10045,14 @@ 20: 20: [----------] 4 tests from GammaDistributionTest 20: [ RUN ] GammaDistributionTest.Output -20: [ OK ] GammaDistributionTest.Output (1 ms) +20: [ OK ] GammaDistributionTest.Output (0 ms) 20: [ RUN ] GammaDistributionTest.Logical 20: [ OK ] GammaDistributionTest.Logical (0 ms) 20: [ RUN ] GammaDistributionTest.Reset 20: [ OK ] GammaDistributionTest.Reset (0 ms) 20: [ RUN ] GammaDistributionTest.AltParam 20: [ OK ] GammaDistributionTest.AltParam (0 ms) -20: [----------] 4 tests from GammaDistributionTest (1 ms total) +20: [----------] 4 tests from GammaDistributionTest (0 ms total) 20: 20: [----------] 4 tests from NormalDistributionTest 20: [ RUN ] NormalDistributionTest.Output @@ -10037,7 +10072,7 @@ 20: 20: [----------] 6 tests from TabulatedNormalDistributionTest 20: [ RUN ] TabulatedNormalDistributionTest.Output14 -20: [ OK ] TabulatedNormalDistributionTest.Output14 (0 ms) +20: [ OK ] TabulatedNormalDistributionTest.Output14 (1 ms) 20: [ RUN ] TabulatedNormalDistributionTest.Output16 20: [ OK ] TabulatedNormalDistributionTest.Output16 (0 ms) 20: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14 @@ -10048,12 +10083,12 @@ 20: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms) 20: [ RUN ] TabulatedNormalDistributionTest.AltParam 20: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms) -20: [----------] 6 tests from TabulatedNormalDistributionTest (0 ms total) +20: [----------] 6 tests from TabulatedNormalDistributionTest (1 ms total) 20: 20: [----------] 1 test from TabulatedNormalDistributionTableTest 20: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties -20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (2 ms) -20: [----------] 1 test from TabulatedNormalDistributionTableTest (2 ms total) +20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (8 ms) +20: [----------] 1 test from TabulatedNormalDistributionTableTest (8 ms total) 20: 20: [----------] 6 tests from ThreeFry2x64Test 20: [ RUN ] ThreeFry2x64Test.Logical @@ -10065,10 +10100,10 @@ 20: [ RUN ] ThreeFry2x64Test.Discard 20: [ OK ] ThreeFry2x64Test.Discard (0 ms) 20: [ RUN ] ThreeFry2x64Test.InvalidCounter -20: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms) +20: [ OK ] ThreeFry2x64Test.InvalidCounter (1 ms) 20: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter 20: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms) -20: [----------] 6 tests from ThreeFry2x64Test (0 ms total) +20: [----------] 6 tests from ThreeFry2x64Test (1 ms total) 20: 20: [----------] 4 tests from UniformIntDistributionTest 20: [ RUN ] UniformIntDistributionTest.Output @@ -10092,7 +10127,7 @@ 20: [ OK ] UniformRealDistributionTest.Reset (0 ms) 20: [ RUN ] UniformRealDistributionTest.AltParam 20: [ OK ] UniformRealDistributionTest.AltParam (0 ms) -20: [----------] 5 tests from UniformRealDistributionTest (1 ms total) +20: [----------] 5 tests from UniformRealDistributionTest (0 ms total) 20: 20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 @@ -10116,9 +10151,9 @@ 20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (0 ms total) 20: 20: [----------] Global test environment tear-down -20: [==========] 44 tests from 10 test cases ran. (4 ms total) +20: [==========] 44 tests from 10 test cases ran. (10 ms total) 20: [ PASSED ] 44 tests. -20/54 Test #20: RandomUnitTests ..................... Passed 0.03 sec +20/54 Test #20: RandomUnitTests ..................... Passed 0.05 sec test 21 Start 21: RestraintTests @@ -10134,7 +10169,7 @@ 21: [----------] Global test environment tear-down 21: [==========] 1 test from 1 test case ran. (0 ms total) 21: [ PASSED ] 1 test. -21/54 Test #21: RestraintTests ...................... Passed 0.02 sec +21/54 Test #21: RestraintTests ...................... Passed 0.03 sec test 22 Start 22: TableUnitTests @@ -10146,7 +10181,7 @@ 22: [ RUN ] SplineTableTest/0.HandlesIncorrectInput 22: [ OK ] SplineTableTest/0.HandlesIncorrectInput (1 ms) 22: [ RUN ] SplineTableTest/0.Sinc -22: [ OK ] SplineTableTest/0.Sinc (1 ms) +22: [ OK ] SplineTableTest/0.Sinc (0 ms) 22: [ RUN ] SplineTableTest/0.LJ12 22: [ OK ] SplineTableTest/0.LJ12 (13 ms) 22: [ RUN ] SplineTableTest/0.PmeCorrection @@ -10154,24 +10189,24 @@ 22: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput 22: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (0 ms) 22: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr -22: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (1 ms) +22: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (0 ms) 22: [ RUN ] SplineTableTest/0.TwoFunctions -22: [ OK ] SplineTableTest/0.TwoFunctions (23 ms) +22: [ OK ] SplineTableTest/0.TwoFunctions (22 ms) 22: [ RUN ] SplineTableTest/0.ThreeFunctions -22: [ OK ] SplineTableTest/0.ThreeFunctions (20 ms) +22: [ OK ] SplineTableTest/0.ThreeFunctions (26 ms) 22: [ RUN ] SplineTableTest/0.Simd -22: [ OK ] SplineTableTest/0.Simd (3 ms) +22: [ OK ] SplineTableTest/0.Simd (2 ms) 22: [ RUN ] SplineTableTest/0.SimdTwoFunctions -22: [ OK ] SplineTableTest/0.SimdTwoFunctions (13 ms) -22: [----------] 10 tests from SplineTableTest/0 (77 ms total) +22: [ OK ] SplineTableTest/0.SimdTwoFunctions (21 ms) +22: [----------] 10 tests from SplineTableTest/0 (86 ms total) 22: 22: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 22: [ RUN ] SplineTableTest/1.HandlesIncorrectInput -22: [ OK ] SplineTableTest/1.HandlesIncorrectInput (1 ms) +22: [ OK ] SplineTableTest/1.HandlesIncorrectInput (0 ms) 22: [ RUN ] SplineTableTest/1.Sinc 22: [ OK ] SplineTableTest/1.Sinc (0 ms) 22: [ RUN ] SplineTableTest/1.LJ12 -22: [ OK ] SplineTableTest/1.LJ12 (1 ms) +22: [ OK ] SplineTableTest/1.LJ12 (5 ms) 22: [ RUN ] SplineTableTest/1.PmeCorrection 22: [ OK ] SplineTableTest/1.PmeCorrection (1 ms) 22: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput @@ -10179,19 +10214,19 @@ 22: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr 22: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (0 ms) 22: [ RUN ] SplineTableTest/1.TwoFunctions -22: [ OK ] SplineTableTest/1.TwoFunctions (2 ms) +22: [ OK ] SplineTableTest/1.TwoFunctions (1 ms) 22: [ RUN ] SplineTableTest/1.ThreeFunctions 22: [ OK ] SplineTableTest/1.ThreeFunctions (2 ms) 22: [ RUN ] SplineTableTest/1.Simd -22: [ OK ] SplineTableTest/1.Simd (1 ms) +22: [ OK ] SplineTableTest/1.Simd (4 ms) 22: [ RUN ] SplineTableTest/1.SimdTwoFunctions 22: [ OK ] SplineTableTest/1.SimdTwoFunctions (1 ms) -22: [----------] 10 tests from SplineTableTest/1 (9 ms total) +22: [----------] 10 tests from SplineTableTest/1 (14 ms total) 22: 22: [----------] Global test environment tear-down -22: [==========] 20 tests from 2 test cases ran. (86 ms total) +22: [==========] 20 tests from 2 test cases ran. (100 ms total) 22: [ PASSED ] 20 tests. -22/54 Test #22: TableUnitTests ...................... Passed 0.10 sec +22/54 Test #22: TableUnitTests ...................... Passed 0.13 sec test 23 Start 23: TaskAssignmentUnitTests @@ -10214,7 +10249,7 @@ 23: [----------] Global test environment tear-down 23: [==========] 3 tests from 2 test cases ran. (1 ms total) 23: [ PASSED ] 3 tests. -23/54 Test #23: TaskAssignmentUnitTests ............. Passed 0.02 sec +23/54 Test #23: TaskAssignmentUnitTests ............. Passed 0.03 sec test 24 Start 24: TopologyTest @@ -10251,12 +10286,12 @@ 24: [ OK ] SymtabTest.AddLargeNumberOfEntries (0 ms) 24: [ RUN ] SymtabTest.NoDuplicatesInLargeTable 24: [ OK ] SymtabTest.NoDuplicatesInLargeTable (0 ms) -24: [----------] 6 tests from SymtabTest (1 ms total) +24: [----------] 6 tests from SymtabTest (0 ms total) 24: 24: [----------] Global test environment tear-down -24: [==========] 11 tests from 3 test cases ran. (1 ms total) +24: [==========] 11 tests from 3 test cases ran. (0 ms total) 24: [ PASSED ] 11 tests. -24/54 Test #24: TopologyTest ........................ Passed 0.02 sec +24/54 Test #24: TopologyTest ........................ Passed 0.03 sec test 25 Start 25: PullTest @@ -10280,7 +10315,7 @@ 25: [----------] Global test environment tear-down 25: [==========] 5 tests from 1 test case ran. (0 ms total) 25: [ PASSED ] 5 tests. -25/54 Test #25: PullTest ............................ Passed 0.02 sec +25/54 Test #25: PullTest ............................ Passed 0.04 sec test 26 Start 26: AwhTest @@ -10295,8 +10330,8 @@ 26: 26: [----------] 1 test from gridTest 26: [ RUN ] gridTest.neighborhood -26: [ OK ] gridTest.neighborhood (3 ms) -26: [----------] 1 test from gridTest (3 ms total) +26: [ OK ] gridTest.neighborhood (1 ms) +26: [----------] 1 test from gridTest (1 ms total) 26: 26: [----------] 8 tests from WithParameters/BiasTest 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 @@ -10306,28 +10341,28 @@ 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (1 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (1 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (1 ms) -26: [----------] 8 tests from WithParameters/BiasTest (4 ms total) +26: [----------] 8 tests from WithParameters/BiasTest (2 ms total) 26: 26: [----------] 2 tests from WithParameters/BiasStateTest 26: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (0 ms) 26: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1 -26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (1 ms) -26: [----------] 2 tests from WithParameters/BiasStateTest (1 ms total) +26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (0 ms) +26: [----------] 2 tests from WithParameters/BiasStateTest (0 ms total) 26: 26: [----------] Global test environment tear-down -26: [==========] 12 tests from 4 test cases ran. (8 ms total) +26: [==========] 12 tests from 4 test cases ran. (3 ms total) 26: [ PASSED ] 12 tests. -26/54 Test #26: AwhTest ............................. Passed 0.03 sec +26/54 Test #26: AwhTest ............................. Passed 0.04 sec test 27 Start 27: SimdUnitTests @@ -10446,7 +10481,7 @@ 27: [ OK ] SimdFloatingpointTest.cvtFloat2Double (0 ms) 27: [ RUN ] SimdFloatingpointTest.cvtDouble2Float 27: [ OK ] SimdFloatingpointTest.cvtDouble2Float (0 ms) -27: [----------] 42 tests from SimdFloatingpointTest (1 ms total) +27: [----------] 42 tests from SimdFloatingpointTest (0 ms total) 27: 27: [----------] 16 tests from SimdFloatingpointUtilTest 27: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose4 @@ -10494,7 +10529,7 @@ 27: 27: [----------] 56 tests from SimdMathTest 27: [ RUN ] SimdMathTest.generateTestPointsFloat -27: [ OK ] SimdMathTest.generateTestPointsFloat (0 ms) +27: [ OK ] SimdMathTest.generateTestPointsFloat (1 ms) 27: [ RUN ] SimdMathTest.copysign 27: [ OK ] SimdMathTest.copysign (0 ms) 27: [ RUN ] SimdMathTest.invsqrt @@ -10502,99 +10537,99 @@ 27: [ RUN ] SimdMathTest.maskzInvsqrt 27: [ OK ] SimdMathTest.maskzInvsqrt (0 ms) 27: [ RUN ] SimdMathTest.invsqrtPair -27: [ OK ] SimdMathTest.invsqrtPair (1 ms) +27: [ OK ] SimdMathTest.invsqrtPair (0 ms) 27: [ RUN ] SimdMathTest.sqrt 27: [ OK ] SimdMathTest.sqrt (1 ms) 27: [ RUN ] SimdMathTest.sqrtUnsafe -27: [ OK ] SimdMathTest.sqrtUnsafe (1 ms) +27: [ OK ] SimdMathTest.sqrtUnsafe (0 ms) 27: [ RUN ] SimdMathTest.inv -27: [ OK ] SimdMathTest.inv (1 ms) +27: [ OK ] SimdMathTest.inv (4 ms) 27: [ RUN ] SimdMathTest.maskzInv 27: [ OK ] SimdMathTest.maskzInv (0 ms) 27: [ RUN ] SimdMathTest.cbrt 27: [ OK ] SimdMathTest.cbrt (1 ms) 27: [ RUN ] SimdMathTest.invcbrt -27: [ OK ] SimdMathTest.invcbrt (2 ms) +27: [ OK ] SimdMathTest.invcbrt (1 ms) 27: [ RUN ] SimdMathTest.log2 -27: [ OK ] SimdMathTest.log2 (1 ms) +27: [ OK ] SimdMathTest.log2 (0 ms) 27: [ RUN ] SimdMathTest.log 27: [ OK ] SimdMathTest.log (0 ms) 27: [ RUN ] SimdMathTest.exp2 -27: [ OK ] SimdMathTest.exp2 (2 ms) +27: [ OK ] SimdMathTest.exp2 (1 ms) 27: [ RUN ] SimdMathTest.exp2Unsafe -27: [ OK ] SimdMathTest.exp2Unsafe (1 ms) +27: [ OK ] SimdMathTest.exp2Unsafe (0 ms) 27: [ RUN ] SimdMathTest.exp -27: [ OK ] SimdMathTest.exp (1 ms) +27: [ OK ] SimdMathTest.exp (0 ms) 27: [ RUN ] SimdMathTest.expUnsafe -27: [ OK ] SimdMathTest.expUnsafe (0 ms) +27: [ OK ] SimdMathTest.expUnsafe (1 ms) 27: [ RUN ] SimdMathTest.pow 27: [ OK ] SimdMathTest.pow (0 ms) 27: [ RUN ] SimdMathTest.powUnsafe 27: [ OK ] SimdMathTest.powUnsafe (0 ms) 27: [ RUN ] SimdMathTest.erf -27: [ OK ] SimdMathTest.erf (1 ms) +27: [ OK ] SimdMathTest.erf (0 ms) 27: [ RUN ] SimdMathTest.erfc -27: [ OK ] SimdMathTest.erfc (1 ms) +27: [ OK ] SimdMathTest.erfc (8 ms) 27: [ RUN ] SimdMathTest.sin 27: [ OK ] SimdMathTest.sin (1 ms) 27: [ RUN ] SimdMathTest.cos -27: [ OK ] SimdMathTest.cos (1 ms) +27: [ OK ] SimdMathTest.cos (0 ms) 27: [ RUN ] SimdMathTest.tan -27: [ OK ] SimdMathTest.tan (2 ms) +27: [ OK ] SimdMathTest.tan (1 ms) 27: [ RUN ] SimdMathTest.asin 27: [ OK ] SimdMathTest.asin (0 ms) 27: [ RUN ] SimdMathTest.acos -27: [ OK ] SimdMathTest.acos (1 ms) +27: [ OK ] SimdMathTest.acos (0 ms) 27: [ RUN ] SimdMathTest.atan -27: [ OK ] SimdMathTest.atan (1 ms) +27: [ OK ] SimdMathTest.atan (0 ms) 27: [ RUN ] SimdMathTest.atan2 27: [ OK ] SimdMathTest.atan2 (0 ms) 27: [ RUN ] SimdMathTest.pmeForceCorrection 27: [ OK ] SimdMathTest.pmeForceCorrection (1 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrection -27: [ OK ] SimdMathTest.pmePotentialCorrection (1 ms) +27: [ OK ] SimdMathTest.pmePotentialCorrection (0 ms) 27: [ RUN ] SimdMathTest.invsqrtSingleAccuracy -27: [ OK ] SimdMathTest.invsqrtSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.invsqrtSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy 27: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracy 27: [ OK ] SimdMathTest.sqrtSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe -27: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (1 ms) +27: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.invSingleAccuracy -27: [ OK ] SimdMathTest.invSingleAccuracy (2 ms) +27: [ OK ] SimdMathTest.invSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.cbrtSingleAccuracy 27: [ OK ] SimdMathTest.cbrtSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.invcbrtSingleAccuracy 27: [ OK ] SimdMathTest.invcbrtSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.log2SingleAccuracy -27: [ OK ] SimdMathTest.log2SingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.log2SingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.logSingleAccuracy -27: [ OK ] SimdMathTest.logSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.logSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracy 27: [ OK ] SimdMathTest.exp2SingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe -27: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) +27: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracy 27: [ OK ] SimdMathTest.expSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe -27: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) +27: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.powSingleAccuracy 27: [ OK ] SimdMathTest.powSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.powSingleAccuracyUnsafe 27: [ OK ] SimdMathTest.powSingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.erfSingleAccuracy -27: [ OK ] SimdMathTest.erfSingleAccuracy (0 ms) +27: [ OK ] SimdMathTest.erfSingleAccuracy (8 ms) 27: [ RUN ] SimdMathTest.erfcSingleAccuracy 27: [ OK ] SimdMathTest.erfcSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.sinSingleAccuracy -27: [ OK ] SimdMathTest.sinSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.sinSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.cosSingleAccuracy -27: [ OK ] SimdMathTest.cosSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.cosSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.tanSingleAccuracy 27: [ OK ] SimdMathTest.tanSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.asinSingleAccuracy -27: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.asinSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.acosSingleAccuracy 27: [ OK ] SimdMathTest.acosSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.atanSingleAccuracy @@ -10602,10 +10637,10 @@ 27: [ RUN ] SimdMathTest.atan2SingleAccuracy 27: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy -27: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy -27: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (1 ms) -27: [----------] 56 tests from SimdMathTest (46 ms total) +27: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) +27: [----------] 56 tests from SimdMathTest (37 ms total) 27: 27: [----------] 1 test from EmptyArrayRefTest 27: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -10637,7 +10672,7 @@ 27: [ OK ] ArrayRefTest/2.ConstructFromArrayRefWorks (0 ms) 27: [ RUN ] ArrayRefTest/2.ConstructFromArrayWorks 27: [ OK ] ArrayRefTest/2.ConstructFromArrayWorks (0 ms) -27: [----------] 3 tests from ArrayRefTest/2 (0 ms total) +27: [----------] 3 tests from ArrayRefTest/2 (1 ms total) 27: 27: [----------] 3 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef 27: [ RUN ] ArrayRefTest/3.ConstructFromPointersWorks @@ -10879,7 +10914,7 @@ 27: [ OK ] SimdScalarTest.cvtIB2B (0 ms) 27: [ RUN ] SimdScalarTest.expandScalarsToTriplets 27: [ OK ] SimdScalarTest.expandScalarsToTriplets (0 ms) -27: [----------] 41 tests from SimdScalarTest (0 ms total) +27: [----------] 41 tests from SimdScalarTest (4 ms total) 27: 27: [----------] 8 tests from SimdScalarUtilTest 27: [ RUN ] SimdScalarUtilTest.gatherLoadTranspose @@ -10895,10 +10930,10 @@ 27: [ RUN ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose 27: [ OK ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose (0 ms) 27: [ RUN ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose -27: [ OK ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose (1 ms) +27: [ OK ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose (0 ms) 27: [ RUN ] SimdScalarUtilTest.reduceIncr4ReturnSum 27: [ OK ] SimdScalarUtilTest.reduceIncr4ReturnSum (0 ms) -27: [----------] 8 tests from SimdScalarUtilTest (1 ms total) +27: [----------] 8 tests from SimdScalarUtilTest (0 ms total) 27: 27: [----------] 37 tests from SimdScalarMathTest 27: [ RUN ] SimdScalarMathTest.copysign @@ -10978,9 +11013,9 @@ 27: [----------] 37 tests from SimdScalarMathTest (0 ms total) 27: 27: [----------] Global test environment tear-down -27: [==========] 288 tests from 22 test cases ran. (48 ms total) +27: [==========] 288 tests from 22 test cases ran. (42 ms total) 27: [ PASSED ] 288 tests. -27/54 Test #27: SimdUnitTests ....................... Passed 0.07 sec +27/54 Test #27: SimdUnitTests ....................... Passed 0.08 sec test 28 Start 28: CompatibilityHelpersTests @@ -11070,7 +11105,7 @@ 28: [ RUN ] OptionalTest.CanResetContent 28: [ OK ] OptionalTest.CanResetContent (0 ms) 28: [ RUN ] OptionalTest.ProvidesRelationalOperators -28: [ OK ] OptionalTest.ProvidesRelationalOperators (1 ms) +28: [ OK ] OptionalTest.ProvidesRelationalOperators (0 ms) 28: [ RUN ] OptionalTest.ProvidesMixedTypeRelationalOperators 28: [ OK ] OptionalTest.ProvidesMixedTypeRelationalOperators (0 ms) 28: [ RUN ] OptionalTest.CanProduceHash @@ -11096,7 +11131,7 @@ 28: sizeof( optional ): 32 (16) 28: sizeof( optional ): 2 (1) 28: [ OK ] OptionalTest.ShowSizeDependingOnBaseType (0 ms) -28: [----------] 45 tests from OptionalTest (1 ms total) +28: [----------] 45 tests from OptionalTest (0 ms total) 28: 28: [----------] 7 tests from MakeOptionalTest 28: [ RUN ] MakeOptionalTest.CanMoveAssignBetweenEngagedAndDisengagedOptionals @@ -11366,7 +11401,7 @@ 28: [ OK ] StringViewTest.HashOfU16StringViewIsEqualToHashOfString (0 ms) 28: [ RUN ] StringViewTest.HashOfU32StringViewIsEqualToHashOfString 28: [ OK ] StringViewTest.HashOfU32StringViewIsEqualToHashOfString (0 ms) -28: [----------] 80 tests from StringViewTest (0 ms total) +28: [----------] 80 tests from StringViewTest (1 ms total) 28: 28: [----------] 5 tests from StringViewExtensionTest 28: [ RUN ] StringViewExtensionTest.CanConstructViewFromString @@ -11382,9 +11417,9 @@ 28: [----------] 5 tests from StringViewExtensionTest (0 ms total) 28: 28: [----------] Global test environment tear-down -28: [==========] 170 tests from 12 test cases ran. (1 ms total) +28: [==========] 170 tests from 12 test cases ran. (2 ms total) 28: [ PASSED ] 170 tests. -28/54 Test #28: CompatibilityHelpersTests ........... Passed 0.01 sec +28/54 Test #28: CompatibilityHelpersTests ........... Passed 0.05 sec test 29 Start 29: GmxAnaTest @@ -11394,13 +11429,13 @@ 29: [----------] Global test environment set-up. 29: [----------] 5 tests from Entropy 29: [ RUN ] Entropy.Schlitter_300_NoLinear -29: [ OK ] Entropy.Schlitter_300_NoLinear (1 ms) +29: [ OK ] Entropy.Schlitter_300_NoLinear (0 ms) 29: [ RUN ] Entropy.Schlitter_300_Linear 29: [ OK ] Entropy.Schlitter_300_Linear (0 ms) 29: [ RUN ] Entropy.QuasiHarmonic_300_NoLinear 29: [ OK ] Entropy.QuasiHarmonic_300_NoLinear (0 ms) 29: [ RUN ] Entropy.QuasiHarmonic_200_NoLinear -29: [ OK ] Entropy.QuasiHarmonic_200_NoLinear (0 ms) +29: [ OK ] Entropy.QuasiHarmonic_200_NoLinear (1 ms) 29: [ RUN ] Entropy.QuasiHarmonic_200_Linear 29: [ OK ] Entropy.QuasiHarmonic_200_Linear (0 ms) 29: [----------] 5 tests from Entropy (1 ms total) @@ -11417,7 +11452,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 0: 'atom1' 29: Selected 1: 'atom2' -29: [ OK ] MindistTest.mindistWorksWithSingleAtoms (2 ms) +29: [ OK ] MindistTest.mindistWorksWithSingleAtoms (0 ms) 29: [ RUN ] MindistTest.mindistWorksWithMultipleAtoms 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -11441,7 +11476,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 0: 'atom1' 29: Selected 1: 'atom2' -29: [ OK ] MindistTest.mindistDoesNotPickUpContacts (1 ms) +29: [ OK ] MindistTest.mindistDoesNotPickUpContacts (0 ms) 29: [ RUN ] MindistTest.mindistPicksUpContacts 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -11453,7 +11488,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 0: 'atom1' 29: Selected 1: 'atom2' -29: [ OK ] MindistTest.mindistPicksUpContacts (1 ms) +29: [ OK ] MindistTest.mindistPicksUpContacts (0 ms) 29: [ RUN ] MindistTest.ngWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -11478,7 +11513,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 3: 'atoms12' 29: Selected 2: 'atom3' -29: [ OK ] MindistTest.groupWorks (1 ms) +29: [ OK ] MindistTest.groupWorks (4 ms) 29: [ RUN ] MindistTest.maxDistWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -11502,7 +11537,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 0: 'atom1' 29: Selected 1: 'atom2' -29: [ OK ] MindistTest.noPbcWorks (1 ms) +29: [ OK ] MindistTest.noPbcWorks (0 ms) 29: [ RUN ] MindistTest.resPerTimeWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -11526,8 +11561,8 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 5: 'atoms123' 29: Special case: making distance matrix between all atoms in group atoms123 -29: [ OK ] MindistTest.matrixWorks (1 ms) -29: [----------] 10 tests from MindistTest (10 ms total) +29: [ OK ] MindistTest.matrixWorks (0 ms) +29: [----------] 10 tests from MindistTest (8 ms total) 29: 29: [----------] 3 tests from MsdTest 29: [ RUN ] MsdTest.threeDimensionalDiffusion @@ -11542,7 +11577,7 @@ 29: Fitting from 1 to 8 ps 29: 29: D[ particles] 4.0000 (+/- 0.0000) 1e-5 cm^2/s -29: [ OK ] MsdTest.threeDimensionalDiffusion (1 ms) +29: [ OK ] MsdTest.threeDimensionalDiffusion (0 ms) 29: [ RUN ] MsdTest.twoDimensionalDiffusion 29: 29: Select a group to calculate mean squared displacement for: @@ -11568,8 +11603,8 @@ 29: Fitting from 1 to 8 ps 29: 29: D[ particles] 8.0000 (+/- 0.0000) 1e-5 cm^2/s -29: [ OK ] MsdTest.oneDimensionalDiffusion (1 ms) -29: [----------] 3 tests from MsdTest (3 ms total) +29: [ OK ] MsdTest.oneDimensionalDiffusion (0 ms) +29: [----------] 3 tests from MsdTest (1 ms total) 29: 29: [----------] 3 tests from MsdMolTest 29: [ RUN ] MsdMolTest.diffMolMassWeighted @@ -11578,7 +11613,7 @@ 29: For a correct single-point energy evaluation with nsteps = 0, use 29: continuation = yes to avoid constraining the input coordinates. 29: -29: Setting the LD random seed to -570561061 +29: Setting the LD random seed to -433325249 29: Generated 330891 of the 330891 non-bonded parameter combinations 29: Generating 1-4 interactions: fudge = 0.5 29: Generated 330891 of the 330891 1-4 parameter combinations @@ -11615,14 +11650,14 @@ 29: Fitting from 0.008 to 0.088 ps 29: 29: D[ water] 6.5741 (+/- 0.7753) 1e-5 cm^2/s -29: [ OK ] MsdMolTest.diffMolMassWeighted (232 ms) +29: [ OK ] MsdMolTest.diffMolMassWeighted (469 ms) 29: [ RUN ] MsdMolTest.diffMolNonMassWeighted 29: 29: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary/MsdMolTest_diffMolNonMassWeighted.mdp]: 29: For a correct single-point energy evaluation with nsteps = 0, use 29: continuation = yes to avoid constraining the input coordinates. 29: -29: Setting the LD random seed to 902771438 +29: Setting the LD random seed to -1216610977 29: Generated 330891 of the 330891 non-bonded parameter combinations 29: Generating 1-4 interactions: fudge = 0.5 29: Generated 330891 of the 330891 1-4 parameter combinations @@ -11659,14 +11694,14 @@ 29: Fitting from 0.008 to 0.088 ps 29: 29: D[ water] 6.5741 (+/- 0.7753) 1e-5 cm^2/s -29: [ OK ] MsdMolTest.diffMolNonMassWeighted (190 ms) +29: [ OK ] MsdMolTest.diffMolNonMassWeighted (443 ms) 29: [ RUN ] MsdMolTest.diffMolSelected 29: 29: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary/MsdMolTest_diffMolSelected.mdp]: 29: For a correct single-point energy evaluation with nsteps = 0, use 29: continuation = yes to avoid constraining the input coordinates. 29: -29: Setting the LD random seed to -1813057539 +29: Setting the LD random seed to -556417025 29: Generated 330891 of the 330891 non-bonded parameter combinations 29: Generating 1-4 interactions: fudge = 0.5 29: Generated 330891 of the 330891 1-4 parameter combinations @@ -11703,8 +11738,8 @@ 29: Fitting from 0.008 to 0.088 ps 29: 29: D[ mol] 7.8614 (+/- 1.5618) 1e-5 cm^2/s -29: [ OK ] MsdMolTest.diffMolSelected (184 ms) -29: [----------] 3 tests from MsdMolTest (606 ms total) +29: [ OK ] MsdMolTest.diffMolSelected (428 ms) +29: [----------] 3 tests from MsdMolTest (1340 ms total) 29: 29: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj 29: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 @@ -11721,14 +11756,14 @@ 29: Group 2 ( SOL) has 6 elements 29: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Selected 0: 'System' -29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 (1 ms) +29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 (9 ms) 29: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 29: Group 0 ( System) has 6 elements 29: Group 1 ( Water) has 6 elements 29: Group 2 ( SOL) has 6 elements 29: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Selected 0: 'System' -29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 (0 ms) +29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 (1 ms) 29: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 29: Group 0 ( System) has 6 elements 29: Group 1 ( Water) has 6 elements @@ -11736,7 +11771,7 @@ 29: Select a group: Reading frames from gro file '', 6 atoms. 29: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Selected 0: 'System' -29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 (1 ms) +29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 (0 ms) 29: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 29: Group 0 ( System) has 6 elements 29: Group 1 ( Water) has 6 elements @@ -11744,20 +11779,20 @@ 29: Select a group: Reading frames from pdb file Reading frame 0 time 0.000 't= 0.00000', 6 atoms 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Selected 0: 'System' -29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 (1 ms) +29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 (0 ms) 29: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 29: Group 0 ( System) has 6 elements 29: Group 1 ( Water) has 6 elements 29: Group 2 ( SOL) has 6 elements 29: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Selected 0: 'System' -29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 (0 ms) -29: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (4 ms total) +29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 (1 ms) +29: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (13 ms total) 29: 29: [----------] Global test environment tear-down -29: [==========] 27 tests from 5 test cases ran. (624 ms total) +29: [==========] 27 tests from 5 test cases ran. (1363 ms total) 29: [ PASSED ] 27 tests. -29/54 Test #29: GmxAnaTest .......................... Passed 0.64 sec +29/54 Test #29: GmxAnaTest .......................... Passed 1.40 sec test 30 Start 30: GmxPreprocessTests @@ -11767,11 +11802,11 @@ 30: [----------] Global test environment set-up. 30: [----------] 4 tests from GenconfTest 30: [ RUN ] GenconfTest.nbox_Works -30: [ OK ] GenconfTest.nbox_Works (1 ms) +30: [ OK ] GenconfTest.nbox_Works (0 ms) 30: [ RUN ] GenconfTest.nbox_norenumber_Works 30: [ OK ] GenconfTest.nbox_norenumber_Works (0 ms) 30: [ RUN ] GenconfTest.nbox_dist_Works -30: [ OK ] GenconfTest.nbox_dist_Works (0 ms) +30: [ OK ] GenconfTest.nbox_dist_Works (1 ms) 30: [ RUN ] GenconfTest.nbox_rot_Works 30: center of geometry: 1.733667, 1.477000, 0.905167 30: center of geometry: 1.733667, 1.477000, 0.905167 @@ -11785,8 +11820,8 @@ 30: center of geometry: 1.733667, 1.477000, 0.905167 30: center of geometry: 1.733667, 1.477000, 0.905167 30: center of geometry: 1.733667, 1.477000, 0.905167 -30: [ OK ] GenconfTest.nbox_rot_Works (1 ms) -30: [----------] 4 tests from GenconfTest (2 ms total) +30: [ OK ] GenconfTest.nbox_rot_Works (0 ms) +30: [----------] 4 tests from GenconfTest (1 ms total) 30: 30: [----------] 2 tests from GenionTest 30: [ RUN ] GenionTest.HighConcentrationIonPlacement @@ -11801,7 +11836,7 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: Setting the LD random seed to -134246723 +30: Setting the LD random seed to -160778961 30: Generated 331705 of the 331705 non-bonded parameter combinations 30: Generating 1-4 interactions: fudge = 0.5 30: Generated 331705 of the 331705 1-4 parameter combinations @@ -11843,7 +11878,7 @@ 30: Will try to add 4 NA ions and 4 CL ions. 30: Select a continuous group of solvent molecules 30: Selected 1: 'Water' -30: [ OK ] GenionTest.HighConcentrationIonPlacement (200 ms) +30: [ OK ] GenionTest.HighConcentrationIonPlacement (466 ms) 30: [ RUN ] GenionTest.NoIonPlacement 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GenionTest_NoIonPlacement_input.mdp]: @@ -11856,7 +11891,7 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: Setting the LD random seed to -349180417 +30: Setting the LD random seed to -1811939681 30: Generated 331705 of the 331705 non-bonded parameter combinations 30: Generating 1-4 interactions: fudge = 0.5 30: Generated 331705 of the 331705 1-4 parameter combinations @@ -11879,8 +11914,8 @@ 30: There are: 1 Other residues 30: Analysing residues not classified as Protein/DNA/RNA/Water and splitting into groups... 30: This run will generate roughly 0 Mb of data -30: [ OK ] GenionTest.NoIonPlacement (193 ms) -30: [----------] 2 tests from GenionTest (393 ms total) +30: [ OK ] GenionTest.NoIonPlacement (431 ms) +30: [----------] 2 tests from GenionTest (897 ms total) 30: 30: [----------] 1 test from GenRestrTest 30: [ RUN ] GenRestrTest.SimpleRestraintsGenerated @@ -11898,8 +11933,8 @@ 30: Group 9 ( SideChain-H) has 35 elements 30: Select a group: Select group to position restrain 30: Selected 3: 'C-alpha' -30: [ OK ] GenRestrTest.SimpleRestraintsGenerated (1 ms) -30: [----------] 1 test from GenRestrTest (1 ms total) +30: [ OK ] GenRestrTest.SimpleRestraintsGenerated (9 ms) +30: [----------] 1 test from GenRestrTest (9 ms total) 30: 30: [----------] 9 tests from PreprocessingAtomTypesTest 30: [ RUN ] PreprocessingAtomTypesTest.EmptyOnCreate @@ -11920,7 +11955,7 @@ 30: [ OK ] PreprocessingAtomTypesTest.CorrectNameFromTypeNumber (0 ms) 30: [ RUN ] PreprocessingAtomTypesTest.NoNameFromIncorrectTypeNumber 30: [ OK ] PreprocessingAtomTypesTest.NoNameFromIncorrectTypeNumber (0 ms) -30: [----------] 9 tests from PreprocessingAtomTypesTest (0 ms total) +30: [----------] 9 tests from PreprocessingAtomTypesTest (1 ms total) 30: 30: [----------] 10 tests from PreprocessingBondAtomTypeTest 30: [ RUN ] PreprocessingBondAtomTypeTest.EmptyOnCreate @@ -12036,7 +12071,7 @@ 30: Writing generated configuration to /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEnlargedBox_out.gro 30: 30: Output configuration contains 10 atoms in 4 residues -30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (1 ms) +30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (0 ms) 30: [ RUN ] InsertMoleculesTest.InsertsMoleculesWithReplacement 30: Reading solute configuration 30: Initialising inter-atomic distances... @@ -12069,7 +12104,7 @@ 30: Writing generated configuration to /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesWithReplacement_out.gro 30: 30: Output configuration contains 632 atoms in 212 residues -30: [ OK ] InsertMoleculesTest.InsertsMoleculesWithReplacement (4 ms) +30: [ OK ] InsertMoleculesTest.InsertsMoleculesWithReplacement (12 ms) 30: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions 30: Initialising inter-atomic distances... 30: @@ -12102,8 +12137,8 @@ 30: Writing generated configuration to /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoFixedPositions_out.gro 30: 30: Output configuration contains 6 atoms in 3 residues -30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions (1 ms) -30: [----------] 5 tests from InsertMoleculesTest (8 ms total) +30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions (3 ms) +30: [----------] 5 tests from InsertMoleculesTest (17 ms total) 30: 30: [----------] 14 tests from GetIrTest 30: [ RUN ] GetIrTest.HandlesDifferentKindsOfMdpLines @@ -12114,9 +12149,9 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (1 ms) +30: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (2 ms) 30: [ RUN ] GetIrTest.RejectsNonCommentLineWithNoEquals -30: [ OK ] GetIrTest.RejectsNonCommentLineWithNoEquals (8 ms) +30: [ OK ] GetIrTest.RejectsNonCommentLineWithNoEquals (20 ms) 30: [ RUN ] GetIrTest.AcceptsKeyWithoutValue 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsKeyWithoutValue_input.mdp]: @@ -12125,16 +12160,16 @@ 30: 30: [ OK ] GetIrTest.AcceptsKeyWithoutValue (2 ms) 30: [ RUN ] GetIrTest.RejectsValueWithoutKey -30: [ OK ] GetIrTest.RejectsValueWithoutKey (8 ms) +30: [ OK ] GetIrTest.RejectsValueWithoutKey (14 ms) 30: [ RUN ] GetIrTest.RejectsEmptyKeyAndEmptyValue -30: [ OK ] GetIrTest.RejectsEmptyKeyAndEmptyValue (7 ms) +30: [ OK ] GetIrTest.RejectsEmptyKeyAndEmptyValue (15 ms) 30: [ RUN ] GetIrTest.AcceptsDefineParametersWithValuesIncludingAssignment 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsDefineParametersWithValuesIncludingAssignment_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsDefineParametersWithValuesIncludingAssignment (2 ms) +30: [ OK ] GetIrTest.AcceptsDefineParametersWithValuesIncludingAssignment (1 ms) 30: [ RUN ] GetIrTest.AcceptsEmptyLines 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsEmptyLines_input.mdp]: @@ -12148,23 +12183,23 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsElectricField (1 ms) +30: [ OK ] GetIrTest.AcceptsElectricField (9 ms) 30: [ RUN ] GetIrTest.AcceptsElectricFieldPulsed 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsElectricFieldPulsed_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsElectricFieldPulsed (1 ms) +30: [ OK ] GetIrTest.AcceptsElectricFieldPulsed (2 ms) 30: [ RUN ] GetIrTest.AcceptsElectricFieldOscillating 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsElectricFieldOscillating_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsElectricFieldOscillating (2 ms) +30: [ OK ] GetIrTest.AcceptsElectricFieldOscillating (5 ms) 30: [ RUN ] GetIrTest.RejectsDuplicateOldAndNewKeys -30: [ OK ] GetIrTest.RejectsDuplicateOldAndNewKeys (4 ms) +30: [ OK ] GetIrTest.RejectsDuplicateOldAndNewKeys (12 ms) 30: [ RUN ] GetIrTest.AcceptsImplicitSolventNo 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsImplicitSolventNo_input.mdp]: @@ -12173,7 +12208,7 @@ 30: 30: [ OK ] GetIrTest.AcceptsImplicitSolventNo (2 ms) 30: [ RUN ] GetIrTest.RejectsImplicitSolventYes -30: [ OK ] GetIrTest.RejectsImplicitSolventYes (8 ms) +30: [ OK ] GetIrTest.RejectsImplicitSolventYes (14 ms) 30: [ RUN ] GetIrTest.AcceptsMimic 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsMimic_input.mdp]: @@ -12181,7 +12216,7 @@ 30: continuation = yes to avoid constraining the input coordinates. 30: 30: [ OK ] GetIrTest.AcceptsMimic (2 ms) -30: [----------] 14 tests from GetIrTest (50 ms total) +30: [----------] 14 tests from GetIrTest (104 ms total) 30: 30: [----------] 5 tests from SolvateTest 30: [ RUN ] SolvateTest.cs_box_Works @@ -12221,7 +12256,7 @@ 30: Density : 1056.36 (g/l) 30: Number of solvent molecules: 47 30: -30: [ OK ] SolvateTest.cs_box_Works (5 ms) +30: [ OK ] SolvateTest.cs_box_Works (13 ms) 30: [ RUN ] SolvateTest.cs_cp_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -12261,7 +12296,7 @@ 30: Density : 974.777 (g/l) 30: Number of solvent molecules: 886 30: -30: [ OK ] SolvateTest.cs_cp_Works (27 ms) +30: [ OK ] SolvateTest.cs_cp_Works (58 ms) 30: [ RUN ] SolvateTest.cs_cp_p_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -12303,7 +12338,7 @@ 30: 30: Processing topology 30: Adding line for 886 solvent molecules with resname (SOL) to topology file (/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_p_Works_spc-and-methanol.top) -30: [ OK ] SolvateTest.cs_cp_p_Works (25 ms) +30: [ OK ] SolvateTest.cs_cp_p_Works (62 ms) 30: [ RUN ] SolvateTest.shell_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -12344,7 +12379,7 @@ 30: Density : 279.3 (g/l) 30: Number of solvent molecules: 252 30: -30: [ OK ] SolvateTest.shell_Works (12 ms) +30: [ OK ] SolvateTest.shell_Works (24 ms) 30: [ RUN ] SolvateTest.update_Topology_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -12388,8 +12423,8 @@ 30: Processing topology 30: Adding line for 1876 solvent molecules with resname (HOH) to topology file (/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) 30: Adding line for 2169 solvent molecules with resname (SOL) to topology file (/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) -30: [ OK ] SolvateTest.update_Topology_Works (103 ms) -30: [----------] 5 tests from SolvateTest (172 ms total) +30: [ OK ] SolvateTest.update_Topology_Works (235 ms) +30: [----------] 5 tests from SolvateTest (392 ms total) 30: 30: [----------] 1 test from TopDirTests 30: [ RUN ] TopDirTests.NamesArrayHasCorrectSize @@ -12402,13 +12437,13 @@ 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/0 (4 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/0 (11 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/1 30: Note that major changes are planned in future for editconf, to improve usability and utility. 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/1 (2 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/1 (3 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/2 30: Note that major changes are planned in future for editconf, to improve usability and utility. 30: Read 252 atoms @@ -12420,25 +12455,25 @@ 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/3 (1 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/3 (9 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/4 30: Note that major changes are planned in future for editconf, to improve usability and utility. 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/4 (1 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/4 (2 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/5 30: Note that major changes are planned in future for editconf, to improve usability and utility. 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/5 (2 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/5 (1 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/6 30: Note that major changes are planned in future for editconf, to improve usability and utility. 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/6 (1 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/6 (5 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/7 30: Note that major changes are planned in future for editconf, to improve usability and utility. 30: Read 252 atoms @@ -12460,7 +12495,7 @@ 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/0 (3 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/0 (11 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/1 30: 30: Select a group for output: @@ -12500,7 +12535,7 @@ 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/4 (1 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/4 (9 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/5 30: 30: Select a group for output: @@ -12540,13 +12575,13 @@ 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/8 (1 ms) -30: [----------] 18 tests from SinglePeptideFragments/EditconfTest (30 ms total) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/8 (5 ms) +30: [----------] 18 tests from SinglePeptideFragments/EditconfTest (71 ms total) 30: 30: [----------] Global test environment tear-down -30: [==========] 69 tests from 10 test cases ran. (656 ms total) +30: [==========] 69 tests from 10 test cases ran. (1493 ms total) 30: [ PASSED ] 69 tests. -30/54 Test #30: GmxPreprocessTests .................. Passed 0.67 sec +30/54 Test #30: GmxPreprocessTests .................. Passed 1.53 sec test 31 Start 31: Pdb2gmx1Test @@ -12613,7 +12648,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/0 (78 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/0 (67 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -12673,7 +12708,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 (48 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 (76 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -12731,7 +12766,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 (35 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 (75 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -12789,7 +12824,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 (32 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 (64 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -12851,7 +12886,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 (37 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 (78 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -12914,7 +12949,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 (41 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 (82 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -12975,7 +13010,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 (38 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 (79 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13036,7 +13071,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 (35 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 (67 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13095,7 +13130,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 (34 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 (72 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13155,7 +13190,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 (39 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 (83 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13213,7 +13248,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 (35 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 (64 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13271,7 +13306,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 (32 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 (72 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13333,7 +13368,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 (37 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 (74 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13396,7 +13431,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 (41 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 (78 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13457,7 +13492,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 (38 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 (83 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13518,7 +13553,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 (35 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 (67 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13577,7 +13612,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 (34 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 (75 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13637,7 +13672,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 (39 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 (82 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13695,7 +13730,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 (35 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 (77 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13753,7 +13788,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 (32 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 (64 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13815,7 +13850,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 (37 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 (74 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13878,7 +13913,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 (41 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 (86 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13939,7 +13974,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 (38 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 (60 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -14000,13 +14035,13 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 (35 ms) -31: [----------] 24 tests from ForOplsaa/Pdb2gmxTest (926 ms total) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 (46 ms) +31: [----------] 24 tests from ForOplsaa/Pdb2gmxTest (1751 ms total) 31: 31: [----------] Global test environment tear-down -31: [==========] 24 tests from 1 test case ran. (926 ms total) +31: [==========] 24 tests from 1 test case ran. (1751 ms total) 31: [ PASSED ] 24 tests. -31/54 Test #31: Pdb2gmx1Test ........................ Passed 0.94 sec +31/54 Test #31: Pdb2gmx1Test ........................ Passed 1.78 sec test 32 Start 32: Pdb2gmx2Test @@ -14088,7 +14123,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 (60 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 (54 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14163,7 +14198,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 (40 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 (65 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14236,7 +14271,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 (26 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 (61 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14309,7 +14344,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 (23 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 (50 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14386,7 +14421,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 (23 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 (56 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14464,7 +14499,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 (28 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 (61 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14540,7 +14575,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 (25 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 (61 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14616,7 +14651,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 (22 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 (51 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14690,7 +14725,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 (23 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 (55 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14765,7 +14800,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 (27 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 (64 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14838,7 +14873,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 (24 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 (38 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14911,7 +14946,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 (21 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 (26 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14988,7 +15023,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 (24 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 (28 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -15066,7 +15101,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 (29 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 (33 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -15142,7 +15177,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 (24 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 (28 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -15218,8 +15253,8 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 (23 ms) -32: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest (442 ms total) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 (25 ms) +32: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest (756 ms total) 32: 32: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -15299,7 +15334,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 (25 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 (26 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15378,7 +15413,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 (29 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 (30 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15455,7 +15490,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 (26 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 (27 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15532,7 +15567,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 (23 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 (25 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15613,7 +15648,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 (26 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 (27 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15695,7 +15730,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 (31 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 (32 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15775,7 +15810,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 (26 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 (28 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15933,7 +15968,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 (25 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 (26 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -16012,7 +16047,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 (29 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 (30 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -16089,7 +16124,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 (25 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 (50 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -16166,7 +16201,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 (24 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 (66 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -16247,7 +16282,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 (26 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 (54 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -16329,7 +16364,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 (30 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 (74 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -16409,7 +16444,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 (27 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 (59 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -16489,13 +16524,13 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 (24 ms) -32: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest (422 ms total) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 (57 ms) +32: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest (637 ms total) 32: 32: [----------] Global test environment tear-down -32: [==========] 32 tests from 2 test cases ran. (864 ms total) +32: [==========] 32 tests from 2 test cases ran. (1393 ms total) 32: [ PASSED ] 32 tests. -32/54 Test #32: Pdb2gmx2Test ........................ Passed 0.88 sec +32/54 Test #32: Pdb2gmx2Test ........................ Passed 1.43 sec test 33 Start 33: Pdb2gmx3Test @@ -16571,7 +16606,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/0 (77 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/0 (33 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -16640,7 +16675,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 (47 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 (37 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -16707,7 +16742,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 (36 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 (33 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -16774,7 +16809,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 (31 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 (29 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -16845,7 +16880,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 (37 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 (34 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -16917,7 +16952,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 (42 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 (39 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -16987,7 +17022,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 (38 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 (37 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -17057,8 +17092,8 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 (35 ms) -33: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest (343 ms total) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 (32 ms) +33: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest (275 ms total) 33: 33: [----------] 8 tests from ForCharmm27/Pdb2gmxTest 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -17359,7 +17394,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 (32 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 (31 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17437,7 +17472,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 (36 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 (37 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17516,7 +17551,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 (41 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 (40 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17593,7 +17628,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 (39 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 (38 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17671,7 +17706,7 @@ 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ 33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 (34 ms) -33: [----------] 8 tests from ForCharmm27/Pdb2gmxTest (289 ms total) +33: [----------] 8 tests from ForCharmm27/Pdb2gmxTest (287 ms total) 33: 33: [----------] 8 tests from ChainSep/Pdb2gmxTest 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -17759,7 +17794,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 (35 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 (34 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17894,7 +17929,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 (25 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 (26 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17980,7 +18015,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 (34 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 (35 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -18115,7 +18150,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 (24 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 (25 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -18557,7 +18592,7 @@ 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ 33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 (26 ms) -33: [----------] 8 tests from ChainSep/Pdb2gmxTest (239 ms total) +33: [----------] 8 tests from ChainSep/Pdb2gmxTest (240 ms total) 33: 33: [----------] 4 tests from ChainChanges/Pdb2gmxTest 33: [ RUN ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -18658,7 +18693,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/two-fragments.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/0 (16 ms) +33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/0 (18 ms) 33: [ RUN ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/1 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -18856,7 +18891,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/two-fragments.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/2 (16 ms) +33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/2 (17 ms) 33: [ RUN ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/3 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -18955,13 +18990,13 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/two-fragments.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/3 (17 ms) -33: [----------] 4 tests from ChainChanges/Pdb2gmxTest (66 ms total) +33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/3 (16 ms) +33: [----------] 4 tests from ChainChanges/Pdb2gmxTest (68 ms total) 33: 33: [----------] Global test environment tear-down -33: [==========] 28 tests from 4 test cases ran. (937 ms total) +33: [==========] 28 tests from 4 test cases ran. (870 ms total) 33: [ PASSED ] 28 tests. -33/54 Test #33: Pdb2gmx3Test ........................ Passed 0.96 sec +33/54 Test #33: Pdb2gmx3Test ........................ Passed 0.89 sec test 34 Start 34: CorrelationsTest @@ -18971,31 +19006,31 @@ 34: [----------] Global test environment set-up. 34: [----------] 10 tests from AutocorrTest 34: [ RUN ] AutocorrTest.EacNormal -34: [ OK ] AutocorrTest.EacNormal (12 ms) +34: [ OK ] AutocorrTest.EacNormal (33 ms) 34: [ RUN ] AutocorrTest.EacNoNormalize -34: [ OK ] AutocorrTest.EacNoNormalize (9 ms) +34: [ OK ] AutocorrTest.EacNoNormalize (32 ms) 34: [ RUN ] AutocorrTest.EacCos -34: [ OK ] AutocorrTest.EacCos (17 ms) +34: [ OK ] AutocorrTest.EacCos (51 ms) 34: [ RUN ] AutocorrTest.EacVector -34: [ OK ] AutocorrTest.EacVector (26 ms) +34: [ OK ] AutocorrTest.EacVector (83 ms) 34: [ RUN ] AutocorrTest.EacRcross 34: [ OK ] AutocorrTest.EacRcross (1 ms) 34: [ RUN ] AutocorrTest.EacP0 -34: [ OK ] AutocorrTest.EacP0 (28 ms) +34: [ OK ] AutocorrTest.EacP0 (100 ms) 34: [ RUN ] AutocorrTest.EacP1 -34: [ OK ] AutocorrTest.EacP1 (27 ms) +34: [ OK ] AutocorrTest.EacP1 (92 ms) 34: [ RUN ] AutocorrTest.EacP2 -34: [ OK ] AutocorrTest.EacP2 (54 ms) +34: [ OK ] AutocorrTest.EacP2 (179 ms) 34: [ RUN ] AutocorrTest.EacP3 -34: [ OK ] AutocorrTest.EacP3 (5 ms) +34: [ OK ] AutocorrTest.EacP3 (2 ms) 34: [ RUN ] AutocorrTest.EacP4 -34: [ OK ] AutocorrTest.EacP4 (26 ms) -34: [----------] 10 tests from AutocorrTest (209 ms total) +34: [ OK ] AutocorrTest.EacP4 (122 ms) +34: [----------] 10 tests from AutocorrTest (696 ms total) 34: 34: [----------] 1 test from ManyAutocorrelationTest 34: [ RUN ] ManyAutocorrelationTest.Empty -34: [ OK ] ManyAutocorrelationTest.Empty (0 ms) -34: [----------] 1 test from ManyAutocorrelationTest (0 ms total) +34: [ OK ] ManyAutocorrelationTest.Empty (1 ms) +34: [----------] 1 test from ManyAutocorrelationTest (1 ms total) 34: 34: [----------] 10 tests from ExpfitTest 34: [ RUN ] ExpfitTest.EffnEXP1 @@ -19003,27 +19038,27 @@ 34: [ RUN ] ExpfitTest.EffnEXP2 34: [ OK ] ExpfitTest.EffnEXP2 (1 ms) 34: [ RUN ] ExpfitTest.EffnEXPEXP -34: [ OK ] ExpfitTest.EffnEXPEXP (2 ms) +34: [ OK ] ExpfitTest.EffnEXPEXP (0 ms) 34: [ RUN ] ExpfitTest.EffnEXP5 -34: [ OK ] ExpfitTest.EffnEXP5 (5 ms) +34: [ OK ] ExpfitTest.EffnEXP5 (2 ms) 34: [ RUN ] ExpfitTest.EffnEXP7 -34: [ OK ] ExpfitTest.EffnEXP7 (4 ms) +34: [ OK ] ExpfitTest.EffnEXP7 (2 ms) 34: [ RUN ] ExpfitTest.EffnEXP9 -34: [ OK ] ExpfitTest.EffnEXP9 (24 ms) +34: [ OK ] ExpfitTest.EffnEXP9 (20 ms) 34: [ RUN ] ExpfitTest.EffnERF -34: [ OK ] ExpfitTest.EffnERF (2 ms) +34: [ OK ] ExpfitTest.EffnERF (9 ms) 34: [ RUN ] ExpfitTest.EffnERREST 34: [ OK ] ExpfitTest.EffnERREST (1 ms) 34: [ RUN ] ExpfitTest.EffnVAC -34: [ OK ] ExpfitTest.EffnVAC (5 ms) +34: [ OK ] ExpfitTest.EffnVAC (2 ms) 34: [ RUN ] ExpfitTest.EffnPRES -34: [ OK ] ExpfitTest.EffnPRES (13 ms) -34: [----------] 10 tests from ExpfitTest (57 ms total) +34: [ OK ] ExpfitTest.EffnPRES (14 ms) +34: [----------] 10 tests from ExpfitTest (51 ms total) 34: 34: [----------] Global test environment tear-down -34: [==========] 21 tests from 3 test cases ran. (273 ms total) +34: [==========] 21 tests from 3 test cases ran. (750 ms total) 34: [ PASSED ] 21 tests. -34/54 Test #34: CorrelationsTest .................... Passed 0.29 sec +34/54 Test #34: CorrelationsTest .................... Passed 0.76 sec test 35 Start 35: AnalysisDataUnitTests @@ -19048,16 +19083,16 @@ 35: [ RUN ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly 35: [ OK ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames -35: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames (0 ms) +35: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 35: [ RUN ] AnalysisDataCommonTest/0.FullStorageWorks 35: [ OK ] AnalysisDataCommonTest/0.FullStorageWorks (0 ms) 35: [ RUN ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData -35: [ OK ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData (1 ms) +35: [ OK ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData (0 ms) 35: [ RUN ] AnalysisDataCommonTest/0.LimitedStorageWorks 35: [ OK ] AnalysisDataCommonTest/0.LimitedStorageWorks (0 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/0 (3 ms total) +35: [----------] 8 tests from AnalysisDataCommonTest/0 (2 ms total) 35: 35: [----------] 8 tests from AnalysisDataCommonTest/1, where TypeParam = (anonymous namespace)::DataSetsInputData 35: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectly @@ -19065,45 +19100,45 @@ 35: [ RUN ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly 35: [ OK ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly -35: [ OK ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly (0 ms) +35: [ OK ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames -35: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) +35: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames (0 ms) 35: [ RUN ] AnalysisDataCommonTest/1.FullStorageWorks -35: [ OK ] AnalysisDataCommonTest/1.FullStorageWorks (0 ms) +35: [ OK ] AnalysisDataCommonTest/1.FullStorageWorks (8 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData 35: [ OK ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData (0 ms) 35: [ RUN ] AnalysisDataCommonTest/1.LimitedStorageWorks -35: [ OK ] AnalysisDataCommonTest/1.LimitedStorageWorks (0 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/1 (2 ms total) +35: [ OK ] AnalysisDataCommonTest/1.LimitedStorageWorks (1 ms) +35: [----------] 8 tests from AnalysisDataCommonTest/1 (10 ms total) 35: 35: [----------] 8 tests from AnalysisDataCommonTest/2, where TypeParam = (anonymous namespace)::MultipointInputData 35: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly 35: [ OK ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly -35: [ OK ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly (0 ms) +35: [ OK ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames -35: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) +35: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames (0 ms) 35: [ RUN ] AnalysisDataCommonTest/2.FullStorageWorks 35: [ OK ] AnalysisDataCommonTest/2.FullStorageWorks (0 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData 35: [ OK ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData (0 ms) 35: [ RUN ] AnalysisDataCommonTest/2.LimitedStorageWorks -35: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (1 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/2 (4 ms total) +35: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (0 ms) +35: [----------] 8 tests from AnalysisDataCommonTest/2 (1 ms total) 35: 35: [----------] 8 tests from AnalysisDataCommonTest/3, where TypeParam = (anonymous namespace)::MultipointDataSetsInputData 35: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectly (0 ms) +35: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly 35: [ OK ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly -35: [ OK ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly 35: [ OK ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames @@ -19113,41 +19148,41 @@ 35: [ RUN ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData 35: [ OK ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData (0 ms) 35: [ RUN ] AnalysisDataCommonTest/3.LimitedStorageWorks -35: [ OK ] AnalysisDataCommonTest/3.LimitedStorageWorks (1 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/3 (3 ms total) +35: [ OK ] AnalysisDataCommonTest/3.LimitedStorageWorks (0 ms) +35: [----------] 8 tests from AnalysisDataCommonTest/3 (2 ms total) 35: 35: [----------] 4 tests from AnalysisArrayDataTest 35: [ RUN ] AnalysisArrayDataTest.CallsModuleCorrectly 35: [ OK ] AnalysisArrayDataTest.CallsModuleCorrectly (0 ms) 35: [ RUN ] AnalysisArrayDataTest.StorageWorks -35: [ OK ] AnalysisArrayDataTest.StorageWorks (0 ms) +35: [ OK ] AnalysisArrayDataTest.StorageWorks (1 ms) 35: [ RUN ] AnalysisArrayDataTest.CanSetXAxis 35: [ OK ] AnalysisArrayDataTest.CanSetXAxis (0 ms) 35: [ RUN ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount 35: [ OK ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount (0 ms) -35: [----------] 4 tests from AnalysisArrayDataTest (0 ms total) +35: [----------] 4 tests from AnalysisArrayDataTest (1 ms total) 35: 35: [----------] 6 tests from AverageModuleTest 35: [ RUN ] AverageModuleTest.BasicTest -35: [ OK ] AverageModuleTest.BasicTest (1 ms) +35: [ OK ] AverageModuleTest.BasicTest (0 ms) 35: [ RUN ] AverageModuleTest.HandlesMultipointData -35: [ OK ] AverageModuleTest.HandlesMultipointData (1 ms) +35: [ OK ] AverageModuleTest.HandlesMultipointData (0 ms) 35: [ RUN ] AverageModuleTest.HandlesMultipleDataSets -35: [ OK ] AverageModuleTest.HandlesMultipleDataSets (0 ms) +35: [ OK ] AverageModuleTest.HandlesMultipleDataSets (1 ms) 35: [ RUN ] AverageModuleTest.HandlesDataSetAveraging -35: [ OK ] AverageModuleTest.HandlesDataSetAveraging (1 ms) +35: [ OK ] AverageModuleTest.HandlesDataSetAveraging (0 ms) 35: [ RUN ] AverageModuleTest.CanCustomizeXAxis 35: [ OK ] AverageModuleTest.CanCustomizeXAxis (0 ms) 35: [ RUN ] AverageModuleTest.CanCustomizeNonUniformXAxis 35: [ OK ] AverageModuleTest.CanCustomizeNonUniformXAxis (1 ms) -35: [----------] 6 tests from AverageModuleTest (4 ms total) +35: [----------] 6 tests from AverageModuleTest (2 ms total) 35: 35: [----------] 2 tests from FrameAverageModuleTest 35: [ RUN ] FrameAverageModuleTest.BasicTest 35: [ OK ] FrameAverageModuleTest.BasicTest (0 ms) 35: [ RUN ] FrameAverageModuleTest.HandlesMultipleDataSets -35: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (1 ms) -35: [----------] 2 tests from FrameAverageModuleTest (1 ms total) +35: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (0 ms) +35: [----------] 2 tests from FrameAverageModuleTest (0 ms total) 35: 35: [----------] 7 tests from AnalysisHistogramSettingsTest 35: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromBins @@ -19170,51 +19205,51 @@ 35: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectly 35: [ OK ] SimpleHistogramModuleTest.ComputesCorrectly (1 ms) 35: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll -35: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (1 ms) -35: [----------] 2 tests from SimpleHistogramModuleTest (2 ms total) +35: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (9 ms) +35: [----------] 2 tests from SimpleHistogramModuleTest (10 ms total) 35: 35: [----------] 3 tests from WeightedHistogramModuleTest 35: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectly -35: [ OK ] WeightedHistogramModuleTest.ComputesCorrectly (1 ms) +35: [ OK ] WeightedHistogramModuleTest.ComputesCorrectly (0 ms) 35: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll -35: [ OK ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll (0 ms) +35: [ OK ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll (1 ms) 35: [ RUN ] WeightedHistogramModuleTest.HandlesMultipleDataSets 35: [ OK ] WeightedHistogramModuleTest.HandlesMultipleDataSets (0 ms) -35: [----------] 3 tests from WeightedHistogramModuleTest (2 ms total) +35: [----------] 3 tests from WeightedHistogramModuleTest (1 ms total) 35: 35: [----------] 3 tests from BinAverageModuleTest 35: [ RUN ] BinAverageModuleTest.ComputesCorrectly 35: [ OK ] BinAverageModuleTest.ComputesCorrectly (1 ms) 35: [ RUN ] BinAverageModuleTest.ComputesCorrectlyWithAll -35: [ OK ] BinAverageModuleTest.ComputesCorrectlyWithAll (1 ms) +35: [ OK ] BinAverageModuleTest.ComputesCorrectlyWithAll (0 ms) 35: [ RUN ] BinAverageModuleTest.HandlesMultipleDataSets 35: [ OK ] BinAverageModuleTest.HandlesMultipleDataSets (0 ms) -35: [----------] 3 tests from BinAverageModuleTest (3 ms total) +35: [----------] 3 tests from BinAverageModuleTest (1 ms total) 35: 35: [----------] 4 tests from AbstractAverageHistogramTest 35: [ RUN ] AbstractAverageHistogramTest.ClonesCorrectly -35: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (0 ms) +35: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (1 ms) 35: [ RUN ] AbstractAverageHistogramTest.ComputesCumulativeHistogram -35: [ OK ] AbstractAverageHistogramTest.ComputesCumulativeHistogram (1 ms) +35: [ OK ] AbstractAverageHistogramTest.ComputesCumulativeHistogram (5 ms) 35: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth -35: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth (1 ms) +35: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth (0 ms) 35: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins 35: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins (1 ms) -35: [----------] 4 tests from AbstractAverageHistogramTest (3 ms total) +35: [----------] 4 tests from AbstractAverageHistogramTest (7 ms total) 35: 35: [----------] 3 tests from LifetimeModuleTest 35: [ RUN ] LifetimeModuleTest.BasicTest -35: [ OK ] LifetimeModuleTest.BasicTest (1 ms) +35: [ OK ] LifetimeModuleTest.BasicTest (0 ms) 35: [ RUN ] LifetimeModuleTest.CumulativeTest 35: [ OK ] LifetimeModuleTest.CumulativeTest (0 ms) 35: [ RUN ] LifetimeModuleTest.HandlesMultipleDataSets 35: [ OK ] LifetimeModuleTest.HandlesMultipleDataSets (1 ms) -35: [----------] 3 tests from LifetimeModuleTest (2 ms total) +35: [----------] 3 tests from LifetimeModuleTest (1 ms total) 35: 35: [----------] Global test environment tear-down -35: [==========] 69 tests from 14 test cases ran. (29 ms total) +35: [==========] 69 tests from 14 test cases ran. (38 ms total) 35: [ PASSED ] 69 tests. -35/54 Test #35: AnalysisDataUnitTests ............... Passed 0.04 sec +35/54 Test #35: AnalysisDataUnitTests ............... Passed 0.08 sec test 36 Start 36: CoordinateIOTests @@ -19232,8 +19267,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] OutputSelectorDeathTest.RejectsBadSelection (9 ms) -36: [----------] 1 test from OutputSelectorDeathTest (9 ms total) +36: [ OK ] OutputSelectorDeathTest.RejectsBadSelection (19 ms) +36: [----------] 1 test from OutputSelectorDeathTest (19 ms total) 36: 36: [----------] 5 tests from TrajectoryFrameWriterTest 36: [ RUN ] TrajectoryFrameWriterTest.RejectsWrongFiletype @@ -19245,7 +19280,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.RejectsWrongFiletype (5 ms) +36: [ OK ] TrajectoryFrameWriterTest.RejectsWrongFiletype (3 ms) 36: [ RUN ] TrajectoryFrameWriterTest.BuilderFailsWithPdbAndNoAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19255,7 +19290,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.BuilderFailsWithPdbAndNoAtoms (6 ms) +36: [ OK ] TrajectoryFrameWriterTest.BuilderFailsWithPdbAndNoAtoms (1 ms) 36: [ RUN ] TrajectoryFrameWriterTest.BuilderFailsWithGroAndNoAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19265,7 +19300,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.BuilderFailsWithGroAndNoAtoms (5 ms) +36: [ OK ] TrajectoryFrameWriterTest.BuilderFailsWithGroAndNoAtoms (2 ms) 36: [ RUN ] TrajectoryFrameWriterTest.BuilderImplictlyAddsAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19283,10 +19318,10 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.BuilderImplictlyAddsAtoms (11 ms) +36: [ OK ] TrajectoryFrameWriterTest.BuilderImplictlyAddsAtoms (12 ms) 36: [ RUN ] TrajectoryFrameWriterTest.TNGOutputWorks 36: [ OK ] TrajectoryFrameWriterTest.TNGOutputWorks (0 ms) -36: [----------] 5 tests from TrajectoryFrameWriterTest (27 ms total) +36: [----------] 5 tests from TrajectoryFrameWriterTest (18 ms total) 36: 36: [----------] 5 tests from OutputAdapterContainer 36: [ RUN ] OutputAdapterContainer.MakeEmpty @@ -19324,7 +19359,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.RemovesExistingAtoms (6 ms) +36: [ OK ] SetAtomsTest.RemovesExistingAtoms (2 ms) 36: [ RUN ] SetAtomsTest.AddsNewAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19334,7 +19369,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.AddsNewAtoms (5 ms) +36: [ OK ] SetAtomsTest.AddsNewAtoms (2 ms) 36: [ RUN ] SetAtomsTest.ThrowsOnRequiredAtomsNotAvailable 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19344,7 +19379,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.ThrowsOnRequiredAtomsNotAvailable (4 ms) +36: [ OK ] SetAtomsTest.ThrowsOnRequiredAtomsNotAvailable (2 ms) 36: [ RUN ] SetAtomsTest.WillUseOldAtomsWhenNoNewAvailable 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19354,7 +19389,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.WillUseOldAtomsWhenNoNewAvailable (5 ms) +36: [ OK ] SetAtomsTest.WillUseOldAtomsWhenNoNewAvailable (10 ms) 36: [ RUN ] SetAtomsTest.ThrowsWhenUserAtomReplacementNotPossible 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19364,8 +19399,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.ThrowsWhenUserAtomReplacementNotPossible (3 ms) -36: [----------] 5 tests from SetAtomsTest (24 ms total) +36: [ OK ] SetAtomsTest.ThrowsWhenUserAtomReplacementNotPossible (2 ms) +36: [----------] 5 tests from SetAtomsTest (18 ms total) 36: 36: [----------] 2 tests from SetBothTimeTest 36: [ RUN ] SetBothTimeTest.StartTimeZeroWorks @@ -19396,7 +19431,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/0 (3 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/0 (2 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19406,7 +19441,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/1 (4 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/1 (1 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19416,7 +19451,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/2 (4 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/2 (10 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/3 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19426,7 +19461,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/3 (3 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/3 (2 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/4 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19436,7 +19471,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/4 (3 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/4 (2 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/5 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19446,8 +19481,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/5 (3 ms) -36: [----------] 6 tests from CoordinateFileFileFormats/TrajectoryFrameWriterTest (20 ms total) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/5 (2 ms) +36: [----------] 6 tests from CoordinateFileFileFormats/TrajectoryFrameWriterTest (19 ms total) 36: 36: [----------] 3 tests from ModuleSupported/SetAtomsSupportedFiles 36: [ RUN ] ModuleSupported/SetAtomsSupportedFiles.Works/0 @@ -19459,7 +19494,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/0 (3 ms) +36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/0 (10 ms) 36: [ RUN ] ModuleSupported/SetAtomsSupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19469,7 +19504,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/1 (3 ms) +36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/1 (2 ms) 36: [ RUN ] ModuleSupported/SetAtomsSupportedFiles.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19479,8 +19514,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/2 (3 ms) -36: [----------] 3 tests from ModuleSupported/SetAtomsSupportedFiles (9 ms total) +36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/2 (2 ms) +36: [----------] 3 tests from ModuleSupported/SetAtomsSupportedFiles (14 ms total) 36: 36: [----------] 3 tests from ModuleUnSupported/SetAtomsUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/0 @@ -19509,7 +19544,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/0 (6 ms) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/0 (12 ms) 36: [ RUN ] ModuleSupported/AnyOutputSupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19527,7 +19562,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/1 (5 ms) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/1 (4 ms) 36: [ RUN ] ModuleSupported/AnyOutputSupportedFiles.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19545,7 +19580,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/2 (5 ms) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/2 (12 ms) 36: [ RUN ] ModuleSupported/AnyOutputSupportedFiles.Works/3 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19564,7 +19599,7 @@ 36: files if necessary. 36: 36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/3 (4 ms) -36: [----------] 4 tests from ModuleSupported/AnyOutputSupportedFiles (20 ms total) +36: [----------] 4 tests from ModuleSupported/AnyOutputSupportedFiles (32 ms total) 36: 36: [----------] 3 tests from ModuleSupported/SetVelocitySupportedFiles 36: [ RUN ] ModuleSupported/SetVelocitySupportedFiles.Works/0 @@ -19576,7 +19611,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/0 (3 ms) +36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/0 (1 ms) 36: [ RUN ] ModuleSupported/SetVelocitySupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19586,7 +19621,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/1 (2 ms) +36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/1 (6 ms) 36: [ RUN ] ModuleSupported/SetVelocitySupportedFiles.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19597,7 +19632,7 @@ 36: files if necessary. 36: 36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/2 (2 ms) -36: [----------] 3 tests from ModuleSupported/SetVelocitySupportedFiles (7 ms total) +36: [----------] 3 tests from ModuleSupported/SetVelocitySupportedFiles (9 ms total) 36: 36: [----------] 3 tests from ModuleUnSupported/SetVelocityUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetVelocityUnSupportedFiles.Works/0 @@ -19618,7 +19653,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetForceSupportedFiles.Works/0 (2 ms) +36: [ OK ] ModuleSupported/SetForceSupportedFiles.Works/0 (10 ms) 36: [ RUN ] ModuleSupported/SetForceSupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19629,7 +19664,7 @@ 36: files if necessary. 36: 36: [ OK ] ModuleSupported/SetForceSupportedFiles.Works/1 (2 ms) -36: [----------] 2 tests from ModuleSupported/SetForceSupportedFiles (4 ms total) +36: [----------] 2 tests from ModuleSupported/SetForceSupportedFiles (12 ms total) 36: 36: [----------] 4 tests from ModuleUnSupported/SetForceUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetForceUnSupportedFiles.Works/0 @@ -19669,12 +19704,12 @@ 36: [ RUN ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/0 36: [ OK ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/0 (0 ms) 36: [ RUN ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/1 -36: [ OK ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/1 (1 ms) +36: [ OK ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/1 (0 ms) 36: [ RUN ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/2 36: [ OK ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/2 (0 ms) 36: [ RUN ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/3 36: [ OK ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/3 (0 ms) -36: [----------] 4 tests from ModuleUnSupported/SetPrecisionUnSupportedFiles (1 ms total) +36: [----------] 4 tests from ModuleUnSupported/SetPrecisionUnSupportedFiles (0 ms total) 36: 36: [----------] 4 tests from ModuleSupported/NoOptionalOutput 36: [ RUN ] ModuleSupported/NoOptionalOutput.Works/0 @@ -19686,7 +19721,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/NoOptionalOutput.Works/0 (2 ms) +36: [ OK ] ModuleSupported/NoOptionalOutput.Works/0 (10 ms) 36: [ RUN ] ModuleSupported/NoOptionalOutput.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19696,7 +19731,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/NoOptionalOutput.Works/1 (1 ms) +36: [ OK ] ModuleSupported/NoOptionalOutput.Works/1 (2 ms) 36: [ RUN ] ModuleSupported/NoOptionalOutput.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19706,7 +19741,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/NoOptionalOutput.Works/2 (3 ms) +36: [ OK ] ModuleSupported/NoOptionalOutput.Works/2 (2 ms) 36: [ RUN ] ModuleSupported/NoOptionalOutput.Works/3 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19716,13 +19751,13 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/NoOptionalOutput.Works/3 (1 ms) -36: [----------] 4 tests from ModuleSupported/NoOptionalOutput (7 ms total) +36: [ OK ] ModuleSupported/NoOptionalOutput.Works/3 (2 ms) +36: [----------] 4 tests from ModuleSupported/NoOptionalOutput (16 ms total) 36: 36: [----------] Global test environment tear-down -36: [==========] 64 tests from 19 test cases ran. (132 ms total) +36: [==========] 64 tests from 19 test cases ran. (161 ms total) 36: [ PASSED ] 64 tests. -36/54 Test #36: CoordinateIOTests ................... Passed 0.15 sec +36/54 Test #36: CoordinateIOTests ................... Passed 0.19 sec test 37 Start 37: TrajectoryAnalysisUnitTests @@ -19766,7 +19801,7 @@ 37: Total number of atoms in clusters = 8 37: cmid: 1, cmax: 6, max_size: 2 37: 50%100%cmid: 2, cmax: 6, max_size: 2 -37: 50%100%[ OK ] ClustsizeTest.MolShortCutoff (0 ms) +37: 50%100%[ OK ] ClustsizeTest.MolShortCutoff (1 ms) 37: [ RUN ] ClustsizeTest.MolCSize 37: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -19775,7 +19810,7 @@ 37: Total number of atoms in clusters = 8 37: cmid: 2, cmax: 4, max_size: 2 37: 50%100%cmid: 2, cmax: 6, max_size: 2 -37: 50%100%[ OK ] ClustsizeTest.MolCSize (1 ms) +37: 50%100%[ OK ] ClustsizeTest.MolCSize (0 ms) 37: [----------] 5 tests from ClustsizeTest (4 ms total) 37: 37: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest @@ -19799,7 +19834,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory (1 ms) +37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory (10 ms) 37: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset 37: Reading frames from gro file 'Test system', 8 atoms. 37: Reading frame 0 time 0.000 @@ -19816,10 +19851,10 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (2 ms) +37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (1 ms) 37: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory -37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory (0 ms) -37: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (4 ms total) +37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory (1 ms) +37: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (13 ms total) 37: 37: [----------] 11 tests from AngleModuleTest 37: [ RUN ] AngleModuleTest.ComputesSimpleAngles @@ -19838,7 +19873,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesSimpleAngles (2 ms) +37: [ OK ] AngleModuleTest.ComputesSimpleAngles (10 ms) 37: [ RUN ] AngleModuleTest.ComputesDihedrals 37: 37: WARNING: If there are molecules in the input trajectory file @@ -19855,7 +19890,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesDihedrals (2 ms) +37: [ OK ] AngleModuleTest.ComputesDihedrals (1 ms) 37: [ RUN ] AngleModuleTest.ComputesVectorPairAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -19872,7 +19907,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesVectorPairAngles (1 ms) +37: [ OK ] AngleModuleTest.ComputesVectorPairAngles (2 ms) 37: [ RUN ] AngleModuleTest.ComputesVectorPlanePairAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -19906,7 +19941,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesPlaneZAxisAngles (2 ms) +37: [ OK ] AngleModuleTest.ComputesPlaneZAxisAngles (1 ms) 37: [ RUN ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -19923,7 +19958,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles (1 ms) +37: [ OK ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles (10 ms) 37: [ RUN ] AngleModuleTest.ComputesVectorTimeZeroAngles 37: Reading frames from gro file 'Test system for different angles', 33 atoms. 37: Reading frame 0 time 0.000 @@ -19959,7 +19994,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesMultipleAngles (2 ms) +37: [ OK ] AngleModuleTest.ComputesMultipleAngles (6 ms) 37: [ RUN ] AngleModuleTest.HandlesDynamicSelections 37: 37: WARNING: If there are molecules in the input trajectory file @@ -19993,7 +20028,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorAngles (2 ms) +37: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorAngles (9 ms) 37: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20010,8 +20045,8 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles (2 ms) -37: [----------] 11 tests from AngleModuleTest (19 ms total) +37: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles (1 ms) +37: [----------] 11 tests from AngleModuleTest (47 ms total) 37: 37: [----------] 4 tests from ConvertTrjModuleTest 37: [ RUN ] ConvertTrjModuleTest.WritesNormalOutput @@ -20019,20 +20054,20 @@ 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: Analyzed 1 frames, last time 0.000 -37: [ OK ] ConvertTrjModuleTest.WritesNormalOutput (5 ms) +37: [ OK ] ConvertTrjModuleTest.WritesNormalOutput (6 ms) 37: [ RUN ] ConvertTrjModuleTest.WritesAtomSubset 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: Analyzed 1 frames, last time 0.000 -37: [ OK ] ConvertTrjModuleTest.WritesAtomSubset (5 ms) +37: [ OK ] ConvertTrjModuleTest.WritesAtomSubset (18 ms) 37: [ RUN ] ConvertTrjModuleTest.WorksWithAtomAdding 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading frames from pdb file Reading frame 0 time 0.000 '', 24 atoms 37: Reading frame 1 time 0.000 Last frame 1 time 0.000 37: Analyzed 2 frames, last time 0.000 -37: [ OK ] ConvertTrjModuleTest.WorksWithAtomAdding (0 ms) +37: [ OK ] ConvertTrjModuleTest.WorksWithAtomAdding (1 ms) 37: [ RUN ] ConvertTrjModuleTest.WorksWithAtomsAndSelection 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -20040,7 +20075,7 @@ 37: Reading frame 1 time 0.000 Last frame 1 time 0.000 37: Analyzed 2 frames, last time 0.000 37: [ OK ] ConvertTrjModuleTest.WorksWithAtomsAndSelection (1 ms) -37: [----------] 4 tests from ConvertTrjModuleTest (12 ms total) +37: [----------] 4 tests from ConvertTrjModuleTest (26 ms total) 37: 37: [----------] 3 tests from DistanceModuleTest 37: [ RUN ] DistanceModuleTest.ComputesDistances @@ -20063,7 +20098,7 @@ 37: Number of samples: 5 37: Average distance: 1.43246 nm 37: Standard deviation: 0.96700 nm -37: [ OK ] DistanceModuleTest.ComputesDistances (2 ms) +37: [ OK ] DistanceModuleTest.ComputesDistances (10 ms) 37: [ RUN ] DistanceModuleTest.ComputesMultipleDistances 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20088,7 +20123,7 @@ 37: Number of samples: 4 37: Average distance: 1.81066 nm 37: Standard deviation: 0.79289 nm -37: [ OK ] DistanceModuleTest.ComputesMultipleDistances (3 ms) +37: [ OK ] DistanceModuleTest.ComputesMultipleDistances (2 ms) 37: [ RUN ] DistanceModuleTest.HandlesDynamicSelections 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20110,7 +20145,7 @@ 37: Average distance: 1.72076 nm 37: Standard deviation: 1.24839 nm 37: [ OK ] DistanceModuleTest.HandlesDynamicSelections (2 ms) -37: [----------] 3 tests from DistanceModuleTest (7 ms total) +37: [----------] 3 tests from DistanceModuleTest (14 ms total) 37: 37: [----------] 2 tests from ExtractClusterModuleTest 37: [ RUN ] ExtractClusterModuleTest.WorksWithAllAtoms @@ -20123,8 +20158,8 @@ 37: Reading frame 0 time 0.000 Reading frame 1 time 0.002 Reading frame 2 time 0.004 Reading frame 3 time 0.006 Reading frame 4 time 0.008 Reading frame 5 time 0.010 Reading frame 6 time 0.012 Reading frame 7 time 0.014 Reading frame 8 time 0.016 Reading frame 9 time 0.018 Reading frame 10 time 0.020 Reading frame 11 time 0.022 Reading frame 12 time 0.024 Reading frame 13 time 0.026 Reading frame 14 time 0.028 Reading frame 15 time 0.030 Reading frame 16 time 0.032 Reading frame 17 time 0.034 Reading frame 18 time 0.036 Reading frame 19 time 0.038 Reading frame 20 time 0.040 37: Analyzed 26 frames, last time 0.050 37: There are 8 clusters containing 26 structures, highest framenr is 25 -37: [ OK ] ExtractClusterModuleTest.WorksWithAtomSubset (1 ms) -37: [----------] 2 tests from ExtractClusterModuleTest (2 ms total) +37: [ OK ] ExtractClusterModuleTest.WorksWithAtomSubset (10 ms) +37: [----------] 2 tests from ExtractClusterModuleTest (11 ms total) 37: 37: [----------] 2 tests from FreeVolumeModuleTest 37: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolume @@ -20188,7 +20223,7 @@ 37: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 37: Molecular van der Waals volume assuming homogeneity: 0.1256 +/- 0.0000 nm^3 37: Fractional free volume 0.194 +/- 0.000 -37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (50 ms) +37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (119 ms) 37: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolumeSelection 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) @@ -20240,8 +20275,8 @@ 37: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 37: Molecular van der Waals volume assuming homogeneity: 0.1247 +/- 0.0000 nm^3 37: Fractional free volume 0.200 +/- 0.000 -37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (50 ms) -37: [----------] 2 tests from FreeVolumeModuleTest (100 ms total) +37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (112 ms) +37: [----------] 2 tests from FreeVolumeModuleTest (231 ms total) 37: 37: [----------] 9 tests from PairDistanceModuleTest 37: [ RUN ] PairDistanceModuleTest.ComputesAllDistances @@ -20260,7 +20295,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesAllDistances (1 ms) +37: [ OK ] PairDistanceModuleTest.ComputesAllDistances (2 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20277,7 +20312,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff (2 ms) +37: [ OK ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff (1 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20294,7 +20329,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff (2 ms) +37: [ OK ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff (10 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesMaxDistance 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20311,7 +20346,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (1 ms) +37: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (2 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20328,7 +20363,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff (2 ms) +37: [ OK ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff (6 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20379,7 +20414,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwritten (2 ms) +37: [ OK ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwritten (10 ms) 37: [ RUN ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwrittenWithExplicitGroup 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20397,7 +20432,7 @@ 37: files if necessary. 37: 37: [ OK ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwrittenWithExplicitGroup (1 ms) -37: [----------] 9 tests from PairDistanceModuleTest (14 ms total) +37: [----------] 9 tests from PairDistanceModuleTest (35 ms total) 37: 37: [----------] 5 tests from RdfModuleTest 37: [ RUN ] RdfModuleTest.BasicTest @@ -20416,12 +20451,12 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.BasicTest (14 ms) +37: [ OK ] RdfModuleTest.BasicTest (30 ms) 37: [ RUN ] RdfModuleTest.SelectionsSolelyFromIndexFileWork 37: Reading frames from gro file '216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984', 648 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: Analyzed 1 frames, last time 0.000 -37: [ OK ] RdfModuleTest.SelectionsSolelyFromIndexFileWork (8 ms) +37: [ OK ] RdfModuleTest.SelectionsSolelyFromIndexFileWork (21 ms) 37: [ RUN ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20438,7 +20473,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork (14 ms) +37: [ OK ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork (29 ms) 37: [ RUN ] RdfModuleTest.CalculatesSurf 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20455,7 +20490,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.CalculatesSurf (8 ms) +37: [ OK ] RdfModuleTest.CalculatesSurf (20 ms) 37: [ RUN ] RdfModuleTest.CalculatesXY 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20472,8 +20507,8 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.CalculatesXY (15 ms) -37: [----------] 5 tests from RdfModuleTest (59 ms total) +37: [ OK ] RdfModuleTest.CalculatesXY (35 ms) +37: [----------] 5 tests from RdfModuleTest (136 ms total) 37: 37: [----------] 5 tests from SasaModuleTest 37: [ RUN ] SasaModuleTest.BasicTest @@ -20520,7 +20555,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.BasicTest (7 ms) +37: [ OK ] SasaModuleTest.BasicTest (15 ms) 37: [ RUN ] SasaModuleTest.HandlesSelectedResidues 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -20565,7 +20600,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.HandlesSelectedResidues (5 ms) +37: [ OK ] SasaModuleTest.HandlesSelectedResidues (9 ms) 37: [ RUN ] SasaModuleTest.WritesConnollySurfaceWithSolute 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -20610,7 +20645,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.WritesConnollySurfaceWithSolute (3 ms) +37: [ OK ] SasaModuleTest.WritesConnollySurfaceWithSolute (12 ms) 37: [ RUN ] SasaModuleTest.HandlesDynamicOutputGroup 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -20655,7 +20690,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (5 ms) +37: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (4 ms) 37: [ RUN ] SasaModuleTest.HandlesDynamicCalculationGroup 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -20700,8 +20735,8 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (5 ms) -37: [----------] 5 tests from SasaModuleTest (25 ms total) +37: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (17 ms) +37: [----------] 5 tests from SasaModuleTest (58 ms total) 37: 37: [----------] 8 tests from SelectModuleTest 37: [ RUN ] SelectModuleTest.BasicTest @@ -20741,7 +20776,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (2 ms) +37: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (10 ms) 37: [ RUN ] SelectModuleTest.HandlesPDBOutputWithPDBInput 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -20760,7 +20795,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (3 ms) +37: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (2 ms) 37: [ RUN ] SelectModuleTest.HandlesMaxPDBOutput 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -20779,7 +20814,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (2 ms) +37: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (3 ms) 37: [ RUN ] SelectModuleTest.HandlesSelectedPDBOutput 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -20798,7 +20833,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (2 ms) +37: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (10 ms) 37: [ RUN ] SelectModuleTest.NormalizesSizes 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20832,7 +20867,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.WritesResidueNumbers (1 ms) +37: [ OK ] SelectModuleTest.WritesResidueNumbers (5 ms) 37: [ RUN ] SelectModuleTest.WritesResidueIndices 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20850,15 +20885,15 @@ 37: files if necessary. 37: 37: [ OK ] SelectModuleTest.WritesResidueIndices (2 ms) -37: [----------] 8 tests from SelectModuleTest (17 ms total) +37: [----------] 8 tests from SelectModuleTest (37 ms total) 37: 37: [----------] 10 tests from SurfaceAreaTest 37: [ RUN ] SurfaceAreaTest.ComputesSinglePoint 37: [ OK ] SurfaceAreaTest.ComputesSinglePoint (0 ms) 37: [ RUN ] SurfaceAreaTest.ComputesTwoPoints -37: [ OK ] SurfaceAreaTest.ComputesTwoPoints (0 ms) +37: [ OK ] SurfaceAreaTest.ComputesTwoPoints (1 ms) 37: [ RUN ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius -37: [ OK ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius (1 ms) +37: [ OK ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius (0 ms) 37: [ RUN ] SurfaceAreaTest.SurfacePoints12 37: [ OK ] SurfaceAreaTest.SurfacePoints12 (0 ms) 37: [ RUN ] SurfaceAreaTest.SurfacePoints32 @@ -20868,12 +20903,12 @@ 37: [ RUN ] SurfaceAreaTest.SurfacePoints122 37: [ OK ] SurfaceAreaTest.SurfacePoints122 (1 ms) 37: [ RUN ] SurfaceAreaTest.Computes100Points -37: [ OK ] SurfaceAreaTest.Computes100Points (0 ms) +37: [ OK ] SurfaceAreaTest.Computes100Points (8 ms) 37: [ RUN ] SurfaceAreaTest.Computes100PointsWithRectangularPBC 37: [ OK ] SurfaceAreaTest.Computes100PointsWithRectangularPBC (1 ms) 37: [ RUN ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC -37: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (2 ms) -37: [----------] 10 tests from SurfaceAreaTest (5 ms total) +37: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (1 ms) +37: [----------] 10 tests from SurfaceAreaTest (13 ms total) 37: 37: [----------] 4 tests from TopologyInformation 37: [ RUN ] TopologyInformation.CantWorkWithoutReadingAFile @@ -20887,7 +20922,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TopologyInformation.WorksWithGroFile (2 ms) +37: [ OK ] TopologyInformation.WorksWithGroFile (6 ms) 37: [ RUN ] TopologyInformation.WorksWithPdbFile 37: 37: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -20897,14 +20932,14 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TopologyInformation.WorksWithPdbFile (1 ms) +37: [ OK ] TopologyInformation.WorksWithPdbFile (2 ms) 37: [ RUN ] TopologyInformation.WorksWithTprFromPdbFile 37: 37: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary/TopologyInformation_WorksWithTprFromPdbFile_lysozyme.mdp]: 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -322115587 +37: Setting the LD random seed to -1879130253 37: Generated 330891 of the 330891 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 330891 of the 330891 1-4 parameter combinations @@ -20938,8 +20973,8 @@ 37: There are: 10 Protein residues 37: Analysing Protein... 37: This run will generate roughly 0 Mb of data -37: [ OK ] TopologyInformation.WorksWithTprFromPdbFile (229 ms) -37: [----------] 4 tests from TopologyInformation (232 ms total) +37: [ OK ] TopologyInformation.WorksWithTprFromPdbFile (523 ms) +37: [----------] 4 tests from TopologyInformation (531 ms total) 37: 37: [----------] 4 tests from TrajectoryModuleTest 37: [ RUN ] TrajectoryModuleTest.BasicTest @@ -20960,7 +20995,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryModuleTest.BasicTest (2 ms) +37: [ OK ] TrajectoryModuleTest.BasicTest (10 ms) 37: [ RUN ] TrajectoryModuleTest.PlotsXOnly 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -20979,7 +21014,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryModuleTest.PlotsXOnly (2 ms) +37: [ OK ] TrajectoryModuleTest.PlotsXOnly (1 ms) 37: [ RUN ] TrajectoryModuleTest.HandlesNoVelocities 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -20998,7 +21033,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryModuleTest.HandlesNoVelocities (2 ms) +37: [ OK ] TrajectoryModuleTest.HandlesNoVelocities (6 ms) 37: [ RUN ] TrajectoryModuleTest.HandlesNoForces 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -21017,8 +21052,8 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryModuleTest.HandlesNoForces (1 ms) -37: [----------] 4 tests from TrajectoryModuleTest (7 ms total) +37: [ OK ] TrajectoryModuleTest.HandlesNoForces (2 ms) +37: [----------] 4 tests from TrajectoryModuleTest (20 ms total) 37: 37: [----------] 5 tests from UnionFinderTest 37: [ RUN ] UnionFinderTest.WorksEmpty @@ -21031,7 +21066,7 @@ 37: [ OK ] UnionFinderTest.LongRightMerge (0 ms) 37: [ RUN ] UnionFinderTest.LongLeftMerge 37: [ OK ] UnionFinderTest.LongLeftMerge (0 ms) -37: [----------] 5 tests from UnionFinderTest (1 ms total) +37: [----------] 5 tests from UnionFinderTest (0 ms total) 37: 37: [----------] 1 test from MappedUnionFinderTest 37: [ RUN ] MappedUnionFinderTest.BasicMerges @@ -21039,9 +21074,9 @@ 37: [----------] 1 test from MappedUnionFinderTest (0 ms total) 37: 37: [----------] Global test environment tear-down -37: [==========] 82 tests from 16 test cases ran. (508 ms total) +37: [==========] 82 tests from 16 test cases ran. (1176 ms total) 37: [ PASSED ] 82 tests. -37/54 Test #37: TrajectoryAnalysisUnitTests ......... Passed 0.52 sec +37/54 Test #37: TrajectoryAnalysisUnitTests ......... Passed 1.21 sec test 38 Start 38: EnergyAnalysisUnitTests @@ -21058,8 +21093,8 @@ 38: 38: 38: Wrote 8 lambda values with 101 samples as 808 dH data blocks to /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary/DhdlTest_ExtractDhdl_dhdl.xvg -38: [ OK ] DhdlTest.ExtractDhdl (5 ms) -38: [----------] 1 test from DhdlTest (5 ms total) +38: [ OK ] DhdlTest.ExtractDhdl (8 ms) +38: [----------] 1 test from DhdlTest (9 ms total) 38: 38: [----------] 1 test from OriresTest 38: [ RUN ] OriresTest.ExtractOrires @@ -21070,8 +21105,8 @@ 38: End your selection with 0 38: Selecting all 7 orientation restraints 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Reading energy frame 2 time 0.004 Reading energy frame 3 time 0.006 Reading energy frame 4 time 0.008 Reading energy frame 5 time 0.010 Reading energy frame 6 time 0.012 Reading energy frame 7 time 0.014 Reading energy frame 8 time 0.016 Reading energy frame 9 time 0.018 Reading energy frame 10 time 0.020 Last energy frame read 10 time 0.020 -38: [ OK ] OriresTest.ExtractOrires (6 ms) -38: [----------] 1 test from OriresTest (6 ms total) +38: [ OK ] OriresTest.ExtractOrires (13 ms) +38: [----------] 1 test from OriresTest (13 ms total) 38: 38: [----------] 3 tests from EnergyTest 38: [ RUN ] EnergyTest.ExtractEnergy @@ -21161,7 +21196,7 @@ 38: Pressure 5.34371 4.1 605.307 -4.88771 (bar) 38: Box-Z 2.92457 0.0054 0.0151558 0.0234974 (nm) 38: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) -38: [ OK ] EnergyTest.ExtractEnergyMixed (2 ms) +38: [ OK ] EnergyTest.ExtractEnergyMixed (1 ms) 38: [----------] 3 tests from EnergyTest (4 ms total) 38: 38: [----------] 2 tests from ViscosityTest @@ -21186,7 +21221,7 @@ 38: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 38: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 38: Pressure 5.34371 4.1 605.307 -4.88771 (bar) -38: [ OK ] ViscosityTest.EinsteinViscosity (18 ms) +38: [ OK ] ViscosityTest.EinsteinViscosity (123 ms) 38: [ RUN ] ViscosityTest.EinsteinViscosityIntegral 38: Opened /build/reproducible-path/gromacs-2020.6/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 @@ -21208,13 +21243,13 @@ 38: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 38: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 38: Pressure 5.34371 4.1 605.307 -4.88771 (bar) -38: [ OK ] ViscosityTest.EinsteinViscosityIntegral (19 ms) -38: [----------] 2 tests from ViscosityTest (38 ms total) +38: [ OK ] ViscosityTest.EinsteinViscosityIntegral (83 ms) +38: [----------] 2 tests from ViscosityTest (206 ms total) 38: 38: [----------] Global test environment tear-down -38: [==========] 7 tests from 4 test cases ran. (53 ms total) +38: [==========] 7 tests from 4 test cases ran. (232 ms total) 38: [ PASSED ] 7 tests. -38/54 Test #38: EnergyAnalysisUnitTests ............. Passed 0.06 sec +38/54 Test #38: EnergyAnalysisUnitTests ............. Passed 0.27 sec test 39 Start 39: ToolUnitTests @@ -21228,7 +21263,7 @@ 39: For a correct single-point energy evaluation with nsteps = 0, use 39: continuation = yes to avoid constraining the input coordinates. 39: -39: Setting the LD random seed to 2107636685 +39: Setting the LD random seed to 1943418751 39: Generated 330891 of the 330891 non-bonded parameter combinations 39: Generating 1-4 interactions: fudge = 0.5 39: Generated 330891 of the 330891 1-4 parameter combinations @@ -21274,7 +21309,7 @@ 39: comm-mode = Linear 39: nstcomm = 100 39: bd-fric = 0 -39: ld-seed = 2107636685 +39: ld-seed = 1943418751 39: emtol = 10 39: emstep = 0.01 39: niter = 20 @@ -24191,12 +24226,12 @@ 39: Compressed X: 156 (total 156 atoms) 39: Or. Res. Fit: 156 (total 156 atoms) 39: QMMM : 156 (total 156 atoms) -39: [ OK ] DumpTest.WorksWithTpr (6 ms) +39: [ OK ] DumpTest.WorksWithTpr (36 ms) 39: [ RUN ] DumpTest.WorksWithTprAndMdpWriting 39: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary/DumpTest_lysozyme.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 39: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary/DumpTest_lysozyme.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 39: [ OK ] DumpTest.WorksWithTprAndMdpWriting (1 ms) -39: [----------] 2 tests from DumpTest (7 ms total) +39: [----------] 2 tests from DumpTest (37 ms total) 39: 39: [----------] 4 tests from ReportMethodsTest 39: @@ -24204,7 +24239,7 @@ 39: For a correct single-point energy evaluation with nsteps = 0, use 39: continuation = yes to avoid constraining the input coordinates. 39: -39: Setting the LD random seed to -34734851 +39: Setting the LD random seed to -293732929 39: Generated 330891 of the 330891 non-bonded parameter combinations 39: Generating 1-4 interactions: fudge = 0.5 39: Generated 330891 of the 330891 1-4 parameter combinations @@ -24270,7 +24305,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 (2 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 (10 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 39: Will write tng: Trajectory file (tng format) 39: Group 0 ( System) has 6 elements @@ -24334,7 +24369,7 @@ 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' 39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (1 ms) -39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (7 ms total) +39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (15 ms total) 39: 39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 @@ -24347,7 +24382,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 (1 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 (0 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/1 39: Will write trr: Trajectory in portable xdr format 39: Group 0 ( System) has 6 elements @@ -24360,7 +24395,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/1 (0 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/1 (1 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/2 39: Will write trr: Trajectory in portable xdr format 39: Group 0 ( System) has 6 elements @@ -24399,7 +24434,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 (1 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 (0 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 39: Will write trr: Trajectory in portable xdr format 39: Group 0 ( System) has 6 elements @@ -24410,13 +24445,13 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 (0 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 (1 ms) 39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile (2 ms total) 39: 39: [----------] Global test environment tear-down -39: [==========] 18 tests from 4 test cases ran. (517 ms total) +39: [==========] 18 tests from 4 test cases ran. (1127 ms total) 39: [ PASSED ] 18 tests. -39/54 Test #39: ToolUnitTests ....................... Passed 0.53 sec +39/54 Test #39: ToolUnitTests ....................... Passed 1.16 sec test 40 Start 40: FileIOTests @@ -24437,19 +24472,19 @@ 40: [ RUN ] MrcSerializer.DefaultHeaderHasRightSerialSize 40: [ OK ] MrcSerializer.DefaultHeaderHasRightSerialSize (0 ms) 40: [ RUN ] MrcSerializer.DefaultHeaderIdenticalAfterRoundTrip -40: [ OK ] MrcSerializer.DefaultHeaderIdenticalAfterRoundTrip (1 ms) -40: [----------] 3 tests from MrcSerializer (1 ms total) +40: [ OK ] MrcSerializer.DefaultHeaderIdenticalAfterRoundTrip (0 ms) +40: [----------] 3 tests from MrcSerializer (0 ms total) 40: 40: [----------] 4 tests from MrcDensityMap 40: [ RUN ] MrcDensityMap.RoundTripIsIdempotent -40: [ OK ] MrcDensityMap.RoundTripIsIdempotent (2 ms) +40: [ OK ] MrcDensityMap.RoundTripIsIdempotent (1 ms) 40: [ RUN ] MrcDensityMap.ThrowsFileIOErrorWhenFileNotPresent 40: [ OK ] MrcDensityMap.ThrowsFileIOErrorWhenFileNotPresent (0 ms) 40: [ RUN ] MrcDensityMap.ReadsCoordinateTransformationFromFile 40: [ OK ] MrcDensityMap.ReadsCoordinateTransformationFromFile (0 ms) 40: [ RUN ] MrcDensityMap.ReadsDensityDataFromFile -40: [ OK ] MrcDensityMap.ReadsDensityDataFromFile (1 ms) -40: [----------] 4 tests from MrcDensityMap (4 ms total) +40: [ OK ] MrcDensityMap.ReadsDensityDataFromFile (0 ms) +40: [----------] 4 tests from MrcDensityMap (2 ms total) 40: 40: [----------] 8 tests from MrcDensityMapHeaderTest 40: [ RUN ] MrcDensityMapHeaderTest.DataSizeIsZeroForDefaultHeader @@ -24523,8 +24558,8 @@ 40: 40: [----------] 1 test from FileIOXdrSerializerTest 40: [ RUN ] FileIOXdrSerializerTest.SizeIsCorrect -40: [ OK ] FileIOXdrSerializerTest.SizeIsCorrect (1 ms) -40: [----------] 1 test from FileIOXdrSerializerTest (1 ms total) +40: [ OK ] FileIOXdrSerializerTest.SizeIsCorrect (0 ms) +40: [----------] 1 test from FileIOXdrSerializerTest (0 ms total) 40: 40: [----------] 2 tests from TngTest 40: [ RUN ] TngTest.CanOpenTngFile @@ -24537,19 +24572,19 @@ 40: 40: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest 40: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 -40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (0 ms) +40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (8 ms) 40: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 -40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) +40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (0 ms) 40: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (1 ms) 40: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 -40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (1 ms) -40: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (3 ms total) +40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) +40: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (9 ms total) 40: 40: [----------] Global test environment tear-down -40: [==========] 33 tests from 8 test cases ran. (11 ms total) +40: [==========] 33 tests from 8 test cases ran. (12 ms total) 40: [ PASSED ] 33 tests. -40/54 Test #40: FileIOTests ......................... Passed 0.03 sec +40/54 Test #40: FileIOTests ......................... Passed 0.05 sec test 41 Start 41: SelectionUnitTests @@ -24574,7 +24609,7 @@ 41: [ RUN ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology 41: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology (0 ms) 41: [ RUN ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology -41: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology (1 ms) +41: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology (0 ms) 41: [ RUN ] IndexBlockTest.CreatesSingleBlock 41: [ OK ] IndexBlockTest.CreatesSingleBlock (0 ms) 41: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksPositive @@ -24593,7 +24628,7 @@ 41: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive (0 ms) 41: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative 41: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative (0 ms) -41: [----------] 15 tests from IndexBlockTest (2 ms total) +41: [----------] 15 tests from IndexBlockTest (0 ms total) 41: 41: [----------] 11 tests from IndexMapTest 41: [ RUN ] IndexMapTest.InitializesAtomBlock @@ -24615,39 +24650,39 @@ 41: [ RUN ] IndexMapTest.MapsResidueBlocks 41: [ OK ] IndexMapTest.MapsResidueBlocks (0 ms) 41: [ RUN ] IndexMapTest.MapsResidueBlocksWithMask -41: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (1 ms) +41: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (0 ms) 41: [ RUN ] IndexMapTest.HandlesMultipleRequests 41: [ OK ] IndexMapTest.HandlesMultipleRequests (0 ms) -41: [----------] 11 tests from IndexMapTest (3 ms total) +41: [----------] 11 tests from IndexMapTest (1 ms total) 41: 41: [----------] 3 tests from IndexGroupsAndNamesTest 41: [ RUN ] IndexGroupsAndNamesTest.containsNames 41: [ OK ] IndexGroupsAndNamesTest.containsNames (0 ms) 41: [ RUN ] IndexGroupsAndNamesTest.throwsWhenNameMissing -41: [ OK ] IndexGroupsAndNamesTest.throwsWhenNameMissing (0 ms) +41: [ OK ] IndexGroupsAndNamesTest.throwsWhenNameMissing (1 ms) 41: [ RUN ] IndexGroupsAndNamesTest.groupIndicesCorrect 41: [ OK ] IndexGroupsAndNamesTest.groupIndicesCorrect (0 ms) 41: [----------] 3 tests from IndexGroupsAndNamesTest (1 ms total) 41: 41: [----------] 15 tests from NeighborhoodSearchTest 41: [ RUN ] NeighborhoodSearchTest.SimpleSearch -41: [ OK ] NeighborhoodSearchTest.SimpleSearch (22 ms) +41: [ OK ] NeighborhoodSearchTest.SimpleSearch (20 ms) 41: [ RUN ] NeighborhoodSearchTest.SimpleSearchXY -41: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (17 ms) +41: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (15 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchBox -41: [ OK ] NeighborhoodSearchTest.GridSearchBox (2 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearchBox (10 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchTriclinic -41: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (7 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (12 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearch2DPBC -41: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (3 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (2 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchNoPBC 41: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (1 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchXYBox -41: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (2 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (1 ms) 41: [ RUN ] NeighborhoodSearchTest.SimpleSelfPairsSearch 41: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (0 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSelfPairsSearch -41: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (27 ms) +41: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (49 ms) 41: [ RUN ] NeighborhoodSearchTest.HandlesConcurrentSearches 41: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (0 ms) 41: [ RUN ] NeighborhoodSearchTest.HandlesNoPBC @@ -24659,12 +24694,12 @@ 41: [ RUN ] NeighborhoodSearchTest.SimpleSearchExclusions 41: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (2 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchExclusions -41: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (1 ms) -41: [----------] 15 tests from NeighborhoodSearchTest (85 ms total) +41: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (4 ms) +41: [----------] 15 tests from NeighborhoodSearchTest (116 ms total) 41: 41: [----------] 12 tests from PositionCalculationTest 41: [ RUN ] PositionCalculationTest.ComputesAtomPositions -41: [ OK ] PositionCalculationTest.ComputesAtomPositions (0 ms) +41: [ OK ] PositionCalculationTest.ComputesAtomPositions (1 ms) 41: [ RUN ] PositionCalculationTest.ComputesResidueCOGPositions 41: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (0 ms) 41: [ RUN ] PositionCalculationTest.ComputesResidueCOMPositions @@ -24674,7 +24709,7 @@ 41: [ RUN ] PositionCalculationTest.ComputesGroupCOMPositions 41: [ OK ] PositionCalculationTest.ComputesGroupCOMPositions (0 ms) 41: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteWhole -41: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteWhole (1 ms) +41: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteWhole (0 ms) 41: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteMax 41: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (0 ms) 41: [ RUN ] PositionCalculationTest.ComputesPositionMask @@ -24682,22 +24717,22 @@ 41: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms 41: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (0 ms) 41: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms2 -41: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (0 ms) +41: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (1 ms) 41: [ RUN ] PositionCalculationTest.HandlesIdenticalStaticCalculations 41: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (0 ms) 41: [ RUN ] PositionCalculationTest.HandlesOverlappingStaticCalculations 41: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (0 ms) -41: [----------] 12 tests from PositionCalculationTest (1 ms total) +41: [----------] 12 tests from PositionCalculationTest (2 ms total) 41: 41: [----------] 29 tests from SelectionCollectionTest 41: [ RUN ] SelectionCollectionTest.HandlesNoSelections -41: [ OK ] SelectionCollectionTest.HandlesNoSelections (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesNoSelections (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType 41: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesVelocityAndForceRequests -41: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry -41: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (0 ms) 41: [ RUN ] SelectionCollectionTest.ParsesSelectionsFromFile 41: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesAtypicalWhitespace @@ -24705,9 +24740,9 @@ 41: [ RUN ] SelectionCollectionTest.HandlesInvalidRegularExpressions 41: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue -41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue2 -41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue3 41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 @@ -24715,23 +24750,23 @@ 41: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 -41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (8 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 -41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReference 41: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed 41: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup -41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed 41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (0 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo -41: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (0 ms) +41: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (1 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromMissingAtomTypes -41: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (1 ms) +41: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (0 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromMissingPDBInfo 41: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (0 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation @@ -24748,7 +24783,7 @@ 41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (0 ms) -41: [----------] 29 tests from SelectionCollectionTest (7 ms total) +41: [----------] 29 tests from SelectionCollectionTest (13 ms total) 41: 41: [----------] 14 tests from SelectionCollectionInteractiveTest 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesBasicInput @@ -24758,13 +24793,13 @@ 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput 41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput -41: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (1 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups 41: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections -41: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (0 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus -41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (1 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus 41: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus @@ -24772,157 +24807,157 @@ 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline 41: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesEmptySelections -41: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (0 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine -41: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (1 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput 41: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively 41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (0 ms) -41: [----------] 14 tests from SelectionCollectionInteractiveTest (4 ms total) +41: [----------] 14 tests from SelectionCollectionInteractiveTest (3 ms total) 41: 41: [----------] 66 tests from SelectionCollectionDataTest 41: [ RUN ] SelectionCollectionDataTest.HandlesAllNone 41: [ OK ] SelectionCollectionDataTest.HandlesAllNone (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesAtomnr -41: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesResnr -41: [ OK ] SelectionCollectionDataTest.HandlesResnr (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesResnr (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesResIndex 41: [ OK ] SelectionCollectionDataTest.HandlesResIndex (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesMolIndex 41: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesAtomname -41: [ OK ] SelectionCollectionDataTest.HandlesAtomname (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesAtomname (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPdbAtomname -41: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesAtomtype 41: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesChain -41: [ OK ] SelectionCollectionDataTest.HandlesChain (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesChain (8 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesMass -41: [ OK ] SelectionCollectionDataTest.HandlesMass (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesMass (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesCharge 41: [ OK ] SelectionCollectionDataTest.HandlesCharge (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesAltLoc 41: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesInsertCode -41: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesOccupancy -41: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBeta 41: [ OK ] SelectionCollectionDataTest.HandlesBeta (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesResname -41: [ OK ] SelectionCollectionDataTest.HandlesResname (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesResname (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesCoordinateKeywords -41: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesSameResidue 41: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesSameResidueName -41: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionKeywords -41: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesDistanceKeyword -41: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (8 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesMinDistanceKeyword -41: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesWithinKeyword -41: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword -41: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (2 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPermuteModifier -41: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (2 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPlusModifier 41: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesMergeModifier 41: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (1 ms) 41: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndCharges -41: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (0 ms) +41: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (1 ms) 41: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology -41: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (0 ms) +41: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets 41: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesSelectionNames -41: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections 41: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed -41: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections -41: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed -41: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositions 41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers -41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesWithinConstantPositions 41: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges 41: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingRealRanges -41: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode -41: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesWildcardMatching -41: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesRegexMatching 41: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBasicBoolean -41: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters -41: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions -41: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame 41: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords -41: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods -41: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositions 41: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic -41: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesNumericComparisons -41: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesArithmeticExpressions 41: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesNumericVariables -41: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesComplexNumericVariables -41: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariables -41: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariableInModifier -41: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionInVariable 41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables 41: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis -41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables 41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables -41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesUnusedVariables 41: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups -41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups 41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 -41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (1 ms) -41: [----------] 66 tests from SelectionCollectionDataTest (29 ms total) +41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (0 ms) +41: [----------] 66 tests from SelectionCollectionDataTest (44 ms total) 41: 41: [----------] 17 tests from SelectionOptionTest 41: [ RUN ] SelectionOptionTest.ParsesSimpleSelection 41: [ OK ] SelectionOptionTest.ParsesSimpleSelection (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired -41: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (0 ms) +41: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (1 ms) 41: [ RUN ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired -41: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (1 ms) +41: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (0 ms) 41: [ RUN ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired 41: [ OK ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired (0 ms) 41: [ RUN ] SelectionOptionTest.ChecksEmptySelections @@ -24932,9 +24967,9 @@ 41: [ RUN ] SelectionOptionTest.HandlesTooManySelections 41: [ OK ] SelectionOptionTest.HandlesTooManySelections (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesTooFewSelections -41: [ OK ] SelectionOptionTest.HandlesTooFewSelections (0 ms) +41: [ OK ] SelectionOptionTest.HandlesTooFewSelections (1 ms) 41: [ RUN ] SelectionOptionTest.HandlesDefaultSelectionText -41: [ OK ] SelectionOptionTest.HandlesDefaultSelectionText (1 ms) +41: [ OK ] SelectionOptionTest.HandlesDefaultSelectionText (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesAdjuster 41: [ OK ] SelectionOptionTest.HandlesAdjuster (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster @@ -24944,13 +24979,13 @@ 41: [ RUN ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster 41: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDelayedRequiredSelection -41: [ OK ] SelectionOptionTest.HandlesDelayedRequiredSelection (0 ms) +41: [ OK ] SelectionOptionTest.HandlesDelayedRequiredSelection (1 ms) 41: [ RUN ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections 41: [ OK ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDelayedOptionalSelection 41: [ OK ] SelectionOptionTest.HandlesDelayedOptionalSelection (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster -41: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (1 ms) +41: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (0 ms) 41: [----------] 17 tests from SelectionOptionTest (3 ms total) 41: 41: [----------] 9 tests from SelectionFileOptionTest @@ -24959,13 +24994,13 @@ 41: [ RUN ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions 41: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (0 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile -41: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (0 ms) +41: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (1 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFile 41: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (0 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet 41: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (0 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile -41: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (1 ms) +41: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (0 ms) 41: [ RUN ] SelectionFileOptionTest.GivesErrorWithNoFile 41: [ OK ] SelectionFileOptionTest.GivesErrorWithNoFile (0 ms) 41: [ RUN ] SelectionFileOptionTest.GivesErrorWithNonExistentFile @@ -24975,9 +25010,9 @@ 41: [----------] 9 tests from SelectionFileOptionTest (1 ms total) 41: 41: [----------] Global test environment tear-down -41: [==========] 192 tests from 11 test cases ran. (136 ms total) +41: [==========] 192 tests from 11 test cases ran. (185 ms total) 41: [ PASSED ] 192 tests. -41/54 Test #41: SelectionUnitTests .................. Passed 0.16 sec +41/54 Test #41: SelectionUnitTests .................. Passed 0.22 sec test 42 Start 42: MdrunOutputTests @@ -24992,7 +25027,7 @@ 42: 42: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput 42: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 -42: Setting the LD random seed to -304088121 +42: Setting the LD random seed to 1991503837 42: Generated 3 of the 3 non-bonded parameter combinations 42: Generating 1-4 interactions: fudge = 0.5 42: Generated 3 of the 3 1-4 parameter combinations @@ -25030,9 +25065,9 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.003 0.002 194.0 +42: Time: 0.064 0.032 199.6 42: (ns/day) (hour/ns) -42: Performance: 112.456 0.213 +42: Performance: 5.407 4.439 42: Reading frame 0 time 0.000 42: # Atoms 6 42: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -25047,9 +25082,9 @@ 42: Forces 0 42: Box 2 0.001 42: Checking file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0.xtc -42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (14 ms) +42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (104 ms) 42: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 -42: Setting the LD random seed to -290456681 +42: Setting the LD random seed to -1213494145 42: Generated 3 of the 3 non-bonded parameter combinations 42: Generating 1-4 interactions: fudge = 0.5 42: Generated 3 of the 3 1-4 parameter combinations @@ -25086,10 +25121,13 @@ 42: 42: Writing final coordinates. 42: +42: NOTE: 17 % of the run time was spent in pair search, +42: you might want to increase nstlist (this has no effect on accuracy) +42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.001 0.001 186.2 +42: Time: 0.368 0.184 199.9 42: (ns/day) (hour/ns) -42: Performance: 331.553 0.072 +42: Performance: 0.939 25.562 42: Reading frame 0 time 0.000 42: # Atoms 6 42: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -25104,9 +25142,9 @@ 42: Forces 0 42: Box 2 0.001 42: Checking file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1.xtc -42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (4 ms) +42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (244 ms) 42: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 -42: Setting the LD random seed to -118759841 +42: Setting the LD random seed to -1094980300 42: Generated 3 of the 3 non-bonded parameter combinations 42: Generating 1-4 interactions: fudge = 0.5 42: Generated 3 of the 3 1-4 parameter combinations @@ -25144,9 +25182,9 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.001 0.000 183.2 +42: Time: 0.063 0.032 199.6 42: (ns/day) (hour/ns) -42: Performance: 404.225 0.059 +42: Performance: 5.441 4.411 42: Reading frame 0 time 0.000 42: # Atoms 3 42: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -25161,8 +25199,8 @@ 42: Forces 0 42: Box 2 0.001 42: Checking file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2.xtc -42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (4 ms) -42: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (22 ms total) +42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (36 ms) +42: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (384 ms total) 42: 42: [----------] 2 tests from Argon12/OutputFiles 42: [ RUN ] Argon12/OutputFiles.FilesArePresent/0 @@ -25205,10 +25243,10 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.001 0.001 193.4 +42: Time: 2.176 1.088 200.0 42: (ns/day) (hour/ns) -42: Performance: 1939.123 0.012 -42: [ OK ] Argon12/OutputFiles.FilesArePresent/0 (4 ms) +42: Performance: 1.350 17.777 +42: [ OK ] Argon12/OutputFiles.FilesArePresent/0 (1135 ms) 42: [ RUN ] Argon12/OutputFiles.FilesArePresent/1 42: 42: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/Argon12_OutputFiles_FilesArePresent_1_input.mdp]: @@ -25248,16 +25286,19 @@ 42: 42: Writing final coordinates. 42: +42: NOTE: 23 % of the run time was spent in pair search, +42: you might want to increase nstlist (this has no effect on accuracy) +42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.001 0.001 173.6 +42: Time: 0.280 0.140 199.8 42: (ns/day) (hour/ns) -42: Performance: 1728.077 0.014 -42: [ OK ] Argon12/OutputFiles.FilesArePresent/1 (4 ms) -42: [----------] 2 tests from Argon12/OutputFiles (8 ms total) +42: Performance: 10.486 2.289 +42: [ OK ] Argon12/OutputFiles.FilesArePresent/1 (173 ms) +42: [----------] 2 tests from Argon12/OutputFiles (1308 ms total) 42: 42: [----------] 3 tests from MdrunCanWrite/Trajectories 42: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 -42: Setting the LD random seed to 2121203690 +42: Setting the LD random seed to -209851555 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -25289,13 +25330,16 @@ 42: 42: Writing final coordinates. 42: +42: NOTE: 42 % of the run time was spent in pair search, +42: you might want to increase nstlist (this has no effect on accuracy) +42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.005 0.003 197.1 +42: Time: 0.152 0.076 199.9 42: (ns/day) (hour/ns) -42: Performance: 223.322 0.107 -42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (7 ms) +42: Performance: 7.939 3.023 +42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (136 ms) 42: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 -42: Setting the LD random seed to 1040183159 +42: Setting the LD random seed to -875094211 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -25327,13 +25371,16 @@ 42: 42: Writing final coordinates. 42: +42: NOTE: 12 % of the run time was spent in pair search, +42: you might want to increase nstlist (this has no effect on accuracy) +42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.004 0.002 196.0 +42: Time: 0.544 0.272 200.0 42: (ns/day) (hour/ns) -42: Performance: 326.224 0.074 -42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (7 ms) +42: Performance: 2.222 10.801 +42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (344 ms) 42: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 -42: Setting the LD random seed to -18055970 +42: Setting the LD random seed to -478543937 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -25366,15 +25413,15 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.003 0.001 194.7 +42: Time: 1.200 0.600 200.0 42: (ns/day) (hour/ns) -42: Performance: 459.383 0.052 -42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (5 ms) -42: [----------] 3 tests from MdrunCanWrite/Trajectories (19 ms total) +42: Performance: 1.008 23.817 +42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (668 ms) +42: [----------] 3 tests from MdrunCanWrite/Trajectories (1148 ms total) 42: 42: [----------] 3 tests from MdrunCanWrite/NptTrajectories 42: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 -42: Setting the LD random seed to -1208354865 +42: Setting the LD random seed to -676516121 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -25406,13 +25453,16 @@ 42: 42: Writing final coordinates. 42: +42: NOTE: 11 % of the run time was spent in pair search, +42: you might want to increase nstlist (this has no effect on accuracy) +42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.001 0.001 190.1 +42: Time: 0.608 0.304 200.0 42: (ns/day) (hour/ns) -42: Performance: 384.700 0.062 -42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (5 ms) +42: Performance: 0.852 28.159 +42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (372 ms) 42: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 -42: Setting the LD random seed to 2146430943 +42: Setting the LD random seed to 769498543 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -25444,13 +25494,16 @@ 42: 42: Writing final coordinates. 42: +42: NOTE: 25 % of the run time was spent in pair search, +42: you might want to increase nstlist (this has no effect on accuracy) +42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.001 0.001 189.6 +42: Time: 0.096 0.048 199.8 42: (ns/day) (hour/ns) -42: Performance: 411.026 0.058 -42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (4 ms) +42: Performance: 5.381 4.460 +42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (116 ms) 42: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 -42: Setting the LD random seed to -4456454 +42: Setting the LD random seed to 1509814246 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -25483,16 +25536,16 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.001 0.001 189.3 +42: Time: 0.064 0.032 199.7 42: (ns/day) (hour/ns) -42: Performance: 396.775 0.060 -42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (5 ms) -42: [----------] 3 tests from MdrunCanWrite/NptTrajectories (14 ms total) +42: Performance: 8.065 2.976 +42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (88 ms) +42: [----------] 3 tests from MdrunCanWrite/NptTrajectories (576 ms total) 42: 42: [----------] Global test environment tear-down -42: [==========] 12 tests from 5 test cases ran. (65 ms total) +42: [==========] 12 tests from 5 test cases ran. (3418 ms total) 42: [ PASSED ] 12 tests. -42/54 Test #42: MdrunOutputTests .................... Passed 0.08 sec +42/54 Test #42: MdrunOutputTests .................... Passed 3.43 sec test 43 Start 43: MdrunModulesTests @@ -25502,7 +25555,7 @@ 43: [----------] Global test environment set-up. 43: [----------] 4 tests from DensityFittingTest 43: [ RUN ] DensityFittingTest.EnergyMinimizationEnergyCorrectInnerProduct -43: Setting the LD random seed to 1794719743 +43: Setting the LD random seed to -335626348 43: Generated 1 of the 1 non-bonded parameter combinations 43: Excluding 1 bonded neighbours molecule type 'Argon' 43: Number of degrees of freedom in T-Coupling group rest is 33.00 @@ -25529,9 +25582,9 @@ 43: Norm of force = 1.0754448e+03 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_EnergyMinimizationEnergyCorrectInnerProduct.edr as single precision energy file 43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Last energy frame read 2 time 2.000 This run will generate roughly 0 Mb of data -43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectInnerProduct (25 ms) +43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectInnerProduct (108 ms) 43: [ RUN ] DensityFittingTest.EnergyMinimizationEnergyCorrectForRelativeEntropy -43: Setting the LD random seed to -8456259 +43: Setting the LD random seed to -838531 43: Generated 1 of the 1 non-bonded parameter combinations 43: Excluding 1 bonded neighbours molecule type 'Argon' 43: Number of degrees of freedom in T-Coupling group rest is 33.00 @@ -25558,17 +25611,17 @@ 43: Norm of force = 1.2549793e+03 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_EnergyMinimizationEnergyCorrectForRelativeEntropy.edr as single precision energy file 43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Last energy frame read 2 time 2.000 This run will generate roughly 0 Mb of data -43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectForRelativeEntropy (8 ms) +43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectForRelativeEntropy (32 ms) 43: [ RUN ] DensityFittingTest.GromppErrorWhenEnergyEvaluationFrequencyMismatch 43: 43: [WARNING] /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/src/gtest-death-test.cc:836:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test detected 2 threads. -43: [ OK ] DensityFittingTest.GromppErrorWhenEnergyEvaluationFrequencyMismatch (9 ms) +43: [ OK ] DensityFittingTest.GromppErrorWhenEnergyEvaluationFrequencyMismatch (8 ms) 43: [ RUN ] DensityFittingTest.CheckpointWorks 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_CheckpointWorks_input.mdp]: 43: Setting nstcalcenergy (100) equal to nstenergy (2) 43: -43: Setting the LD random seed to -819988561 +43: Setting the LD random seed to 1987039229 43: Generated 1 of the 1 non-bonded parameter combinations 43: Excluding 1 bonded neighbours molecule type 'Argon' 43: Number of degrees of freedom in T-Coupling group rest is 33.00 @@ -25597,10 +25650,13 @@ 43: 43: Writing final coordinates. 43: +43: NOTE: 22 % of the run time was spent in pair search, +43: you might want to increase nstlist (this has no effect on accuracy) +43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.005 0.002 193.1 +43: Time: 0.048 0.024 199.7 43: (ns/day) (hour/ns) -43: Performance: 108.025 0.222 +43: Performance: 10.733 2.236 43: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_CheckpointWorks.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 43: Overriding nsteps with value passed on the command line: 4 steps, 0.004 ps 43: Can not increase nstlist because an NVE ensemble is used @@ -25617,12 +25673,12 @@ 43: Writing final coordinates. 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.002 0.001 186.7 +43: Time: 0.061 0.030 199.8 43: (ns/day) (hour/ns) -43: Performance: 514.755 0.047 +43: Performance: 14.222 1.687 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_CheckpointWorks.edr as single precision energy file -43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Last energy frame read 1 time 0.002 [ OK ] DensityFittingTest.CheckpointWorks (13 ms) -43: [----------] 4 tests from DensityFittingTest (55 ms total) +43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Last energy frame read 1 time 0.002 [ OK ] DensityFittingTest.CheckpointWorks (71 ms) +43: [----------] 4 tests from DensityFittingTest (219 ms total) 43: 43: [----------] 4 tests from MimicTest 43: [ RUN ] MimicTest.OneQuantumMol @@ -25631,7 +25687,7 @@ 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to -1222922386 +43: Setting the LD random seed to 1073733119 43: Generated 10 of the 10 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 10 of the 10 1-4 parameter combinations @@ -25663,23 +25719,23 @@ 43: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 43: Reading frame 0 time 0.000 Last frame 0 time 0.000 43: -43: NOTE: 15 % of the run time was spent in pair search, +43: NOTE: 21 % of the run time was spent in pair search, 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.001 0.000 185.8 +43: Time: 0.016 0.008 199.2 43: (ns/day) (hour/ns) -43: Performance: 268.038 0.090 +43: Performance: 10.993 2.183 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_OneQuantumMol.edr as single precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.OneQuantumMol (8 ms) +43: [ OK ] MimicTest.OneQuantumMol (17 ms) 43: [ RUN ] MimicTest.AllQuantumMol 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol_input.mdp]: 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to -151126097 +43: Setting the LD random seed to -1210073881 43: Generated 10 of the 10 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 10 of the 10 1-4 parameter combinations @@ -25711,23 +25767,23 @@ 43: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 43: Reading frame 0 time 0.000 Last frame 0 time 0.000 43: -43: NOTE: 15 % of the run time was spent in pair search, +43: NOTE: 74 % of the run time was spent in pair search, 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.001 0.000 186.3 +43: Time: 0.015 0.008 199.2 43: (ns/day) (hour/ns) -43: Performance: 279.405 0.086 +43: Performance: 11.118 2.159 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol.edr as single precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.AllQuantumMol (7 ms) +43: [ OK ] MimicTest.AllQuantumMol (17 ms) 43: [ RUN ] MimicTest.TwoQuantumMol 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol_input.mdp]: 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to 200802134 +43: Setting the LD random seed to 1839067135 43: Generated 10 of the 10 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 10 of the 10 1-4 parameter combinations @@ -25759,23 +25815,23 @@ 43: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 43: Reading frame 0 time 0.000 Last frame 0 time 0.000 43: -43: NOTE: 15 % of the run time was spent in pair search, +43: NOTE: 46 % of the run time was spent in pair search, 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.001 0.000 185.9 +43: Time: 0.007 0.004 198.7 43: (ns/day) (hour/ns) -43: Performance: 308.678 0.078 +43: Performance: 23.312 1.030 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol.edr as single precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.TwoQuantumMol (7 ms) +43: [ OK ] MimicTest.TwoQuantumMol (15 ms) 43: [ RUN ] MimicTest.BondCuts 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts_input.mdp]: 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to -117969433 +43: Setting the LD random seed to 1371535287 43: Generated 2211 of the 2211 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 2211 of the 2211 1-4 parameter combinations @@ -25807,25 +25863,25 @@ 43: Reading frames from gro file 'Alanine dipeptide in water', 23 atoms. 43: Reading frame 0 time 0.000 Last frame 0 time 0.000 43: -43: NOTE: 17 % of the run time was spent in pair search, +43: NOTE: 38 % of the run time was spent in pair search, 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.001 0.000 190.6 +43: Time: 0.009 0.005 198.7 43: (ns/day) (hour/ns) -43: Performance: 183.395 0.131 +43: Performance: 18.883 1.271 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts.edr as single precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300.368 K 43: Calculated rlist for 1x1 atom pair-list as 1.034 nm, buffer size 0.034 nm 43: Set rlist, assuming 4x4 atom pair-list, to 1.025 nm, buffer size 0.025 nm 43: Note that mdrun will redetermine rlist based on the actual pair-list setup 43: This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.BondCuts (19 ms) -43: [----------] 4 tests from MimicTest (41 ms total) +43: [ OK ] MimicTest.BondCuts (33 ms) +43: [----------] 4 tests from MimicTest (82 ms total) 43: 43: [----------] 2 tests from WithIntegrator/ImdTest 43: [ RUN ] WithIntegrator/ImdTest.ImdCanRun/0 -43: Setting the LD random seed to -654320289 +43: Setting the LD random seed to -1412333825 43: Generated 20503 of the 20503 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 1 43: Generated 17396 of the 20503 1-4 parameter combinations @@ -25860,7 +25916,7 @@ 43: IMD: Pulling from IMD remote is enabled (-imdpull). 43: IMD: Setting port for connection requests to 0. 43: IMD: Setting up incoming socket. -43: IMD: Listening for IMD connection on port 48543. +43: IMD: Listening for IMD connection on port 50427. 43: IMD: -imdwait not set, starting simulation. 43: starting mdrun 'Glycine' 43: 2 steps, 0.0 ps. @@ -25873,17 +25929,17 @@ 43: Writing final coordinates. 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.001 0.001 189.6 +43: Time: 0.052 0.026 199.6 43: (ns/day) (hour/ns) -43: Performance: 728.662 0.033 -43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/0 (80 ms) +43: Performance: 20.029 1.198 +43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/0 (188 ms) 43: [ RUN ] WithIntegrator/ImdTest.ImdCanRun/1 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithIntegrator_ImdTest_ImdCanRun_1_input.mdp]: 43: Setting tcoupl from 'V-rescale' to 'no'. Temperature coupling does not 43: apply to steep. 43: -43: Setting the LD random seed to 2008022015 +43: Setting the LD random seed to -87182497 43: Generated 20503 of the 20503 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 1 43: Generated 17396 of the 20503 1-4 parameter combinations @@ -25909,7 +25965,7 @@ 43: IMD: Pulling from IMD remote is enabled (-imdpull). 43: IMD: Setting port for connection requests to 0. 43: IMD: Setting up incoming socket. -43: IMD: Listening for IMD connection on port 57749. +43: IMD: Listening for IMD connection on port 43323. 43: IMD: -imdwait not set, starting simulation. 43: 43: Steepest Descents: @@ -25926,13 +25982,13 @@ 43: Maximum force = 1.7794875e+04 on atom 9 43: Norm of force = 7.8732895e+03 43: This run will generate roughly 0 Mb of data -43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/1 (62 ms) -43: [----------] 2 tests from WithIntegrator/ImdTest (142 ms total) +43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/1 (175 ms) +43: [----------] 2 tests from WithIntegrator/ImdTest (363 ms total) 43: 43: [----------] Global test environment tear-down -43: [==========] 10 tests from 3 test cases ran. (239 ms total) +43: [==========] 10 tests from 3 test cases ran. (664 ms total) 43: [ PASSED ] 10 tests. -43/54 Test #43: MdrunModulesTests ................... Passed 0.26 sec +43/54 Test #43: MdrunModulesTests ................... Passed 0.70 sec test 44 Start 44: MdrunIOTests @@ -25947,7 +26003,7 @@ 44: For a correct single-point energy evaluation with nsteps = 0, use 44: continuation = yes to avoid constraining the input coordinates. 44: -44: Setting the LD random seed to 2140732263 +44: Setting the LD random seed to -10851716 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -25970,14 +26026,14 @@ 44: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm 44: Note that mdrun will redetermine rlist based on the actual pair-list setup 44: This run will generate roughly 0 Mb of data -44: [ OK ] GromppTest.EmptyMdpFileWorks (3 ms) +44: [ OK ] GromppTest.EmptyMdpFileWorks (11 ms) 44: [ RUN ] GromppTest.SimulatedAnnealingWorks 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/GromppTest_SimulatedAnnealingWorks_input.mdp]: 44: For a correct single-point energy evaluation with nsteps = 0, use 44: continuation = yes to avoid constraining the input coordinates. 44: -44: Setting the LD random seed to -1095625346 +44: Setting the LD random seed to -1480790535 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -26013,7 +26069,7 @@ 44: For a correct single-point energy evaluation with nsteps = 0, use 44: continuation = yes to avoid constraining the input coordinates. 44: -44: Setting the LD random seed to -1443905571 +44: Setting the LD random seed to -546361361 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -26048,12 +26104,12 @@ 44: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm 44: Note that mdrun will redetermine rlist based on the actual pair-list setup 44: This run will generate roughly 0 Mb of data -44: [ OK ] GromppTest.SimulatedAnnealingWorksWithMultipleGroups (3 ms) -44: [----------] 3 tests from GromppTest (8 ms total) +44: [ OK ] GromppTest.SimulatedAnnealingWorksWithMultipleGroups (11 ms) +44: [----------] 3 tests from GromppTest (24 ms total) 44: 44: [----------] 6 tests from MdrunTerminationTest 44: [ RUN ] MdrunTerminationTest.CheckpointRestartAppendsByDefault -44: Setting the LD random seed to -671121411 +44: Setting the LD random seed to -109585457 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -26087,9 +26143,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 195.1 +44: Time: 0.063 0.032 199.7 44: (ns/day) (hour/ns) -44: Performance: 178.165 0.135 +44: Performance: 8.175 2.936 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartAppendsByDefault.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartAppendsByDefault.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 4 @@ -26109,13 +26165,16 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 27 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.000 186.7 +44: Time: 0.236 0.118 199.9 44: (ns/day) (hour/ns) -44: Performance: 592.460 0.041 -44: [ OK ] MdrunTerminationTest.CheckpointRestartAppendsByDefault (16 ms) +44: Performance: 2.194 10.940 +44: [ OK ] MdrunTerminationTest.CheckpointRestartAppendsByDefault (246 ms) 44: [ RUN ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts -44: Setting the LD random seed to 1004404671 +44: Setting the LD random seed to -16924717 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -26141,20 +26200,20 @@ 44: starting mdrun 'spc2' 44: 100 steps, 0.1 ps. 44: -44: Step 13: Run time exceeded 0.000 hours, will terminate the run within 2 steps +44: Step 0: Run time exceeded 0.000 hours, will terminate the run within 2 steps 44: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 44: Calculated rlist for 1x1 atom pair-list as 1.026 nm, buffer size 0.026 nm 44: Set rlist, assuming 4x4 atom pair-list, to 1.024 nm, buffer size 0.024 nm 44: Note that mdrun will redetermine rlist based on the actual pair-list setup 44: This run will generate roughly 0 Mb of data 44: -44: NOTE: 17 % of the run time was spent in pair search, +44: NOTE: 29 % of the run time was spent in pair search, 44: you might want to increase nstlist (this has no effect on accuracy) 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 192.1 +44: Time: 0.048 0.024 199.7 44: (ns/day) (hour/ns) -44: Performance: 1630.419 0.015 +44: Performance: 7.262 3.305 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 102 @@ -26170,17 +26229,17 @@ 44: Using 2 OpenMP threads 44: 44: starting mdrun 'spc2' -44: 102 steps, 0.1 ps (continuing from step 14, 0.0 ps). +44: 102 steps, 0.1 ps (continuing from step 1, 0.0 ps). 44: 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 196.0 +44: Time: 0.261 0.130 199.9 44: (ns/day) (hour/ns) -44: Performance: 4560.594 0.005 -44: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (8 ms) +44: Performance: 67.558 0.355 +44: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (170 ms) 44: [ RUN ] MdrunTerminationTest.CheckpointRestartWithNoAppendWorksAndCannotLaterAppend -44: Setting the LD random seed to -118490305 +44: Setting the LD random seed to -313527349 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -26214,9 +26273,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.000 186.4 +44: Time: 0.009 0.005 198.4 44: (ns/day) (hour/ns) -44: Performance: 610.423 0.039 +44: Performance: 57.385 0.418 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 4 @@ -26236,10 +26295,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 15 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.000 191.6 +44: Time: 0.416 0.208 200.0 44: (ns/day) (hour/ns) -44: Performance: 641.394 0.037 +44: Performance: 1.246 19.266 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 6 @@ -26259,10 +26321,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 14 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.000 192.0 +44: Time: 0.448 0.224 200.0 44: (ns/day) (hour/ns) -44: Performance: 592.460 0.041 +44: Performance: 1.157 20.746 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 8 @@ -26282,10 +26347,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 23 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.000 191.7 +44: Time: 0.280 0.140 199.9 44: (ns/day) (hour/ns) -44: Performance: 626.607 0.038 +44: Performance: 1.848 12.989 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 10 to 80, rlist from 1.024 to 1.244 44: @@ -26298,16 +26366,16 @@ 44: starting mdrun 'spc2' 44: 8 steps, 0.0 ps (continuing from step 8, 0.0 ps). 44: -44: NOTE: 24 % of the run time was spent in pair search, +44: NOTE: 31 % of the run time was spent in pair search, 44: you might want to increase nstlist (this has no effect on accuracy) 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.000 0.000 172.7 +44: Time: 0.011 0.005 198.9 44: (ns/day) (hour/ns) -44: Performance: 784.389 0.031 -44: [ OK ] MdrunTerminationTest.CheckpointRestartWithNoAppendWorksAndCannotLaterAppend (12 ms) +44: Performance: 15.819 1.517 +44: [ OK ] MdrunTerminationTest.CheckpointRestartWithNoAppendWorksAndCannotLaterAppend (749 ms) 44: [ RUN ] MdrunTerminationTest.CheckpointRestartWorksEvenWithMissingCheckpointFile -44: Setting the LD random seed to -143368337 +44: Setting the LD random seed to -216065 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -26341,9 +26409,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.000 186.7 +44: Time: 0.053 0.027 199.7 44: (ns/day) (hour/ns) -44: Performance: 652.559 0.037 +44: Performance: 9.692 2.476 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithMissingCheckpointFile.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithMissingCheckpointFile.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 4 @@ -26364,12 +26432,12 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.000 186.8 +44: Time: 0.515 0.257 200.0 44: (ns/day) (hour/ns) -44: Performance: 998.314 0.024 -44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithMissingCheckpointFile (6 ms) +44: Performance: 1.678 14.301 +44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithMissingCheckpointFile (303 ms) 44: [ RUN ] MdrunTerminationTest.CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile -44: Setting the LD random seed to -289591297 +44: Setting the LD random seed to -22811673 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -26403,17 +26471,17 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.000 186.7 +44: Time: 0.064 0.032 199.7 44: (ns/day) (hour/ns) -44: Performance: 643.673 0.037 +44: Performance: 8.144 2.947 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 4 44: Writing statusfile with starting step 0 and length 4 steps... 44: time 0.000 and length 0.004 ps -44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile (4 ms) +44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile (36 ms) 44: [ RUN ] MdrunTerminationTest.RunWithNoAppendCreatesPartFiles -44: Setting the LD random seed to -1108871252 +44: Setting the LD random seed to 2096539098 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -26447,9 +26515,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.000 186.9 +44: Time: 0.040 0.020 199.4 44: (ns/day) (hour/ns) -44: Performance: 672.750 0.036 +44: Performance: 12.832 1.870 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_RunWithNoAppendCreatesPartFiles.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_RunWithNoAppendCreatesPartFiles.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 4 @@ -26470,11 +26538,11 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.000 191.2 +44: Time: 0.040 0.020 199.5 44: (ns/day) (hour/ns) -44: Performance: 692.461 0.035 -44: [ OK ] MdrunTerminationTest.RunWithNoAppendCreatesPartFiles (6 ms) -44: [----------] 6 tests from MdrunTerminationTest (53 ms total) +44: Performance: 13.056 1.838 +44: [ OK ] MdrunTerminationTest.RunWithNoAppendCreatesPartFiles (107 ms) +44: [----------] 6 tests from MdrunTerminationTest (1611 ms total) 44: 44: [----------] 12 tests from NormalIntegrators/MdrunNoAppendContinuationIsExact 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -26542,9 +26610,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 192.4 +44: Time: 0.079 0.040 199.7 44: (ns/day) (hour/ns) -44: Performance: 2178.428 0.011 +44: Performance: 36.982 0.649 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -26558,10 +26626,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 14 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.0 +44: Time: 0.448 0.224 199.9 44: (ns/day) (hour/ns) -44: Performance: 1452.133 0.017 +44: Performance: 3.471 6.914 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -26575,14 +26646,17 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 11 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.3 +44: Time: 1.200 0.600 200.0 44: (ns/day) (hour/ns) -44: Performance: 1413.124 0.017 +44: Performance: 1.296 18.520 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (9 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (968 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -26647,10 +26721,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 63 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 189.0 +44: Time: 0.064 0.032 199.7 44: (ns/day) (hour/ns) -44: Performance: 1798.188 0.013 +44: Performance: 45.620 0.526 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -26664,10 +26741,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 10 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 194.5 +44: Time: 1.256 0.628 200.0 44: (ns/day) (hour/ns) -44: Performance: 1289.637 0.019 +44: Performance: 1.238 19.385 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -26682,13 +26762,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 194.2 +44: Time: 1.360 0.680 200.0 44: (ns/day) (hour/ns) -44: Performance: 1284.557 0.019 +44: Performance: 1.143 20.990 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (9 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (1440 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -26745,9 +26825,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 192.5 +44: Time: 0.080 0.040 199.7 44: (ns/day) (hour/ns) -44: Performance: 2152.548 0.011 +44: Performance: 36.716 0.654 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.708 to 0.73 44: @@ -26763,9 +26843,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.4 +44: Time: 0.712 0.356 200.0 44: (ns/day) (hour/ns) -44: Performance: 1516.972 0.016 +44: Performance: 2.183 10.993 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.708 to 0.73 44: @@ -26781,13 +26861,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.0 +44: Time: 0.051 0.026 199.6 44: (ns/day) (hour/ns) -44: Performance: 1443.776 0.017 +44: Performance: 30.341 0.791 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (9 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (508 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -26844,9 +26924,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.9 +44: Time: 0.080 0.040 199.7 44: (ns/day) (hour/ns) -44: Performance: 2215.244 0.011 +44: Performance: 36.729 0.653 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -26862,9 +26942,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.2 +44: Time: 1.120 0.560 200.0 44: (ns/day) (hour/ns) -44: Performance: 1449.551 0.017 +44: Performance: 1.388 17.286 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -26880,13 +26960,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.0 +44: Time: 1.128 0.564 200.0 44: (ns/day) (hour/ns) -44: Performance: 1392.609 0.017 +44: Performance: 1.379 17.410 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (1292 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/4 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_input.mdp]: @@ -26968,9 +27048,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.3 +44: Time: 0.737 0.368 200.0 44: (ns/day) (hour/ns) -44: Performance: 2123.610 0.011 +44: Performance: 3.987 6.020 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -26985,9 +27065,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.3 +44: Time: 0.064 0.032 199.6 44: (ns/day) (hour/ns) -44: Performance: 1387.868 0.017 +44: Performance: 24.319 0.987 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -27001,14 +27081,17 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 38 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.4 +44: Time: 0.168 0.084 199.9 44: (ns/day) (hour/ns) -44: Performance: 1403.999 0.017 +44: Performance: 9.229 2.600 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (9 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (616 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/5 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_input.mdp]: @@ -27089,10 +27172,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 33 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 195.1 +44: Time: 0.120 0.060 199.9 44: (ns/day) (hour/ns) -44: Performance: 1704.175 0.014 +44: Performance: 24.391 0.984 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -27107,9 +27193,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 193.3 +44: Time: 0.108 0.054 199.9 44: (ns/day) (hour/ns) -44: Performance: 1221.532 0.020 +44: Performance: 14.328 1.675 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -27124,13 +27210,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 193.5 +44: Time: 0.086 0.043 199.9 44: (ns/day) (hour/ns) -44: Performance: 1192.065 0.020 +44: Performance: 18.170 1.321 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (208 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/6 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_input.mdp]: @@ -27203,9 +27289,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.2 +44: Time: 0.125 0.062 199.8 44: (ns/day) (hour/ns) -44: Performance: 2196.290 0.011 +44: Performance: 23.547 1.019 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.731 to 0.816 44: @@ -27221,9 +27307,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 189.3 +44: Time: 0.069 0.035 199.7 44: (ns/day) (hour/ns) -44: Performance: 1461.241 0.016 +44: Performance: 22.369 1.073 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.731 to 0.816 44: @@ -27239,13 +27325,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 189.9 +44: Time: 0.069 0.034 199.7 44: (ns/day) (hour/ns) -44: Performance: 1402.189 0.017 +44: Performance: 22.564 1.064 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (9 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (153 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/7 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_input.mdp]: @@ -27318,9 +27404,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.9 +44: Time: 0.152 0.076 199.9 44: (ns/day) (hour/ns) -44: Performance: 2018.543 0.012 +44: Performance: 19.335 1.241 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 40, rlist from 0.754 to 1.017 44: @@ -27336,9 +27422,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.2 +44: Time: 0.083 0.042 199.8 44: (ns/day) (hour/ns) -44: Performance: 1386.688 0.017 +44: Performance: 18.702 1.283 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 40, rlist from 0.754 to 1.017 44: @@ -27354,13 +27440,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.2 +44: Time: 0.084 0.042 199.8 44: (ns/day) (hour/ns) -44: Performance: 1286.077 0.019 +44: Performance: 18.459 1.300 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/7 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/7 (182 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/8 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_input.mdp]: @@ -27476,9 +27562,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.004 0.002 195.9 +44: Time: 0.404 0.202 199.9 44: (ns/day) (hour/ns) -44: Performance: 655.452 0.037 +44: Performance: 7.266 3.303 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -27493,9 +27579,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 193.4 +44: Time: 0.217 0.109 199.9 44: (ns/day) (hour/ns) -44: Performance: 572.091 0.042 +44: Performance: 7.164 3.350 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -27510,13 +27596,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 192.5 +44: Time: 0.216 0.108 199.9 44: (ns/day) (hour/ns) -44: Performance: 661.426 0.036 +44: Performance: 7.184 3.341 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/8 (27 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/8 (484 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/9 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_input.mdp]: @@ -27632,9 +27718,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.004 0.002 196.0 +44: Time: 0.477 0.238 200.0 44: (ns/day) (hour/ns) -44: Performance: 655.801 0.037 +44: Performance: 6.162 3.895 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -27649,9 +27735,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 193.4 +44: Time: 0.255 0.128 199.9 44: (ns/day) (hour/ns) -44: Performance: 589.995 0.041 +44: Performance: 6.099 3.935 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -27666,13 +27752,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 193.4 +44: Time: 0.250 0.125 199.9 44: (ns/day) (hour/ns) -44: Performance: 572.191 0.042 +44: Performance: 6.217 3.860 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (27 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (547 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/10 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_input.mdp]: @@ -27779,9 +27865,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.004 0.002 195.5 +44: Time: 0.401 0.201 199.9 44: (ns/day) (hour/ns) -44: Performance: 676.542 0.035 +44: Performance: 7.325 3.277 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.744 to 0.868 44: @@ -27797,9 +27883,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 193.2 +44: Time: 0.216 0.108 199.9 44: (ns/day) (hour/ns) -44: Performance: 608.714 0.039 +44: Performance: 7.200 3.334 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.744 to 0.868 44: @@ -27815,13 +27901,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 191.7 +44: Time: 0.215 0.108 199.9 44: (ns/day) (hour/ns) -44: Performance: 540.519 0.044 +44: Performance: 7.223 3.323 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/10 (39 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/10 (486 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/11 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_input.mdp]: @@ -27928,9 +28014,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.003 196.6 +44: Time: 0.642 0.321 200.0 44: (ns/day) (hour/ns) -44: Performance: 547.122 0.044 +44: Performance: 4.577 5.244 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 40, rlist from 0.726 to 0.869 44: @@ -27946,9 +28032,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 194.3 +44: Time: 0.343 0.171 199.9 44: (ns/day) (hour/ns) -44: Performance: 478.575 0.050 +44: Performance: 4.536 5.290 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 40, rlist from 0.726 to 0.869 44: @@ -27964,14 +28050,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 194.2 +44: Time: 0.343 0.171 199.9 44: (ns/day) (hour/ns) -44: Performance: 526.812 0.046 +44: Performance: 4.535 5.293 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/11 (36 ms) -44: [----------] 12 tests from NormalIntegrators/MdrunNoAppendContinuationIsExact (204 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/11 (742 ms) +44: [----------] 12 tests from NormalIntegrators/MdrunNoAppendContinuationIsExact (7626 ms total) 44: 44: [----------] 4 tests from NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -28061,9 +28147,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.004 0.002 194.8 +44: Time: 0.170 0.085 199.8 44: (ns/day) (hour/ns) -44: Performance: 730.274 0.033 +44: Performance: 17.221 1.394 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -28078,9 +28164,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 192.3 +44: Time: 0.093 0.046 199.7 44: (ns/day) (hour/ns) -44: Performance: 645.329 0.037 +44: Performance: 16.778 1.430 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -28095,13 +28181,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 192.5 +44: Time: 0.093 0.047 199.7 44: (ns/day) (hour/ns) -44: Performance: 620.173 0.039 +44: Performance: 16.623 1.444 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (25 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (219 ms) 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -28189,9 +28275,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.004 0.002 196.9 +44: Time: 0.218 0.109 199.9 44: (ns/day) (hour/ns) -44: Performance: 649.920 0.037 +44: Performance: 13.464 1.783 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -28206,9 +28292,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 195.6 +44: Time: 0.120 0.060 199.9 44: (ns/day) (hour/ns) -44: Performance: 567.117 0.042 +44: Performance: 12.942 1.854 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -28223,13 +28309,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 195.3 +44: Time: 0.115 0.058 199.9 44: (ns/day) (hour/ns) -44: Performance: 577.766 0.042 +44: Performance: 13.458 1.783 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (25 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (263 ms) 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -28308,9 +28394,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.004 0.002 194.8 +44: Time: 0.169 0.085 199.8 44: (ns/day) (hour/ns) -44: Performance: 731.923 0.033 +44: Performance: 17.381 1.381 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.728 to 0.805 44: @@ -28326,9 +28412,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 191.4 +44: Time: 0.093 0.047 199.7 44: (ns/day) (hour/ns) -44: Performance: 635.025 0.038 +44: Performance: 16.704 1.437 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.728 to 0.805 44: @@ -28344,13 +28430,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 192.0 +44: Time: 0.093 0.046 199.7 44: (ns/day) (hour/ns) -44: Performance: 623.016 0.039 +44: Performance: 16.784 1.430 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (38 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (230 ms) 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -28429,9 +28515,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.002 195.5 +44: Time: 0.218 0.109 199.9 44: (ns/day) (hour/ns) -44: Performance: 637.941 0.038 +44: Performance: 13.450 1.784 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 44: @@ -28447,9 +28533,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 192.4 +44: Time: 0.117 0.058 199.8 44: (ns/day) (hour/ns) -44: Performance: 581.475 0.041 +44: Performance: 13.300 1.805 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 44: @@ -28465,14 +28551,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 192.3 +44: Time: 0.116 0.058 199.8 44: (ns/day) (hour/ns) -44: Performance: 579.203 0.041 +44: Performance: 13.408 1.790 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (34 ms) -44: [----------] 4 tests from NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact (122 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (271 ms) +44: [----------] 4 tests from NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact (983 ms total) 44: 44: [----------] 6 tests from NVT/MdrunNoAppendContinuationIsExact 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -28541,9 +28627,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.5 +44: Time: 0.105 0.053 199.8 44: (ns/day) (hour/ns) -44: Performance: 2305.611 0.010 +44: Performance: 27.872 0.861 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -28559,9 +28645,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 189.9 +44: Time: 0.058 0.029 199.7 44: (ns/day) (hour/ns) -44: Performance: 1524.774 0.016 +44: Performance: 26.634 0.901 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -28577,13 +28663,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.4 +44: Time: 0.059 0.029 199.7 44: (ns/day) (hour/ns) -44: Performance: 1437.413 0.017 +44: Performance: 26.360 0.910 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (9 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (127 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -28640,9 +28726,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.7 +44: Time: 0.106 0.053 199.8 44: (ns/day) (hour/ns) -44: Performance: 2261.598 0.011 +44: Performance: 27.790 0.864 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -28658,9 +28744,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 189.6 +44: Time: 0.059 0.030 199.7 44: (ns/day) (hour/ns) -44: Performance: 1502.991 0.016 +44: Performance: 26.333 0.911 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -28676,13 +28762,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.7 +44: Time: 0.058 0.029 199.7 44: (ns/day) (hour/ns) -44: Performance: 1384.922 0.017 +44: Performance: 26.598 0.902 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (9 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (127 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -28747,9 +28833,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.7 +44: Time: 0.106 0.053 199.8 44: (ns/day) (hour/ns) -44: Performance: 2233.718 0.011 +44: Performance: 27.742 0.865 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -28765,9 +28851,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 189.3 +44: Time: 0.060 0.030 199.7 44: (ns/day) (hour/ns) -44: Performance: 1468.479 0.016 +44: Performance: 26.010 0.923 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -28783,13 +28869,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.6 +44: Time: 0.059 0.030 199.7 44: (ns/day) (hour/ns) -44: Performance: 1442.499 0.017 +44: Performance: 26.278 0.913 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (129 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -28856,9 +28942,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.7 +44: Time: 0.134 0.067 199.8 44: (ns/day) (hour/ns) -44: Performance: 2073.576 0.012 +44: Performance: 21.926 1.095 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -28874,9 +28960,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.0 +44: Time: 0.074 0.037 199.7 44: (ns/day) (hour/ns) -44: Performance: 1410.679 0.017 +44: Performance: 21.129 1.136 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -28892,13 +28978,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.6 +44: Time: 0.070 0.035 199.7 44: (ns/day) (hour/ns) -44: Performance: 1350.514 0.018 +44: Performance: 22.095 1.086 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (9 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (158 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_input.mdp]: @@ -28955,9 +29041,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 194.9 +44: Time: 0.123 0.062 199.9 44: (ns/day) (hour/ns) -44: Performance: 1949.555 0.012 +44: Performance: 23.803 1.008 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -28973,9 +29059,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 194.0 +44: Time: 0.068 0.034 199.8 44: (ns/day) (hour/ns) -44: Performance: 1305.641 0.018 +44: Performance: 22.695 1.057 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -28991,13 +29077,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 194.5 +44: Time: 0.067 0.034 199.8 44: (ns/day) (hour/ns) -44: Performance: 910.014 0.026 +44: Performance: 23.040 1.042 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (147 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_input.mdp]: @@ -29054,9 +29140,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 192.9 +44: Time: 0.133 0.066 199.8 44: (ns/day) (hour/ns) -44: Performance: 1893.237 0.013 +44: Performance: 22.105 1.086 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -29072,9 +29158,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.8 +44: Time: 0.072 0.036 199.7 44: (ns/day) (hour/ns) -44: Performance: 1260.723 0.019 +44: Performance: 21.449 1.119 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -29090,14 +29176,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.8 +44: Time: 0.070 0.035 199.7 44: (ns/day) (hour/ns) -44: Performance: 1260.236 0.019 +44: Performance: 22.107 1.086 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (9 ms) -44: [----------] 6 tests from NVT/MdrunNoAppendContinuationIsExact (56 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (157 ms) +44: [----------] 6 tests from NVT/MdrunNoAppendContinuationIsExact (845 ms total) 44: 44: [----------] 4 tests from NPH/MdrunNoAppendContinuationIsExact 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -29165,9 +29251,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 190.9 +44: Time: 0.117 0.058 199.8 44: (ns/day) (hour/ns) -44: Performance: 1049.326 0.023 +44: Performance: 25.189 0.953 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -29181,10 +29267,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 10 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 188.0 +44: Time: 0.065 0.033 199.7 44: (ns/day) (hour/ns) -44: Performance: 721.888 0.033 +44: Performance: 23.774 1.010 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -29198,14 +29287,17 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 10 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 189.2 +44: Time: 0.065 0.032 199.6 44: (ns/day) (hour/ns) -44: Performance: 653.605 0.037 +44: Performance: 24.017 0.999 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (19 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (143 ms) 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -29271,9 +29363,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 190.6 +44: Time: 0.112 0.056 199.8 44: (ns/day) (hour/ns) -44: Performance: 1015.594 0.024 +44: Performance: 26.190 0.916 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -29287,10 +29379,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 11 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 188.9 +44: Time: 0.062 0.031 199.7 44: (ns/day) (hour/ns) -44: Performance: 642.912 0.037 +44: Performance: 25.024 0.959 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -29304,14 +29399,17 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 10 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 188.5 +44: Time: 0.063 0.032 199.7 44: (ns/day) (hour/ns) -44: Performance: 677.360 0.035 +44: Performance: 24.662 0.973 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (22 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (138 ms) 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -29377,9 +29475,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 191.2 +44: Time: 0.144 0.072 199.9 44: (ns/day) (hour/ns) -44: Performance: 1217.990 0.020 +44: Performance: 20.358 1.179 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -29394,9 +29492,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 189.3 +44: Time: 0.079 0.040 199.7 44: (ns/day) (hour/ns) -44: Performance: 786.849 0.031 +44: Performance: 19.620 1.223 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -29411,13 +29509,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 191.7 +44: Time: 0.076 0.038 199.7 44: (ns/day) (hour/ns) -44: Performance: 625.646 0.038 +44: Performance: 20.509 1.170 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (21 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (169 ms) 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -29483,9 +29581,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 195.3 +44: Time: 0.129 0.065 199.9 44: (ns/day) (hour/ns) -44: Performance: 1321.165 0.018 +44: Performance: 22.703 1.057 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -29500,9 +29598,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 194.7 +44: Time: 0.072 0.036 199.8 44: (ns/day) (hour/ns) -44: Performance: 796.068 0.030 +44: Performance: 21.682 1.107 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -29517,14 +29615,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 195.1 +44: Time: 0.070 0.035 199.8 44: (ns/day) (hour/ns) -44: Performance: 667.928 0.036 +44: Performance: 22.197 1.081 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (16 ms) -44: [----------] 4 tests from NPH/MdrunNoAppendContinuationIsExact (78 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (153 ms) +44: [----------] 4 tests from NPH/MdrunNoAppendContinuationIsExact (603 ms total) 44: 44: [----------] 12 tests from NPT/MdrunNoAppendContinuationIsExact 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -29593,9 +29691,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 191.0 +44: Time: 0.110 0.055 199.7 44: (ns/day) (hour/ns) -44: Performance: 1528.304 0.016 +44: Performance: 26.617 0.902 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -29611,9 +29709,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 190.6 +44: Time: 0.061 0.031 199.7 44: (ns/day) (hour/ns) -44: Performance: 858.965 0.028 +44: Performance: 25.349 0.947 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -29629,13 +29727,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 188.9 +44: Time: 0.062 0.031 199.7 44: (ns/day) (hour/ns) -44: Performance: 1160.260 0.021 +44: Performance: 24.984 0.961 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (14 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (137 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -29702,9 +29800,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 191.0 +44: Time: 0.106 0.053 199.8 44: (ns/day) (hour/ns) -44: Performance: 1771.304 0.014 +44: Performance: 27.700 0.866 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -29720,9 +29818,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 189.4 +44: Time: 0.059 0.029 199.7 44: (ns/day) (hour/ns) -44: Performance: 1161.086 0.021 +44: Performance: 26.361 0.910 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -29738,13 +29836,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 189.3 +44: Time: 0.060 0.030 199.7 44: (ns/day) (hour/ns) -44: Performance: 1286.584 0.019 +44: Performance: 26.019 0.922 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (12 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (132 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -29801,9 +29899,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.4 +44: Time: 0.110 0.055 199.8 44: (ns/day) (hour/ns) -44: Performance: 1925.787 0.012 +44: Performance: 26.636 0.901 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -29819,9 +29917,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 189.5 +44: Time: 0.061 0.031 199.7 44: (ns/day) (hour/ns) -44: Performance: 1216.974 0.020 +44: Performance: 25.351 0.947 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -29837,13 +29935,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 189.6 +44: Time: 0.062 0.031 199.7 44: (ns/day) (hour/ns) -44: Performance: 1335.035 0.018 +44: Performance: 24.997 0.960 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (12 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (136 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -29900,9 +29998,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 190.0 +44: Time: 0.106 0.053 199.8 44: (ns/day) (hour/ns) -44: Performance: 1105.039 0.022 +44: Performance: 27.630 0.869 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -29918,9 +30016,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 188.1 +44: Time: 0.059 0.030 199.6 44: (ns/day) (hour/ns) -44: Performance: 708.250 0.034 +44: Performance: 26.296 0.913 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -29936,13 +30034,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 188.4 +44: Time: 0.060 0.030 199.7 44: (ns/day) (hour/ns) -44: Performance: 669.848 0.036 +44: Performance: 25.965 0.924 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (19 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (131 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_input.mdp]: @@ -30021,9 +30119,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 186.9 +44: Time: 0.111 0.055 199.8 44: (ns/day) (hour/ns) -44: Performance: 1110.617 0.022 +44: Performance: 26.511 0.905 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -30039,9 +30137,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 187.4 +44: Time: 0.061 0.031 199.7 44: (ns/day) (hour/ns) -44: Performance: 743.275 0.032 +44: Performance: 25.327 0.948 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -30057,13 +30155,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 188.3 +44: Time: 0.061 0.031 199.7 44: (ns/day) (hour/ns) -44: Performance: 683.321 0.035 +44: Performance: 25.479 0.942 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (21 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (137 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_input.mdp]: @@ -30128,9 +30226,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 192.6 +44: Time: 0.105 0.053 199.8 44: (ns/day) (hour/ns) -44: Performance: 937.971 0.026 +44: Performance: 27.921 0.860 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -30146,9 +30244,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 187.9 +44: Time: 0.059 0.030 199.7 44: (ns/day) (hour/ns) -44: Performance: 904.462 0.027 +44: Performance: 26.165 0.917 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -30164,13 +30262,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 188.6 +44: Time: 0.058 0.029 199.7 44: (ns/day) (hour/ns) -44: Performance: 910.268 0.026 +44: Performance: 26.959 0.890 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (20 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (126 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/6 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_input.mdp]: @@ -30236,13 +30334,10 @@ 44: 44: Writing final coordinates. 44: -44: NOTE: 21 % of the run time was spent in pair search, -44: you might want to increase nstlist (this has no effect on accuracy) -44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 192.3 +44: Time: 0.138 0.069 199.8 44: (ns/day) (hour/ns) -44: Performance: 1205.832 0.020 +44: Performance: 21.304 1.127 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -30258,9 +30353,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 189.0 +44: Time: 0.076 0.038 199.7 44: (ns/day) (hour/ns) -44: Performance: 1038.361 0.023 +44: Performance: 20.451 1.174 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -30276,13 +30371,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 189.1 +44: Time: 0.073 0.036 199.7 44: (ns/day) (hour/ns) -44: Performance: 1018.579 0.024 +44: Performance: 21.373 1.123 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (15 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (159 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/7 44: [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/7 (0 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/8 @@ -30341,9 +30436,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 191.2 +44: Time: 0.138 0.069 199.8 44: (ns/day) (hour/ns) -44: Performance: 1689.686 0.014 +44: Performance: 21.291 1.127 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_8_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -30359,9 +30454,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 189.4 +44: Time: 0.076 0.038 199.7 44: (ns/day) (hour/ns) -44: Performance: 1088.979 0.022 +44: Performance: 20.468 1.173 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_8_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -30377,13 +30472,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 189.0 +44: Time: 0.073 0.036 199.7 44: (ns/day) (hour/ns) -44: Performance: 1136.804 0.021 +44: Performance: 21.358 1.124 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_8_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_8_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_8_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/8 (14 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/8 (162 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/9 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_input.mdp]: @@ -30440,9 +30535,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 195.2 +44: Time: 0.123 0.062 199.9 44: (ns/day) (hour/ns) -44: Performance: 1518.135 0.016 +44: Performance: 23.878 1.005 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -30458,9 +30553,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 193.7 +44: Time: 0.068 0.034 199.8 44: (ns/day) (hour/ns) -44: Performance: 1078.535 0.022 +44: Performance: 22.733 1.056 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -30476,18 +30571,18 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 194.0 +44: Time: 0.068 0.034 199.8 44: (ns/day) (hour/ns) -44: Performance: 950.318 0.025 +44: Performance: 22.987 1.044 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (12 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (146 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/10 -44: [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/10 (1 ms) +44: [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/10 (0 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/11 44: [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/11 (0 ms) -44: [----------] 12 tests from NPT/MdrunNoAppendContinuationIsExact (140 ms total) +44: [----------] 12 tests from NPT/MdrunNoAppendContinuationIsExact (1266 ms total) 44: 44: [----------] 1 test from MTTK/MdrunNoAppendContinuationIsExact 44: [ RUN ] MTTK/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -30546,9 +30641,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 193.8 +44: Time: 0.134 0.067 199.8 44: (ns/day) (hour/ns) -44: Performance: 1275.485 0.019 +44: Performance: 21.887 1.097 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MTTK_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -30564,9 +30659,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.7 +44: Time: 0.074 0.037 199.7 44: (ns/day) (hour/ns) -44: Performance: 1134.432 0.021 +44: Performance: 21.117 1.137 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MTTK_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -30582,18 +30677,18 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 192.2 +44: Time: 0.070 0.035 199.7 44: (ns/day) (hour/ns) -44: Performance: 869.036 0.028 +44: Performance: 22.069 1.088 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MTTK_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MTTK_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MTTK_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] MTTK/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (11 ms) -44: [----------] 1 test from MTTK/MdrunNoAppendContinuationIsExact (11 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] MTTK/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (159 ms) +44: [----------] 1 test from MTTK/MdrunNoAppendContinuationIsExact (159 ms total) 44: 44: [----------] 3 tests from Checking/InitialConstraintsTest 44: [ RUN ] Checking/InitialConstraintsTest.Works/0 -44: Setting the LD random seed to -271630337 +44: Setting the LD random seed to 2143280894 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -30631,14 +30726,17 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 13 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 188.6 +44: Time: 0.026 0.013 199.2 44: (ns/day) (hour/ns) -44: Performance: 258.479 0.093 +44: Performance: 13.384 1.793 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_spc-and-methanol.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (5 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (24 ms) 44: [ RUN ] Checking/InitialConstraintsTest.Works/1 -44: Setting the LD random seed to -1611989969 +44: Setting the LD random seed to -479873026 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -30677,18 +30775,18 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 192.3 +44: Time: 0.037 0.018 199.6 44: (ns/day) (hour/ns) -44: Performance: 217.064 0.111 +44: Performance: 9.432 2.544 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_spc-and-methanol.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (4 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (26 ms) 44: [ RUN ] Checking/InitialConstraintsTest.Works/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]: 44: Integrator method md-vv-avek is implemented primarily for validation 44: purposes; for molecular dynamics, you should probably be using md or md-vv 44: -44: Setting the LD random seed to 2113859556 +44: Setting the LD random seed to 1476226037 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -30727,17 +30825,17 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.000 185.4 +44: Time: 0.038 0.019 199.4 44: (ns/day) (hour/ns) -44: Performance: 392.407 0.061 +44: Performance: 9.177 2.615 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_spc-and-methanol.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (5 ms) -44: [----------] 3 tests from Checking/InitialConstraintsTest (14 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (32 ms) +44: [----------] 3 tests from Checking/InitialConstraintsTest (82 ms total) 44: 44: [----------] Global test environment tear-down -44: [==========] 51 tests from 9 test cases ran. (686 ms total) +44: [==========] 51 tests from 9 test cases ran. (13200 ms total) 44: [ PASSED ] 51 tests. -44/54 Test #44: MdrunIOTests ........................ Passed 0.70 sec +44/54 Test #44: MdrunIOTests ........................ Passed 13.23 sec test 45 Start 45: MdrunTests @@ -30752,7 +30850,7 @@ 45: The Berendsen thermostat does not generate the correct kinetic energy 45: distribution. You might want to consider using the V-rescale thermostat. 45: -45: Setting the LD random seed to 1304356215 +45: Setting the LD random seed to 2073475455 45: Generated 2145 of the 2145 non-bonded parameter combinations 45: Generating 1-4 interactions: fudge = 0.5 45: Generated 2145 of the 2145 1-4 parameter combinations @@ -30798,11 +30896,11 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.025 0.013 198.8 +45: Time: 1.216 0.608 200.0 45: (ns/day) (hour/ns) -45: Performance: 2778.560 0.009 -45: [ OK ] DispersionCorrectionTest.DispersionCorrectionCanRun (60 ms) -45: [----------] 1 test from DispersionCorrectionTest (60 ms total) +45: Performance: 57.126 0.420 +45: [ OK ] DispersionCorrectionTest.DispersionCorrectionCanRun (693 ms) +45: [----------] 1 test from DispersionCorrectionTest (693 ms total) 45: 45: [----------] 1 test from OriresTest 45: [ RUN ] OriresTest.OriresCanRun @@ -30811,7 +30909,7 @@ 45: The Berendsen thermostat does not generate the correct kinetic energy 45: distribution. You might want to consider using the V-rescale thermostat. 45: -45: Setting the LD random seed to -1084271962 +45: Setting the LD random seed to -37724801 45: Generated 2145 of the 2145 non-bonded parameter combinations 45: Generating 1-4 interactions: fudge = 0.5 45: Generated 2145 of the 2145 1-4 parameter combinations @@ -30850,15 +30948,15 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.007 0.004 197.1 +45: Time: 0.960 0.480 200.0 45: (ns/day) (hour/ns) -45: Performance: 540.547 0.044 -45: [ OK ] OriresTest.OriresCanRun (132 ms) -45: [----------] 1 test from OriresTest (132 ms total) +45: Performance: 3.959 6.062 +45: [ OK ] OriresTest.OriresCanRun (831 ms) +45: [----------] 1 test from OriresTest (831 ms total) 45: 45: [----------] 3 tests from PmeTest 45: [ RUN ] PmeTest.ReproducesEnergies -45: Setting the LD random seed to 2046799550 +45: Setting the LD random seed to -58911748 45: Generated 8 of the 10 non-bonded parameter combinations 45: Excluding 2 bonded neighbours molecule type 'Methanol' 45: Excluding 2 bonded neighbours molecule type 'SOL' @@ -30898,10 +30996,13 @@ 45: 45: Writing final coordinates. 45: +45: NOTE: 30 % of the run time was spent in pair search, +45: you might want to increase nstlist (this has no effect on accuracy) +45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.029 0.014 199.5 +45: Time: 0.216 0.108 199.9 45: (ns/day) (hour/ns) -45: Performance: 125.605 0.191 +45: Performance: 16.784 1.430 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as single precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 45: Can not increase nstlist because an NVE ensemble is used @@ -30917,9 +31018,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.028 0.014 199.5 +45: Time: 2.656 1.328 200.0 45: (ns/day) (hour/ns) -45: Performance: 128.009 0.187 +45: Performance: 1.366 17.567 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as single precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 45: Can not increase nstlist because an NVE ensemble is used @@ -30935,18 +31036,18 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.029 0.014 199.5 +45: Time: 2.504 1.252 200.0 45: (ns/day) (hour/ns) -45: Performance: 126.268 0.190 +45: Performance: 1.449 16.562 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as single precision energy file -45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (9624 ms) +45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (19385 ms) 45: [ RUN ] PmeTest.ScalesTheBox 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -1545601313 +45: Setting the LD random seed to -755255621 45: Generated 8 of the 10 non-bonded parameter combinations 45: Excluding 2 bonded neighbours molecule type 'Methanol' 45: Excluding 2 bonded neighbours molecule type 'SOL' @@ -30978,9 +31079,9 @@ 45: 0 steps, 0.0 ps. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 191.1 +45: Time: 0.001 0.000 183.1 45: (ns/day) (hour/ns) -45: Performance: 106.148 0.226 +45: Performance: 189.533 0.127 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_spc-and-methanol_PmeOnCpu.edr as single precision energy file 45: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K 45: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -30989,14 +31090,14 @@ 45: Calculating fourier grid dimensions for X Y Z 45: Using a fourier grid of 28x28x28, spacing 0.108 0.108 0.108 45: This run will generate roughly 0 Mb of data -45: [ OK ] PmeTest.ScalesTheBox (7 ms) +45: [ OK ] PmeTest.ScalesTheBox (96 ms) 45: [ RUN ] PmeTest.ScalesTheBoxWithWalls 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -274792513 +45: Setting the LD random seed to 2069813239 45: Generated 8 of the 10 non-bonded parameter combinations 45: Excluding 2 bonded neighbours molecule type 'Methanol' 45: Excluding 2 bonded neighbours molecule type 'SOL' @@ -31029,9 +31130,9 @@ 45: 0 steps, 0.0 ps. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.006 0.003 196.1 +45: Time: 0.046 0.023 199.5 45: (ns/day) (hour/ns) -45: Performance: 30.499 0.787 +45: Performance: 3.788 6.336 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_spc-and-methanol_PmeOnCpu.edr as single precision energy file 45: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 966.268 K 45: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -31040,8 +31141,8 @@ 45: Calculating fourier grid dimensions for X Y Z 45: Using a fourier grid of 28x28x128, spacing 0.108 0.108 0.118 45: This run will generate roughly 0 Mb of data -45: [ OK ] PmeTest.ScalesTheBoxWithWalls (29982 ms) -45: [----------] 3 tests from PmeTest (39613 ms total) +45: [ OK ] PmeTest.ScalesTheBoxWithWalls (71722 ms) +45: [----------] 3 tests from PmeTest (91203 ms total) 45: 45: [----------] 1 test from CompelTest 45: [ RUN ] CompelTest.SwapCanRun @@ -31050,7 +31151,7 @@ 45: The Berendsen thermostat does not generate the correct kinetic energy 45: distribution. You might want to consider using the V-rescale thermostat. 45: -45: Setting the LD random seed to 1073573884 +45: Setting the LD random seed to -1348485261 45: Generated 330891 of the 330891 non-bonded parameter combinations 45: Generating 1-4 interactions: fudge = 0.5 45: Generated 330891 of the 330891 1-4 parameter combinations @@ -31109,13 +31210,13 @@ 45: 45: Writing final coordinates. 45: -45: NOTE: 39 % of the run time was spent in pair search, +45: NOTE: 28 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.300 0.150 199.9 +45: Time: 0.627 0.314 200.0 45: (ns/day) (hour/ns) -45: Performance: 8.647 2.775 +45: Performance: 4.132 5.808 45: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/CompelTest_SwapCanRun.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 45: Overriding nsteps with value passed on the command line: 2 steps, 0.01 ps 45: @@ -31136,15 +31237,15 @@ 45: 45: Writing final coordinates. 45: -45: NOTE: 30 % of the run time was spent in pair search, +45: NOTE: 11 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.207 0.104 199.9 +45: Time: 0.665 0.332 200.0 45: (ns/day) (hour/ns) -45: Performance: 12.494 1.921 -45: [ OK ] CompelTest.SwapCanRun (543 ms) -45: [----------] 1 test from CompelTest (543 ms total) +45: Performance: 3.899 6.155 +45: [ OK ] CompelTest.SwapCanRun (1534 ms) +45: [----------] 1 test from CompelTest (1534 ms total) 45: 45: [----------] 6 tests from BondedInteractionsTest 45: [ RUN ] BondedInteractionsTest.NormalBondWorks @@ -31153,7 +31254,7 @@ 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -809610322 +45: Setting the LD random seed to 1073736957 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -31186,22 +31287,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 17 % of the run time was spent in pair search, +45: NOTE: 31 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 169.5 +45: Time: 0.021 0.011 199.4 45: (ns/day) (hour/ns) -45: Performance: 452.419 0.053 +45: Performance: 8.122 2.955 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.NormalBondWorks (4 ms) +45: [ OK ] BondedInteractionsTest.NormalBondWorks (19 ms) 45: [ RUN ] BondedInteractionsTest.TabulatedBondWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -1346371585 +45: Setting the LD random seed to -543166753 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -31234,22 +31335,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 17 % of the run time was spent in pair search, +45: NOTE: 16 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 183.1 +45: Time: 0.021 0.011 199.5 45: (ns/day) (hour/ns) -45: Performance: 526.727 0.046 +45: Performance: 8.157 2.942 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.TabulatedBondWorks (3 ms) +45: [ OK ] BondedInteractionsTest.TabulatedBondWorks (16 ms) 45: [ RUN ] BondedInteractionsTest.NormalAngleWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -94699537 +45: Setting the LD random seed to 2141976567 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -31282,22 +31383,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 16 % of the run time was spent in pair search, +45: NOTE: 15 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 185.2 +45: Time: 0.022 0.011 199.5 45: (ns/day) (hour/ns) -45: Performance: 527.493 0.045 +45: Performance: 7.781 3.084 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.NormalAngleWorks (4 ms) +45: [ OK ] BondedInteractionsTest.NormalAngleWorks (16 ms) 45: [ RUN ] BondedInteractionsTest.TabulatedAngleWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to 805170684 +45: Setting the LD random seed to -1767907649 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -31330,22 +31431,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 17 % of the run time was spent in pair search, +45: NOTE: 72 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 184.8 +45: Time: 0.019 0.010 199.5 45: (ns/day) (hour/ns) -45: Performance: 575.219 0.042 +45: Performance: 8.871 2.705 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (3 ms) +45: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (16 ms) 45: [ RUN ] BondedInteractionsTest.NormalDihedralWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -620959886 +45: Setting the LD random seed to -540344903 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -31378,22 +31479,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 16 % of the run time was spent in pair search, +45: NOTE: 37 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 185.5 +45: Time: 0.009 0.004 199.1 45: (ns/day) (hour/ns) -45: Performance: 549.073 0.044 +45: Performance: 19.468 1.233 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.NormalDihedralWorks (3 ms) +45: [ OK ] BondedInteractionsTest.NormalDihedralWorks (14 ms) 45: [ RUN ] BondedInteractionsTest.TabulatedDihedralWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -21063745 +45: Setting the LD random seed to -537930667 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -31426,24 +31527,24 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 16 % of the run time was spent in pair search, +45: NOTE: 37 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 185.2 +45: Time: 0.009 0.005 199.1 45: (ns/day) (hour/ns) -45: Performance: 537.667 0.045 +45: Performance: 19.171 1.252 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (4 ms) -45: [----------] 6 tests from BondedInteractionsTest (21 ms total) +45: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (16 ms) +45: [----------] 6 tests from BondedInteractionsTest (97 ms total) 45: 45: [----------] Global test environment tear-down -45: [==========] 12 tests from 5 test cases ran. (40369 ms total) +45: [==========] 12 tests from 5 test cases ran. (94358 ms total) 45: [ PASSED ] 12 tests. 45: 45: YOU HAVE 12 DISABLED TESTS 45: -45/54 Test #45: MdrunTests .......................... Passed 40.39 sec +45/54 Test #45: MdrunTests .......................... Passed 94.37 sec test 46 Start 46: MdrunNonIntegratorTests @@ -31463,9 +31564,9 @@ 46: 46: Coulomb LJ comb. SIMD Mcycles Mcycles/it. pairs/cycle 46: total useful -46: Ewald all geom. 4xM 0.121 0.1213 9.8106 5.1902 -46: [ OK ] NonbondedBenchTest.BasicEndToEndTest (16 ms) -46: [----------] 1 test from NonbondedBenchTest (16 ms total) +46: Ewald all geom. 4xM 0.108 0.1080 11.0259 5.8332 +46: [ OK ] NonbondedBenchTest.BasicEndToEndTest (22 ms) +46: [----------] 1 test from NonbondedBenchTest (31 ms total) 46: 46: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 @@ -31516,7 +31617,7 @@ 46: Norm of force = 8.7721851e+01 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (201 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (493 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -31568,7 +31669,7 @@ 46: Norm of force = 1.8452602e+02 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (185 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (417 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -31618,7 +31719,7 @@ 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 turning H bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (61 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (171 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -31675,7 +31776,7 @@ 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning H bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (60 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (180 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -31735,7 +31836,7 @@ 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 3.000 Last energy frame read 2 time 3.000 turning all bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (9 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (125 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -31802,8 +31903,8 @@ 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning all bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (9 ms) -46: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (526 ms total) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (169 ms) +46: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (1555 ms total) 46: 46: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 @@ -31843,7 +31944,7 @@ 46: Norm of force = 1.6383933e+00 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (3 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (18 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -31884,7 +31985,7 @@ 46: Norm of force = 1.0525324e+00 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (3 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (15 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -31935,7 +32036,7 @@ 46: Norm of force = 1.0525324e+00 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (3 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (23 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -31984,7 +32085,7 @@ 46: Norm of force = 4.6227534e+03 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (60 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (159 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -32036,7 +32137,7 @@ 46: Norm of force = 3.6139019e+03 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (61 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (165 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -32098,8 +32199,8 @@ 46: Norm of force = 6.0643518e+03 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (60 ms) -46: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (190 ms total) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (150 ms) +46: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (530 ms total) 46: 46: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 @@ -32142,9 +32243,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.7 +46: Time: 0.112 0.056 199.8 46: (ns/day) (hour/ns) -46: Performance: 2171.517 0.011 +46: Performance: 26.173 0.917 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -32158,18 +32259,18 @@ 46: trr version: GMX_trn_file (single precision) 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 22 % of the run time was spent in pair search, +46: NOTE: 48 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 192.3 +46: Time: 0.034 0.017 199.7 46: (ns/day) (hour/ns) -46: Performance: 4952.246 0.005 +46: Performance: 86.900 0.276 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 (6 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 (84 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_input.mdp]: @@ -32210,9 +32311,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 195.6 +46: Time: 0.128 0.064 199.9 46: (ns/day) (hour/ns) -46: Performance: 1991.142 0.012 +46: Performance: 22.960 1.045 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -32225,18 +32326,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 26 % of the run time was spent in pair search, +46: NOTE: 49 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 192.3 +46: Time: 0.034 0.017 199.7 46: (ns/day) (hour/ns) -46: Performance: 4757.215 0.005 +46: Performance: 87.556 0.274 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 (5 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 (89 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_input.mdp]: @@ -32273,9 +32374,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.3 +46: Time: 0.105 0.053 198.9 46: (ns/day) (hour/ns) -46: Performance: 2247.572 0.011 +46: Performance: 27.767 0.864 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Changing nstlist from 8 to 100, rlist from 0.708 to 0.73 46: @@ -32289,18 +32390,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 23 % of the run time was spent in pair search, +46: NOTE: 50 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 191.9 +46: Time: 0.033 0.017 199.7 46: (ns/day) (hour/ns) -46: Performance: 4805.455 0.005 +46: Performance: 87.584 0.274 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 (6 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 (78 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_input.mdp]: @@ -32337,9 +32438,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.6 +46: Time: 0.105 0.053 199.9 46: (ns/day) (hour/ns) -46: Performance: 2284.239 0.011 +46: Performance: 27.913 0.860 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 46: @@ -32353,18 +32454,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 22 % of the run time was spent in pair search, +46: NOTE: 49 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 191.9 +46: Time: 0.033 0.017 199.7 46: (ns/day) (hour/ns) -46: Performance: 4877.746 0.005 +46: Performance: 88.656 0.271 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 (5 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 (78 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_input.mdp]: @@ -32413,9 +32514,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 191.9 +46: Time: 0.124 0.062 199.8 46: (ns/day) (hour/ns) -46: Performance: 2003.445 0.012 +46: Performance: 23.610 1.017 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -32428,18 +32529,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 24 % of the run time was spent in pair search, +46: NOTE: 41 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 191.6 +46: Time: 0.030 0.015 199.7 46: (ns/day) (hour/ns) -46: Performance: 4409.874 0.005 +46: Performance: 98.940 0.243 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 (188 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 (271 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_input.mdp]: @@ -32488,9 +32589,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 195.5 +46: Time: 0.156 0.078 199.9 46: (ns/day) (hour/ns) -46: Performance: 1569.978 0.015 +46: Performance: 18.879 1.271 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -32503,18 +32604,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 23 % of the run time was spent in pair search, +46: NOTE: 42 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 192.1 +46: Time: 0.030 0.015 199.7 46: (ns/day) (hour/ns) -46: Performance: 4583.775 0.005 +46: Performance: 99.031 0.242 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 (187 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 (285 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_input.mdp]: @@ -32559,9 +32660,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.0 +46: Time: 0.124 0.062 199.9 46: (ns/day) (hour/ns) -46: Performance: 1930.615 0.012 +46: Performance: 23.749 1.011 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Changing nstlist from 8 to 100, rlist from 0.733 to 0.824 46: @@ -32575,18 +32676,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 27 % of the run time was spent in pair search, +46: NOTE: 43 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 192.1 +46: Time: 0.038 0.019 199.8 46: (ns/day) (hour/ns) -46: Performance: 4109.802 0.006 +46: Performance: 77.416 0.310 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 (187 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 (277 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_input.mdp]: @@ -32631,9 +32732,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 193.0 +46: Time: 0.158 0.079 199.9 46: (ns/day) (hour/ns) -46: Performance: 1809.279 0.013 +46: Performance: 18.629 1.288 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Changing nstlist from 8 to 25, rlist from 0.759 to 0.912 46: @@ -32647,18 +32748,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 23 % of the run time was spent in pair search, +46: NOTE: 40 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 191.6 +46: Time: 0.036 0.018 199.7 46: (ns/day) (hour/ns) -46: Performance: 4126.319 0.006 +46: Performance: 81.752 0.294 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 (189 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 (289 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_input.mdp]: @@ -32724,9 +32825,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 195.3 +46: Time: 0.669 0.335 200.0 46: (ns/day) (hour/ns) -46: Performance: 866.591 0.028 +46: Performance: 4.391 5.466 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -32739,18 +32840,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 19 % of the run time was spent in pair search, +46: NOTE: 28 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 193.4 +46: Time: 0.310 0.155 199.9 46: (ns/day) (hour/ns) -46: Performance: 2408.363 0.010 +46: Performance: 9.486 2.530 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 (13 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 (550 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_input.mdp]: @@ -32816,9 +32917,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 195.5 +46: Time: 0.003 0.001 194.0 46: (ns/day) (hour/ns) -46: Performance: 788.909 0.030 +46: Performance: 1015.594 0.024 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -32831,18 +32932,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 18 % of the run time was spent in pair search, +46: NOTE: 48 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.7 +46: Time: 0.163 0.081 199.9 46: (ns/day) (hour/ns) -46: Performance: 2403.665 0.010 +46: Performance: 18.053 1.329 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 (15 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 (221 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_input.mdp]: @@ -32904,9 +33005,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.9 +46: Time: 0.248 0.124 199.9 46: (ns/day) (hour/ns) -46: Performance: 818.684 0.029 +46: Performance: 11.839 2.027 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Changing nstlist from 8 to 100, rlist from 0.744 to 0.868 46: @@ -32920,18 +33021,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 19 % of the run time was spent in pair search, +46: NOTE: 34 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 193.4 +46: Time: 0.952 0.476 200.0 46: (ns/day) (hour/ns) -46: Performance: 2340.651 0.010 +46: Performance: 3.087 7.775 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 (22 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 (842 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_input.mdp]: @@ -32993,9 +33094,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 196.1 +46: Time: 1.065 0.532 200.0 46: (ns/day) (hour/ns) -46: Performance: 663.857 0.036 +46: Performance: 2.759 8.698 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Changing nstlist from 8 to 40, rlist from 0.726 to 0.869 46: @@ -33009,19 +33110,19 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 19 % of the run time was spent in pair search, +46: NOTE: 33 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.7 +46: Time: 0.089 0.044 199.9 46: (ns/day) (hour/ns) -46: Performance: 2401.791 0.010 +46: Performance: 33.043 0.726 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 (20 ms) -46: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest (843 ms total) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 (650 ms) +46: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest (3714 ms total) 46: 46: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 @@ -33074,10 +33175,13 @@ 46: 46: Writing final coordinates. 46: +46: NOTE: 16 % of the run time was spent in pair search, +46: you might want to increase nstlist (this has no effect on accuracy) +46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.2 +46: Time: 0.282 0.141 199.9 46: (ns/day) (hour/ns) -46: Performance: 936.545 0.026 +46: Performance: 10.399 2.308 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -33090,18 +33194,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 15 % of the run time was spent in pair search, +46: NOTE: 24 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.1 +46: Time: 0.069 0.034 199.7 46: (ns/day) (hour/ns) -46: Performance: 1867.979 0.013 +46: Performance: 42.694 0.562 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 (14 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 (215 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_input.mdp]: @@ -33153,9 +33257,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 193.8 +46: Time: 0.278 0.139 199.9 46: (ns/day) (hour/ns) -46: Performance: 939.115 0.026 +46: Performance: 10.556 2.274 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -33168,18 +33272,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 15 % of the run time was spent in pair search, +46: NOTE: 39 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.7 +46: Time: 0.043 0.021 199.6 46: (ns/day) (hour/ns) -46: Performance: 1942.792 0.012 +46: Performance: 68.640 0.350 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 (14 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 (199 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_input.mdp]: @@ -33231,9 +33335,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.2 +46: Time: 0.169 0.085 199.8 46: (ns/day) (hour/ns) -46: Performance: 938.972 0.026 +46: Performance: 17.365 1.382 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -33246,18 +33350,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 39 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.6 +46: Time: 0.043 0.021 199.5 46: (ns/day) (hour/ns) -46: Performance: 1923.983 0.012 +46: Performance: 68.711 0.349 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 (13 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 (128 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_input.mdp]: @@ -33309,9 +33413,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.4 +46: Time: 0.170 0.085 199.8 46: (ns/day) (hour/ns) -46: Performance: 967.734 0.025 +46: Performance: 17.304 1.387 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -33324,18 +33428,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 38 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.5 +46: Time: 0.043 0.021 199.6 46: (ns/day) (hour/ns) -46: Performance: 1923.382 0.012 +46: Performance: 68.739 0.349 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 (13 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 (130 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_input.mdp]: @@ -33387,9 +33491,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 193.4 +46: Time: 0.169 0.085 199.8 46: (ns/day) (hour/ns) -46: Performance: 936.403 0.026 +46: Performance: 17.316 1.386 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -33402,18 +33506,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 15 % of the run time was spent in pair search, +46: NOTE: 38 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.7 +46: Time: 0.043 0.021 199.6 46: (ns/day) (hour/ns) -46: Performance: 2001.492 0.012 +46: Performance: 68.610 0.350 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 (13 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 (129 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_input.mdp]: @@ -33465,9 +33569,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.1 +46: Time: 0.170 0.085 199.8 46: (ns/day) (hour/ns) -46: Performance: 946.473 0.025 +46: Performance: 17.276 1.389 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -33480,18 +33584,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 39 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.0 +46: Time: 0.043 0.021 199.6 46: (ns/day) (hour/ns) -46: Performance: 2006.708 0.012 +46: Performance: 68.642 0.350 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 (13 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 (129 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_input.mdp]: @@ -33543,9 +33647,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.3 +46: Time: 0.169 0.085 199.8 46: (ns/day) (hour/ns) -46: Performance: 945.311 0.025 +46: Performance: 17.348 1.383 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -33558,18 +33662,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 39 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.3 +46: Time: 0.043 0.021 199.6 46: (ns/day) (hour/ns) -46: Performance: 2009.982 0.012 +46: Performance: 68.541 0.350 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 (13 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 (129 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_input.mdp]: @@ -33621,9 +33725,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.0 +46: Time: 0.169 0.084 199.8 46: (ns/day) (hour/ns) -46: Performance: 976.942 0.025 +46: Performance: 17.394 1.380 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -33636,18 +33740,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 16 % of the run time was spent in pair search, +46: NOTE: 38 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.5 +46: Time: 0.043 0.021 199.6 46: (ns/day) (hour/ns) -46: Performance: 1904.945 0.013 +46: Performance: 68.526 0.350 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 (13 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 (129 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_input.mdp]: @@ -33699,9 +33803,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 193.9 +46: Time: 0.170 0.085 199.8 46: (ns/day) (hour/ns) -46: Performance: 948.513 0.025 +46: Performance: 17.281 1.389 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -33714,18 +33818,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 39 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.8 +46: Time: 0.043 0.021 199.6 46: (ns/day) (hour/ns) -46: Performance: 2031.858 0.012 +46: Performance: 68.649 0.350 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 (14 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 (130 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_input.mdp]: @@ -33777,9 +33881,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.1 +46: Time: 0.169 0.084 199.8 46: (ns/day) (hour/ns) -46: Performance: 949.098 0.025 +46: Performance: 17.384 1.381 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -33792,18 +33896,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 39 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 189.0 +46: Time: 0.043 0.021 199.6 46: (ns/day) (hour/ns) -46: Performance: 1979.625 0.012 +46: Performance: 68.607 0.350 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 (13 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 (129 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_input.mdp]: @@ -33855,9 +33959,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.1 +46: Time: 0.169 0.084 199.8 46: (ns/day) (hour/ns) -46: Performance: 958.847 0.025 +46: Performance: 17.392 1.380 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -33870,18 +33974,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 38 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.3 +46: Time: 0.043 0.021 199.6 46: (ns/day) (hour/ns) -46: Performance: 2010.638 0.012 +46: Performance: 68.682 0.349 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 (13 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 (129 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_input.mdp]: @@ -33933,9 +34037,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 196.5 +46: Time: 0.216 0.108 199.9 46: (ns/day) (hour/ns) -46: Performance: 830.045 0.029 +46: Performance: 13.575 1.768 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -33948,18 +34052,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 39 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.5 +46: Time: 0.043 0.021 199.6 46: (ns/day) (hour/ns) -46: Performance: 1978.989 0.012 +46: Performance: 68.603 0.350 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 (13 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 (150 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_input.mdp]: @@ -34011,9 +34115,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 196.8 +46: Time: 0.220 0.110 199.9 46: (ns/day) (hour/ns) -46: Performance: 802.892 0.030 +46: Performance: 13.345 1.798 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -34026,18 +34130,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 39 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.8 +46: Time: 0.043 0.022 199.6 46: (ns/day) (hour/ns) -46: Performance: 2041.960 0.012 +46: Performance: 68.278 0.352 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 (13 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 (152 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_input.mdp]: @@ -34089,9 +34193,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 196.8 +46: Time: 0.217 0.109 199.9 46: (ns/day) (hour/ns) -46: Performance: 811.459 0.030 +46: Performance: 13.529 1.774 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -34104,18 +34208,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 38 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.5 +46: Time: 0.043 0.021 199.6 46: (ns/day) (hour/ns) -46: Performance: 2008.671 0.012 +46: Performance: 68.579 0.350 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 (13 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 (150 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_input.mdp]: @@ -34167,9 +34271,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 196.7 +46: Time: 0.217 0.108 199.9 46: (ns/day) (hour/ns) -46: Performance: 825.264 0.029 +46: Performance: 13.553 1.771 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -34182,18 +34286,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 39 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.3 +46: Time: 0.043 0.021 199.6 46: (ns/day) (hour/ns) -46: Performance: 1852.810 0.013 +46: Performance: 68.457 0.351 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 (14 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 (150 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_input.mdp]: @@ -34245,9 +34349,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 194.8 +46: Time: 0.217 0.108 199.9 46: (ns/day) (hour/ns) -46: Performance: 806.466 0.030 +46: Performance: 13.564 1.769 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -34260,18 +34364,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 38 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.8 +46: Time: 0.043 0.021 199.6 46: (ns/day) (hour/ns) -46: Performance: 2038.582 0.012 +46: Performance: 68.574 0.350 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 (13 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 (150 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_input.mdp]: @@ -34322,10 +34426,13 @@ 46: 46: Writing final coordinates. 46: +46: NOTE: 31 % of the run time was spent in pair search, +46: you might want to increase nstlist (this has no effect on accuracy) +46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 196.7 +46: Time: 0.217 0.109 199.9 46: (ns/day) (hour/ns) -46: Performance: 811.352 0.030 +46: Performance: 13.525 1.775 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -34338,18 +34445,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 15 % of the run time was spent in pair search, +46: NOTE: 22 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.5 +46: Time: 0.076 0.038 199.7 46: (ns/day) (hour/ns) -46: Performance: 1985.367 0.012 +46: Performance: 38.473 0.624 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 (13 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 (171 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_input.mdp]: @@ -34401,9 +34508,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 196.8 +46: Time: 0.363 0.182 200.0 46: (ns/day) (hour/ns) -46: Performance: 833.526 0.029 +46: Performance: 8.089 2.967 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -34416,18 +34523,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 20 % of the run time was spent in pair search, +46: NOTE: 37 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.8 +46: Time: 0.073 0.037 199.7 46: (ns/day) (hour/ns) -46: Performance: 1864.022 0.013 +46: Performance: 40.007 0.600 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 (14 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 (255 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_input.mdp]: @@ -34479,9 +34586,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 196.7 +46: Time: 0.364 0.182 200.0 46: (ns/day) (hour/ns) -46: Performance: 804.780 0.030 +46: Performance: 8.066 2.975 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -34494,18 +34601,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 26 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 193.0 +46: Time: 0.063 0.032 199.7 46: (ns/day) (hour/ns) -46: Performance: 2019.867 0.012 +46: Performance: 46.369 0.518 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 (13 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 (253 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_input.mdp]: @@ -34557,9 +34664,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 196.9 +46: Time: 0.242 0.121 199.9 46: (ns/day) (hour/ns) -46: Performance: 813.172 0.030 +46: Performance: 12.159 1.974 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -34572,18 +34679,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 39 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.5 +46: Time: 0.042 0.021 199.6 46: (ns/day) (hour/ns) -46: Performance: 2043.315 0.012 +46: Performance: 69.267 0.346 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 (13 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 (177 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_input.mdp]: @@ -34635,9 +34742,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 196.8 +46: Time: 0.298 0.149 199.9 46: (ns/day) (hour/ns) -46: Performance: 836.469 0.029 +46: Performance: 9.842 2.439 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -34650,18 +34757,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 16 % of the run time was spent in pair search, +46: NOTE: 25 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.5 +46: Time: 0.066 0.033 199.7 46: (ns/day) (hour/ns) -46: Performance: 1952.026 0.012 +46: Performance: 44.454 0.540 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 (14 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 (199 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_input.mdp]: @@ -34713,9 +34820,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 196.6 +46: Time: 0.218 0.109 199.9 46: (ns/day) (hour/ns) -46: Performance: 815.541 0.029 +46: Performance: 13.498 1.778 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -34728,18 +34835,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 38 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.9 +46: Time: 0.043 0.021 199.6 46: (ns/day) (hour/ns) -46: Performance: 2011.294 0.012 +46: Performance: 68.354 0.351 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 (13 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 (162 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_input.mdp]: @@ -34787,9 +34894,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 194.4 +46: Time: 0.215 0.107 199.9 46: (ns/day) (hour/ns) -46: Performance: 809.859 0.030 +46: Performance: 13.685 1.754 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 46: @@ -34803,18 +34910,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 35 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.2 +46: Time: 0.047 0.023 199.7 46: (ns/day) (hour/ns) -46: Performance: 1939.734 0.012 +46: Performance: 62.516 0.384 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 (19 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 (160 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_input.mdp]: @@ -34862,9 +34969,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.5 +46: Time: 0.215 0.107 199.9 46: (ns/day) (hour/ns) -46: Performance: 834.656 0.029 +46: Performance: 13.667 1.756 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 46: @@ -34878,18 +34985,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 18 % of the run time was spent in pair search, +46: NOTE: 35 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.6 +46: Time: 0.047 0.023 199.6 46: (ns/day) (hour/ns) -46: Performance: 1806.096 0.013 +46: Performance: 62.591 0.383 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 (20 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 (160 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_input.mdp]: @@ -34937,9 +35044,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.5 +46: Time: 0.216 0.108 199.9 46: (ns/day) (hour/ns) -46: Performance: 839.661 0.029 +46: Performance: 13.616 1.763 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 46: @@ -34953,18 +35060,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 35 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 191.3 +46: Time: 0.047 0.023 199.6 46: (ns/day) (hour/ns) -46: Performance: 1848.363 0.013 +46: Performance: 62.585 0.383 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 (19 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 (160 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_input.mdp]: @@ -35012,9 +35119,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.7 +46: Time: 0.215 0.107 199.9 46: (ns/day) (hour/ns) -46: Performance: 846.817 0.028 +46: Performance: 13.675 1.755 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 46: @@ -35028,18 +35135,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 35 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.3 +46: Time: 0.047 0.024 199.6 46: (ns/day) (hour/ns) -46: Performance: 1906.124 0.013 +46: Performance: 62.276 0.385 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 (20 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 (160 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_input.mdp]: @@ -35087,9 +35194,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.4 +46: Time: 0.215 0.107 199.9 46: (ns/day) (hour/ns) -46: Performance: 845.539 0.028 +46: Performance: 13.675 1.755 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 46: @@ -35103,18 +35210,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 35 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.6 +46: Time: 0.047 0.023 199.7 46: (ns/day) (hour/ns) -46: Performance: 1878.803 0.013 +46: Performance: 62.608 0.383 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 (19 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 (160 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_input.mdp]: @@ -35162,9 +35269,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.3 +46: Time: 0.215 0.107 199.9 46: (ns/day) (hour/ns) -46: Performance: 830.493 0.029 +46: Performance: 13.676 1.755 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 46: @@ -35178,18 +35285,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 35 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 191.2 +46: Time: 0.047 0.024 199.6 46: (ns/day) (hour/ns) -46: Performance: 1915.012 0.013 +46: Performance: 62.391 0.385 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 (19 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 (160 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_input.mdp]: @@ -35237,9 +35344,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.6 +46: Time: 0.215 0.107 199.9 46: (ns/day) (hour/ns) -46: Performance: 836.583 0.029 +46: Performance: 13.665 1.756 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 46: @@ -35253,18 +35360,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 35 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.2 +46: Time: 0.047 0.024 199.7 46: (ns/day) (hour/ns) -46: Performance: 1925.787 0.012 +46: Performance: 62.240 0.386 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 (20 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 (160 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_input.mdp]: @@ -35312,9 +35419,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.2 +46: Time: 0.215 0.107 199.9 46: (ns/day) (hour/ns) -46: Performance: 831.614 0.029 +46: Performance: 13.681 1.754 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 46: @@ -35328,18 +35435,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 35 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.0 +46: Time: 0.047 0.023 199.6 46: (ns/day) (hour/ns) -46: Performance: 1930.011 0.012 +46: Performance: 62.577 0.384 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 (19 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 (160 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_input.mdp]: @@ -35387,9 +35494,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.6 +46: Time: 0.215 0.108 199.9 46: (ns/day) (hour/ns) -46: Performance: 835.901 0.029 +46: Performance: 13.658 1.757 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 46: @@ -35403,18 +35510,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 12 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 191.8 +46: Time: 0.001 0.001 191.7 46: (ns/day) (hour/ns) -46: Performance: 1854.483 0.013 +46: Performance: 1975.816 0.012 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 (20 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 (138 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_input.mdp]: @@ -35462,9 +35569,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.3 +46: Time: 0.168 0.084 199.8 46: (ns/day) (hour/ns) -46: Performance: 836.696 0.029 +46: Performance: 17.491 1.372 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 46: @@ -35478,18 +35585,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 48 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 173.6 +46: Time: 0.265 0.133 199.9 46: (ns/day) (hour/ns) -46: Performance: 1730.990 0.014 +46: Performance: 11.082 2.166 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 (19 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 (332 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_input.mdp]: @@ -35537,9 +35644,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.4 +46: Time: 0.168 0.084 199.8 46: (ns/day) (hour/ns) -46: Performance: 851.381 0.028 +46: Performance: 17.483 1.373 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 46: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 46: @@ -35553,24 +35660,24 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 39 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 191.9 +46: Time: 0.497 0.248 200.0 46: (ns/day) (hour/ns) -46: Performance: 1940.344 0.012 +46: Performance: 5.911 4.060 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_sim1.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_sim2.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 (19 ms) -46: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest (506 ms total) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 (484 ms) +46: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest (5779 ms total) 46: 46: [----------] Global test environment tear-down -46: [==========] 58 tests from 5 test cases ran. (2081 ms total) +46: [==========] 58 tests from 5 test cases ran. (11609 ms total) 46: [ PASSED ] 58 tests. -46/54 Test #46: MdrunNonIntegratorTests ............. Passed 2.10 sec +46/54 Test #46: MdrunNonIntegratorTests ............. Passed 11.64 sec test 47 Start 47: MdrunTpiTests @@ -35604,7 +35711,7 @@ 47: There are: 1 Other residues 47: Analysing residues not classified as Protein/DNA/RNA/Water and splitting into groups... 47: This run will generate roughly 0 Mb of data -47: [ OK ] Simple/TpiTest.ReproducesOutput/0 (260 ms) +47: [ OK ] Simple/TpiTest.ReproducesOutput/0 (483 ms) 47: [ RUN ] Simple/TpiTest.ReproducesOutput/1 47: Ignoring obsolete mdp entry 'ns_type' 47: Generated 331705 of the 331705 non-bonded parameter combinations @@ -35630,13 +35737,13 @@ 47: There are: 1 Other residues 47: Analysing residues not classified as Protein/DNA/RNA/Water and splitting into groups... 47: This run will generate roughly 0 Mb of data -47: [ OK ] Simple/TpiTest.ReproducesOutput/1 (197 ms) -47: [----------] 2 tests from Simple/TpiTest (457 ms total) +47: [ OK ] Simple/TpiTest.ReproducesOutput/1 (644 ms) +47: [----------] 2 tests from Simple/TpiTest (1127 ms total) 47: 47: [----------] Global test environment tear-down -47: [==========] 2 tests from 1 test case ran. (457 ms total) +47: [==========] 2 tests from 1 test case ran. (1127 ms total) 47: [ PASSED ] 2 tests. -47/54 Test #47: MdrunTpiTests ....................... Passed 0.48 sec +47/54 Test #47: MdrunTpiTests ....................... Passed 1.16 sec test 48 Start 48: MdrunMpiTests @@ -35651,7 +35758,7 @@ 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -1778914593 +48: Setting the LD random seed to -1648714850 48: Generated 3 of the 3 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 3 of the 3 1-4 parameter combinations @@ -35683,17 +35790,17 @@ 48: starting mdrun 'spc2' 48: 0 steps, 0.0 ps. 48: -48: NOTE: 25 % of the run time was spent in domain decomposition, -48: 19 % of the run time was spent in pair search, +48: NOTE: 32 % of the run time was spent in domain decomposition, +48: 20 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.001 0.000 290.1 +48: Time: 0.704 0.176 399.8 48: (ns/day) (hour/ns) -48: Performance: 277.692 0.086 +48: Performance: 0.491 48.921 48: This run will generate roughly 0 Mb of data -48: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (26 ms) -48: [----------] 1 test from DomainDecompositionSpecialCasesTest (26 ms total) +48: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (415 ms) +48: [----------] 1 test from DomainDecompositionSpecialCasesTest (415 ms total) 48: 48: [----------] 4 tests from MimicTest 48: [ RUN ] MimicTest.OneQuantumMol @@ -35702,7 +35809,7 @@ 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -1360054786 +48: Setting the LD random seed to -165001 48: Generated 10 of the 10 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 10 of the 10 1-4 parameter combinations @@ -35736,24 +35843,24 @@ 48: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 16 % of the run time was spent in domain decomposition, -48: 13 % of the run time was spent in pair search, +48: NOTE: 85 % of the run time was spent in domain decomposition, +48: 5 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.002 0.000 378.8 +48: Time: 0.261 0.065 399.8 48: (ns/day) (hour/ns) -48: Performance: 187.523 0.128 +48: Performance: 1.323 18.147 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_OneQuantumMol.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.OneQuantumMol (9 ms) +48: [ OK ] MimicTest.OneQuantumMol (165 ms) 48: [ RUN ] MimicTest.AllQuantumMol 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to 1584910319 +48: Setting the LD random seed to -23088385 48: Generated 10 of the 10 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 10 of the 10 1-4 parameter combinations @@ -35787,24 +35894,24 @@ 48: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 16 % of the run time was spent in domain decomposition, -48: 12 % of the run time was spent in pair search, +48: NOTE: 71 % of the run time was spent in domain decomposition, +48: 5 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.002 0.000 378.7 +48: Time: 1.112 0.278 400.0 48: (ns/day) (hour/ns) -48: Performance: 189.533 0.127 +48: Performance: 0.311 77.253 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.AllQuantumMol (9 ms) +48: [ OK ] MimicTest.AllQuantumMol (499 ms) 48: [ RUN ] MimicTest.TwoQuantumMol 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -58741781 +48: Setting the LD random seed to -201402410 48: Generated 10 of the 10 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 10 of the 10 1-4 parameter combinations @@ -35838,24 +35945,27 @@ 48: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 15 % of the run time was spent in domain decomposition, -48: 21 % of the run time was spent in pair search, +48: NOTE: 68 % of the run time was spent in domain decomposition, +48: 4 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: +48: NOTE: 17 % of the run time was spent communicating energies, +48: you might want to increase some nst* mdp options +48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.002 0.000 380.8 +48: Time: 0.624 0.156 399.9 48: (ns/day) (hour/ns) -48: Performance: 185.175 0.130 +48: Performance: 0.554 43.345 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.TwoQuantumMol (9 ms) +48: [ OK ] MimicTest.TwoQuantumMol (548 ms) 48: [ RUN ] MimicTest.BondCuts 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -69337411 +48: Setting the LD random seed to 2113403517 48: Generated 2211 of the 2211 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 2211 of the 2211 1-4 parameter combinations @@ -35889,22 +35999,25 @@ 48: Reading frames from gro file 'Alanine dipeptide in water', 23 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 14 % of the run time was spent in domain decomposition, -48: 18 % of the run time was spent in pair search, +48: NOTE: 64 % of the run time was spent in domain decomposition, +48: 2 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: +48: NOTE: 7 % of the run time was spent communicating energies, +48: you might want to increase some nst* mdp options +48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.003 0.001 386.6 +48: Time: 0.240 0.060 399.8 48: (ns/day) (hour/ns) -48: Performance: 123.261 0.195 +48: Performance: 1.437 16.703 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300.368 K 48: Calculated rlist for 1x1 atom pair-list as 1.034 nm, buffer size 0.034 nm 48: Set rlist, assuming 4x4 atom pair-list, to 1.025 nm, buffer size 0.025 nm 48: Note that mdrun will redetermine rlist based on the actual pair-list setup 48: This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.BondCuts (25 ms) -48: [----------] 4 tests from MimicTest (52 ms total) +48: [ OK ] MimicTest.BondCuts (208 ms) +48: [----------] 4 tests from MimicTest (1420 ms total) 48: 48: [----------] 1 test from MultiSimTerminationTest 48: [ RUN ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -35913,7 +36026,7 @@ 48: 48: [----------] 3 tests from PmeTest 48: [ RUN ] PmeTest.ReproducesEnergies -48: Setting the LD random seed to -21323873 +48: Setting the LD random seed to -488772006 48: Generated 8 of the 10 non-bonded parameter combinations 48: Excluding 2 bonded neighbours molecule type 'Methanol' 48: Excluding 2 bonded neighbours molecule type 'SOL' @@ -35957,9 +36070,9 @@ 48: Writing final coordinates. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.059 0.015 398.9 +48: Time: 2.527 0.632 400.0 48: (ns/day) (hour/ns) -48: Performance: 123.447 0.194 +48: Performance: 2.872 8.357 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 48: Can not increase nstlist because an NVE ensemble is used @@ -35978,9 +36091,9 @@ 48: Writing final coordinates. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.056 0.014 399.0 +48: Time: 2.783 0.717 388.1 48: (ns/day) (hour/ns) -48: Performance: 129.513 0.185 +48: Performance: 2.531 9.483 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 48: Can not increase nstlist because an NVE ensemble is used @@ -35999,18 +36112,18 @@ 48: Writing final coordinates. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.056 0.014 399.0 +48: Time: 1.481 0.370 399.9 48: (ns/day) (hour/ns) -48: Performance: 129.785 0.185 +48: Performance: 4.901 4.897 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as single precision energy file -48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (9713 ms) +48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (24665 ms) 48: [ RUN ] PmeTest.ScalesTheBox 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to 1335615432 +48: Setting the LD random seed to -134383106 48: Generated 8 of the 10 non-bonded parameter combinations 48: Excluding 2 bonded neighbours molecule type 'Methanol' 48: Excluding 2 bonded neighbours molecule type 'SOL' @@ -36045,9 +36158,9 @@ 48: 0 steps, 0.0 ps. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.003 0.001 381.3 +48: Time: 0.364 0.109 334.0 48: (ns/day) (hour/ns) -48: Performance: 110.958 0.216 +48: Performance: 0.793 30.255 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_spc-and-methanol_PmeOnCpu.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K 48: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -36056,14 +36169,14 @@ 48: Calculating fourier grid dimensions for X Y Z 48: Using a fourier grid of 28x28x28, spacing 0.108 0.108 0.108 48: This run will generate roughly 0 Mb of data -48: [ OK ] PmeTest.ScalesTheBox (8 ms) +48: [ OK ] PmeTest.ScalesTheBox (247 ms) 48: [ RUN ] PmeTest.ScalesTheBoxWithWalls 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -268705927 +48: Setting the LD random seed to -67504425 48: Generated 8 of the 10 non-bonded parameter combinations 48: Excluding 2 bonded neighbours molecule type 'Methanol' 48: Excluding 2 bonded neighbours molecule type 'SOL' @@ -36098,10 +36211,14 @@ 48: starting mdrun 'spc-and-methanol' 48: 0 steps, 0.0 ps. 48: +48: NOTE: 35 % of the run time was spent in domain decomposition, +48: 7 % of the run time was spent in pair search, +48: you might want to increase nstlist (this has no effect on accuracy) +48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.011 0.003 393.1 +48: Time: 0.126 0.032 399.3 48: (ns/day) (hour/ns) -48: Performance: 30.020 0.799 +48: Performance: 2.736 8.770 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_spc-and-methanol_PmeOnCpu.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 966.268 K 48: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -36110,8 +36227,8 @@ 48: Calculating fourier grid dimensions for X Y Z 48: Using a fourier grid of 28x28x128, spacing 0.108 0.108 0.118 48: This run will generate roughly 0 Mb of data -48: [ OK ] PmeTest.ScalesTheBoxWithWalls (29970 ms) -48: [----------] 3 tests from PmeTest (39691 ms total) +48: [ OK ] PmeTest.ScalesTheBoxWithWalls (61496 ms) +48: [----------] 3 tests from PmeTest (86408 ms total) 48: 48: [----------] 1 test from ReplicaExchangeTerminationTest 48: [ RUN ] ReplicaExchangeTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -36169,7 +36286,7 @@ 48: Norm of force = 8.7722056e+01 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (197 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (766 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -36223,7 +36340,7 @@ 48: Norm of force = 1.8452919e+02 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (189 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (639 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -36275,7 +36392,7 @@ 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 turning H bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (63 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (670 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -36334,7 +36451,7 @@ 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning H bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (62 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (726 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -36396,7 +36513,7 @@ 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 3.000 Last energy frame read 2 time 3.000 turning all bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (11 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (713 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -36465,8 +36582,8 @@ 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning all bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (12 ms) -48: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (534 ms total) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (1811 ms) +48: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (5325 ms total) 48: 48: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 @@ -36508,7 +36625,7 @@ 48: Norm of force = 1.6383933e+00 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (4 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (247 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -36551,7 +36668,7 @@ 48: Norm of force = 1.0525324e+00 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (4 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (404 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -36576,7 +36693,7 @@ 48: 48: There was 1 warning 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (2 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (3 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -36627,7 +36744,7 @@ 48: Norm of force = 4.6227537e+03 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (63 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (1134 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -36681,7 +36798,7 @@ 48: Norm of force = 3.6139019e+03 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (62 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (1348 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -36714,16 +36831,16 @@ 48: 48: There was 1 warning 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (59 ms) -48: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (194 ms total) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (88 ms) +48: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (3224 ms total) 48: 48: [----------] Global test environment tear-down -48: [==========] 22 tests from 7 test cases ran. (40497 ms total) +48: [==========] 22 tests from 7 test cases ran. (96792 ms total) 48: [ PASSED ] 22 tests. 48: 48: YOU HAVE 4 DISABLED TESTS 48: -48/54 Test #48: MdrunMpiTests ....................... Passed 40.52 sec +48/54 Test #48: MdrunMpiTests ....................... Passed 96.82 sec test 49 Start 49: MdrunMpiCoordinationTestsOneRank @@ -36772,9 +36889,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.003 0.003 97.8 +49: Time: 0.005 0.006 99.5 49: (ns/day) (hour/ns) -49: Performance: 531.636 0.045 +49: Performance: 265.864 0.090 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -36814,9 +36931,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.001 0.001 95.9 49: (ns/day) (hour/ns) -49: Performance: 1024.716 0.023 +49: Performance: 2099.010 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -36858,9 +36975,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.005 0.005 98.9 49: (ns/day) (hour/ns) -49: Performance: 1303.829 0.018 +49: Performance: 311.582 0.077 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -36902,9 +37019,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.000 0.001 95.7 49: (ns/day) (hour/ns) -49: Performance: 1326.571 0.018 +49: Performance: 2836.369 0.008 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: @@ -36946,9 +37063,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.000 0.001 95.6 49: (ns/day) (hour/ns) -49: Performance: 1590.241 0.015 +49: Performance: 2824.665 0.008 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: @@ -36990,13 +37107,13 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.000 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 1664.126 0.014 +49: Performance: 2842.914 0.008 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file -49: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (68 ms) -49: [----------] 1 test from BasicPropagators/PeriodicActionsTest (68 ms total) +49: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (77 ms) +49: [----------] 1 test from BasicPropagators/PeriodicActionsTest (77 ms total) 49: 49: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -37039,9 +37156,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.000 0.000 95.0 49: (ns/day) (hour/ns) -49: Performance: 1973.284 0.012 +49: Performance: 3060.404 0.008 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -37081,9 +37198,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.000 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 1837.338 0.013 +49: Performance: 2889.584 0.008 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -37125,9 +37242,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.000 0.001 95.2 49: (ns/day) (hour/ns) -49: Performance: 2089.754 0.011 +49: Performance: 2835.064 0.008 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -37169,9 +37286,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.5 +49: Time: 0.000 0.001 95.2 49: (ns/day) (hour/ns) -49: Performance: 1497.471 0.016 +49: Performance: 2911.434 0.008 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: @@ -37213,9 +37330,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.000 0.001 95.5 49: (ns/day) (hour/ns) -49: Performance: 2119.957 0.011 +49: Performance: 2908.684 0.008 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: @@ -37257,12 +37374,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.005 0.005 99.4 49: (ns/day) (hour/ns) -49: Performance: 2133.170 0.011 +49: Performance: 310.061 0.077 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (31 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (50 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -37303,9 +37420,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.1 +49: Time: 0.000 0.000 95.0 49: (ns/day) (hour/ns) -49: Performance: 2379.526 0.010 +49: Performance: 3021.380 0.008 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -37347,7 +37464,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 95.1 49: (ns/day) (hour/ns) -49: Performance: 2303.887 0.010 +49: Performance: 2750.265 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -37389,9 +37506,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 95.2 49: (ns/day) (hour/ns) -49: Performance: 2349.578 0.010 +49: Performance: 2745.363 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -37433,9 +37550,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 95.2 49: (ns/day) (hour/ns) -49: Performance: 2456.377 0.010 +49: Performance: 2749.038 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: @@ -37477,9 +37594,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.001 0.001 95.2 49: (ns/day) (hour/ns) -49: Performance: 2422.569 0.010 +49: Performance: 2765.078 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: @@ -37521,12 +37638,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.4 +49: Time: 0.000 0.001 95.2 49: (ns/day) (hour/ns) -49: Performance: 1731.963 0.014 +49: Performance: 2836.369 0.008 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (27 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (45 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -37567,9 +37684,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 88.8 +49: Time: 0.000 0.001 94.7 49: (ns/day) (hour/ns) -49: Performance: 2570.127 0.009 +49: Performance: 2865.392 0.008 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -37609,9 +37726,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 95.0 49: (ns/day) (hour/ns) -49: Performance: 2474.134 0.010 +49: Performance: 2728.341 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -37653,9 +37770,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.001 0.001 94.9 49: (ns/day) (hour/ns) -49: Performance: 2528.979 0.009 +49: Performance: 2660.015 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -37697,9 +37814,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 95.0 49: (ns/day) (hour/ns) -49: Performance: 2623.762 0.009 +49: Performance: 2690.216 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: @@ -37741,9 +37858,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.005 0.005 99.3 49: (ns/day) (hour/ns) -49: Performance: 2684.355 0.009 +49: Performance: 309.003 0.078 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: @@ -37785,12 +37902,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2646.303 0.009 +49: Performance: 2776.293 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (23 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (58 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -37829,7 +37946,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.000 0.000 95.1 49: (ns/day) (hour/ns) -49: Performance: 2996.398 0.008 +49: Performance: 3136.759 0.008 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -37865,9 +37982,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.000 0.001 95.4 +49: Time: 0.000 0.000 95.4 49: (ns/day) (hour/ns) -49: Performance: 2819.494 0.009 +49: Performance: 2937.813 0.008 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -37905,9 +38022,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.000 0.001 95.0 49: (ns/day) (hour/ns) -49: Performance: 2711.529 0.009 +49: Performance: 2885.524 0.008 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -37945,9 +38062,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.000 0.001 95.1 49: (ns/day) (hour/ns) -49: Performance: 2683.185 0.009 +49: Performance: 2923.870 0.008 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: @@ -37985,9 +38102,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.000 0.001 95.4 +49: Time: 0.000 0.001 95.0 49: (ns/day) (hour/ns) -49: Performance: 2838.983 0.008 +49: Performance: 2880.128 0.008 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: @@ -38025,12 +38142,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.000 0.001 94.9 49: (ns/day) (hour/ns) -49: Performance: 2745.363 0.009 +49: Performance: 2850.807 0.008 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (21 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (47 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -38067,9 +38184,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.000 0.001 94.9 49: (ns/day) (hour/ns) -49: Performance: 2798.998 0.009 +49: Performance: 2816.915 0.009 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -38107,7 +38224,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2704.387 0.009 +49: Performance: 2787.599 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -38145,9 +38262,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.0 +49: Time: 0.001 0.001 95.4 49: (ns/day) (hour/ns) -49: Performance: 2709.144 0.009 +49: Performance: 2724.721 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -38185,9 +38302,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 94.7 49: (ns/day) (hour/ns) -49: Performance: 2680.850 0.009 +49: Performance: 2495.178 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: @@ -38225,9 +38342,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.2 +49: Time: 0.009 0.009 99.6 49: (ns/day) (hour/ns) -49: Performance: 2717.509 0.009 +49: Performance: 168.950 0.142 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: @@ -38265,12 +38382,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.000 0.001 95.0 49: (ns/day) (hour/ns) -49: Performance: 2715.114 0.009 +49: Performance: 2818.204 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (21 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (57 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -38307,9 +38424,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.000 0.001 95.1 +49: Time: 0.000 0.000 95.1 49: (ns/day) (hour/ns) -49: Performance: 2816.915 0.009 +49: Performance: 3011.043 0.008 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -38345,9 +38462,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.0 +49: Time: 0.001 0.001 95.1 49: (ns/day) (hour/ns) -49: Performance: 2692.567 0.009 +49: Performance: 2757.652 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -38385,9 +38502,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.001 0.001 94.9 49: (ns/day) (hour/ns) -49: Performance: 2678.519 0.009 +49: Performance: 2718.709 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -38425,9 +38542,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.1 +49: Time: 0.000 0.001 94.9 49: (ns/day) (hour/ns) -49: Performance: 2622.645 0.009 +49: Performance: 2792.654 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: @@ -38465,9 +38582,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.001 0.001 94.9 49: (ns/day) (hour/ns) -49: Performance: 2679.684 0.009 +49: Performance: 2735.610 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: @@ -38505,12 +38622,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.000 0.001 94.8 49: (ns/day) (hour/ns) -49: Performance: 2693.745 0.009 +49: Performance: 2833.760 0.008 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (22 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (50 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -38551,9 +38668,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.000 0.000 95.3 +49: Time: 0.000 0.000 94.8 49: (ns/day) (hour/ns) -49: Performance: 3033.281 0.008 +49: Performance: 3028.807 0.008 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -38593,9 +38710,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.000 0.001 95.3 +49: Time: 0.000 0.001 95.4 49: (ns/day) (hour/ns) -49: Performance: 2849.488 0.008 +49: Performance: 2885.524 0.008 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -38637,9 +38754,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.000 0.001 94.8 49: (ns/day) (hour/ns) -49: Performance: 2653.141 0.009 +49: Performance: 2841.602 0.008 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -38681,9 +38798,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.000 0.001 95.0 49: (ns/day) (hour/ns) -49: Performance: 2713.918 0.009 +49: Performance: 2850.807 0.008 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: @@ -38725,9 +38842,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.000 0.001 94.9 49: (ns/day) (hour/ns) -49: Performance: 2744.140 0.009 +49: Performance: 2876.094 0.008 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: @@ -38769,12 +38886,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.1 49: (ns/day) (hour/ns) -49: Performance: 2702.015 0.009 +49: Performance: 2615.963 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (21 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (59 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -38822,9 +38939,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.000 0.001 95.0 +49: Time: 0.009 0.009 99.6 49: (ns/day) (hour/ns) -49: Performance: 2877.438 0.008 +49: Performance: 166.251 0.144 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -38871,9 +38988,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.1 +49: Time: 0.003 0.003 98.8 49: (ns/day) (hour/ns) -49: Performance: 2776.293 0.009 +49: Performance: 494.628 0.049 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -38922,9 +39039,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.2 +49: Time: 0.000 0.001 95.0 49: (ns/day) (hour/ns) -49: Performance: 2730.760 0.009 +49: Performance: 2844.226 0.008 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -38973,9 +39090,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 94.9 49: (ns/day) (hour/ns) -49: Performance: 2752.723 0.009 +49: Performance: 2716.311 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: @@ -39024,9 +39141,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.001 0.001 94.9 49: (ns/day) (hour/ns) -49: Performance: 2757.652 0.009 +49: Performance: 2725.926 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: @@ -39075,12 +39192,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.2 +49: Time: 0.001 0.001 95.0 49: (ns/day) (hour/ns) -49: Performance: 2636.112 0.009 +49: Performance: 2705.575 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (21 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (65 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: @@ -39121,9 +39238,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.000 0.001 94.7 +49: Time: 0.000 0.001 94.8 49: (ns/day) (hour/ns) -49: Performance: 2896.377 0.008 +49: Performance: 2935.014 0.008 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -39163,9 +39280,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.1 +49: Time: 0.000 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2735.610 0.009 +49: Performance: 2828.555 0.008 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -39207,9 +39324,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.000 0.001 95.0 49: (ns/day) (hour/ns) -49: Performance: 2636.112 0.009 +49: Performance: 2835.064 0.008 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -39251,9 +39368,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.0 +49: Time: 0.001 0.001 95.4 49: (ns/day) (hour/ns) -49: Performance: 2627.119 0.009 +49: Performance: 2777.545 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 49: @@ -39295,9 +39412,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.1 +49: Time: 0.001 0.001 95.0 49: (ns/day) (hour/ns) -49: Performance: 2642.897 0.009 +49: Performance: 2788.861 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 49: @@ -39339,12 +39456,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.2 +49: Time: 0.001 0.001 94.8 49: (ns/day) (hour/ns) -49: Performance: 2680.850 0.009 +49: Performance: 2777.545 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (22 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (56 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: @@ -39381,9 +39498,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.000 0.001 95.4 +49: Time: 0.000 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2895.016 0.008 +49: Performance: 2910.058 0.008 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -39419,9 +39536,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.009 0.009 99.6 49: (ns/day) (hour/ns) -49: Performance: 2692.567 0.009 +49: Performance: 167.658 0.143 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -39459,9 +39576,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.009 0.009 99.6 49: (ns/day) (hour/ns) -49: Performance: 2550.970 0.009 +49: Performance: 168.391 0.143 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -39499,9 +39616,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.4 +49: Time: 0.001 0.001 92.6 49: (ns/day) (hour/ns) -49: Performance: 1944.018 0.012 +49: Performance: 2670.392 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 49: @@ -39539,9 +39656,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.000 0.001 95.4 49: (ns/day) (hour/ns) -49: Performance: 2586.311 0.009 +49: Performance: 2886.876 0.008 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 49: @@ -39579,12 +39696,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.000 0.001 95.5 49: (ns/day) (hour/ns) -49: Performance: 2662.314 0.009 +49: Performance: 2815.628 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (21 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (45 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: @@ -39621,9 +39738,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.1 +49: Time: 0.001 0.001 95.2 49: (ns/day) (hour/ns) -49: Performance: 2725.926 0.009 +49: Performance: 2604.902 0.009 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -39659,9 +39776,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 95.2 49: (ns/day) (hour/ns) -49: Performance: 2536.267 0.009 +49: Performance: 2744.140 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -39699,9 +39816,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.001 0.001 95.4 49: (ns/day) (hour/ns) -49: Performance: 2522.766 0.010 +49: Performance: 2684.355 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -39739,9 +39856,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 95.2 49: (ns/day) (hour/ns) -49: Performance: 2578.733 0.009 +49: Performance: 2756.418 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 49: @@ -39779,9 +39896,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2640.632 0.009 +49: Performance: 2665.770 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 49: @@ -39819,12 +39936,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2596.120 0.009 +49: Performance: 2704.387 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (22 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (50 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: @@ -39860,13 +39977,10 @@ 49: 49: Writing final coordinates. 49: -49: NOTE: 26 % of the run time was spent in pair search, -49: you might want to increase nstlist (this has no effect on accuracy) -49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.2 +49: Time: 0.009 0.009 99.6 49: (ns/day) (hour/ns) -49: Performance: 2015.242 0.012 +49: Performance: 168.825 0.142 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -39902,9 +40016,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.000 0.001 95.2 49: (ns/day) (hour/ns) -49: Performance: 2470.166 0.010 +49: Performance: 2800.270 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -39942,9 +40056,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2544.648 0.009 +49: Performance: 2760.123 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -39984,7 +40098,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 95.4 49: (ns/day) (hour/ns) -49: Performance: 2629.361 0.009 +49: Performance: 2707.953 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 49: @@ -40022,9 +40136,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.2 49: (ns/day) (hour/ns) -49: Performance: 2542.548 0.009 +49: Performance: 2734.396 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 49: @@ -40064,10 +40178,10 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2518.640 0.010 +49: Performance: 2751.493 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 (22 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 (46 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_input.mdp]: @@ -40108,9 +40222,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 96.0 49: (ns/day) (hour/ns) -49: Performance: 2362.191 0.010 +49: Performance: 2469.176 0.010 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -40150,9 +40264,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.4 +49: Time: 0.001 0.001 97.7 49: (ns/day) (hour/ns) -49: Performance: 2261.598 0.011 +49: Performance: 2377.690 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -40194,9 +40308,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.6 +49: Time: 0.001 0.001 97.5 49: (ns/day) (hour/ns) -49: Performance: 2256.628 0.011 +49: Performance: 2395.254 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -40238,9 +40352,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.5 +49: Time: 0.001 0.001 97.4 49: (ns/day) (hour/ns) -49: Performance: 2257.455 0.011 +49: Performance: 2329.147 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 49: @@ -40282,9 +40396,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.6 +49: Time: 0.001 0.001 97.1 49: (ns/day) (hour/ns) -49: Performance: 2285.087 0.011 +49: Performance: 2317.755 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 49: @@ -40326,12 +40440,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.7 +49: Time: 0.001 0.001 97.3 49: (ns/day) (hour/ns) -49: Performance: 2194.725 0.011 +49: Performance: 2165.411 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 (21 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 (58 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_input.mdp]: @@ -40372,9 +40486,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.005 0.005 99.3 49: (ns/day) (hour/ns) -49: Performance: 2602.701 0.009 +49: Performance: 309.484 0.078 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -40414,9 +40528,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.4 49: (ns/day) (hour/ns) -49: Performance: 2515.555 0.010 +49: Performance: 2676.192 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -40458,9 +40572,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 95.6 49: (ns/day) (hour/ns) -49: Performance: 2524.833 0.010 +49: Performance: 2696.102 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -40502,9 +40616,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.2 49: (ns/day) (hour/ns) -49: Performance: 2493.158 0.010 +49: Performance: 2653.141 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 49: @@ -40546,9 +40660,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2559.449 0.009 +49: Performance: 2653.141 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 49: @@ -40592,10 +40706,10 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 95.4 49: (ns/day) (hour/ns) -49: Performance: 2528.979 0.009 +49: Performance: 2629.361 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (22 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (46 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: @@ -40634,7 +40748,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 97.3 49: (ns/day) (hour/ns) -49: Performance: 2416.867 0.010 +49: Performance: 2514.528 0.010 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -40670,9 +40784,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.4 +49: Time: 0.001 0.001 97.0 49: (ns/day) (hour/ns) -49: Performance: 2309.934 0.010 +49: Performance: 2378.608 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -40710,9 +40824,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.2 +49: Time: 0.001 0.001 97.5 49: (ns/day) (hour/ns) -49: Performance: 2291.035 0.010 +49: Performance: 2339.762 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -40750,9 +40864,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.5 +49: Time: 0.001 0.001 97.4 49: (ns/day) (hour/ns) -49: Performance: 2248.392 0.011 +49: Performance: 2382.287 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 49: @@ -40790,9 +40904,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.7 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1680.009 0.014 +49: Performance: 2285.087 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 49: @@ -40830,12 +40944,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.3 +49: Time: 0.001 0.001 97.0 49: (ns/day) (hour/ns) -49: Performance: 2153.301 0.011 +49: Performance: 2136.869 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (22 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (54 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: @@ -40872,9 +40986,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.005 0.005 99.3 49: (ns/day) (hour/ns) -49: Performance: 2790.124 0.009 +49: Performance: 309.998 0.077 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -40910,9 +41024,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.2 +49: Time: 0.009 0.009 99.4 49: (ns/day) (hour/ns) -49: Performance: 2574.423 0.009 +49: Performance: 165.208 0.145 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -40950,9 +41064,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2505.325 0.010 +49: Performance: 2721.110 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -40990,9 +41104,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 93.2 +49: Time: 0.001 0.001 95.1 49: (ns/day) (hour/ns) -49: Performance: 2495.178 0.010 +49: Performance: 2700.830 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 49: @@ -41030,9 +41144,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.1 49: (ns/day) (hour/ns) -49: Performance: 2533.139 0.009 +49: Performance: 2680.850 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 49: @@ -41070,12 +41184,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.001 0.001 95.4 49: (ns/day) (hour/ns) -49: Performance: 2530.018 0.009 +49: Performance: 2526.905 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (22 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (46 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: @@ -41112,9 +41226,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 95.8 49: (ns/day) (hour/ns) -49: Performance: 2483.109 0.010 +49: Performance: 2555.203 0.009 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -41150,9 +41264,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.001 0.001 92.3 49: (ns/day) (hour/ns) -49: Performance: 2356.769 0.010 +49: Performance: 2337.099 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -41190,9 +41304,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.3 +49: Time: 0.001 0.001 95.7 49: (ns/day) (hour/ns) -49: Performance: 2341.541 0.010 +49: Performance: 2363.097 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -41230,9 +41344,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.7 +49: Time: 0.001 0.001 96.0 49: (ns/day) (hour/ns) -49: Performance: 1919.786 0.013 +49: Performance: 2393.393 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 49: @@ -41270,9 +41384,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 95.7 49: (ns/day) (hour/ns) -49: Performance: 2355.868 0.010 +49: Performance: 2387.827 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 49: @@ -41310,12 +41424,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 95.9 49: (ns/day) (hour/ns) -49: Performance: 2334.442 0.010 +49: Performance: 2415.919 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (21 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (55 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: @@ -41352,9 +41466,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.2 +49: Time: 0.001 0.001 96.1 49: (ns/day) (hour/ns) -49: Performance: 2146.548 0.011 +49: Performance: 2250.856 0.011 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -41390,9 +41504,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.2 +49: Time: 0.001 0.001 96.0 49: (ns/day) (hour/ns) -49: Performance: 2013.266 0.012 +49: Performance: 2133.170 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -41430,9 +41544,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.001 0.001 96.0 49: (ns/day) (hour/ns) -49: Performance: 2019.205 0.012 +49: Performance: 1981.535 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -41470,9 +41584,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.3 +49: Time: 0.001 0.001 95.6 49: (ns/day) (hour/ns) -49: Performance: 2079.174 0.012 +49: Performance: 1814.074 0.013 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 49: @@ -41510,9 +41624,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.3 +49: Time: 0.005 0.005 99.2 49: (ns/day) (hour/ns) -49: Performance: 2084.098 0.012 +49: Performance: 296.839 0.081 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 49: @@ -41550,13 +41664,13 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.3 +49: Time: 0.009 0.009 99.4 49: (ns/day) (hour/ns) -49: Performance: 2069.397 0.012 +49: Performance: 165.603 0.145 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 (23 ms) -49: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (405 ms total) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 (55 ms) +49: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (942 ms total) 49: 49: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -41609,7 +41723,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 95.1 49: (ns/day) (hour/ns) -49: Performance: 2598.310 0.009 +49: Performance: 2717.509 0.009 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -41657,9 +41771,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.2 +49: Time: 0.001 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2347.787 0.010 +49: Performance: 2596.120 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -41709,9 +41823,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.2 +49: Time: 0.001 0.001 94.8 49: (ns/day) (hour/ns) -49: Performance: 2373.110 0.010 +49: Performance: 2518.640 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -41761,9 +41875,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2269.095 0.011 +49: Performance: 2593.934 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: @@ -41813,9 +41927,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.2 +49: Time: 0.001 0.001 95.4 49: (ns/day) (hour/ns) -49: Performance: 2305.611 0.010 +49: Performance: 2602.701 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: @@ -41865,12 +41979,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.2 +49: Time: 0.001 0.001 95.1 49: (ns/day) (hour/ns) -49: Performance: 2355.868 0.010 +49: Performance: 2550.970 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (1140 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (2569 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -41921,7 +42035,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 95.0 49: (ns/day) (hour/ns) -49: Performance: 2334.442 0.010 +49: Performance: 2650.858 0.009 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -41971,7 +42085,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 94.8 49: (ns/day) (hour/ns) -49: Performance: 2275.801 0.011 +49: Performance: 2543.598 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -42021,9 +42135,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.0 +49: Time: 0.001 0.001 95.1 49: (ns/day) (hour/ns) -49: Performance: 2303.026 0.010 +49: Performance: 2499.227 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -42073,9 +42187,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 94.9 +49: Time: 0.001 0.001 97.4 49: (ns/day) (hour/ns) -49: Performance: 2288.482 0.010 +49: Performance: 1119.091 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: @@ -42125,9 +42239,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.1 +49: Time: 0.001 0.001 95.2 49: (ns/day) (hour/ns) -49: Performance: 2183.833 0.011 +49: Performance: 2487.119 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: @@ -42177,12 +42291,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 94.8 +49: Time: 0.001 0.001 94.9 49: (ns/day) (hour/ns) -49: Performance: 2189.266 0.011 +49: Performance: 2470.166 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (1141 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (1364 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -42227,9 +42341,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 94.9 +49: Time: 0.001 0.001 95.2 49: (ns/day) (hour/ns) -49: Performance: 2444.680 0.010 +49: Performance: 2675.030 0.009 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -42273,9 +42387,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 95.0 49: (ns/day) (hour/ns) -49: Performance: 2285.087 0.011 +49: Performance: 2588.485 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -42321,9 +42435,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2201.785 0.011 +49: Performance: 2544.648 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -42371,7 +42485,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 95.1 49: (ns/day) (hour/ns) -49: Performance: 2364.911 0.010 +49: Performance: 2542.548 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: @@ -42417,9 +42531,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.005 0.005 99.3 49: (ns/day) (hour/ns) -49: Performance: 2342.431 0.010 +49: Performance: 305.494 0.079 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: @@ -42465,12 +42579,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2346.893 0.010 +49: Performance: 2561.577 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (1137 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (1773 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -42515,9 +42629,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 94.8 +49: Time: 0.001 0.001 94.9 49: (ns/day) (hour/ns) -49: Performance: 2377.690 0.010 +49: Performance: 2678.519 0.009 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -42561,9 +42675,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.1 +49: Time: 0.001 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2311.667 0.010 +49: Performance: 2500.241 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -42609,9 +42723,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 94.8 +49: Time: 0.001 0.001 95.1 49: (ns/day) (hour/ns) -49: Performance: 2268.260 0.011 +49: Performance: 2488.123 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -42659,7 +42773,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 95.0 49: (ns/day) (hour/ns) -49: Performance: 2381.366 0.010 +49: Performance: 2501.256 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: @@ -42705,9 +42819,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.1 +49: Time: 0.001 0.001 94.9 49: (ns/day) (hour/ns) -49: Performance: 2353.168 0.010 +49: Performance: 2481.109 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: @@ -42753,12 +42867,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 94.8 +49: Time: 0.001 0.001 95.2 49: (ns/day) (hour/ns) -49: Performance: 2308.203 0.010 +49: Performance: 2481.109 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (1125 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (1632 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -42803,9 +42917,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2322.124 0.010 +49: Performance: 2491.142 0.010 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -42849,9 +42963,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 95.5 49: (ns/day) (hour/ns) -49: Performance: 2127.277 0.011 +49: Performance: 2376.772 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -42897,9 +43011,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 95.9 49: (ns/day) (hour/ns) -49: Performance: 2059.710 0.012 +49: Performance: 2308.203 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -42947,7 +43061,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 95.6 49: (ns/day) (hour/ns) -49: Performance: 2156.316 0.011 +49: Performance: 2347.787 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: @@ -42993,9 +43107,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 95.8 49: (ns/day) (hour/ns) -49: Performance: 2114.862 0.011 +49: Performance: 2328.267 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: @@ -43041,12 +43155,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.8 49: (ns/day) (hour/ns) -49: Performance: 2115.589 0.011 +49: Performance: 2315.142 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (1131 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (2072 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -43091,9 +43205,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 95.4 49: (ns/day) (hour/ns) -49: Performance: 2168.460 0.011 +49: Performance: 2446.622 0.010 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -43139,7 +43253,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 95.4 49: (ns/day) (hour/ns) -49: Performance: 2102.592 0.011 +49: Performance: 1962.598 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -43185,9 +43299,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 95.2 49: (ns/day) (hour/ns) -49: Performance: 2023.848 0.012 +49: Performance: 2303.887 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -43233,9 +43347,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.2 +49: Time: 0.001 0.001 95.6 49: (ns/day) (hour/ns) -49: Performance: 2117.043 0.011 +49: Performance: 2254.976 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: @@ -43281,9 +43395,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.001 0.001 95.4 49: (ns/day) (hour/ns) -49: Performance: 2084.803 0.012 +49: Performance: 2258.282 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: @@ -43331,10 +43445,10 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 95.6 49: (ns/day) (hour/ns) -49: Performance: 2116.315 0.011 +49: Performance: 2276.642 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (1137 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (2171 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -43383,9 +43497,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.1 +49: Time: 0.001 0.001 97.5 49: (ns/day) (hour/ns) -49: Performance: 1897.903 0.013 +49: Performance: 2204.937 0.011 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -43433,9 +43547,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.5 +49: Time: 0.001 0.001 98.4 49: (ns/day) (hour/ns) -49: Performance: 1825.902 0.013 +49: Performance: 984.435 0.024 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -43485,9 +43599,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.4 +49: Time: 0.001 0.001 97.6 49: (ns/day) (hour/ns) -49: Performance: 1872.521 0.013 +49: Performance: 2069.397 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -43537,9 +43651,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.6 +49: Time: 0.001 0.001 97.7 49: (ns/day) (hour/ns) -49: Performance: 1822.661 0.013 +49: Performance: 2021.856 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: @@ -43589,9 +43703,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.3 +49: Time: 0.001 0.001 97.7 49: (ns/day) (hour/ns) -49: Performance: 1853.925 0.013 +49: Performance: 2009.326 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: @@ -43641,12 +43755,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.3 +49: Time: 0.001 0.001 97.4 49: (ns/day) (hour/ns) -49: Performance: 1863.458 0.013 +49: Performance: 2034.542 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (1121 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (1428 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -43691,9 +43805,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.1 +49: Time: 0.001 0.001 97.4 49: (ns/day) (hour/ns) -49: Performance: 1925.186 0.012 +49: Performance: 2102.592 0.011 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -43737,9 +43851,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.0 +49: Time: 0.001 0.001 97.5 49: (ns/day) (hour/ns) -49: Performance: 1779.490 0.013 +49: Performance: 2004.097 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -43785,9 +43899,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.0 +49: Time: 0.001 0.001 97.4 49: (ns/day) (hour/ns) -49: Performance: 1801.343 0.013 +49: Performance: 2018.543 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -43833,9 +43947,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.4 +49: Time: 0.001 0.001 97.3 49: (ns/day) (hour/ns) -49: Performance: 1821.583 0.013 +49: Performance: 1913.822 0.013 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: @@ -43881,9 +43995,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.2 +49: Time: 0.001 0.001 97.5 49: (ns/day) (hour/ns) -49: Performance: 1872.521 0.013 +49: Performance: 1996.951 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: @@ -43929,18 +44043,18 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.5 +49: Time: 0.001 0.001 97.4 49: (ns/day) (hour/ns) -49: Performance: 1867.979 0.013 +49: Performance: 1917.396 0.013 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (1121 ms) -49: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (9053 ms total) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (1439 ms) +49: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (14448 ms total) 49: 49: [----------] Global test environment tear-down -49: [==========] 27 tests from 3 test cases ran. (9526 ms total) +49: [==========] 27 tests from 3 test cases ran. (15467 ms total) 49: [ PASSED ] 27 tests. -49/54 Test #49: MdrunMpiCoordinationTestsOneRank .... Passed 9.55 sec +49/54 Test #49: MdrunMpiCoordinationTestsOneRank .... Passed 15.48 sec test 50 Start 50: MdrunMpiCoordinationTestsTwoRanks @@ -43994,17 +44108,17 @@ 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. 50: Average load imbalance: 1.5%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. 50: Part of the total run time spent waiting due to load imbalance: 0.7%. 50: 50: -50: NOTE: 39 % of the run time was spent communicating energies, +50: NOTE: 40 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.006 0.003 195.0 +50: Time: 0.003 0.001 194.6 50: (ns/day) (hour/ns) -50: Performance: 457.628 0.052 +50: Performance: 1038.623 0.023 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -44047,20 +44161,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 10.9%. -50: The balanceable part of the MD step is 44%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 4.7%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 1.8%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.0 +50: Time: 0.001 0.001 191.2 50: (ns/day) (hour/ns) -50: Performance: 849.327 0.028 +50: Performance: 2033.535 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -44106,18 +44219,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.6%. -50: The balanceable part of the MD step is 51%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: Average load imbalance: 1.4%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.6%. 50: 50: -50: NOTE: 27 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.6 +50: Time: 0.001 0.001 190.5 50: (ns/day) (hour/ns) -50: Performance: 915.325 0.026 +50: Performance: 2256.628 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -44163,24 +44276,28 @@ 50: 50: Dynamic load balancing report: 50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 11.2%. -50: The balanceable part of the MD step is 46%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 5.1%. +50: Average load imbalance: 37.4%. +50: The balanceable part of the MD step is 34%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 12.7%. 50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: -50: NOTE: 5.1 % of the available CPU time was lost due to load imbalance +50: NOTE: 12.7 % of the available CPU time was lost due to load imbalance 50: in the domain decomposition. 50: You can consider manually changing the decomposition (option -dd); 50: e.g. by using fewer domains along the box dimension in which there is 50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 19 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) +50: +50: NOTE: 16 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.6 +50: Time: 0.976 0.504 193.7 50: (ns/day) (hour/ns) -50: Performance: 886.799 0.027 +50: Performance: 2.915 8.233 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: @@ -44225,23 +44342,29 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.7%. -50: The balanceable part of the MD step is 45%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.2%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 38.7%. +50: The balanceable part of the MD step is 35%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 13.7%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: +50: NOTE: 13.7 % of the available CPU time was lost due to load imbalance +50: in the domain decomposition. +50: You can consider manually changing the decomposition (option -dd); +50: e.g. by using fewer domains along the box dimension in which there is +50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 11 % of the run time was spent in domain decomposition, -50: 4 % of the run time was spent in pair search, +50: NOTE: 18 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, 50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 26 % of the run time was spent communicating energies, +50: NOTE: 16 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 189.6 +50: Time: 1.208 0.634 190.6 50: (ns/day) (hour/ns) -50: Performance: 1089.696 0.022 +50: Performance: 2.317 10.357 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: @@ -44287,23 +44410,32 @@ 50: 50: Dynamic load balancing report: 50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 9.6%. -50: The balanceable part of the MD step is 48%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 4.6%. +50: Average load imbalance: 41.0%. +50: The balanceable part of the MD step is 27%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 10.9%. 50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: +50: NOTE: 10.9 % of the available CPU time was lost due to load imbalance +50: in the domain decomposition. +50: You can consider manually changing the decomposition (option -dd); +50: e.g. by using fewer domains along the box dimension in which there is +50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 26 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) +50: +50: NOTE: 13 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.7 +50: Time: 0.510 0.255 200.0 50: (ns/day) (hour/ns) -50: Performance: 1064.557 0.023 +50: Performance: 5.763 4.165 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file -50: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (76 ms) -50: [----------] 1 test from BasicPropagators/PeriodicActionsTest (76 ms total) +50: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (3739 ms) +50: [----------] 1 test from BasicPropagators/PeriodicActionsTest (3739 ms total) 50: 50: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -44350,19 +44482,28 @@ 50: 50: Dynamic load balancing report: 50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 8.1%. -50: The balanceable part of the MD step is 48%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 3.9%. +50: Average load imbalance: 37.5%. +50: The balanceable part of the MD step is 36%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 13.5%. 50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: +50: NOTE: 13.5 % of the available CPU time was lost due to load imbalance +50: in the domain decomposition. +50: You can consider manually changing the decomposition (option -dd); +50: e.g. by using fewer domains along the box dimension in which there is +50: considerable inhomogeneity in the simulated system. +50: +50: NOTE: 18 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 27 % of the run time was spent communicating energies, +50: NOTE: 16 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.1 +50: Time: 1.101 0.574 191.9 50: (ns/day) (hour/ns) -50: Performance: 1283.323 0.019 +50: Performance: 2.559 9.378 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -44406,19 +44547,28 @@ 50: 50: Dynamic load balancing report: 50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 9.9%. -50: The balanceable part of the MD step is 48%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 4.7%. +50: Average load imbalance: 31.3%. +50: The balanceable part of the MD step is 35%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 10.9%. 50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: +50: NOTE: 10.9 % of the available CPU time was lost due to load imbalance +50: in the domain decomposition. +50: You can consider manually changing the decomposition (option -dd); +50: e.g. by using fewer domains along the box dimension in which there is +50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 20 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) +50: +50: NOTE: 17 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 193.1 +50: Time: 1.096 0.564 194.3 50: (ns/day) (hour/ns) -50: Performance: 1097.949 0.022 +50: Performance: 2.605 9.213 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -44464,24 +44614,28 @@ 50: 50: Dynamic load balancing report: 50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 12.1%. -50: The balanceable part of the MD step is 46%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 5.6%. +50: Average load imbalance: 40.6%. +50: The balanceable part of the MD step is 31%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 12.8%. 50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: -50: NOTE: 5.6 % of the available CPU time was lost due to load imbalance +50: NOTE: 12.8 % of the available CPU time was lost due to load imbalance 50: in the domain decomposition. 50: You can consider manually changing the decomposition (option -dd); 50: e.g. by using fewer domains along the box dimension in which there is 50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 23 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) +50: +50: NOTE: 15 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.2 +50: Time: 1.128 0.580 194.4 50: (ns/day) (hour/ns) -50: Performance: 1352.787 0.018 +50: Performance: 2.532 9.480 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -44526,25 +44680,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 13.6%. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 1.4%. 50: The balanceable part of the MD step is 46%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 6.3%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: Part of the total run time spent waiting due to load imbalance: 0.6%. 50: -50: NOTE: 6.3 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.2 +50: Time: 0.001 0.001 190.7 50: (ns/day) (hour/ns) -50: Performance: 1393.012 0.017 +50: Performance: 2297.443 0.010 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: @@ -44590,24 +44738,28 @@ 50: 50: Dynamic load balancing report: 50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 14.3%. -50: The balanceable part of the MD step is 46%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 6.6%. +50: Average load imbalance: 41.1%. +50: The balanceable part of the MD step is 32%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 13.3%. 50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: -50: NOTE: 6.6 % of the available CPU time was lost due to load imbalance +50: NOTE: 13.3 % of the available CPU time was lost due to load imbalance 50: in the domain decomposition. 50: You can consider manually changing the decomposition (option -dd); 50: e.g. by using fewer domains along the box dimension in which there is 50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 22 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) +50: +50: NOTE: 16 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.7 +50: Time: 1.165 0.600 194.1 50: (ns/day) (hour/ns) -50: Performance: 1475.238 0.016 +50: Performance: 2.447 9.806 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: @@ -44653,22 +44805,31 @@ 50: 50: Dynamic load balancing report: 50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 8.5%. -50: The balanceable part of the MD step is 32%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.7%. +50: Average load imbalance: 37.4%. +50: The balanceable part of the MD step is 19%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 7.3%. 50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: +50: NOTE: 7.3 % of the available CPU time was lost due to load imbalance +50: in the domain decomposition. +50: You can consider manually changing the decomposition (option -dd); +50: e.g. by using fewer domains along the box dimension in which there is +50: considerable inhomogeneity in the simulated system. +50: +50: NOTE: 25 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 20 % of the run time was spent communicating energies, +50: NOTE: 10 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.5 +50: Time: 0.656 0.328 200.0 50: (ns/day) (hour/ns) -50: Performance: 1216.187 0.020 +50: Performance: 4.481 5.356 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (39 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (6406 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -44713,24 +44874,28 @@ 50: 50: Dynamic load balancing report: 50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 16.4%. -50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 7.7%. +50: Average load imbalance: 37.2%. +50: The balanceable part of the MD step is 33%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 12.4%. 50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: -50: NOTE: 7.7 % of the available CPU time was lost due to load imbalance +50: NOTE: 12.4 % of the available CPU time was lost due to load imbalance 50: in the domain decomposition. 50: You can consider manually changing the decomposition (option -dd); 50: e.g. by using fewer domains along the box dimension in which there is 50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 23 % of the run time was spent communicating energies, +50: NOTE: 20 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) +50: +50: NOTE: 16 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.8 +50: Time: 0.992 0.522 190.1 50: (ns/day) (hour/ns) -50: Performance: 1493.839 0.016 +50: Performance: 2.815 8.527 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -44773,25 +44938,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 12.8%. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 2.1%. 50: The balanceable part of the MD step is 46%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 5.9%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: Part of the total run time spent waiting due to load imbalance: 1.0%. 50: -50: NOTE: 5.9 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 193.2 +50: Time: 0.001 0.001 190.1 50: (ns/day) (hour/ns) -50: Performance: 1235.207 0.019 +50: Performance: 1964.788 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -44836,25 +44995,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 12.0%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 5.8%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 2.1%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.0%. 50: -50: NOTE: 5.8 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.2 +50: Time: 0.001 0.001 190.0 50: (ns/day) (hour/ns) -50: Performance: 1535.925 0.016 +50: Performance: 2158.960 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -44899,25 +45052,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 17.9%. -50: The balanceable part of the MD step is 48%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 8.6%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 2.0%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: -50: NOTE: 8.6 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.6 +50: Time: 0.001 0.001 189.6 50: (ns/day) (hour/ns) -50: Performance: 1555.705 0.015 +50: Performance: 2090.108 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: @@ -44963,24 +45110,28 @@ 50: 50: Dynamic load balancing report: 50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 17.8%. -50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 8.4%. +50: Average load imbalance: 35.2%. +50: The balanceable part of the MD step is 35%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 12.5%. 50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: -50: NOTE: 8.4 % of the available CPU time was lost due to load imbalance +50: NOTE: 12.5 % of the available CPU time was lost due to load imbalance 50: in the domain decomposition. 50: You can consider manually changing the decomposition (option -dd); 50: e.g. by using fewer domains along the box dimension in which there is 50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 22 % of the run time was spent communicating energies, +50: NOTE: 19 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) +50: +50: NOTE: 16 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.3 +50: Time: 0.992 0.512 193.8 50: (ns/day) (hour/ns) -50: Performance: 1650.306 0.015 +50: Performance: 2.869 8.364 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: @@ -45025,28 +45176,22 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 21.3%. -50: The balanceable part of the MD step is 37%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 7.9%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 1.9%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: -50: NOTE: 7.9 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 23 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 193.0 +50: Time: 0.001 0.001 189.6 50: (ns/day) (hour/ns) -50: Performance: 1406.368 0.017 +50: Performance: 2121.417 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (32 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (2973 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -45091,24 +45236,28 @@ 50: 50: Dynamic load balancing report: 50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 17.0%. -50: The balanceable part of the MD step is 44%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 7.5%. +50: Average load imbalance: 33.2%. +50: The balanceable part of the MD step is 37%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 12.2%. 50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: -50: NOTE: 7.5 % of the available CPU time was lost due to load imbalance +50: NOTE: 12.2 % of the available CPU time was lost due to load imbalance 50: in the domain decomposition. 50: You can consider manually changing the decomposition (option -dd); 50: e.g. by using fewer domains along the box dimension in which there is 50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 21 % of the run time was spent communicating energies, +50: NOTE: 18 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) +50: +50: NOTE: 19 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.6 +50: Time: 1.072 0.552 194.2 50: (ns/day) (hour/ns) -50: Performance: 1487.348 0.016 +50: Performance: 2.662 9.015 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -45152,28 +45301,28 @@ 50: 50: Dynamic load balancing report: 50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 18.0%. -50: The balanceable part of the MD step is 44%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 7.9%. +50: Average load imbalance: 37.5%. +50: The balanceable part of the MD step is 33%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 12.5%. 50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: -50: NOTE: 7.9 % of the available CPU time was lost due to load imbalance +50: NOTE: 12.5 % of the available CPU time was lost due to load imbalance 50: in the domain decomposition. 50: You can consider manually changing the decomposition (option -dd); 50: e.g. by using fewer domains along the box dimension in which there is 50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 11 % of the run time was spent in domain decomposition, -50: 4 % of the run time was spent in pair search, +50: NOTE: 20 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, 50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 22 % of the run time was spent communicating energies, +50: NOTE: 17 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.6 +50: Time: 1.064 0.548 194.2 50: (ns/day) (hour/ns) -50: Performance: 1534.777 0.016 +50: Performance: 2.681 8.953 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -45218,25 +45367,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 16.7%. -50: The balanceable part of the MD step is 46%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 7.7%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 2.2%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.0%. 50: -50: NOTE: 7.7 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 22 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.8 +50: Time: 0.001 0.001 189.8 50: (ns/day) (hour/ns) -50: Performance: 1601.194 0.015 +50: Performance: 2118.863 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -45282,24 +45425,28 @@ 50: 50: Dynamic load balancing report: 50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 14.8%. -50: The balanceable part of the MD step is 48%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 7.1%. +50: Average load imbalance: 36.1%. +50: The balanceable part of the MD step is 34%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 12.2%. 50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: -50: NOTE: 7.1 % of the available CPU time was lost due to load imbalance +50: NOTE: 12.2 % of the available CPU time was lost due to load imbalance 50: in the domain decomposition. 50: You can consider manually changing the decomposition (option -dd); 50: e.g. by using fewer domains along the box dimension in which there is 50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 19 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) +50: +50: NOTE: 16 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.4 +50: Time: 1.452 0.750 193.6 50: (ns/day) (hour/ns) -50: Performance: 1589.831 0.015 +50: Performance: 1.959 12.253 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: @@ -45345,24 +45492,28 @@ 50: 50: Dynamic load balancing report: 50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 17.9%. -50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 8.5%. +50: Average load imbalance: 37.4%. +50: The balanceable part of the MD step is 31%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 11.4%. 50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: -50: NOTE: 8.5 % of the available CPU time was lost due to load imbalance +50: NOTE: 11.4 % of the available CPU time was lost due to load imbalance 50: in the domain decomposition. 50: You can consider manually changing the decomposition (option -dd); 50: e.g. by using fewer domains along the box dimension in which there is 50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 22 % of the run time was spent communicating energies, +50: NOTE: 22 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) +50: +50: NOTE: 16 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.1 +50: Time: 1.072 0.562 190.7 50: (ns/day) (hour/ns) -50: Performance: 1669.085 0.014 +50: Performance: 2.613 9.186 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: @@ -45407,28 +45558,22 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 19.5%. -50: The balanceable part of the MD step is 45%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 8.8%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 1.2%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.6%. 50: -50: NOTE: 8.8 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 22 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.6 +50: Time: 0.001 0.001 189.6 50: (ns/day) (hour/ns) -50: Performance: 1527.925 0.016 +50: Performance: 2199.427 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (28 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (5738 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -45466,13 +45611,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 26 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.2 +50: Time: 0.001 0.001 190.0 50: (ns/day) (hour/ns) -50: Performance: 1704.175 0.014 +50: Performance: 2378.608 0.010 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -45509,13 +45654,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.8 +50: Time: 0.001 0.001 189.7 50: (ns/day) (hour/ns) -50: Performance: 1875.942 0.013 +50: Performance: 2443.226 0.010 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -45554,13 +45699,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 191.7 +50: Time: 0.001 0.001 189.6 50: (ns/day) (hour/ns) -50: Performance: 1917.098 0.013 +50: Performance: 2482.609 0.010 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -45599,13 +45744,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.4 +50: Time: 0.001 0.001 189.8 50: (ns/day) (hour/ns) -50: Performance: 1817.821 0.013 +50: Performance: 2376.314 0.010 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: @@ -45644,13 +45789,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 22 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.1 +50: Time: 0.800 0.416 192.3 50: (ns/day) (hour/ns) -50: Performance: 1827.798 0.013 +50: Performance: 3.532 6.795 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: @@ -45689,16 +45834,17 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options +50: NOTE: 42 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.6 +50: Time: 0.142 0.071 199.9 50: (ns/day) (hour/ns) -50: Performance: 1821.852 0.013 +50: Performance: 20.724 1.158 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (28 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (1766 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -45736,13 +45882,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.1 +50: Time: 0.001 0.001 188.1 50: (ns/day) (hour/ns) -50: Performance: 1847.531 0.013 +50: Performance: 2356.318 0.010 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -45779,13 +45925,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.3 +50: Time: 0.001 0.001 188.1 50: (ns/day) (hour/ns) -50: Performance: 1731.720 0.014 +50: Performance: 2321.249 0.010 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -45824,13 +45970,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.4 +50: Time: 0.001 0.001 188.6 50: (ns/day) (hour/ns) -50: Performance: 1710.088 0.014 +50: Performance: 2358.122 0.010 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -45869,13 +46015,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 20 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.4 +50: Time: 0.832 0.432 192.7 50: (ns/day) (hour/ns) -50: Performance: 1783.611 0.013 +50: Performance: 3.402 7.055 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: @@ -45914,13 +46060,17 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 28 % of the run time was spent communicating energies, +50: NOTE: 17 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) +50: +50: NOTE: 19 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.4 +50: Time: 0.334 0.167 199.9 50: (ns/day) (hour/ns) -50: Performance: 1590.241 0.015 +50: Performance: 8.795 2.729 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: @@ -45959,16 +46109,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 23 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.6 +50: Time: 0.001 0.001 188.7 50: (ns/day) (hour/ns) -50: Performance: 1767.999 0.014 +50: Performance: 2290.184 0.010 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (29 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (2767 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -46006,13 +46156,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 188.8 +50: Time: 0.001 0.001 188.9 50: (ns/day) (hour/ns) -50: Performance: 1761.680 0.014 +50: Performance: 2270.350 0.011 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -46049,13 +46199,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 22 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.3 +50: Time: 0.824 0.438 188.1 50: (ns/day) (hour/ns) -50: Performance: 1742.989 0.014 +50: Performance: 3.354 7.155 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -46094,13 +46244,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 183.2 +50: Time: 0.001 0.001 189.1 50: (ns/day) (hour/ns) -50: Performance: 1718.436 0.014 +50: Performance: 2355.868 0.010 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -46139,13 +46289,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.3 +50: Time: 0.001 0.001 188.0 50: (ns/day) (hour/ns) -50: Performance: 1871.668 0.013 +50: Performance: 2338.874 0.010 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: @@ -46184,13 +46334,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 22 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.1 +50: Time: 0.001 0.001 189.4 50: (ns/day) (hour/ns) -50: Performance: 1613.988 0.015 +50: Performance: 2375.398 0.010 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: @@ -46229,16 +46379,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 11 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.9 +50: Time: 0.004 0.002 195.7 50: (ns/day) (hour/ns) -50: Performance: 1764.960 0.014 +50: Performance: 709.991 0.034 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (28 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (2056 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -46280,13 +46430,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 191.9 +50: Time: 0.001 0.001 189.2 50: (ns/day) (hour/ns) -50: Performance: 1905.240 0.013 +50: Performance: 2210.475 0.011 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -46327,13 +46477,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 191.9 +50: Time: 0.001 0.001 189.9 50: (ns/day) (hour/ns) -50: Performance: 1881.959 0.013 +50: Performance: 2295.303 0.010 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -46376,13 +46526,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 20 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.8 +50: Time: 0.880 0.456 193.0 50: (ns/day) (hour/ns) -50: Performance: 1781.806 0.013 +50: Performance: 3.222 7.449 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -46425,13 +46575,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.7 +50: Time: 0.001 0.001 189.1 50: (ns/day) (hour/ns) -50: Performance: 1861.207 0.013 +50: Performance: 2272.024 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: @@ -46474,13 +46624,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 185.1 +50: Time: 0.001 0.001 187.4 50: (ns/day) (hour/ns) -50: Performance: 1672.484 0.014 +50: Performance: 2129.115 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: @@ -46523,16 +46673,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 191.1 +50: Time: 0.001 0.001 189.2 50: (ns/day) (hour/ns) -50: Performance: 1875.371 0.013 +50: Performance: 2299.158 0.010 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (28 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (1812 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -46581,13 +46731,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.0 +50: Time: 0.001 0.001 188.6 50: (ns/day) (hour/ns) -50: Performance: 1775.899 0.014 +50: Performance: 2207.307 0.011 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -46635,13 +46785,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.8 +50: Time: 0.001 0.001 188.8 50: (ns/day) (hour/ns) -50: Performance: 1811.939 0.013 +50: Performance: 2212.857 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -46691,13 +46841,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.0 +50: Time: 0.001 0.001 188.7 50: (ns/day) (hour/ns) -50: Performance: 1736.357 0.014 +50: Performance: 2079.876 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -46747,13 +46897,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.6 +50: Time: 0.001 0.001 188.6 50: (ns/day) (hour/ns) -50: Performance: 1667.053 0.014 +50: Performance: 2312.969 0.010 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: @@ -46803,13 +46953,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.0 +50: Time: 0.001 0.001 189.3 50: (ns/day) (hour/ns) -50: Performance: 1836.790 0.013 +50: Performance: 2120.686 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: @@ -46859,16 +47009,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.4 +50: Time: 0.001 0.001 188.9 50: (ns/day) (hour/ns) -50: Performance: 1695.032 0.014 +50: Performance: 2079.174 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (29 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (1450 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: @@ -46910,13 +47060,17 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 10 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) +50: +50: NOTE: 20 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.0 +50: Time: 0.856 0.444 192.7 50: (ns/day) (hour/ns) -50: Performance: 1844.213 0.013 +50: Performance: 3.308 7.255 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -46957,13 +47111,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 23 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.2 +50: Time: 0.001 0.001 188.6 50: (ns/day) (hour/ns) -50: Performance: 1697.835 0.014 +50: Performance: 2315.577 0.010 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -47006,13 +47160,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 188.9 +50: Time: 0.001 0.001 188.3 50: (ns/day) (hour/ns) -50: Performance: 1725.657 0.014 +50: Performance: 2264.508 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -47055,13 +47209,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.1 +50: Time: 0.001 0.001 188.5 50: (ns/day) (hour/ns) -50: Performance: 1705.355 0.014 +50: Performance: 2221.234 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 50: @@ -47104,13 +47258,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 23 % of the run time was spent communicating energies, +50: NOTE: 21 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.6 +50: Time: 0.752 0.392 191.8 50: (ns/day) (hour/ns) -50: Performance: 1732.938 0.014 +50: Performance: 3.748 6.403 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 50: @@ -47153,16 +47307,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 23 % of the run time was spent communicating energies, +50: NOTE: 21 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.2 +50: Time: 1.032 0.532 194.0 50: (ns/day) (hour/ns) -50: Performance: 1817.821 0.013 +50: Performance: 2.762 8.691 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (28 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (3844 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: @@ -47200,13 +47354,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 21 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.3 +50: Time: 1.319 0.678 194.7 50: (ns/day) (hour/ns) -50: Performance: 1695.732 0.014 +50: Performance: 2.167 11.073 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -47243,13 +47397,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 24 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.4 +50: Time: 0.779 0.422 184.8 50: (ns/day) (hour/ns) -50: Performance: 1870.531 0.013 +50: Performance: 3.483 6.891 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -47288,13 +47442,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 21 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.2 +50: Time: 0.752 0.392 191.8 50: (ns/day) (hour/ns) -50: Performance: 1745.211 0.014 +50: Performance: 3.748 6.403 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -47333,13 +47487,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 21 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.8 +50: Time: 0.752 0.392 191.9 50: (ns/day) (hour/ns) -50: Performance: 1839.532 0.013 +50: Performance: 3.748 6.403 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 50: @@ -47378,13 +47532,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.3 +50: Time: 0.001 0.001 189.7 50: (ns/day) (hour/ns) -50: Performance: 1716.999 0.014 +50: Performance: 2331.792 0.010 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 50: @@ -47423,16 +47577,20 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 15 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) +50: +50: NOTE: 14 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 185.8 +50: Time: 0.366 0.183 200.0 50: (ns/day) (hour/ns) -50: Performance: 1668.407 0.014 +50: Performance: 8.018 2.993 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (29 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (5525 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: @@ -47470,13 +47628,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.8 +50: Time: 0.001 0.001 189.1 50: (ns/day) (hour/ns) -50: Performance: 1834.602 0.013 +50: Performance: 2309.934 0.010 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -47513,13 +47671,14 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 28 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options +50: NOTE: 93 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 184.2 +50: Time: 0.020 0.010 199.2 50: (ns/day) (hour/ns) -50: Performance: 1464.541 0.016 +50: Performance: 148.189 0.162 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -47558,13 +47717,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.6 +50: Time: 0.001 0.001 189.4 50: (ns/day) (hour/ns) -50: Performance: 1800.027 0.013 +50: Performance: 2242.662 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -47603,13 +47762,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.2 +50: Time: 0.001 0.001 189.7 50: (ns/day) (hour/ns) -50: Performance: 1776.155 0.014 +50: Performance: 2416.867 0.010 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 50: @@ -47648,13 +47807,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.5 +50: Time: 0.001 0.001 189.7 50: (ns/day) (hour/ns) -50: Performance: 1738.317 0.014 +50: Performance: 2287.632 0.010 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 50: @@ -47693,16 +47852,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 21 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.3 +50: Time: 0.752 0.392 191.8 50: (ns/day) (hour/ns) -50: Performance: 1747.191 0.014 +50: Performance: 3.748 6.403 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (29 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (1811 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: @@ -47740,13 +47899,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 21 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.6 +50: Time: 0.752 0.392 191.8 50: (ns/day) (hour/ns) -50: Performance: 1628.494 0.015 +50: Performance: 3.747 6.405 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -47783,13 +47942,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 21 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.4 +50: Time: 0.752 0.392 191.8 50: (ns/day) (hour/ns) -50: Performance: 1826.714 0.013 +50: Performance: 3.747 6.405 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -47828,13 +47987,17 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 21 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) +50: +50: NOTE: 12 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.4 +50: Time: 0.271 0.136 199.9 50: (ns/day) (hour/ns) -50: Performance: 1733.425 0.014 +50: Performance: 10.820 2.218 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -47873,13 +48036,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 21 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.9 +50: Time: 0.752 0.392 191.9 50: (ns/day) (hour/ns) -50: Performance: 1705.119 0.014 +50: Performance: 3.748 6.403 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 50: @@ -47918,13 +48081,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 21 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.4 +50: Time: 0.752 0.392 191.8 50: (ns/day) (hour/ns) -50: Performance: 1739.789 0.014 +50: Performance: 3.748 6.403 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 50: @@ -47963,16 +48126,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 21 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.1 +50: Time: 0.752 0.392 191.8 50: (ns/day) (hour/ns) -50: Performance: 1706.299 0.014 +50: Performance: 3.747 6.405 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 (29 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 (6324 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_input.mdp]: @@ -48016,22 +48179,16 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 14.3%. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 1.2%. 50: The balanceable part of the MD step is 54%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 7.7%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: Part of the total run time spent waiting due to load imbalance: 0.6%. 50: -50: NOTE: 7.7 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.0 +50: Time: 0.002 0.001 189.7 50: (ns/day) (hour/ns) -50: Performance: 1140.217 0.021 +50: Performance: 1575.599 0.015 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -48074,22 +48231,16 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 13.7%. -50: The balanceable part of the MD step is 55%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 7.5%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 1.5%. +50: The balanceable part of the MD step is 54%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.8%. 50: -50: NOTE: 7.5 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 188.8 +50: Time: 0.002 0.001 189.8 50: (ns/day) (hour/ns) -50: Performance: 1118.684 0.021 +50: Performance: 1617.166 0.015 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -48134,22 +48285,16 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 14.2%. -50: The balanceable part of the MD step is 52%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 7.4%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 1.1%. +50: The balanceable part of the MD step is 54%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.6%. 50: -50: NOTE: 7.4 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 191.8 +50: Time: 0.002 0.001 189.7 50: (ns/day) (hour/ns) -50: Performance: 1104.148 0.022 +50: Performance: 1622.917 0.015 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -48194,22 +48339,16 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 12.6%. -50: The balanceable part of the MD step is 53%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 6.7%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 1.8%. +50: The balanceable part of the MD step is 54%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.0%. 50: -50: NOTE: 6.7 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.9 +50: Time: 0.002 0.001 189.4 50: (ns/day) (hour/ns) -50: Performance: 1085.472 0.022 +50: Performance: 1636.932 0.015 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 50: @@ -48254,22 +48393,16 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 12.1%. -50: The balanceable part of the MD step is 52%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 6.2%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 1.1%. +50: The balanceable part of the MD step is 54%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.6%. 50: -50: NOTE: 6.2 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.1 +50: Time: 0.002 0.001 189.5 50: (ns/day) (hour/ns) -50: Performance: 1165.455 0.021 +50: Performance: 1615.258 0.015 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 50: @@ -48314,25 +48447,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 13.1%. -50: The balanceable part of the MD step is 54%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 7.1%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 1.5%. +50: The balanceable part of the MD step is 55%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.8%. 50: -50: NOTE: 7.1 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.0 +50: Time: 0.002 0.001 189.6 50: (ns/day) (hour/ns) -50: Performance: 1141.802 0.021 +50: Performance: 1617.166 0.015 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 (31 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 (270 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_input.mdp]: @@ -48376,25 +48503,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 11.4%. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 0.8%. 50: The balanceable part of the MD step is 50%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 5.8%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: Part of the total run time spent waiting due to load imbalance: 0.4%. 50: -50: NOTE: 5.8 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.5 +50: Time: 0.001 0.001 190.3 50: (ns/day) (hour/ns) -50: Performance: 1375.747 0.017 +50: Performance: 2001.818 0.012 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -48437,25 +48558,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 11.2%. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 1.4%. 50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 5.5%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: Part of the total run time spent waiting due to load imbalance: 0.7%. 50: -50: NOTE: 5.5 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.3 +50: Time: 0.001 0.001 190.5 50: (ns/day) (hour/ns) -50: Performance: 1475.238 0.016 +50: Performance: 1941.262 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -48500,25 +48615,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 10.9%. -50: The balanceable part of the MD step is 51%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 5.5%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 0.9%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.5%. 50: -50: NOTE: 5.5 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.9 +50: Time: 0.001 0.001 190.1 50: (ns/day) (hour/ns) -50: Performance: 1461.415 0.016 +50: Performance: 1935.468 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -48563,25 +48672,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 13.2%. -50: The balanceable part of the MD step is 51%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 6.7%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 1.5%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.8%. 50: -50: NOTE: 6.7 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 26 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.9 +50: Time: 0.001 0.001 190.0 50: (ns/day) (hour/ns) -50: Performance: 1358.755 0.018 +50: Performance: 1905.240 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 50: @@ -48626,25 +48729,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 13.5%. -50: The balanceable part of the MD step is 52%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 7.1%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 1.8%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: -50: NOTE: 7.1 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 22 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.1 +50: Time: 0.001 0.001 190.6 50: (ns/day) (hour/ns) -50: Performance: 1264.619 0.019 +50: Performance: 1902.592 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 50: @@ -48689,28 +48786,22 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 13.3%. -50: The balanceable part of the MD step is 52%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 6.9%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 2.2%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.1%. 50: -50: NOTE: 6.9 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 26 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.0 +50: Time: 0.001 0.001 189.7 50: (ns/day) (hour/ns) -50: Performance: 1432.530 0.017 +50: Performance: 1914.417 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (30 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (308 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: @@ -48749,9 +48840,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.2 +50: Time: 0.002 0.001 188.8 50: (ns/day) (hour/ns) -50: Performance: 1182.229 0.020 +50: Performance: 1628.925 0.015 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -48789,9 +48880,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.2 +50: Time: 0.002 0.001 188.4 50: (ns/day) (hour/ns) -50: Performance: 1184.730 0.020 +50: Performance: 1660.314 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -48831,9 +48922,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.9 +50: Time: 0.002 0.001 189.0 50: (ns/day) (hour/ns) -50: Performance: 1216.187 0.020 +50: Performance: 1664.126 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -48873,9 +48964,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.3 +50: Time: 0.002 0.001 188.9 50: (ns/day) (hour/ns) -50: Performance: 1239.556 0.019 +50: Performance: 1612.299 0.015 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 50: @@ -48915,9 +49006,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.9 +50: Time: 0.002 0.001 188.7 50: (ns/day) (hour/ns) -50: Performance: 1238.559 0.019 +50: Performance: 1657.187 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 50: @@ -48957,12 +49048,12 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.7 +50: Time: 0.002 0.001 188.5 50: (ns/day) (hour/ns) -50: Performance: 1202.889 0.020 +50: Performance: 1656.742 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (30 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (275 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: @@ -49000,13 +49091,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 27 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.9 +50: Time: 0.001 0.001 189.5 50: (ns/day) (hour/ns) -50: Performance: 1534.203 0.016 +50: Performance: 2107.627 0.011 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -49043,13 +49134,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 27 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.8 +50: Time: 0.001 0.001 189.0 50: (ns/day) (hour/ns) -50: Performance: 1517.761 0.016 +50: Performance: 2074.274 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -49088,13 +49179,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 27 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.1 +50: Time: 0.001 0.001 189.4 50: (ns/day) (hour/ns) -50: Performance: 1543.815 0.016 +50: Performance: 2036.223 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -49133,13 +49224,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.5 +50: Time: 0.001 0.001 189.3 50: (ns/day) (hour/ns) -50: Performance: 1357.407 0.018 +50: Performance: 2091.172 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 50: @@ -49178,13 +49269,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 27 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.2 +50: Time: 0.001 0.001 189.0 50: (ns/day) (hour/ns) -50: Performance: 1583.090 0.015 +50: Performance: 2081.633 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 50: @@ -49223,16 +49314,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 186.8 +50: Time: 0.001 0.001 189.5 50: (ns/day) (hour/ns) -50: Performance: 2008.016 0.012 +50: Performance: 2095.796 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (30 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (192 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: @@ -49270,13 +49361,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 26 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.9 +50: Time: 0.001 0.001 190.9 50: (ns/day) (hour/ns) -50: Performance: 1335.920 0.018 +50: Performance: 1896.735 0.013 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -49313,13 +49404,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 27 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.9 +50: Time: 0.001 0.001 190.3 50: (ns/day) (hour/ns) -50: Performance: 1222.825 0.020 +50: Performance: 1897.903 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -49358,13 +49449,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.3 +50: Time: 0.001 0.001 190.4 50: (ns/day) (hour/ns) -50: Performance: 1347.904 0.018 +50: Performance: 1900.245 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -49403,13 +49494,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 27 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.3 +50: Time: 0.001 0.001 191.0 50: (ns/day) (hour/ns) -50: Performance: 1253.682 0.019 +50: Performance: 1902.886 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 50: @@ -49448,13 +49539,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.3 +50: Time: 0.001 0.001 191.1 50: (ns/day) (hour/ns) -50: Performance: 1359.204 0.018 +50: Performance: 1914.714 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 50: @@ -49493,16 +49584,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 24 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.1 +50: Time: 0.001 0.001 190.8 50: (ns/day) (hour/ns) -50: Performance: 1213.791 0.020 +50: Performance: 1917.695 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (31 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (220 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: @@ -49544,9 +49635,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 193.6 +50: Time: 0.002 0.001 190.8 50: (ns/day) (hour/ns) -50: Performance: 1169.659 0.021 +50: Performance: 1719.155 0.014 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -49583,13 +49674,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 27 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 193.9 +50: Time: 0.002 0.001 190.8 50: (ns/day) (hour/ns) -50: Performance: 1131.214 0.021 +50: Performance: 1704.883 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -49628,13 +49719,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 26 % of the run time was spent communicating energies, +50: NOTE: 27 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 193.9 +50: Time: 0.002 0.001 190.8 50: (ns/day) (hour/ns) -50: Performance: 1132.983 0.021 +50: Performance: 1717.239 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -49673,13 +49764,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 27 % of the run time was spent communicating energies, +50: NOTE: 26 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 194.3 +50: Time: 0.002 0.001 190.9 50: (ns/day) (hour/ns) -50: Performance: 1079.102 0.022 +50: Performance: 1723.002 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 50: @@ -49718,13 +49809,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 26 % of the run time was spent communicating energies, +50: NOTE: 27 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 193.0 +50: Time: 0.002 0.001 191.2 50: (ns/day) (hour/ns) -50: Performance: 1103.061 0.022 +50: Performance: 1712.227 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 50: @@ -49763,17 +49854,17 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 25 % of the run time was spent communicating energies, +50: NOTE: 27 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 194.2 +50: Time: 0.002 0.001 191.6 50: (ns/day) (hour/ns) -50: Performance: 1152.806 0.021 +50: Performance: 1690.381 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 (33 ms) -50: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (541 ms total) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 (208 ms) +50: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (43945 ms total) 50: 50: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -49827,29 +49918,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 22.5%. -50: The balanceable part of the MD step is 46%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 10.4%. -50: -50: NOTE: 10.4 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You might want to use dynamic load balancing (option -dlb.) -50: You can also consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 2.8%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.3%. 50: -50: NOTE: 10 % of the run time was spent in domain decomposition, -50: 6 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 19 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.0 +50: Time: 0.001 0.001 190.2 50: (ns/day) (hour/ns) -50: Performance: 1384.092 0.017 +50: Performance: 2014.253 0.012 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -49900,29 +49981,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 26.0%. -50: The balanceable part of the MD step is 45%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 11.8%. -50: -50: NOTE: 11.8 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You might want to use dynamic load balancing (option -dlb.) -50: You can also consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 3.3%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.6%. 50: -50: NOTE: 10 % of the run time was spent in domain decomposition, -50: 6 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 19 % of the run time was spent communicating energies, +50: NOTE: 27 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 193.5 +50: Time: 0.001 0.001 189.5 50: (ns/day) (hour/ns) -50: Performance: 1349.528 0.018 +50: Performance: 2014.912 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -49975,29 +50046,16 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 22.8%. -50: The balanceable part of the MD step is 46%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 10.5%. -50: -50: NOTE: 10.5 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You might want to use dynamic load balancing (option -dlb.) -50: You can also consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. -50: -50: NOTE: 10 % of the run time was spent in domain decomposition, -50: 6 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 12.6%. +50: The balanceable part of the MD step is 1%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.2%. 50: -50: NOTE: 19 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.5 +50: Time: 0.031 0.016 199.5 50: (ns/day) (hour/ns) -50: Performance: 1374.672 0.017 +50: Performance: 94.004 0.255 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -50050,29 +50108,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 21.9%. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 3.7%. 50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 10.4%. -50: -50: NOTE: 10.4 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You might want to use dynamic load balancing (option -dlb.) -50: You can also consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. +50: Part of the total run time spent waiting due to load imbalance: 1.7%. 50: -50: NOTE: 10 % of the run time was spent in domain decomposition, -50: 6 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 20 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.9 +50: Time: 0.001 0.001 189.8 50: (ns/day) (hour/ns) -50: Performance: 1378.055 0.017 +50: Performance: 2010.638 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: @@ -50125,29 +50173,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 21.6%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 10.5%. -50: -50: NOTE: 10.5 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You might want to use dynamic load balancing (option -dlb.) -50: You can also consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 2.8%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.3%. 50: -50: NOTE: 10 % of the run time was spent in domain decomposition, -50: 6 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 19 % of the run time was spent communicating energies, +50: NOTE: 27 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.9 +50: Time: 0.001 0.001 189.3 50: (ns/day) (hour/ns) -50: Performance: 1383.315 0.017 +50: Performance: 2019.205 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: @@ -50200,32 +50238,22 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 22.5%. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 3.0%. 50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 10.6%. -50: -50: NOTE: 10.6 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You might want to use dynamic load balancing (option -dlb.) -50: You can also consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. +50: Part of the total run time spent waiting due to load imbalance: 1.4%. 50: -50: NOTE: 11 % of the run time was spent in domain decomposition, -50: 6 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 19 % of the run time was spent communicating energies, +50: NOTE: 27 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.7 +50: Time: 0.001 0.001 189.6 50: (ns/day) (hour/ns) -50: Performance: 1287.480 0.019 +50: Performance: 2046.029 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (1147 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (2101 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -50277,29 +50305,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 21.8%. -50: The balanceable part of the MD step is 46%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 10.1%. -50: -50: NOTE: 10.1 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You might want to use dynamic load balancing (option -dlb.) -50: You can also consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 2.3%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.1%. 50: -50: NOTE: 12 % of the run time was spent in domain decomposition, -50: 6 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 19 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.5 +50: Time: 0.001 0.001 189.7 50: (ns/day) (hour/ns) -50: Performance: 1315.523 0.018 +50: Performance: 1864.304 0.013 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -50350,25 +50368,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 22.3%. -50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 10.5%. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 3.2%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.6%. 50: -50: NOTE: 10.5 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You might want to use dynamic load balancing (option -dlb.) -50: You can also consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 20 % of the run time was spent communicating energies, +50: NOTE: 27 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.7 +50: Time: 0.001 0.001 188.9 50: (ns/day) (hour/ns) -50: Performance: 1359.804 0.018 +50: Performance: 2055.930 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -50421,25 +50433,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 21.7%. -50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 10.2%. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 3.3%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.6%. 50: -50: NOTE: 10.2 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You might want to use dynamic load balancing (option -dlb.) -50: You can also consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 20 % of the run time was spent communicating energies, +50: NOTE: 27 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.3 +50: Time: 0.001 0.001 188.9 50: (ns/day) (hour/ns) -50: Performance: 1336.644 0.018 +50: Performance: 2042.637 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -50492,29 +50498,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 19.3%. -50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 9.0%. -50: -50: NOTE: 9.0 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You might want to use dynamic load balancing (option -dlb.) -50: You can also consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 3.8%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.8%. 50: -50: NOTE: 10 % of the run time was spent in domain decomposition, -50: 5 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 18 % of the run time was spent communicating energies, +50: NOTE: 27 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.7 +50: Time: 0.001 0.001 189.1 50: (ns/day) (hour/ns) -50: Performance: 1247.084 0.019 +50: Performance: 2027.512 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: @@ -50567,29 +50563,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 22.6%. -50: The balanceable part of the MD step is 46%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 10.4%. -50: -50: NOTE: 10.4 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You might want to use dynamic load balancing (option -dlb.) -50: You can also consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 3.6%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.7%. 50: -50: NOTE: 10 % of the run time was spent in domain decomposition, -50: 6 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 20 % of the run time was spent communicating energies, +50: NOTE: 27 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.1 +50: Time: 0.001 0.001 188.9 50: (ns/day) (hour/ns) -50: Performance: 1350.711 0.018 +50: Performance: 1996.627 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: @@ -50642,32 +50628,22 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 22.0%. -50: The balanceable part of the MD step is 45%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 10.0%. -50: -50: NOTE: 10.0 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You might want to use dynamic load balancing (option -dlb.) -50: You can also consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 2.8%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.3%. 50: -50: NOTE: 13 % of the run time was spent in domain decomposition, -50: 6 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 19 % of the run time was spent communicating energies, +50: NOTE: 27 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.3 +50: Time: 0.001 0.001 189.0 50: (ns/day) (hour/ns) -50: Performance: 1351.452 0.018 +50: Performance: 2051.480 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (1136 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (2148 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -50713,13 +50689,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 8 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 186.8 +50: Time: 0.002 0.001 189.7 50: (ns/day) (hour/ns) -50: Performance: 1286.136 0.019 +50: Performance: 1846.424 0.013 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -50764,13 +50737,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 8 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.7 +50: Time: 0.001 0.001 189.6 50: (ns/day) (hour/ns) -50: Performance: 1338.241 0.018 +50: Performance: 1979.943 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -50817,13 +50787,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 7 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.5 +50: Time: 0.001 0.001 189.4 50: (ns/day) (hour/ns) -50: Performance: 1328.144 0.018 +50: Performance: 1948.014 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -50870,13 +50837,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 8 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.1 +50: Time: 0.001 0.001 189.2 50: (ns/day) (hour/ns) -50: Performance: 1294.650 0.019 +50: Performance: 2062.469 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: @@ -50923,13 +50887,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 7 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.6 +50: Time: 0.001 0.001 188.9 50: (ns/day) (hour/ns) -50: Performance: 1193.914 0.020 +50: Performance: 2022.187 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: @@ -50976,16 +50937,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 7 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.5 +50: Time: 0.001 0.001 189.4 50: (ns/day) (hour/ns) -50: Performance: 1327.571 0.018 +50: Performance: 2022.187 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (1138 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (2772 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -51031,13 +50989,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 8 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.2 +50: Time: 0.001 0.001 189.0 50: (ns/day) (hour/ns) -50: Performance: 1373.753 0.017 +50: Performance: 1958.853 0.012 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -51082,13 +51037,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 8 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 188.4 +50: Time: 0.001 0.001 189.0 50: (ns/day) (hour/ns) -50: Performance: 1259.449 0.019 +50: Performance: 1978.036 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -51135,13 +51087,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 9 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.4 +50: Time: 0.001 0.001 188.9 50: (ns/day) (hour/ns) -50: Performance: 1248.600 0.019 +50: Performance: 1929.104 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -51188,13 +51137,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 8 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.3 +50: Time: 0.001 0.001 188.6 50: (ns/day) (hour/ns) -50: Performance: 1327.714 0.018 +50: Performance: 1941.568 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: @@ -51241,13 +51187,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 8 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.9 +50: Time: 0.001 0.001 189.0 50: (ns/day) (hour/ns) -50: Performance: 1308.259 0.018 +50: Performance: 1932.432 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: @@ -51294,16 +51237,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 7 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.8 +50: Time: 0.001 0.001 188.3 50: (ns/day) (hour/ns) -50: Performance: 1294.922 0.019 +50: Performance: 1947.706 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (1138 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (2568 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -51349,13 +51289,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 7 % of the run time was spent communicating energies, +50: NOTE: 27 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 188.0 +50: Time: 2.016 1.024 196.9 50: (ns/day) (hour/ns) -50: Performance: 1225.623 0.020 +50: Performance: 1.435 16.730 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -51400,13 +51340,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 7 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.0 +50: Time: 0.002 0.001 190.6 50: (ns/day) (hour/ns) -50: Performance: 1222.219 0.020 +50: Performance: 1829.698 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -51453,13 +51390,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 6 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.0 +50: Time: 0.001 0.001 190.1 50: (ns/day) (hour/ns) -50: Performance: 1176.022 0.020 +50: Performance: 1879.662 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -51506,13 +51440,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 7 % of the run time was spent communicating energies, +50: NOTE: 27 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 193.1 +50: Time: 2.528 1.290 196.0 50: (ns/day) (hour/ns) -50: Performance: 1257.521 0.019 +50: Performance: 1.139 21.078 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: @@ -51559,13 +51493,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 7 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 192.2 +50: Time: 0.001 0.001 190.1 50: (ns/day) (hour/ns) -50: Performance: 1177.596 0.020 +50: Performance: 1863.740 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: @@ -51612,16 +51543,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 7 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 193.1 +50: Time: 0.002 0.001 190.6 50: (ns/day) (hour/ns) -50: Performance: 1251.772 0.019 +50: Performance: 1861.207 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (1138 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (5698 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -51667,13 +51595,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 7 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 193.3 +50: Time: 0.033 0.017 199.1 50: (ns/day) (hour/ns) -50: Performance: 1166.669 0.021 +50: Performance: 88.457 0.271 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -51718,13 +51643,17 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 7 % of the run time was spent communicating energies, +50: NOTE: 43 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) +50: +50: NOTE: 11 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.5 +50: Time: 0.581 0.291 200.0 50: (ns/day) (hour/ns) -50: Performance: 1229.169 0.020 +50: Performance: 5.053 4.750 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -51771,13 +51700,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 6 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.4 +50: Time: 0.002 0.001 190.2 50: (ns/day) (hour/ns) -50: Performance: 1163.254 0.021 +50: Performance: 1811.673 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -51824,13 +51750,14 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 7 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options +50: NOTE: 12 % of the run time was spent in domain decomposition, +50: 2 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.5 +50: Time: 0.002 0.001 192.4 50: (ns/day) (hour/ns) -50: Performance: 1166.227 0.021 +50: Performance: 1390.810 0.017 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: @@ -51877,13 +51804,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 7 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.1 +50: Time: 0.002 0.001 190.9 50: (ns/day) (hour/ns) -50: Performance: 1170.103 0.021 +50: Performance: 1689.454 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: @@ -51934,12 +51858,12 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.4 +50: Time: 0.002 0.001 192.8 50: (ns/day) (hour/ns) -50: Performance: 1216.067 0.020 +50: Performance: 1228.311 0.020 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (1139 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (2342 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -51992,11 +51916,11 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 14.3%. -50: The balanceable part of the MD step is 53%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 7.6%. +50: Average load imbalance: 16.9%. +50: The balanceable part of the MD step is 55%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 9.3%. 50: -50: NOTE: 7.6 % of the available CPU time was lost due to load imbalance +50: NOTE: 9.3 % of the available CPU time was lost due to load imbalance 50: in the domain decomposition. 50: You might want to use dynamic load balancing (option -dlb.) 50: You can also consider manually changing the decomposition (option -dd); @@ -52004,9 +51928,9 @@ 50: considerable inhomogeneity in the simulated system. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.8 +50: Time: 0.003 0.002 192.6 50: (ns/day) (hour/ns) -50: Performance: 1004.499 0.024 +50: Performance: 903.644 0.027 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -52058,11 +51982,11 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 20.1%. -50: The balanceable part of the MD step is 55%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 11.0%. +50: Average load imbalance: 15.8%. +50: The balanceable part of the MD step is 56%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 8.8%. 50: -50: NOTE: 11.0 % of the available CPU time was lost due to load imbalance +50: NOTE: 8.8 % of the available CPU time was lost due to load imbalance 50: in the domain decomposition. 50: You might want to use dynamic load balancing (option -dlb.) 50: You can also consider manually changing the decomposition (option -dd); @@ -52070,9 +51994,9 @@ 50: considerable inhomogeneity in the simulated system. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.4 +50: Time: 0.003 0.002 191.9 50: (ns/day) (hour/ns) -50: Performance: 951.737 0.025 +50: Performance: 950.489 0.025 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -52126,11 +52050,11 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 18.5%. -50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 10.4%. +50: Average load imbalance: 17.3%. +50: The balanceable part of the MD step is 56%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 9.7%. 50: -50: NOTE: 10.4 % of the available CPU time was lost due to load imbalance +50: NOTE: 9.7 % of the available CPU time was lost due to load imbalance 50: in the domain decomposition. 50: You might want to use dynamic load balancing (option -dlb.) 50: You can also consider manually changing the decomposition (option -dd); @@ -52138,9 +52062,9 @@ 50: considerable inhomogeneity in the simulated system. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.2 +50: Time: 0.003 0.002 192.2 50: (ns/day) (hour/ns) -50: Performance: 976.632 0.025 +50: Performance: 919.080 0.026 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -52194,11 +52118,11 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 16.3%. -50: The balanceable part of the MD step is 53%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 8.6%. +50: Average load imbalance: 17.4%. +50: The balanceable part of the MD step is 55%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 9.6%. 50: -50: NOTE: 8.6 % of the available CPU time was lost due to load imbalance +50: NOTE: 9.6 % of the available CPU time was lost due to load imbalance 50: in the domain decomposition. 50: You might want to use dynamic load balancing (option -dlb.) 50: You can also consider manually changing the decomposition (option -dd); @@ -52206,9 +52130,9 @@ 50: considerable inhomogeneity in the simulated system. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.5 +50: Time: 0.003 0.002 191.4 50: (ns/day) (hour/ns) -50: Performance: 955.279 0.025 +50: Performance: 918.669 0.026 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: @@ -52262,11 +52186,11 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 16.9%. -50: The balanceable part of the MD step is 52%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 8.9%. +50: Average load imbalance: 16.5%. +50: The balanceable part of the MD step is 55%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 9.0%. 50: -50: NOTE: 8.9 % of the available CPU time was lost due to load imbalance +50: NOTE: 9.0 % of the available CPU time was lost due to load imbalance 50: in the domain decomposition. 50: You might want to use dynamic load balancing (option -dlb.) 50: You can also consider manually changing the decomposition (option -dd); @@ -52274,9 +52198,9 @@ 50: considerable inhomogeneity in the simulated system. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.8 +50: Time: 0.003 0.002 192.4 50: (ns/day) (hour/ns) -50: Performance: 943.140 0.025 +50: Performance: 975.086 0.025 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: @@ -52330,11 +52254,11 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 19.6%. +50: Average load imbalance: 16.6%. 50: The balanceable part of the MD step is 54%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 10.6%. +50: Part of the total run time spent waiting due to load imbalance: 9.0%. 50: -50: NOTE: 10.6 % of the available CPU time was lost due to load imbalance +50: NOTE: 9.0 % of the available CPU time was lost due to load imbalance 50: in the domain decomposition. 50: You might want to use dynamic load balancing (option -dlb.) 50: You can also consider manually changing the decomposition (option -dd); @@ -52342,12 +52266,12 @@ 50: considerable inhomogeneity in the simulated system. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.3 +50: Time: 0.003 0.002 192.0 50: (ns/day) (hour/ns) -50: Performance: 938.543 0.026 +50: Performance: 947.784 0.025 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (1142 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (1146 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -52393,13 +52317,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 9 % of the run time was spent communicating energies, +50: NOTE: 8 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.0 +50: Time: 0.003 0.002 191.7 50: (ns/day) (hour/ns) -50: Performance: 873.348 0.027 +50: Performance: 866.469 0.028 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -52448,9 +52372,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.7 +50: Time: 0.003 0.002 191.5 50: (ns/day) (hour/ns) -50: Performance: 847.808 0.028 +50: Performance: 889.681 0.027 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -52501,9 +52425,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.7 +50: Time: 0.003 0.002 191.3 50: (ns/day) (hour/ns) -50: Performance: 895.696 0.027 +50: Performance: 908.374 0.026 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -52554,9 +52478,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.8 +50: Time: 0.003 0.002 191.3 50: (ns/day) (hour/ns) -50: Performance: 910.724 0.026 +50: Performance: 894.915 0.027 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: @@ -52607,9 +52531,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.0 +50: Time: 0.003 0.002 191.1 50: (ns/day) (hour/ns) -50: Performance: 930.885 0.026 +50: Performance: 884.825 0.027 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: @@ -52660,18 +52584,18 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.1 +50: Time: 0.003 0.002 191.9 50: (ns/day) (hour/ns) -50: Performance: 876.703 0.027 +50: Performance: 843.570 0.028 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (1141 ms) -50: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (9119 ms total) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (1149 ms) +50: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (19924 ms total) 50: 50: [----------] Global test environment tear-down -50: [==========] 27 tests from 3 test cases ran. (9736 ms total) +50: [==========] 27 tests from 3 test cases ran. (67608 ms total) 50: [ PASSED ] 27 tests. -50/54 Test #50: MdrunMpiCoordinationTestsTwoRanks ... Passed 9.76 sec +50/54 Test #50: MdrunMpiCoordinationTestsTwoRanks ... Passed 67.62 sec test 51 Start 51: GmxapiExternalInterfaceTests @@ -52681,7 +52605,7 @@ 51: [----------] Global test environment set-up. 51: [----------] 8 tests from GmxApiTest 51: [ RUN ] GmxApiTest.ApiRunnerRestrainedMD -51: Setting the LD random seed to -1006815619 +51: Setting the LD random seed to -71362049 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -52726,12 +52650,12 @@ 51: you might want to increase nstlist (this has no effect on accuracy) 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.001 0.001 188.8 +51: Time: 0.001 0.001 189.3 51: (ns/day) (hour/ns) -51: Performance: 870.232 0.028 -51: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (249 ms) +51: Performance: 854.473 0.028 +51: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (241 ms) 51: [ RUN ] GmxApiTest.SystemConstruction -51: Setting the LD random seed to -17826117 +51: Setting the LD random seed to -369134149 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -52758,13 +52682,13 @@ 51: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 51: Note that mdrun will redetermine rlist based on the actual pair-list setup 51: This run will generate roughly 0 Mb of data -51: [ OK ] GmxApiTest.SystemConstruction (190 ms) +51: [ OK ] GmxApiTest.SystemConstruction (182 ms) 51: [ RUN ] GmxApiTest.SaneVersionComparisons 51: [ OK ] GmxApiTest.SaneVersionComparisons (0 ms) 51: [ RUN ] GmxApiTest.VersionNamed0_1_Features 51: [ OK ] GmxApiTest.VersionNamed0_1_Features (0 ms) 51: [ RUN ] GmxApiTest.RunnerBasicMD -51: Setting the LD random seed to 1945996927 +51: Setting the LD random seed to -27263233 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -52809,12 +52733,12 @@ 51: you might want to increase nstlist (this has no effect on accuracy) 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.001 0.001 188.1 +51: Time: 0.001 0.001 188.4 51: (ns/day) (hour/ns) -51: Performance: 875.976 0.027 -51: [ OK ] GmxApiTest.RunnerBasicMD (189 ms) +51: Performance: 908.975 0.026 +51: [ OK ] GmxApiTest.RunnerBasicMD (184 ms) 51: [ RUN ] GmxApiTest.RunnerReinitialize -51: Setting the LD random seed to -1123093539 +51: Setting the LD random seed to 511377085 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -52860,9 +52784,9 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.002 0.001 192.7 +51: Time: 0.002 0.001 192.1 51: (ns/day) (hour/ns) -51: Performance: 3863.677 0.006 +51: Performance: 4080.034 0.006 51: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary/GmxApiTest_RunnerReinitialize.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 51: Changing nstlist from 10 to 50, rlist from 1.041 to 1.296 51: @@ -52878,12 +52802,12 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.002 0.001 192.3 +51: Time: 0.002 0.001 192.6 51: (ns/day) (hour/ns) -51: Performance: 3895.064 0.006 -51: [ OK ] GmxApiTest.RunnerReinitialize (194 ms) +51: Performance: 3937.368 0.006 +51: [ OK ] GmxApiTest.RunnerReinitialize (186 ms) 51: [ RUN ] GmxApiTest.RunnerContinuedMD -51: Setting the LD random seed to -1073858051 +51: Setting the LD random seed to -147407891 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -52925,9 +52849,9 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.001 0.001 190.2 +51: Time: 0.001 0.001 190.3 51: (ns/day) (hour/ns) -51: Performance: 2483.469 0.010 +51: Performance: 2690.282 0.009 51: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary/GmxApiTest_RunnerContinuedMD.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 51: Overriding nsteps with value passed on the command line: 20 steps, 0.0391 ps 51: Changing nstlist from 10 to 50, rlist from 1.041 to 1.296 @@ -52945,12 +52869,12 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.002 0.001 192.2 +51: Time: 0.002 0.001 192.3 51: (ns/day) (hour/ns) -51: Performance: 3835.759 0.006 -51: [ OK ] GmxApiTest.RunnerContinuedMD (194 ms) +51: Performance: 4215.418 0.006 +51: [ OK ] GmxApiTest.RunnerContinuedMD (186 ms) 51: [ RUN ] GmxApiTest.ApiRunnerStopSignalClient -51: Setting the LD random seed to -79698442 +51: Setting the LD random seed to -540022534 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -52992,9 +52916,9 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.001 0.001 188.0 +51: Time: 0.001 0.001 187.6 51: (ns/day) (hour/ns) -51: Performance: 588.598 0.041 +51: Performance: 621.412 0.039 51: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary/GmxApiTest_ApiRunnerStopSignalClient.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 51: Overriding nsteps with value passed on the command line: 2 steps, 0.00391 ps 51: Changing nstlist from 10 to 1, rlist from 1.041 to 1 @@ -53009,12 +52933,15 @@ 51: starting mdrun 'Water and methane' 51: 2 steps, 0.0 ps. 51: +51: NOTE: 15 % of the run time was spent in pair search, +51: you might want to increase nstlist (this has no effect on accuracy) +51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.001 0.000 186.3 +51: Time: 0.001 0.001 187.9 51: (ns/day) (hour/ns) -51: Performance: 690.526 0.035 -51: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (194 ms) -51: [----------] 8 tests from GmxApiTest (1210 ms total) +51: Performance: 666.468 0.036 +51: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (186 ms) +51: [----------] 8 tests from GmxApiTest (1165 ms total) 51: 51: [----------] 1 test from GmxApiBasicTest 51: [ RUN ] GmxApiBasicTest.Status @@ -53022,9 +52949,9 @@ 51: [----------] 1 test from GmxApiBasicTest (0 ms total) 51: 51: [----------] Global test environment tear-down -51: [==========] 9 tests from 2 test cases ran. (1210 ms total) +51: [==========] 9 tests from 2 test cases ran. (1165 ms total) 51: [ PASSED ] 9 tests. -51/54 Test #51: GmxapiExternalInterfaceTests ........ Passed 1.23 sec +51/54 Test #51: GmxapiExternalInterfaceTests ........ Passed 1.18 sec test 52 Start 52: GmxapiMpiTests @@ -53034,7 +52961,7 @@ 52: [----------] Global test environment set-up. 52: [----------] 8 tests from GmxApiTest 52: [ RUN ] GmxApiTest.ApiRunnerRestrainedMD -52: Setting the LD random seed to -27289 +52: Setting the LD random seed to -281315841 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -53076,12 +53003,12 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.001 0.001 189.2 +52: Time: 0.002 0.001 188.5 52: (ns/day) (hour/ns) -52: Performance: 793.485 0.030 -52: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (256 ms) +52: Performance: 397.783 0.060 +52: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (208 ms) 52: [ RUN ] GmxApiTest.SystemConstruction -52: Setting the LD random seed to -1218421281 +52: Setting the LD random seed to -1075855474 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -53108,13 +53035,13 @@ 52: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 52: Note that mdrun will redetermine rlist based on the actual pair-list setup 52: This run will generate roughly 0 Mb of data -52: [ OK ] GmxApiTest.SystemConstruction (192 ms) +52: [ OK ] GmxApiTest.SystemConstruction (248 ms) 52: [ RUN ] GmxApiTest.SaneVersionComparisons 52: [ OK ] GmxApiTest.SaneVersionComparisons (0 ms) 52: [ RUN ] GmxApiTest.VersionNamed0_1_Features 52: [ OK ] GmxApiTest.VersionNamed0_1_Features (0 ms) 52: [ RUN ] GmxApiTest.RunnerBasicMD -52: Setting the LD random seed to -135601041 +52: Setting the LD random seed to 1004468179 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -53155,13 +53082,16 @@ 52: 52: Writing final coordinates. 52: +52: NOTE: 11 % of the run time was spent in pair search, +52: you might want to increase nstlist (this has no effect on accuracy) +52: 52: Core t (s) Wall t (s) (%) 52: Time: 0.001 0.001 188.4 52: (ns/day) (hour/ns) -52: Performance: 792.893 0.030 -52: [ OK ] GmxApiTest.RunnerBasicMD (190 ms) +52: Performance: 914.062 0.026 +52: [ OK ] GmxApiTest.RunnerBasicMD (189 ms) 52: [ RUN ] GmxApiTest.RunnerReinitialize -52: Setting the LD random seed to 1542438893 +52: Setting the LD random seed to -1082474501 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -53207,9 +53137,9 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.002 0.001 192.3 +52: Time: 0.002 0.001 192.2 52: (ns/day) (hour/ns) -52: Performance: 3835.759 0.006 +52: Performance: 3717.750 0.006 52: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary/GmxApiTest_RunnerReinitialize.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 52: Changing nstlist from 10 to 50, rlist from 1.041 to 1.296 52: @@ -53225,12 +53155,12 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.002 0.001 192.5 +52: Time: 0.002 0.001 192.7 52: (ns/day) (hour/ns) -52: Performance: 3678.190 0.007 +52: Performance: 4199.934 0.006 52: [ OK ] GmxApiTest.RunnerReinitialize (193 ms) 52: [ RUN ] GmxApiTest.RunnerContinuedMD -52: Setting the LD random seed to 1524619199 +52: Setting the LD random seed to -1779803409 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -53272,9 +53202,9 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.001 0.001 190.0 +52: Time: 0.001 0.001 190.4 52: (ns/day) (hour/ns) -52: Performance: 2486.642 0.010 +52: Performance: 2518.007 0.010 52: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary/GmxApiTest_RunnerContinuedMD.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 52: Overriding nsteps with value passed on the command line: 20 steps, 0.0391 ps 52: Changing nstlist from 10 to 50, rlist from 1.041 to 1.296 @@ -53292,12 +53222,12 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.002 0.001 192.5 +52: Time: 0.001 0.001 191.7 52: (ns/day) (hour/ns) -52: Performance: 3851.662 0.006 +52: Performance: 4650.677 0.005 52: [ OK ] GmxApiTest.RunnerContinuedMD (192 ms) 52: [ RUN ] GmxApiTest.ApiRunnerStopSignalClient -52: Setting the LD random seed to 534642301 +52: Setting the LD random seed to 2080177535 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -53338,10 +53268,13 @@ 52: 52: Writing final coordinates. 52: +52: NOTE: 13 % of the run time was spent in pair search, +52: you might want to increase nstlist (this has no effect on accuracy) +52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.001 0.001 187.7 +52: Time: 0.001 0.001 188.2 52: (ns/day) (hour/ns) -52: Performance: 593.783 0.040 +52: Performance: 578.023 0.042 52: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary/GmxApiTest_ApiRunnerStopSignalClient.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 52: Overriding nsteps with value passed on the command line: 2 steps, 0.00391 ps 52: Changing nstlist from 10 to 1, rlist from 1.041 to 1 @@ -53357,11 +53290,11 @@ 52: 2 steps, 0.0 ps. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.001 0.000 186.2 +52: Time: 0.001 0.000 186.5 52: (ns/day) (hour/ns) -52: Performance: 693.911 0.035 -52: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (193 ms) -52: [----------] 8 tests from GmxApiTest (1216 ms total) +52: Performance: 733.840 0.033 +52: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (192 ms) +52: [----------] 8 tests from GmxApiTest (1222 ms total) 52: 52: [----------] 1 test from GmxApiBasicTest 52: [ RUN ] GmxApiBasicTest.Status @@ -53369,9 +53302,9 @@ 52: [----------] 1 test from GmxApiBasicTest (0 ms total) 52: 52: [----------] Global test environment tear-down -52: [==========] 9 tests from 2 test cases ran. (1216 ms total) +52: [==========] 9 tests from 2 test cases ran. (1222 ms total) 52: [ PASSED ] 9 tests. -52/54 Test #52: GmxapiMpiTests ...................... Passed 1.24 sec +52/54 Test #52: GmxapiMpiTests ...................... Passed 1.23 sec test 53 Start 53: GmxapiInternalInterfaceTests @@ -53381,7 +53314,7 @@ 53: [----------] Global test environment set-up. 53: [----------] 2 tests from GmxApiTest 53: [ RUN ] GmxApiTest.BuildApiWorkflowImpl -53: Setting the LD random seed to 790076919 +53: Setting the LD random seed to -404082946 53: Generated 331705 of the 331705 non-bonded parameter combinations 53: Generating 1-4 interactions: fudge = 0.5 53: Generated 331705 of the 331705 1-4 parameter combinations @@ -53408,9 +53341,9 @@ 53: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 53: Note that mdrun will redetermine rlist based on the actual pair-list setup 53: This run will generate roughly 0 Mb of data -53: [ OK ] GmxApiTest.BuildApiWorkflowImpl (199 ms) +53: [ OK ] GmxApiTest.BuildApiWorkflowImpl (263 ms) 53: [ RUN ] GmxApiTest.CreateApiWorkflow -53: Setting the LD random seed to -269124609 +53: Setting the LD random seed to -604110988 53: Generated 331705 of the 331705 non-bonded parameter combinations 53: Generating 1-4 interactions: fudge = 0.5 53: Generated 331705 of the 331705 1-4 parameter combinations @@ -53437,13 +53370,13 @@ 53: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 53: Note that mdrun will redetermine rlist based on the actual pair-list setup 53: This run will generate roughly 0 Mb of data -53: [ OK ] GmxApiTest.CreateApiWorkflow (185 ms) -53: [----------] 2 tests from GmxApiTest (385 ms total) +53: [ OK ] GmxApiTest.CreateApiWorkflow (203 ms) +53: [----------] 2 tests from GmxApiTest (466 ms total) 53: 53: [----------] Global test environment tear-down -53: [==========] 2 tests from 1 test case ran. (385 ms total) +53: [==========] 2 tests from 1 test case ran. (466 ms total) 53: [ PASSED ] 2 tests. -53/54 Test #53: GmxapiInternalInterfaceTests ........ Passed 0.40 sec +53/54 Test #53: GmxapiInternalInterfaceTests ........ Passed 0.48 sec test 54 Start 54: GmxapiInternalsMpiTests @@ -53453,7 +53386,7 @@ 54: [----------] Global test environment set-up. 54: [----------] 2 tests from GmxApiTest 54: [ RUN ] GmxApiTest.BuildApiWorkflowImpl -54: Setting the LD random seed to 2141187846 +54: Setting the LD random seed to 1610348014 54: Generated 331705 of the 331705 non-bonded parameter combinations 54: Generating 1-4 interactions: fudge = 0.5 54: Generated 331705 of the 331705 1-4 parameter combinations @@ -53480,9 +53413,9 @@ 54: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 54: Note that mdrun will redetermine rlist based on the actual pair-list setup 54: This run will generate roughly 0 Mb of data -54: [ OK ] GmxApiTest.BuildApiWorkflowImpl (242 ms) +54: [ OK ] GmxApiTest.BuildApiWorkflowImpl (244 ms) 54: [ RUN ] GmxApiTest.CreateApiWorkflow -54: Setting the LD random seed to -1352806437 +54: Setting the LD random seed to -436221969 54: Generated 331705 of the 331705 non-bonded parameter combinations 54: Generating 1-4 interactions: fudge = 0.5 54: Generated 331705 of the 331705 1-4 parameter combinations @@ -53509,24 +53442,24 @@ 54: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 54: Note that mdrun will redetermine rlist based on the actual pair-list setup 54: This run will generate roughly 0 Mb of data -54: [ OK ] GmxApiTest.CreateApiWorkflow (184 ms) -54: [----------] 2 tests from GmxApiTest (426 ms total) +54: [ OK ] GmxApiTest.CreateApiWorkflow (183 ms) +54: [----------] 2 tests from GmxApiTest (427 ms total) 54: 54: [----------] Global test environment tear-down -54: [==========] 2 tests from 1 test case ran. (426 ms total) +54: [==========] 2 tests from 1 test case ran. (427 ms total) 54: [ PASSED ] 2 tests. 54/54 Test #54: GmxapiInternalsMpiTests ............. Passed 0.45 sec 100% tests passed, 0 tests failed out of 54 Label Time Summary: -GTest = 114.19 sec*proc (54 tests) -IntegrationTest = 88.48 sec*proc (12 tests) -MpiTest = 61.58 sec*proc (8 tests) -SlowTest = 19.30 sec*proc (2 tests) -UnitTest = 6.41 sec*proc (40 tests) +GTest = 321.99 sec*proc (54 tests) +IntegrationTest = 226.11 sec*proc (12 tests) +MpiTest = 183.12 sec*proc (8 tests) +SlowTest = 83.10 sec*proc (2 tests) +UnitTest = 12.78 sec*proc (40 tests) -Total Test time (real) = 114.24 sec +Total Test time (real) = 322.04 sec /usr/bin/make -j12 -C build/basic-dp tests make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/basic-dp --check-build-system CMakeFiles/Makefile.cmake 0 @@ -53542,90 +53475,90 @@ /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= /usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/external/googletest/googlemock/gtest /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 0%] Built target lmfit_objlib -[ 0%] Built target linearalgebra -[ 0%] Built target vmddlopen -[ 1%] Built target tng_io_obj +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' Scanning dependencies of target gtest make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 0%] Built target lmfit_objlib +[ 1%] Built target scanner +[ 1%] Built target linearalgebra +[ 2%] Built target tng_io_obj +[ 4%] Built target thread_mpi /usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build +[ 4%] Built target release-version-info +[ 5%] Built target modularsimulator make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/external/googletest/googlemock/gtest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CREATE_SHARED_LIBRARY=1 -Dgtest_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -I/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=c++14 -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/src/gtest-all.cc -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 1%] Built target mdrun_objlib -[ 2%] Built target scanner -[ 4%] Built target thread_mpi -[ 5%] Built target modularsimulator -[ 5%] Built target release-version-info +[ 5%] Built target vmddlopen /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +[ 5%] Built target mdrun_objlib make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' @@ -53701,13 +53634,12 @@ /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/DependInfo.cmake --color= cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' @@ -53715,115 +53647,116 @@ make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= -Scanning dependencies of target testutils-mpi-test Scanning dependencies of target utility-mpi-test +Scanning dependencies of target testutils-mpi-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -Scanning dependencies of target fft-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build -Scanning dependencies of target onlinehelp-test-shared -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' Scanning dependencies of target domdec-test +Scanning dependencies of target mdrun_test_infrastructure make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/mpitest.cpp -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp -Scanning dependencies of target gpu_utils-test -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build Scanning dependencies of target testutils-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -Scanning dependencies of target applied_forces-test -Scanning dependencies of target mdrun_test_infrastructure -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/hashedmap.cpp /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build -/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/mpitest.cpp /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build +Scanning dependencies of target onlinehelp-test-shared make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/energyreader.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/interactivetest.cpp -Scanning dependencies of target utility-test +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/hashedmap.cpp +Scanning dependencies of target gpu_utils-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +Scanning dependencies of target applied_forces-test +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' Scanning dependencies of target mdlib-test -Scanning dependencies of target ewald-test +Scanning dependencies of target utility-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests/fft.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/gputest.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +Scanning dependencies of target fft-test +Scanning dependencies of target ewald-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/alignedallocator.cpp -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmebsplinetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests/fft.cpp +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/gputest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmebsplinetest.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/clfftinitializer.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/hostallocator.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/energycomparison.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constr.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/hostallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constr.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' [ 69%] Built target testutils-mpi-test /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread Scanning dependencies of target hardware-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build +[ 69%] Built target utility-mpi-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests/hardwaretopology.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp -[ 69%] Built target utility-mpi-test /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake Scanning dependencies of target math-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/arrayrefwithpadding.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o /usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' @@ -53836,8 +53769,8 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingoptions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' @@ -53850,13 +53783,15 @@ /usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/accessor_policy.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/moduletest.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extents.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' [ 69%] Built target domdec-test /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend @@ -53867,25 +53802,23 @@ /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpformat.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mdmodulenotification.cpp -/usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -/usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 69%] Built target mdrunutility-test-shared +[ 70%] Built target hardware-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Scanning dependencies of target options-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/abstractoptionstorage.cpp -[ 70%] Built target hardware-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mdmodulenotification.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o +/usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 70%] Built target mdrunutility-test-shared /usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= @@ -53894,42 +53827,45 @@ /usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbc.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/arrayref.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestdata.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extensions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/arrayref.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbcenums.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/terminationhelper.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/coordinatetransformation.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extensions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/testasserts_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/coordinatetransformation.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/terminationhelper.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestdata.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectorycomparison.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestrunners.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/layouts.cpp [ 70%] Built target pbcutil-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectorycomparison.cpp Scanning dependencies of target random-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/exponentialdistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/layouts.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/electricfield.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/ebin.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/xvgtest_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/mdspan.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/ebin.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfit.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/gammadistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectoryreader.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/gammadistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/energyoutput.cpp [ 70%] Built target onlinehelp-test @@ -53941,137 +53877,133 @@ /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/restraint/tests/manager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfit.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 71%] Built target testutils-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -P CMakeFiles/mdrun_test_infrastructure.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun_test_infrastructure.dir/link.txt --verbose=1 +[ 71%] Built target applied_forces-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= +/usr/bin/ar qc ../../../../lib/libmdrun_test_infrastructure.a CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o +/usr/bin/ranlib ../../../../lib/libmdrun_test_infrastructure.a Scanning dependencies of target table-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests/splinetable.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectoryreader.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 72%] Built target applied_forces-test +[ 71%] Built target mdrun_test_infrastructure /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Scanning dependencies of target taskassignment-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests/usergpuids.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -P CMakeFiles/mdrun_test_infrastructure.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun_test_infrastructure.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libmdrun_test_infrastructure.a CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o -/usr/bin/ranlib ../../../../lib/libmdrun_test_infrastructure.a -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoption.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 72%] Built target mdrun_test_infrastructure +[ 72%] Built target testutils-test /usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend -[ 72%] Built target restraintpotential-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= +Scanning dependencies of target topology-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/exclusionblocks.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoption.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/mtop.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 72%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= -Scanning dependencies of target topology-test Scanning dependencies of target pull-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/exclusionblocks.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests/pull.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/normaldistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/symtab.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/dofit.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoptionmanager.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/mtop.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/dofit.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 +[ 72%] Built target pull-test /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/symtab.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/seed.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 72%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Scanning dependencies of target awh-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/seed.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/bias.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/exponentialmovingaverage.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 72%] Built target pull-test +[ 72%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoptionmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/expanded.cpp Scanning dependencies of target simd-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/bootstrap_loadstore.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/exponentialmovingaverage.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/base.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/expanded.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/base.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 72%] Built target taskassignment-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 74%] Built target topology-test /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend +[ 74%] Built target taskassignment-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= Scanning dependencies of target compat-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-unused-member-function -o CMakeFiles/compat-test.dir/optional.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/optional.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/functions.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 74%] Built target topology-test -/usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= Scanning dependencies of target gmxana-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-unused-member-function -o CMakeFiles/compat-test.dir/optional.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/optional.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/entropy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/entropy.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrog.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/functions.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_traj.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/biasstate.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/option.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmetestcommon.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrog.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/optionsassigner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/biasstate.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' [ 74%] Built target mdspan-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend @@ -54082,13 +54014,19 @@ /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_mindist.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmetestcommon.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/gausstransform.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_msd.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/optionsassigner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/grid.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_mindist.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/gausstransform.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformintdistribution.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' [ 74%] Built target table-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend @@ -54099,19 +54037,20 @@ /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/grid.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_msd.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformintdistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 75%] Built target gmxana-test cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settle.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfittingforce.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 74%] Built target awh-test +[ 75%] Built target awh-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/DependInfo.cmake --color= @@ -54122,21 +54061,24 @@ cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 74%] Built target ewald-test +[ 75%] Built target ewald-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color= Scanning dependencies of target gmxpreprocess-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/editconf.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx3-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 75%] Built target gmxana-test +[ 75%] Built target pdb2gmx3-test /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake --color= @@ -54145,30 +54087,37 @@ /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/autocorr.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settle.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfittingforce.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast 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/usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/string_view.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/invertmatrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/shake.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genconf.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/repeatingsection.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/correlationdataset.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/matrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genion.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp -[ 75%] Built target pdb2gmx3-test +[ 76%] Built target random-test /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/string_view.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genconf.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_vector_operations.cpp Scanning dependencies of target analysisdata-test-shared +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx2-test.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/datatest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx2-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx2-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/mock_datamodule.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/expfit.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 76%] Built target pdb2gmx2-test +[ 77%] Built target pdb2gmx2-test /usr/bin/make -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/DependInfo.cmake --color= @@ -54177,21 +54126,15 @@ /usr/bin/make -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/builder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/builder.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_vector_operations.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/correlationdataset.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genion.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/expfit.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/invertmatrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/mock_datamodule.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_math.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/repeatingsection.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genrestr.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/simulationsignal.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_math.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx1-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 77%] Built target random-test +[ 77%] Built target pdb2gmx1-test /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/energyanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake --color= @@ -54200,11 +54143,7 @@ /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/energyanalysis/tests/legacyenergy.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx1-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestdata.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 77%] Built target pdb2gmx1-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp /usr/bin/make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake --color= @@ -54213,27 +54152,26 @@ /usr/bin/make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/dump.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/dump.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/matrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/report_methods.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/report_methods.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' [ 77%] Built target correlations-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/multidimarray.cpp Scanning dependencies of target fileio-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/confio.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/report_methods.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/report_methods.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroups.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/outputadaptercontainer.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/outputadaptercontainer.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' [ 78%] Built target energyanalysis-test /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend @@ -54245,39 +54183,36 @@ make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/indexutil.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask32.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/shake.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/trjconv.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/timeunitmanager.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/outputadapters.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/multidimarray.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/filemd5.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/trjconv.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/insert_molecules.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/timeunitmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/filemd5.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroupscog.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external 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/build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/paddedvector.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/readir.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/simulationsignal.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask64.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/tool-test.dir/dump.cpp.o CMakeFiles/tool-test.dir/report_methods.cpp.o CMakeFiles/tool-test.dir/trjconv.cpp.o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/tool-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -/usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/treesupport.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/readir.cpp -[ 78%] Built target analysisdata-test-shared +[ 78%] Built target compat-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/nbsearch.cpp Scanning dependencies of target mdrun-modules-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/densityfittingmodule.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o +/usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 78%] Built target tool-test +[ 78%] Built target analysisdata-test-shared /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/DependInfo.cmake --color= @@ -54286,38 +54221,25 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/tpitest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymap.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_memory.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/nbsearch.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/expanded.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/tool-test.dir/dump.cpp.o CMakeFiles/tool-test.dir/report_methods.cpp.o CMakeFiles/tool-test.dir/trjconv.cpp.o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/tool-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 78%] Built target compat-test +[ 80%] Built target mdlib-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/paddedvector.cpp Scanning dependencies of target mdrun-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/dispersion_correction.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/dispersion_correction.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroups.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/treesupport.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/orires.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/orires.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask128.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/solvate.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/interactiveMD.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/pmetest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/topdirs.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroupscog.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-tpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-tpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mimic.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 80%] Built target mdrun-tpi-test +[ 80%] Built target tool-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/DependInfo.cmake --color= @@ -54326,14 +54248,24 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/compressed_x_output.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/requirements.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/requirements.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/poscalc.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/cstringutil.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/solvate.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymap.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/interactiveMD.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/orires.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/orires.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_memory.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/topdirs.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/pmetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask128.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/helpwriting.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/outputfiles.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-tpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-tpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mimic.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymapheader.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -[ 81%] Built target gmxpreprocess-test +[ 81%] Built target mdrun-tpi-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake --color= @@ -54342,15 +54274,11 @@ /usr/bin/make -f 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/minimize.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o 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-DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/simulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/simulator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/defaultinitializationallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 82%] Built target mdlib-test +[ 82%] Built target gmxpreprocess-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/readinp.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun-mpi-test @@ -54358,17 +54286,15 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/domain_decomposition.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_integer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setatoms.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/helpwriting.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectioncollection.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-modules-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-modules-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/enumerationhelpers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/poscalc.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/simulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/simulator.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/minimize.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 82%] Built target mdrun-modules-test +[ 83%] Built target options-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/DependInfo.cmake --color= @@ -54377,12 +54303,12 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/exactcontinuation.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/outputfiles.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/fileioxdrserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-modules-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-modules-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/requirements.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/requirements.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/cstringutil.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 83%] Built target options-test +[ 83%] Built target mdrun-modules-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/DependInfo.cmake --color= @@ -54391,17 +54317,26 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/periodicactions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectioncollection.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/readinp.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/defaultinitializationallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectory_writing.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setatoms.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/tngio.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setbothtime.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/fixedcapacityvector.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_floatingpoint.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g 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-DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setstarttime.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-output-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-output-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mimic.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 84%] Built target fileio-test +[ 84%] Built target mdrun-output-test /usr/bin/make -f src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/DependInfo.cmake --color= @@ -54410,50 +54345,31 @@ /usr/bin/make -f src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/restraint.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_vector_operations.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/nonbonded_bench.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/inmemoryserializer.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/swapcoords.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/normalmodes.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/settimestep.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_math.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectory_writing.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mimic.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/status.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreeserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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'/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 84%] Built target mdrun-test +[ 85%] Built target fileio-test /usr/bin/make -f src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp Scanning dependencies of target gmxapi-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/restraint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/restraint.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_floatingpoint.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/vectypes.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/inmemoryserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-coordination-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-coordination-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 84%] Built target mdrun-mpi-coordination-test +[ 85%] Built target mdrun-mpi-coordination-test /usr/bin/make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/DependInfo.cmake --color= @@ -54462,47 +54378,65 @@ /usr/bin/make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests/workflow.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/initialconstraints.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/multisim.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_vector_operations.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/status.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/status.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/status.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/settimestep.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o 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../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem 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/build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/testmodule.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 85%] Built target mdrun-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" 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-I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/runner.cpp +cd 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../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi_d.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/multisimtest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/rerun.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 85%] Built target coordinateio-test +[ 85%] Built target workflow-details-mpi-test /usr/bin/make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/DependInfo.cmake --color= -[ 87%] Built target mdrun-output-test -/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Scanning dependencies of target workflow-details-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/workflow.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests/workflow.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/termination.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/termination.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_util.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/pmetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/coordinateio-test.dir/builder.cpp.o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o CMakeFiles/coordinateio-test.dir/requirements.cpp.o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/coordinateio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 87%] Built target math-test +/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/runner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/runner.cpp Scanning dependencies of target commandline-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/runner.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/rerun.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/multisimtest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_util.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/status.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/status.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/pmetest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/termination.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/termination.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/system.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/system.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/workflow-details-test.dir/workflow.cpp.o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi_d.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectionoption.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-mpi-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi_d.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/stopsignaler.cpp -[ 88%] Built target workflow-details-test +[ 88%] Built target coordinateio-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= @@ -54511,10 +54445,17 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/stopsignaler.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectionoption.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/workflow-details-test.dir/workflow.cpp.o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi_d.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/replicaexchange.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_math.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 88%] Built target workflow-details-mpi-test +[ 89%] Built target workflow-details-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= @@ -54523,14 +54464,11 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/version.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/version.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-io-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o CMakeFiles/mdrun-io-test.dir/grompp.cpp.o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-io-test.dir/termination.cpp.o CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-io-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 89%] Built target math-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/replicaexchange.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_math.cpp +[ 90%] Built target mdrun-io-test /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake --color= @@ -54539,109 +54477,104 @@ /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/analysisdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/runner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/runner.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/logger.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/arraydata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/stopsignaler.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi_d.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -[ 89%] Built target gmxapi-mpi-test +[ 90%] Built target gmxapi-mpi-test /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/simple_mdrun.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp Scanning dependencies of target trajectoryanalysis-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/moduletest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/mutex.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/average.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/logger.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/simple_mdrun.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 90%] Built target mdrunutility-mpi-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 91%] Built target simd-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-test.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 89%] Built target mdrunutility-mpi-test -[ 90%] Built target mdrun-mpi-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxapi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-test.dir/status.cpp.o CMakeFiles/gmxapi-test.dir/system.cpp.o CMakeFiles/gmxapi-test.dir/version.cpp.o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-test.dir/runner.cpp.o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi_d.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +[ 92%] Built target mdrun-mpi-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineparser.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 91%] Built target mdrunutility-test +[ 94%] Built target gmxapi-test cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-io-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o CMakeFiles/mdrun-io-test.dir/grompp.cpp.o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-io-test.dir/termination.cpp.o CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-io-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/stopsignaler.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/mutex.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 92%] Built target mdrun-io-test +[ 95%] Built target mdrunutility-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/filenm.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/angle.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/histogram.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o 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/build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineparser.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat 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/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat 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-I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textreader.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 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../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp -[ 95%] Built target gmxapi-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/path.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' [ 95%] Built target mdrun-non-integrator-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/filenm.cpp -cd 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem 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-I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/arraydata.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textwriter.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/lifetime.cpp +[ 96%] Built target commandline-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" 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CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/typetraits.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/trajectoryanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 96%] Built target trajectoryanalysis-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 97%] Built target commandline-test +[ 96%] Built target selection-test cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 97%] Built target analysisdata-test +[ 96%] Built target analysisdata-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/trajectoryanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 97%] Built target trajectoryanalysis-test cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' @@ -54681,26 +54614,26 @@ 1: [----------] Global test environment set-up. 1: [----------] 10 tests from InteractiveTestHelperTest 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession -1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (1 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput -1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) -1: [----------] 10 tests from InteractiveTestHelperTest (4 ms total) +1: [----------] 10 tests from InteractiveTestHelperTest (1 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData @@ -54712,15 +54645,15 @@ 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData 1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData -1: [ OK ] ReferenceDataTest.HandlesVectorData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData 1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData -1: [ OK ] ReferenceDataTest.HandlesIncorrectData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType -1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (1 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData @@ -54732,7 +54665,7 @@ 1: [ RUN ] ReferenceDataTest.HandlesAnys 1: [ OK ] ReferenceDataTest.HandlesAnys (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree -1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (1 ms) +1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey @@ -54740,7 +54673,7 @@ 1: [ RUN ] ReferenceDataTest.HandlesAnysWithIncorrectValue 1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectValue (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesAnysWithIncorrectType -1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectType (1 ms) +1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings @@ -54748,7 +54681,7 @@ 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace 1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings -1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms) +1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices @@ -54758,7 +54691,7 @@ 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds -1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (1 ms) +1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (8 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues 1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges @@ -54766,12 +54699,12 @@ 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) -1: [----------] 34 tests from ReferenceDataTest (7 ms total) +1: [----------] 34 tests from ReferenceDataTest (11 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues @@ -54805,17 +54738,17 @@ 1: [ RUN ] XvgTests.CreateFile 1: [ OK ] XvgTests.CreateFile (0 ms) 1: [ RUN ] XvgTests.CheckMissing -1: [ OK ] XvgTests.CheckMissing (1 ms) +1: [ OK ] XvgTests.CheckMissing (0 ms) 1: [ RUN ] XvgTests.CheckExtra 1: [ OK ] XvgTests.CheckExtra (0 ms) 1: [ RUN ] XvgTests.ReadIncorrect -1: [ OK ] XvgTests.ReadIncorrect (1 ms) -1: [----------] 4 tests from XvgTests (2 ms total) +1: [ OK ] XvgTests.ReadIncorrect (0 ms) +1: [----------] 4 tests from XvgTests (0 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (13 ms total) +1: [==========] 59 tests from 5 test cases ran. (12 ms total) 1: [ PASSED ] 59 tests. - 1/54 Test #1: TestUtilsUnitTests .................. Passed 0.04 sec + 1/54 Test #1: TestUtilsUnitTests .................. Passed 0.06 sec test 2 Start 2: TestUtilsMpiUnitTests @@ -54825,13 +54758,13 @@ 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs -2: [ OK ] MpiSelfTest.Runs (0 ms) -2: [----------] 1 test from MpiSelfTest (0 ms total) +2: [ OK ] MpiSelfTest.Runs (24 ms) +2: [----------] 1 test from MpiSelfTest (24 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 1 test from 1 test case ran. (1 ms total) +2: [==========] 1 test from 1 test case ran. (24 ms total) 2: [ PASSED ] 1 test. - 2/54 Test #2: TestUtilsMpiUnitTests ............... Passed 0.02 sec + 2/54 Test #2: TestUtilsMpiUnitTests ............... Passed 0.05 sec test 3 Start 3: UtilityUnitTests @@ -54961,7 +54894,7 @@ 3: [ RUN ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks (0 ms) 3: [ RUN ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks -3: [ OK ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks (1 ms) +3: [ OK ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks (0 ms) 3: [ RUN ] ArrayRefTest/1.ConstructFromPointersWorks 3: [ OK ] ArrayRefTest/1.ConstructFromPointersWorks (0 ms) 3: [ RUN ] ArrayRefTest/1.ConstructFromNonConstPointersWorks @@ -54972,7 +54905,7 @@ 3: [ OK ] ArrayRefTest/1.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/1 (1 ms total) +3: [----------] 9 tests from ArrayRefTest/1 (0 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/2.MakeWithAssignmentWorks @@ -55251,7 +55184,7 @@ 3: [ RUN ] ArrayRefTest/15.MakeWithAssignmentWorks 3: [ OK ] ArrayRefTest/15.MakeWithAssignmentWorks (0 ms) 3: [ RUN ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks -3: [ OK ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks (1 ms) +3: [ OK ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks (0 ms) 3: [ RUN ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks (0 ms) 3: [ RUN ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks @@ -55266,7 +55199,7 @@ 3: [ OK ] ArrayRefTest/15.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/15 (1 ms total) +3: [----------] 9 tests from ArrayRefTest/15 (0 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/16, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/16.MakeWithAssignmentWorks @@ -55287,7 +55220,7 @@ 3: [ OK ] ArrayRefTest/16.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/16 (0 ms total) +3: [----------] 9 tests from ArrayRefTest/16 (1 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/17, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/17.MakeWithAssignmentWorks @@ -55413,14 +55346,14 @@ 3: 3: [----------] 4 tests from KeyValueTreeSerializerTest 3: [ RUN ] KeyValueTreeSerializerTest.EmptyTree -3: [ OK ] KeyValueTreeSerializerTest.EmptyTree (1 ms) +3: [ OK ] KeyValueTreeSerializerTest.EmptyTree (0 ms) 3: [ RUN ] KeyValueTreeSerializerTest.SimpleObject 3: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms) 3: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays 3: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) 3: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects 3: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) -3: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) +3: [----------] 4 tests from KeyValueTreeSerializerTest (0 ms total) 3: 3: [----------] 6 tests from TreeValueTransformTest 3: [ RUN ] TreeValueTransformTest.SimpleTransforms @@ -55452,12 +55385,12 @@ 3: [ RUN ] LoggerTest.LevelFilteringWorks 3: [ OK ] LoggerTest.LevelFilteringWorks (0 ms) 3: [ RUN ] LoggerTest.LogsToMultipleStreams -3: [ OK ] LoggerTest.LogsToMultipleStreams (1 ms) +3: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms) 3: [ RUN ] LoggerTest.LogsToMultipleFiles 3: [ OK ] LoggerTest.LogsToMultipleFiles (0 ms) 3: [ RUN ] LoggerTest.LogsToStreamAndFile 3: [ OK ] LoggerTest.LogsToStreamAndFile (0 ms) -3: [----------] 7 tests from LoggerTest (1 ms total) +3: [----------] 7 tests from LoggerTest (0 ms total) 3: 3: [----------] 4 tests from MutexBasicTest 3: [ RUN ] MutexBasicTest.CanBeMade @@ -55472,12 +55405,12 @@ 3: 3: [----------] 3 tests from MutexTaskTest 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock -3: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (0 ms) +3: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (14 ms) 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread -3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (1 ms) +3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (20 ms) 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) -3: [----------] 3 tests from MutexTaskTest (1 ms total) +3: [----------] 3 tests from MutexTaskTest (34 ms total) 3: 3: [----------] 2 tests from PathTest 3: [ RUN ] PathTest.StripSourcePrefixWorks @@ -55503,11 +55436,11 @@ 3: [ RUN ] StringUtilityTest.StripString 3: [ OK ] StringUtilityTest.StripString (0 ms) 3: [ RUN ] StringUtilityTest.SplitString -3: [ OK ] StringUtilityTest.SplitString (0 ms) +3: [ OK ] StringUtilityTest.SplitString (1 ms) 3: [ RUN ] StringUtilityTest.SplitDelimitedString 3: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) 3: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString -3: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (1 ms) +3: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (0 ms) 3: [ RUN ] StringUtilityTest.CanCompareCaseInsensitive 3: [ OK ] StringUtilityTest.CanCompareCaseInsensitive (0 ms) 3: [ RUN ] StringUtilityTest.CanCompareCaseInsensitiveInLength @@ -55587,7 +55520,7 @@ 3: [ OK ] TextWriterTest.TracksNewlines (0 ms) 3: [ RUN ] TextWriterTest.PreservesTrailingWhitespace 3: [ OK ] TextWriterTest.PreservesTrailingWhitespace (0 ms) -3: [----------] 6 tests from TextWriterTest (1 ms total) +3: [----------] 6 tests from TextWriterTest (0 ms total) 3: 3: [----------] 1 test from TypeTraitsTest 3: [ RUN ] TypeTraitsTest.IsIntegralConstant @@ -55665,24 +55598,24 @@ 3: 3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (0 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (15 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (16 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (1 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (16 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (16 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (16 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (16 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) -3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (1 ms total) +3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (95 ms total) 3: 3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 @@ -55702,9 +55635,9 @@ 3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (0 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 347 tests from 56 test cases ran. (10 ms total) +3: [==========] 347 tests from 56 test cases ran. (141 ms total) 3: [ PASSED ] 347 tests. - 3/54 Test #3: UtilityUnitTests .................... Passed 0.05 sec + 3/54 Test #3: UtilityUnitTests .................... Passed 0.18 sec test 4 Start 4: UtilityMpiUnitTests @@ -55714,15 +55647,15 @@ 4: [----------] Global test environment set-up. 4: [----------] 2 tests from PhysicalNodeCommunicatorTest 4: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct -4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (1 ms) +4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (52 ms) 4: [ RUN ] PhysicalNodeCommunicatorTest.CanCallBarrier -4: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (6 ms) -4: [----------] 2 tests from PhysicalNodeCommunicatorTest (7 ms total) +4: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (48 ms) +4: [----------] 2 tests from PhysicalNodeCommunicatorTest (100 ms total) 4: 4: [----------] Global test environment tear-down -4: [==========] 2 tests from 1 test case ran. (7 ms total) +4: [==========] 2 tests from 1 test case ran. (100 ms total) 4: [ PASSED ] 2 tests. - 4/54 Test #4: UtilityMpiUnitTests ................. Passed 0.02 sec + 4/54 Test #4: UtilityMpiUnitTests ................. Passed 0.13 sec test 5 Start 5: MdlibUnitTest @@ -55737,21 +55670,21 @@ 5: 5: [----------] 2 tests from PrEbinTest 5: [ RUN ] PrEbinTest.HandlesAverages -5: [ OK ] PrEbinTest.HandlesAverages (1 ms) +5: [ OK ] PrEbinTest.HandlesAverages (0 ms) 5: [ RUN ] PrEbinTest.HandlesEmptyAverages 5: [ OK ] PrEbinTest.HandlesEmptyAverages (0 ms) -5: [----------] 2 tests from PrEbinTest (1 ms total) +5: [----------] 2 tests from PrEbinTest (0 ms total) 5: 5: [----------] 4 tests from ShakeTest 5: [ RUN ] ShakeTest.ConstrainsOneBond -5: [ OK ] ShakeTest.ConstrainsOneBond (1 ms) +5: [ OK ] ShakeTest.ConstrainsOneBond (0 ms) 5: [ RUN ] ShakeTest.ConstrainsTwoDisjointBonds 5: [ OK ] ShakeTest.ConstrainsTwoDisjointBonds (0 ms) 5: [ RUN ] ShakeTest.ConstrainsTwoBondsWithACommonAtom 5: [ OK ] ShakeTest.ConstrainsTwoBondsWithACommonAtom (0 ms) 5: [ RUN ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms 5: [ OK ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms (0 ms) -5: [----------] 4 tests from ShakeTest (1 ms total) +5: [----------] 4 tests from ShakeTest (0 ms total) 5: 5: [----------] 1 test from NullSignalTest 5: [ RUN ] NullSignalTest.NullSignallerWorks @@ -55773,11 +55706,11 @@ 5: [ OK ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace (0 ms) 5: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace 5: [ OK ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace (0 ms) -5: [----------] 7 tests from SignalTest (1 ms total) +5: [----------] 7 tests from SignalTest (0 ms total) 5: 5: [----------] 9 tests from UpdateGroups 5: [ RUN ] UpdateGroups.ethaneUA -5: [ OK ] UpdateGroups.ethaneUA (0 ms) +5: [ OK ] UpdateGroups.ethaneUA (1 ms) 5: [ RUN ] UpdateGroups.methane 5: [ OK ] UpdateGroups.methane (0 ms) 5: [ RUN ] UpdateGroups.ethane @@ -55794,16 +55727,16 @@ 5: [ OK ] UpdateGroups.waterFlexAngle (0 ms) 5: [ RUN ] UpdateGroups.twoMoltypes 5: [ OK ] UpdateGroups.twoMoltypes (0 ms) -5: [----------] 9 tests from UpdateGroups (0 ms total) +5: [----------] 9 tests from UpdateGroups (1 ms total) 5: 5: [----------] 1 test from UpdateGroupsCog 5: [ RUN ] UpdateGroupsCog.ComputesCogs -5: [ OK ] UpdateGroupsCog.ComputesCogs (1 ms) -5: [----------] 1 test from UpdateGroupsCog (1 ms total) +5: [ OK ] UpdateGroupsCog.ComputesCogs (0 ms) +5: [----------] 1 test from UpdateGroupsCog (0 ms total) 5: 5: [----------] 84 tests from WithParameters/ConstraintsTest 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/0 -5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/0 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/0 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/1 5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/1 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/2 @@ -55817,7 +55750,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.TwoDisjointConstraints/2 5: [ OK ] WithParameters/ConstraintsTest.TwoDisjointConstraints/2 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TwoDisjointConstraints/3 -5: [ OK ] WithParameters/ConstraintsTest.TwoDisjointConstraints/3 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.TwoDisjointConstraints/3 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TwoDisjointConstraints/4 5: [ OK ] WithParameters/ConstraintsTest.TwoDisjointConstraints/4 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TwoDisjointConstraints/5 @@ -55861,13 +55794,13 @@ 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/4 5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/4 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/5 -5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/5 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/5 (8 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/6 5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/6 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/7 5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/7 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/8 -5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/8 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/8 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/9 5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/9 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/10 @@ -55905,7 +55838,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/10 5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/10 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/11 -5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/11 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/11 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/12 5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/12 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/13 @@ -55917,7 +55850,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/16 5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/16 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/17 -5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/17 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/17 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/18 5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/18 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/19 @@ -55953,7 +55886,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/14 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/14 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/15 -5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/15 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/15 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/16 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/16 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/17 @@ -55970,42 +55903,42 @@ 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/22 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 (0 ms) -5: [----------] 84 tests from WithParameters/ConstraintsTest (4 ms total) +5: [----------] 84 tests from WithParameters/ConstraintsTest (10 ms total) 5: 5: [----------] 11 tests from WithParameters/EnergyOutputTest 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/0 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_0.edr as double precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/0 (3 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/0 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/1 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_1.edr as double precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/1 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/1 (0 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/2 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_2.edr as double precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/3 -5: [ OK ] WithParameters/EnergyOutputTest.CheckOutput/3 (1 ms) +5: [ OK ] WithParameters/EnergyOutputTest.CheckOutput/3 (0 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/4 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_4.edr as double precision energy file -5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (9 ms) +5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (13 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/5 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_5.edr as double precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (3 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/6 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_6.edr as double precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/6 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/6 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/7 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_7.edr as double precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (5 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/8 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_8.edr as double precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/8 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/8 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/9 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_9.edr as double precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/9 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/10 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_10.edr as double precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/10 (2 ms) -5: [----------] 11 tests from WithParameters/EnergyOutputTest (31 ms total) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/10 (1 ms) +5: [----------] 11 tests from WithParameters/EnergyOutputTest (35 ms total) 5: 5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/0 @@ -56097,17 +56030,17 @@ 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/2 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/2 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/3 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/3 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/3 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/4 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/4 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/5 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/5 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/6 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (4 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (3 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/7 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/7 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/8 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/8 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/8 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/9 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/9 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/10 @@ -56122,11 +56055,11 @@ 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/14 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/15 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/15 (1 ms) -5: [----------] 16 tests from WithParameters/LeapFrogTest (16 ms total) +5: [----------] 16 tests from WithParameters/LeapFrogTest (18 ms total) 5: 5: [----------] 13 tests from WithParameters/SettleTest 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2 @@ -56134,29 +56067,29 @@ 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/3 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/3 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/4 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/5 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/6 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/7 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (8 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (0 ms) -5: [----------] 13 tests from WithParameters/SettleTest (6 ms total) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (1 ms) +5: [----------] 13 tests from WithParameters/SettleTest (12 ms total) 5: 5: [----------] Global test environment tear-down -5: [==========] 187 tests from 13 test cases ran. (63 ms total) +5: [==========] 187 tests from 13 test cases ran. (77 ms total) 5: [ PASSED ] 187 tests. - 5/54 Test #5: MdlibUnitTest ....................... Passed 0.09 sec + 5/54 Test #5: MdlibUnitTest ....................... Passed 0.12 sec test 6 Start 6: AppliedForcesUnitTest @@ -56173,7 +56106,7 @@ 6: 6: [----------] 8 tests from DensityFittingOptionsTest 6: [ RUN ] DensityFittingOptionsTest.DefaultParameters -6: [ OK ] DensityFittingOptionsTest.DefaultParameters (1 ms) +6: [ OK ] DensityFittingOptionsTest.DefaultParameters (0 ms) 6: [ RUN ] DensityFittingOptionsTest.OptionSetsActive 6: [ OK ] DensityFittingOptionsTest.OptionSetsActive (0 ms) 6: [ RUN ] DensityFittingOptionsTest.OutputNoDefaultValuesWhenInactive @@ -56183,12 +56116,12 @@ 6: [ RUN ] DensityFittingOptionsTest.CanConvertGroupStringToIndexGroup 6: [ OK ] DensityFittingOptionsTest.CanConvertGroupStringToIndexGroup (0 ms) 6: [ RUN ] DensityFittingOptionsTest.InternalsToKvt -6: [ OK ] DensityFittingOptionsTest.InternalsToKvt (0 ms) +6: [ OK ] DensityFittingOptionsTest.InternalsToKvt (1 ms) 6: [ RUN ] DensityFittingOptionsTest.KvtToInternal -6: [ OK ] DensityFittingOptionsTest.KvtToInternal (1 ms) +6: [ OK ] DensityFittingOptionsTest.KvtToInternal (0 ms) 6: [ RUN ] DensityFittingOptionsTest.RoundTripForInternalsIsIdempotent 6: [ OK ] DensityFittingOptionsTest.RoundTripForInternalsIsIdempotent (0 ms) -6: [----------] 8 tests from DensityFittingOptionsTest (2 ms total) +6: [----------] 8 tests from DensityFittingOptionsTest (1 ms total) 6: 6: [----------] 7 tests from DensityFittingAmplitudeLookupTest 6: [ RUN ] DensityFittingAmplitudeLookupTest.Unity @@ -56214,12 +56147,12 @@ 6: [ OK ] ElectricFieldTest.Oscillating (0 ms) 6: [ RUN ] ElectricFieldTest.Pulsed 6: [ OK ] ElectricFieldTest.Pulsed (0 ms) -6: [----------] 3 tests from ElectricFieldTest (1 ms total) +6: [----------] 3 tests from ElectricFieldTest (0 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 20 tests from 4 test cases ran. (4 ms total) +6: [==========] 20 tests from 4 test cases ran. (2 ms total) 6: [ PASSED ] 20 tests. - 6/54 Test #6: AppliedForcesUnitTest ............... Passed 0.02 sec + 6/54 Test #6: AppliedForcesUnitTest ............... Passed 0.03 sec test 7 Start 7: CommandLineUnitTests @@ -56231,16 +56164,16 @@ 7: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp 7: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) 7: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic -7: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (1 ms) +7: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 7: [ RUN ] CommandLineHelpModuleTest.ExportsHelp 7: [ OK ] CommandLineHelpModuleTest.ExportsHelp (1 ms) -7: [----------] 3 tests from CommandLineHelpModuleTest (3 ms total) +7: [----------] 3 tests from CommandLineHelpModuleTest (2 ms total) 7: 7: [----------] 7 tests from CommandLineHelpWriterTest 7: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes 7: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables -7: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (1 ms) +7: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions 7: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions @@ -56250,8 +56183,8 @@ 7: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText 7: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesKnownIssues -7: [ OK ] CommandLineHelpWriterTest.HandlesKnownIssues (1 ms) -7: [----------] 7 tests from CommandLineHelpWriterTest (2 ms total) +7: [ OK ] CommandLineHelpWriterTest.HandlesKnownIssues (0 ms) +7: [----------] 7 tests from CommandLineHelpWriterTest (0 ms total) 7: 7: [----------] 6 tests from CommandLineModuleManagerTest 7: [ RUN ] CommandLineModuleManagerTest.RunsModule @@ -56295,7 +56228,7 @@ 7: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 7: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions 7: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms) -7: [----------] 13 tests from CommandLineParserTest (1 ms total) +7: [----------] 13 tests from CommandLineParserTest (0 ms total) 7: 7: [----------] 6 tests from CommandLineProgramContextTest 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath @@ -56347,7 +56280,7 @@ 7: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName 7: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (0 ms) 7: [ RUN ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension -7: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (1 ms) +7: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (0 ms) 7: [ RUN ] ParseCommonArgsTest.HandlesNonExistentInputFiles 7: [ OK ] ParseCommonArgsTest.HandlesNonExistentInputFiles (0 ms) 7: [ RUN ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles @@ -56359,17 +56292,17 @@ 7: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension 7: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile -7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) +7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (0 ms) 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName 7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (0 ms) 7: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 7: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) -7: [----------] 21 tests from ParseCommonArgsTest (2 ms total) +7: [----------] 21 tests from ParseCommonArgsTest (0 ms total) 7: 7: [----------] Global test environment tear-down -7: [==========] 59 tests from 7 test cases ran. (9 ms total) +7: [==========] 59 tests from 7 test cases ran. (7 ms total) 7: [ PASSED ] 59 tests. - 7/54 Test #7: CommandLineUnitTests ................ Passed 0.03 sec + 7/54 Test #7: CommandLineUnitTests ................ Passed 0.02 sec test 8 Start 8: DomDecTests @@ -56402,9 +56335,9 @@ 8: [----------] 2 tests from LocalAtomSetManager (0 ms total) 8: 8: [----------] Global test environment tear-down -8: [==========] 9 tests from 2 test cases ran. (1 ms total) +8: [==========] 9 tests from 2 test cases ran. (0 ms total) 8: [ PASSED ] 9 tests. - 8/54 Test #8: DomDecTests ......................... Passed 0.02 sec + 8/54 Test #8: DomDecTests ......................... Passed 0.03 sec test 9 Start 9: EwaldUnitTests @@ -56414,67 +56347,67 @@ 9: [----------] Global test environment set-up. 9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (1 ms) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (1 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (4 ms) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (10 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) -9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (5 ms total) +9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (11 ms total) 9: 9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (4 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (7 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (3 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (9 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (3 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (3 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (0 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (3 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (11 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (6 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (0 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (3 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (9 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (3 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (1 ms) -9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (45 ms total) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (0 ms) +9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (56 ms total) 9: 9: [----------] 144 tests from SaneInput/PmeGatherTest 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 @@ -56500,11 +56433,11 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 @@ -56516,9 +56449,9 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 @@ -56530,17 +56463,17 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 @@ -56566,13 +56499,13 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 @@ -56580,17 +56513,17 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (8 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 @@ -56602,9 +56535,9 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 @@ -56616,11 +56549,11 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 @@ -56630,31 +56563,31 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (8 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 @@ -56682,11 +56615,11 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 @@ -56694,7 +56627,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 @@ -56704,13 +56637,13 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 @@ -56750,95 +56683,95 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (0 ms) -9: [----------] 144 tests from SaneInput/PmeGatherTest (23 ms total) +9: [----------] 144 tests from SaneInput/PmeGatherTest (33 ms total) 9: 9: [----------] 16 tests from SaneInput/PmeSolveTest 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (8 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (4 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (0 ms) -9: [----------] 16 tests from SaneInput/PmeSolveTest (8 ms total) +9: [----------] 16 tests from SaneInput/PmeSolveTest (19 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (8 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (0 ms) -9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (3 ms total) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) +9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (11 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (0 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (0 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (0 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (0 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (0 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (0 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (5 ms total) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (0 ms) +9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (3 ms total) 9: 9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 @@ -56846,120 +56779,120 @@ 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (9 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (0 ms) -9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (6 ms total) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) +9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (14 ms total) 9: 9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (0 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (0 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (5 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (0 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (0 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (0 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (0 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (0 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (8 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (0 ms) -9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (7 ms total) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (1 ms) +9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (19 ms total) 9: 9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (0 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (0 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (0 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (0 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (0 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (0 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (0 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (0 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (0 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (9 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (1 ms) -9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (8 ms total) +9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (16 ms total) 9: 9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (5 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (10 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (6 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (10 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) -9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (24 ms total) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) +9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (57 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 257 tests from 10 test cases ran. (149 ms total) +9: [==========] 257 tests from 10 test cases ran. (288 ms total) 9: [ PASSED ] 257 tests. - 9/54 Test #9: EwaldUnitTests ...................... Passed 0.19 sec + 9/54 Test #9: EwaldUnitTests ...................... Passed 0.35 sec test 10 Start 10: FFTUnitTests @@ -56969,48 +56902,48 @@ 10: [----------] Global test environment set-up. 10: [----------] 2 tests from ManyFFTTest 10: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (5 ms) +10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (2 ms) 10: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (8 ms) +10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (11 ms) 10: [----------] 2 tests from ManyFFTTest (13 ms total) 10: 10: [----------] 1 test from FFTTest 10: [ RUN ] FFTTest.Real2DLength18_15Test -10: [ OK ] FFTTest.Real2DLength18_15Test (3 ms) -10: [----------] 1 test from FFTTest (3 ms total) +10: [ OK ] FFTTest.Real2DLength18_15Test (1 ms) +10: [----------] 1 test from FFTTest (1 ms total) 10: 10: [----------] 1 test from FFFTest3D 10: [ RUN ] FFFTest3D.Real5_6_9 -10: [ OK ] FFFTest3D.Real5_6_9 (2 ms) -10: [----------] 1 test from FFFTest3D (2 ms total) +10: [ OK ] FFFTest3D.Real5_6_9 (1 ms) +10: [----------] 1 test from FFFTest3D (1 ms total) 10: 10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (0 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (2 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (5 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (0 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (5 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (7 ms) -10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (18 ms total) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (11 ms) +10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (19 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 14 tests from 4 test cases ran. (37 ms total) +10: [==========] 14 tests from 4 test cases ran. (34 ms total) 10: [ PASSED ] 14 tests. -10/54 Test #10: FFTUnitTests ........................ Passed 0.05 sec +10/54 Test #10: FFTUnitTests ........................ Passed 0.06 sec test 11 Start 11: GpuUtilsUnitTests @@ -57075,10 +57008,10 @@ 11: [ RUN ] HostAllocatorTestCopyable/2.VectorsWithDefaultHostAllocatorAlwaysWorks 11: [ OK ] HostAllocatorTestCopyable/2.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 11: [ RUN ] HostAllocatorTestCopyable/2.TransfersWithoutPinningWork -11: [ OK ] HostAllocatorTestCopyable/2.TransfersWithoutPinningWork (1 ms) +11: [ OK ] HostAllocatorTestCopyable/2.TransfersWithoutPinningWork (0 ms) 11: [ RUN ] HostAllocatorTestCopyable/2.FillInputAlsoWorksAfterCallingReserve 11: [ OK ] HostAllocatorTestCopyable/2.FillInputAlsoWorksAfterCallingReserve (0 ms) -11: [----------] 3 tests from HostAllocatorTestCopyable/2 (1 ms total) +11: [----------] 3 tests from HostAllocatorTestCopyable/2 (0 ms total) 11: 11: [----------] 5 tests from HostAllocatorTestNoMem/0, where TypeParam = int 11: [ RUN ] HostAllocatorTestNoMem/0.CreateVector @@ -57184,12 +57117,12 @@ 11: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 11: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 11: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment -11: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (1 ms) +11: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 11: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 11: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 11: [ RUN ] AllocatorTest/2.Move 11: [ OK ] AllocatorTest/2.Move (0 ms) -11: [----------] 4 tests from AllocatorTest/2 (1 ms total) +11: [----------] 4 tests from AllocatorTest/2 (0 ms total) 11: 11: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 11: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment @@ -57203,7 +57136,7 @@ 11: [----------] 4 tests from AllocatorTest/3 (0 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 62 tests from 20 test cases ran. (2 ms total) +11: [==========] 62 tests from 20 test cases ran. (0 ms total) 11: [ PASSED ] 62 tests. 11/54 Test #11: GpuUtilsUnitTests ................... Passed 0.04 sec test 12 @@ -57215,19 +57148,19 @@ 12: [----------] Global test environment set-up. 12: [----------] 4 tests from HardwareTopologyTest 12: [ RUN ] HardwareTopologyTest.Execute -12: [ OK ] HardwareTopologyTest.Execute (14 ms) +12: [ OK ] HardwareTopologyTest.Execute (15 ms) 12: [ RUN ] HardwareTopologyTest.HwlocExecute -12: [ OK ] HardwareTopologyTest.HwlocExecute (13 ms) +12: [ OK ] HardwareTopologyTest.HwlocExecute (15 ms) 12: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency -12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (13 ms) +12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (15 ms) 12: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (10 ms) -12: [----------] 4 tests from HardwareTopologyTest (50 ms total) +12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (14 ms) +12: [----------] 4 tests from HardwareTopologyTest (59 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 4 tests from 1 test case ran. (50 ms total) +12: [==========] 4 tests from 1 test case ran. (63 ms total) 12: [ PASSED ] 4 tests. -12/54 Test #12: HardwareUnitTests ................... Passed 0.07 sec +12/54 Test #12: HardwareUnitTests ................... Passed 0.09 sec test 13 Start 13: MathUnitTests @@ -57280,9 +57213,9 @@ 13: [ RUN ] TranslateAndScaleTest.scalingNonTrivial 13: [ OK ] TranslateAndScaleTest.scalingNonTrivial (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingInverseNoZero -13: [ OK ] TranslateAndScaleTest.scalingInverseNoZero (1 ms) +13: [ OK ] TranslateAndScaleTest.scalingInverseNoZero (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingInverseWithOneScaleDimensionZero -13: [ OK ] TranslateAndScaleTest.scalingInverseWithOneScaleDimensionZero (0 ms) +13: [ OK ] TranslateAndScaleTest.scalingInverseWithOneScaleDimensionZero (1 ms) 13: [----------] 8 tests from TranslateAndScaleTest (1 ms total) 13: 13: [----------] 12 tests from DensitySimilarityTest @@ -57303,14 +57236,14 @@ 13: [ RUN ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect 13: [ OK ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect (0 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsOne -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (33 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (28 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (24 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (32 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (18 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (23 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect 13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect (0 ms) -13: [----------] 12 tests from DensitySimilarityTest (75 ms total) +13: [----------] 12 tests from DensitySimilarityTest (84 ms total) 13: 13: [----------] 6 tests from StructureSimilarityTest 13: [ RUN ] StructureSimilarityTest.StructureComparedToSelfHasZeroRMSD @@ -57368,7 +57301,7 @@ 13: [ RUN ] FunctionTest.InvcbrtInteger 13: [ OK ] FunctionTest.InvcbrtInteger (0 ms) 13: [ RUN ] FunctionTest.SixthrootFloat -13: [ OK ] FunctionTest.SixthrootFloat (1 ms) +13: [ OK ] FunctionTest.SixthrootFloat (0 ms) 13: [ RUN ] FunctionTest.SixthrootDouble 13: [ OK ] FunctionTest.SixthrootDouble (0 ms) 13: [ RUN ] FunctionTest.SixthrootInteger @@ -57384,7 +57317,7 @@ 13: [ RUN ] FunctionTest.ErfInvFloat 13: [ OK ] FunctionTest.ErfInvFloat (0 ms) 13: [ RUN ] FunctionTest.ErfInvDouble -13: [ OK ] FunctionTest.ErfInvDouble (0 ms) +13: [ OK ] FunctionTest.ErfInvDouble (1 ms) 13: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 13: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 13: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble @@ -57477,7 +57410,7 @@ 13: [ OK ] MatrixTest.canCreateFromLegacyMatrix (0 ms) 13: [ RUN ] MatrixTest.canFillLegacyMatrix 13: [ OK ] MatrixTest.canFillLegacyMatrix (0 ms) -13: [----------] 15 tests from MatrixTest (1 ms total) +13: [----------] 15 tests from MatrixTest (0 ms total) 13: 13: [----------] 25 tests from MultiDimArrayTest 13: [ RUN ] MultiDimArrayTest.canConstructAndFillStatic @@ -57651,7 +57584,7 @@ 13: [ OK ] PaddedVectorTest/9.CanMoveAssign (0 ms) 13: [ RUN ] PaddedVectorTest/9.CanSwap 13: [ OK ] PaddedVectorTest/9.CanSwap (0 ms) -13: [----------] 4 tests from PaddedVectorTest/9 (0 ms total) +13: [----------] 4 tests from PaddedVectorTest/9 (1 ms total) 13: 13: [----------] 37 tests from RVecTest 13: [ RUN ] RVecTest.CanBeStoredInVector @@ -57731,7 +57664,7 @@ 13: [----------] 37 tests from RVecTest (0 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 204 tests from 29 test cases ran. (78 ms total) +13: [==========] 204 tests from 29 test cases ran. (87 ms total) 13: [ PASSED ] 204 tests. 13/54 Test #13: MathUnitTests ....................... Passed 0.13 sec test 14 @@ -57749,7 +57682,7 @@ 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads 14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads -14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (1 ms) +14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads 14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware @@ -57757,11 +57690,11 @@ 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 14: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset -14: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (0 ms) +14: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (1 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 14: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto -14: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (1 ms) +14: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced 14: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced @@ -57770,20 +57703,20 @@ 14: NOTE: Affinity setting failed. 14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto -14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (1 ms) +14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (15 ms) 14: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced -14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (0 ms) +14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (8 ms) 14: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads -14: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (1 ms) +14: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (8 ms) 14: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 14: NOTE: Affinity setting for 1/2 threads failed. -14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (0 ms) -14: [----------] 17 tests from ThreadAffinityTest (4 ms total) +14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (4 ms) +14: [----------] 17 tests from ThreadAffinityTest (36 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 17 tests from 1 test case ran. (4 ms total) +14: [==========] 17 tests from 1 test case ran. (36 ms total) 14: [ PASSED ] 17 tests. -14/54 Test #14: MdrunUtilityUnitTests ............... Passed 0.02 sec +14/54 Test #14: MdrunUtilityUnitTests ............... Passed 0.07 sec test 15 Start 15: MdrunUtilityMpiUnitTests @@ -57793,40 +57726,40 @@ 15: [----------] Global test environment set-up. 15: [----------] 6 tests from ThreadAffinityMultiRankTest 15: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode -15: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (4 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (80 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride -15: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (13 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (148 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes -15: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (2 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (64 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled -15: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (24 ms) +15: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (56 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto -15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (32 ms) +15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (96 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce -15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (34 ms) -15: [----------] 6 tests from ThreadAffinityMultiRankTest (109 ms total) +15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (80 ms) +15: [----------] 6 tests from ThreadAffinityMultiRankTest (524 ms total) 15: 15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (10 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (88 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (12 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (80 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (9 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (100 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (3 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (92 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (41 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (68 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (42 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (116 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (2 ms) -15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (120 ms total) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (84 ms) +15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (628 ms total) 15: 15: [----------] Global test environment tear-down -15: [==========] 13 tests from 2 test cases ran. (230 ms total) +15: [==========] 13 tests from 2 test cases ran. (1152 ms total) 15: [ PASSED ] 13 tests. -15/54 Test #15: MdrunUtilityMpiUnitTests ............ Passed 0.25 sec +15/54 Test #15: MdrunUtilityMpiUnitTests ............ Passed 1.18 sec test 16 Start 16: MDSpanTests @@ -57849,12 +57782,12 @@ 16: [ RUN ] ExtentsTest.Construction 16: [ OK ] ExtentsTest.Construction (0 ms) 16: [ RUN ] ExtentsTest.PurelyStatic -16: [ OK ] ExtentsTest.PurelyStatic (0 ms) +16: [ OK ] ExtentsTest.PurelyStatic (1 ms) 16: [ RUN ] ExtentsTest.RankNought 16: [ OK ] ExtentsTest.RankNought (0 ms) 16: [ RUN ] ExtentsTest.Assignment 16: [ OK ] ExtentsTest.Assignment (0 ms) -16: [----------] 4 tests from ExtentsTest (0 ms total) +16: [----------] 4 tests from ExtentsTest (1 ms total) 16: 16: [----------] 8 tests from MdSpanExtension 16: [ RUN ] MdSpanExtension.SlicingAllStatic @@ -57917,12 +57850,12 @@ 16: [ OK ] MdSpanTest/1.Properties (0 ms) 16: [ RUN ] MdSpanTest/1.Operator 16: [ OK ] MdSpanTest/1.Operator (0 ms) -16: [----------] 6 tests from MdSpanTest/1 (1 ms total) +16: [----------] 6 tests from MdSpanTest/1 (0 ms total) 16: 16: [----------] Global test environment tear-down 16: [==========] 32 tests from 7 test cases ran. (1 ms total) 16: [ PASSED ] 32 tests. -16/54 Test #16: MDSpanTests ......................... Passed 0.02 sec +16/54 Test #16: MDSpanTests ......................... Passed 0.04 sec test 17 Start 17: OnlineHelpUnitTests @@ -57932,18 +57865,18 @@ 17: [----------] Global test environment set-up. 17: [----------] 6 tests from TextTableFormatterTest 17: [ RUN ] TextTableFormatterTest.HandlesBasicCase -17: [ OK ] TextTableFormatterTest.HandlesBasicCase (0 ms) +17: [ OK ] TextTableFormatterTest.HandlesBasicCase (8 ms) 17: [ RUN ] TextTableFormatterTest.HandlesEmptyColumnTitles 17: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (0 ms) 17: [ RUN ] TextTableFormatterTest.HandlesIndentation -17: [ OK ] TextTableFormatterTest.HandlesIndentation (1 ms) +17: [ OK ] TextTableFormatterTest.HandlesIndentation (0 ms) 17: [ RUN ] TextTableFormatterTest.HandlesOverflowingLines 17: [ OK ] TextTableFormatterTest.HandlesOverflowingLines (0 ms) 17: [ RUN ] TextTableFormatterTest.HandlesLastColumnFolding 17: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 17: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns 17: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) -17: [----------] 6 tests from TextTableFormatterTest (1 ms total) +17: [----------] 6 tests from TextTableFormatterTest (8 ms total) 17: 17: [----------] 3 tests from HelpManagerTest 17: [ RUN ] HelpManagerTest.HandlesRootTopic @@ -57952,7 +57885,7 @@ 17: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 17: [ RUN ] HelpManagerTest.HandlesInvalidTopics 17: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) -17: [----------] 3 tests from HelpManagerTest (0 ms total) +17: [----------] 3 tests from HelpManagerTest (1 ms total) 17: 17: [----------] 2 tests from HelpTopicFormattingTest 17: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic @@ -57963,7 +57896,7 @@ 17: 17: [----------] 11 tests from HelpWriterContextTest 17: [ RUN ] HelpWriterContextTest.FormatsParagraphs -17: [ OK ] HelpWriterContextTest.FormatsParagraphs (1 ms) +17: [ OK ] HelpWriterContextTest.FormatsParagraphs (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsRstStyleParagraphs 17: [ OK ] HelpWriterContextTest.FormatsRstStyleParagraphs (0 ms) 17: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace @@ -57984,12 +57917,12 @@ 17: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsTitles 17: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms) -17: [----------] 11 tests from HelpWriterContextTest (1 ms total) +17: [----------] 11 tests from HelpWriterContextTest (0 ms total) 17: 17: [----------] Global test environment tear-down -17: [==========] 22 tests from 4 test cases ran. (2 ms total) +17: [==========] 22 tests from 4 test cases ran. (9 ms total) 17: [ PASSED ] 22 tests. -17/54 Test #17: OnlineHelpUnitTests ................. Passed 0.02 sec +17/54 Test #17: OnlineHelpUnitTests ................. Passed 0.04 sec test 18 Start 18: OptionsUnitTests @@ -58007,8 +57940,8 @@ 18: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition 18: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (0 ms) 18: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues -18: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (1 ms) -18: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) +18: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) +18: [----------] 5 tests from AbstractOptionStorageTest (0 ms total) 18: 18: [----------] 8 tests from FileNameOptionTest 18: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension @@ -58039,11 +57972,11 @@ 18: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile 18: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (0 ms) 18: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile -18: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile (0 ms) +18: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile (1 ms) 18: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile 18: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile (0 ms) 18: [ RUN ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified -18: [ OK ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified (1 ms) +18: [ OK ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified (0 ms) 18: [ RUN ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified 18: [ OK ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified (0 ms) 18: [ RUN ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified @@ -58103,7 +58036,7 @@ 18: [ RUN ] OptionsAssignerIntegerTest.StoresSingleValue 18: [ OK ] OptionsAssignerIntegerTest.StoresSingleValue (0 ms) 18: [ RUN ] OptionsAssignerIntegerTest.HandlesEmptyValue -18: [ OK ] OptionsAssignerIntegerTest.HandlesEmptyValue (1 ms) +18: [ OK ] OptionsAssignerIntegerTest.HandlesEmptyValue (0 ms) 18: [ RUN ] OptionsAssignerIntegerTest.HandlesInvalidValue 18: [ OK ] OptionsAssignerIntegerTest.HandlesInvalidValue (0 ms) 18: [ RUN ] OptionsAssignerIntegerTest.HandlesOverflow @@ -58126,7 +58059,7 @@ 18: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 18: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment 18: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms) -18: [----------] 13 tests from OptionsAssignerIntegerTest (1 ms total) +18: [----------] 13 tests from OptionsAssignerIntegerTest (0 ms total) 18: 18: [----------] 5 tests from OptionsAssignerDoubleTest 18: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue @@ -58187,14 +58120,14 @@ 18: [ RUN ] RepeatingOptionSectionTest.HandlesDefaultValue 18: [ OK ] RepeatingOptionSectionTest.HandlesDefaultValue (0 ms) 18: [ RUN ] RepeatingOptionSectionTest.HandlesTwoInstances -18: [ OK ] RepeatingOptionSectionTest.HandlesTwoInstances (1 ms) +18: [ OK ] RepeatingOptionSectionTest.HandlesTwoInstances (0 ms) 18: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault 18: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault (0 ms) 18: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault 18: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (0 ms) 18: [ RUN ] RepeatingOptionSectionTest.HandlesNestedSections 18: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (0 ms) -18: [----------] 8 tests from RepeatingOptionSectionTest (1 ms total) +18: [----------] 8 tests from RepeatingOptionSectionTest (0 ms total) 18: 18: [----------] 1 test from TimeUnitManagerTest 18: [ RUN ] TimeUnitManagerTest.BasicOperations @@ -58216,8 +58149,8 @@ 18: [ RUN ] TreeValueSupportAssignTest.AssignsFromTree 18: [ OK ] TreeValueSupportAssignTest.AssignsFromTree (0 ms) 18: [ RUN ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays -18: [ OK ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays (0 ms) -18: [----------] 2 tests from TreeValueSupportAssignTest (0 ms total) +18: [ OK ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays (1 ms) +18: [----------] 2 tests from TreeValueSupportAssignTest (1 ms total) 18: 18: [----------] 1 test from TreeValueSupportAssignErrorTest 18: [ RUN ] TreeValueSupportAssignErrorTest.HandlesInvalidValue @@ -58241,7 +58174,7 @@ 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues 18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues -18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (1 ms) +18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues 18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues @@ -58250,7 +58183,7 @@ 18: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.OrdersValues 18: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) -18: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total) +18: [----------] 6 tests from TreeValueSupportAdjustTest (0 ms total) 18: 18: [----------] 8 tests from TreeValueSupportTest 18: [ RUN ] TreeValueSupportTest.SupportsBooleanOption @@ -58262,19 +58195,19 @@ 18: [ RUN ] TreeValueSupportTest.SupportsStringOption 18: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsFloatOption -18: [ OK ] TreeValueSupportTest.SupportsFloatOption (1 ms) +18: [ OK ] TreeValueSupportTest.SupportsFloatOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsDoubleOption 18: [ OK ] TreeValueSupportTest.SupportsDoubleOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption 18: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsEnumOption 18: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) -18: [----------] 8 tests from TreeValueSupportTest (1 ms total) +18: [----------] 8 tests from TreeValueSupportTest (0 ms total) 18: 18: [----------] Global test environment tear-down -18: [==========] 110 tests from 18 test cases ran. (6 ms total) +18: [==========] 110 tests from 18 test cases ran. (2 ms total) 18: [ PASSED ] 110 tests. -18/54 Test #18: OptionsUnitTests .................... Passed 0.03 sec +18/54 Test #18: OptionsUnitTests .................... Passed 0.05 sec test 19 Start 19: PbcutilUnitTest @@ -58284,8 +58217,8 @@ 19: [----------] Global test environment set-up. 19: [----------] 1 test from PbcTest 19: [ RUN ] PbcTest.CalcShiftsWorks -19: [ OK ] PbcTest.CalcShiftsWorks (1 ms) -19: [----------] 1 test from PbcTest (1 ms total) +19: [ OK ] PbcTest.CalcShiftsWorks (0 ms) +19: [----------] 1 test from PbcTest (0 ms total) 19: 19: [----------] 2 tests from PbcEnumsTest 19: [ RUN ] PbcEnumsTest.CenteringTypeNamesAreCorrect @@ -58295,9 +58228,9 @@ 19: [----------] 2 tests from PbcEnumsTest (0 ms total) 19: 19: [----------] Global test environment tear-down -19: [==========] 3 tests from 2 test cases ran. (1 ms total) +19: [==========] 3 tests from 2 test cases ran. (0 ms total) 19: [ PASSED ] 3 tests. -19/54 Test #19: PbcutilUnitTest ..................... Passed 0.01 sec +19/54 Test #19: PbcutilUnitTest ..................... Passed 0.03 sec test 20 Start 20: RandomUnitTests @@ -58314,7 +58247,7 @@ 20: [ OK ] ExponentialDistributionTest.Reset (0 ms) 20: [ RUN ] ExponentialDistributionTest.AltParam 20: [ OK ] ExponentialDistributionTest.AltParam (0 ms) -20: [----------] 4 tests from ExponentialDistributionTest (0 ms total) +20: [----------] 4 tests from ExponentialDistributionTest (1 ms total) 20: 20: [----------] 4 tests from GammaDistributionTest 20: [ RUN ] GammaDistributionTest.Output @@ -58356,12 +58289,12 @@ 20: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms) 20: [ RUN ] TabulatedNormalDistributionTest.AltParam 20: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms) -20: [----------] 6 tests from TabulatedNormalDistributionTest (1 ms total) +20: [----------] 6 tests from TabulatedNormalDistributionTest (0 ms total) 20: 20: [----------] 1 test from TabulatedNormalDistributionTableTest 20: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties -20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (1 ms) -20: [----------] 1 test from TabulatedNormalDistributionTableTest (1 ms total) +20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (0 ms) +20: [----------] 1 test from TabulatedNormalDistributionTableTest (0 ms total) 20: 20: [----------] 6 tests from ThreeFry2x64Test 20: [ RUN ] ThreeFry2x64Test.Logical @@ -58373,7 +58306,7 @@ 20: [ RUN ] ThreeFry2x64Test.Discard 20: [ OK ] ThreeFry2x64Test.Discard (0 ms) 20: [ RUN ] ThreeFry2x64Test.InvalidCounter -20: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms) +20: [ OK ] ThreeFry2x64Test.InvalidCounter (1 ms) 20: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter 20: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms) 20: [----------] 6 tests from ThreeFry2x64Test (1 ms total) @@ -58412,7 +58345,7 @@ 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 -20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (1 ms) +20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 @@ -58421,12 +58354,12 @@ 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms) -20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) +20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (0 ms total) 20: 20: [----------] Global test environment tear-down -20: [==========] 44 tests from 10 test cases ran. (4 ms total) +20: [==========] 44 tests from 10 test cases ran. (2 ms total) 20: [ PASSED ] 44 tests. -20/54 Test #20: RandomUnitTests ..................... Passed 0.03 sec +20/54 Test #20: RandomUnitTests ..................... Passed 0.04 sec test 21 Start 21: RestraintTests @@ -58442,7 +58375,7 @@ 21: [----------] Global test environment tear-down 21: [==========] 1 test from 1 test case ran. (0 ms total) 21: [ PASSED ] 1 test. -21/54 Test #21: RestraintTests ...................... Passed 0.02 sec +21/54 Test #21: RestraintTests ...................... Passed 0.03 sec test 22 Start 22: TableUnitTests @@ -58454,52 +58387,52 @@ 22: [ RUN ] SplineTableTest/0.HandlesIncorrectInput 22: [ OK ] SplineTableTest/0.HandlesIncorrectInput (1 ms) 22: [ RUN ] SplineTableTest/0.Sinc -22: [ OK ] SplineTableTest/0.Sinc (1 ms) +22: [ OK ] SplineTableTest/0.Sinc (0 ms) 22: [ RUN ] SplineTableTest/0.LJ12 -22: [ OK ] SplineTableTest/0.LJ12 (15 ms) +22: [ OK ] SplineTableTest/0.LJ12 (11 ms) 22: [ RUN ] SplineTableTest/0.PmeCorrection -22: [ OK ] SplineTableTest/0.PmeCorrection (1 ms) +22: [ OK ] SplineTableTest/0.PmeCorrection (0 ms) 22: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput -22: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms) +22: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (4 ms) 22: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr -22: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (0 ms) +22: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (1 ms) 22: [ RUN ] SplineTableTest/0.TwoFunctions -22: [ OK ] SplineTableTest/0.TwoFunctions (22 ms) +22: [ OK ] SplineTableTest/0.TwoFunctions (18 ms) 22: [ RUN ] SplineTableTest/0.ThreeFunctions -22: [ OK ] SplineTableTest/0.ThreeFunctions (18 ms) +22: [ OK ] SplineTableTest/0.ThreeFunctions (27 ms) 22: [ RUN ] SplineTableTest/0.Simd -22: [ OK ] SplineTableTest/0.Simd (3 ms) +22: [ OK ] SplineTableTest/0.Simd (10 ms) 22: [ RUN ] SplineTableTest/0.SimdTwoFunctions -22: [ OK ] SplineTableTest/0.SimdTwoFunctions (13 ms) -22: [----------] 10 tests from SplineTableTest/0 (75 ms total) +22: [ OK ] SplineTableTest/0.SimdTwoFunctions (22 ms) +22: [----------] 10 tests from SplineTableTest/0 (94 ms total) 22: 22: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 22: [ RUN ] SplineTableTest/1.HandlesIncorrectInput 22: [ OK ] SplineTableTest/1.HandlesIncorrectInput (1 ms) 22: [ RUN ] SplineTableTest/1.Sinc -22: [ OK ] SplineTableTest/1.Sinc (1 ms) +22: [ OK ] SplineTableTest/1.Sinc (0 ms) 22: [ RUN ] SplineTableTest/1.LJ12 -22: [ OK ] SplineTableTest/1.LJ12 (15 ms) +22: [ OK ] SplineTableTest/1.LJ12 (25 ms) 22: [ RUN ] SplineTableTest/1.PmeCorrection -22: [ OK ] SplineTableTest/1.PmeCorrection (1 ms) +22: [ OK ] SplineTableTest/1.PmeCorrection (8 ms) 22: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput -22: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (0 ms) +22: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) 22: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr 22: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (0 ms) 22: [ RUN ] SplineTableTest/1.TwoFunctions -22: [ OK ] SplineTableTest/1.TwoFunctions (27 ms) +22: [ OK ] SplineTableTest/1.TwoFunctions (53 ms) 22: [ RUN ] SplineTableTest/1.ThreeFunctions -22: [ OK ] SplineTableTest/1.ThreeFunctions (29 ms) +22: [ OK ] SplineTableTest/1.ThreeFunctions (65 ms) 22: [ RUN ] SplineTableTest/1.Simd -22: [ OK ] SplineTableTest/1.Simd (5 ms) +22: [ OK ] SplineTableTest/1.Simd (9 ms) 22: [ RUN ] SplineTableTest/1.SimdTwoFunctions -22: [ OK ] SplineTableTest/1.SimdTwoFunctions (22 ms) -22: [----------] 10 tests from SplineTableTest/1 (102 ms total) +22: [ OK ] SplineTableTest/1.SimdTwoFunctions (51 ms) +22: [----------] 10 tests from SplineTableTest/1 (213 ms total) 22: 22: [----------] Global test environment tear-down -22: [==========] 20 tests from 2 test cases ran. (177 ms total) +22: [==========] 20 tests from 2 test cases ran. (307 ms total) 22: [ PASSED ] 20 tests. -22/54 Test #22: TableUnitTests ...................... Passed 0.20 sec +22/54 Test #22: TableUnitTests ...................... Passed 0.35 sec test 23 Start 23: TaskAssignmentUnitTests @@ -58509,10 +58442,10 @@ 23: [----------] Global test environment set-up. 23: [----------] 2 tests from UserTaskAssignmentStringHandlingTest 23: [ RUN ] UserTaskAssignmentStringHandlingTest.ParsingAndReconstructionWork -23: [ OK ] UserTaskAssignmentStringHandlingTest.ParsingAndReconstructionWork (0 ms) +23: [ OK ] UserTaskAssignmentStringHandlingTest.ParsingAndReconstructionWork (8 ms) 23: [ RUN ] UserTaskAssignmentStringHandlingTest.EmptyStringCanBeValid 23: [ OK ] UserTaskAssignmentStringHandlingTest.EmptyStringCanBeValid (0 ms) -23: [----------] 2 tests from UserTaskAssignmentStringHandlingTest (0 ms total) +23: [----------] 2 tests from UserTaskAssignmentStringHandlingTest (8 ms total) 23: 23: [----------] 1 test from GpuIdAndAssignmentStringHandlingTest 23: [ RUN ] GpuIdAndAssignmentStringHandlingTest.InvalidInputsThrow @@ -58520,9 +58453,9 @@ 23: [----------] 1 test from GpuIdAndAssignmentStringHandlingTest (1 ms total) 23: 23: [----------] Global test environment tear-down -23: [==========] 3 tests from 2 test cases ran. (1 ms total) +23: [==========] 3 tests from 2 test cases ran. (9 ms total) 23: [ PASSED ] 3 tests. -23/54 Test #23: TaskAssignmentUnitTests ............. Passed 0.02 sec +23/54 Test #23: TaskAssignmentUnitTests ............. Passed 0.03 sec test 24 Start 24: TopologyTest @@ -58562,9 +58495,9 @@ 24: [----------] 6 tests from SymtabTest (0 ms total) 24: 24: [----------] Global test environment tear-down -24: [==========] 11 tests from 3 test cases ran. (0 ms total) +24: [==========] 11 tests from 3 test cases ran. (8 ms total) 24: [ PASSED ] 11 tests. -24/54 Test #24: TopologyTest ........................ Passed 0.01 sec +24/54 Test #24: TopologyTest ........................ Passed 0.03 sec test 25 Start 25: PullTest @@ -58583,12 +58516,12 @@ 25: [ OK ] PullTest.MaxPullDistanceXyzLongBox (0 ms) 25: [ RUN ] PullTest.MaxPullDistanceXySkewedBox 25: [ OK ] PullTest.MaxPullDistanceXySkewedBox (0 ms) -25: [----------] 5 tests from PullTest (0 ms total) +25: [----------] 5 tests from PullTest (4 ms total) 25: 25: [----------] Global test environment tear-down -25: [==========] 5 tests from 1 test case ran. (1 ms total) +25: [==========] 5 tests from 1 test case ran. (4 ms total) 25: [ PASSED ] 5 tests. -25/54 Test #25: PullTest ............................ Passed 0.02 sec +25/54 Test #25: PullTest ............................ Passed 0.03 sec test 26 Start 26: AwhTest @@ -58603,8 +58536,8 @@ 26: 26: [----------] 1 test from gridTest 26: [ RUN ] gridTest.neighborhood -26: [ OK ] gridTest.neighborhood (2 ms) -26: [----------] 1 test from gridTest (2 ms total) +26: [ OK ] gridTest.neighborhood (0 ms) +26: [----------] 1 test from gridTest (0 ms total) 26: 26: [----------] 8 tests from WithParameters/BiasTest 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 @@ -58612,30 +58545,30 @@ 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (1 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (1 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (0 ms) -26: [----------] 8 tests from WithParameters/BiasTest (4 ms total) +26: [----------] 8 tests from WithParameters/BiasTest (2 ms total) 26: 26: [----------] 2 tests from WithParameters/BiasStateTest 26: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (0 ms) 26: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1 -26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (1 ms) -26: [----------] 2 tests from WithParameters/BiasStateTest (1 ms total) +26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (0 ms) +26: [----------] 2 tests from WithParameters/BiasStateTest (0 ms total) 26: 26: [----------] Global test environment tear-down -26: [==========] 12 tests from 4 test cases ran. (8 ms total) +26: [==========] 12 tests from 4 test cases ran. (3 ms total) 26: [ PASSED ] 12 tests. -26/54 Test #26: AwhTest ............................. Passed 0.02 sec +26/54 Test #26: AwhTest ............................. Passed 0.03 sec test 27 Start 27: SimdUnitTests @@ -58777,7 +58710,7 @@ 27: [ OK ] SimdFloatingpointUtilTest.gatherLoadUBySimdIntTranspose2 (0 ms) 27: [ RUN ] SimdFloatingpointUtilTest.reduceIncr4Sum 27: [ OK ] SimdFloatingpointUtilTest.reduceIncr4Sum (0 ms) -27: [----------] 13 tests from SimdFloatingpointUtilTest (1 ms total) +27: [----------] 13 tests from SimdFloatingpointUtilTest (0 ms total) 27: 27: [----------] 3 tests from SimdVectorOperationsTest 27: [ RUN ] SimdVectorOperationsTest.iprod @@ -58790,111 +58723,111 @@ 27: 27: [----------] 56 tests from SimdMathTest 27: [ RUN ] SimdMathTest.generateTestPointsDouble -27: [ OK ] SimdMathTest.generateTestPointsDouble (0 ms) +27: [ OK ] SimdMathTest.generateTestPointsDouble (1 ms) 27: [ RUN ] SimdMathTest.copysign 27: [ OK ] SimdMathTest.copysign (0 ms) 27: [ RUN ] SimdMathTest.invsqrt -27: [ OK ] SimdMathTest.invsqrt (1 ms) +27: [ OK ] SimdMathTest.invsqrt (0 ms) 27: [ RUN ] SimdMathTest.maskzInvsqrt 27: [ OK ] SimdMathTest.maskzInvsqrt (0 ms) 27: [ RUN ] SimdMathTest.invsqrtPair -27: [ OK ] SimdMathTest.invsqrtPair (2 ms) +27: [ OK ] SimdMathTest.invsqrtPair (0 ms) 27: [ RUN ] SimdMathTest.sqrt -27: [ OK ] SimdMathTest.sqrt (2 ms) +27: [ OK ] SimdMathTest.sqrt (1 ms) 27: [ RUN ] SimdMathTest.sqrtUnsafe 27: [ OK ] SimdMathTest.sqrtUnsafe (0 ms) 27: [ RUN ] SimdMathTest.inv -27: [ OK ] SimdMathTest.inv (3 ms) +27: [ OK ] SimdMathTest.inv (9 ms) 27: [ RUN ] SimdMathTest.maskzInv 27: [ OK ] SimdMathTest.maskzInv (0 ms) 27: [ RUN ] SimdMathTest.cbrt 27: [ OK ] SimdMathTest.cbrt (1 ms) 27: [ RUN ] SimdMathTest.invcbrt -27: [ OK ] SimdMathTest.invcbrt (3 ms) +27: [ OK ] SimdMathTest.invcbrt (1 ms) 27: [ RUN ] SimdMathTest.log2 -27: [ OK ] SimdMathTest.log2 (1 ms) +27: [ OK ] SimdMathTest.log2 (0 ms) 27: [ RUN ] SimdMathTest.log -27: [ OK ] SimdMathTest.log (1 ms) +27: [ OK ] SimdMathTest.log (0 ms) 27: [ RUN ] SimdMathTest.exp2 -27: [ OK ] SimdMathTest.exp2 (3 ms) +27: [ OK ] SimdMathTest.exp2 (1 ms) 27: [ RUN ] SimdMathTest.exp2Unsafe 27: [ OK ] SimdMathTest.exp2Unsafe (1 ms) 27: [ RUN ] SimdMathTest.exp -27: [ OK ] SimdMathTest.exp (3 ms) +27: [ OK ] SimdMathTest.exp (9 ms) 27: [ RUN ] SimdMathTest.expUnsafe -27: [ OK ] SimdMathTest.expUnsafe (1 ms) +27: [ OK ] SimdMathTest.expUnsafe (0 ms) 27: [ RUN ] SimdMathTest.pow 27: [ OK ] SimdMathTest.pow (0 ms) 27: [ RUN ] SimdMathTest.powUnsafe 27: [ OK ] SimdMathTest.powUnsafe (0 ms) 27: [ RUN ] SimdMathTest.erf -27: [ OK ] SimdMathTest.erf (1 ms) +27: [ OK ] SimdMathTest.erf (0 ms) 27: [ RUN ] SimdMathTest.erfc 27: [ OK ] SimdMathTest.erfc (1 ms) 27: [ RUN ] SimdMathTest.sin -27: [ OK ] SimdMathTest.sin (2 ms) +27: [ OK ] SimdMathTest.sin (0 ms) 27: [ RUN ] SimdMathTest.cos -27: [ OK ] SimdMathTest.cos (2 ms) +27: [ OK ] SimdMathTest.cos (1 ms) 27: [ RUN ] SimdMathTest.tan -27: [ OK ] SimdMathTest.tan (3 ms) +27: [ OK ] SimdMathTest.tan (1 ms) 27: [ RUN ] SimdMathTest.asin -27: [ OK ] SimdMathTest.asin (1 ms) +27: [ OK ] SimdMathTest.asin (0 ms) 27: [ RUN ] SimdMathTest.acos 27: [ OK ] SimdMathTest.acos (1 ms) 27: [ RUN ] SimdMathTest.atan -27: [ OK ] SimdMathTest.atan (1 ms) +27: [ OK ] SimdMathTest.atan (0 ms) 27: [ RUN ] SimdMathTest.atan2 27: [ OK ] SimdMathTest.atan2 (0 ms) 27: [ RUN ] SimdMathTest.pmeForceCorrection 27: [ OK ] SimdMathTest.pmeForceCorrection (1 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrection -27: [ OK ] SimdMathTest.pmePotentialCorrection (1 ms) +27: [ OK ] SimdMathTest.pmePotentialCorrection (0 ms) 27: [ RUN ] SimdMathTest.invsqrtSingleAccuracy -27: [ OK ] SimdMathTest.invsqrtSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.invsqrtSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy 27: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracy -27: [ OK ] SimdMathTest.sqrtSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.sqrtSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe -27: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (1 ms) +27: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.invSingleAccuracy -27: [ OK ] SimdMathTest.invSingleAccuracy (2 ms) +27: [ OK ] SimdMathTest.invSingleAccuracy (9 ms) 27: [ RUN ] SimdMathTest.cbrtSingleAccuracy 27: [ OK ] SimdMathTest.cbrtSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.invcbrtSingleAccuracy -27: [ OK ] SimdMathTest.invcbrtSingleAccuracy (2 ms) +27: [ OK ] SimdMathTest.invcbrtSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.log2SingleAccuracy -27: [ OK ] SimdMathTest.log2SingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.log2SingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.logSingleAccuracy 27: [ OK ] SimdMathTest.logSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracy -27: [ OK ] SimdMathTest.exp2SingleAccuracy (2 ms) +27: [ OK ] SimdMathTest.exp2SingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe -27: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) +27: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracy -27: [ OK ] SimdMathTest.expSingleAccuracy (2 ms) +27: [ OK ] SimdMathTest.expSingleAccuracy (5 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe -27: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (0 ms) +27: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) 27: [ RUN ] SimdMathTest.powSingleAccuracy 27: [ OK ] SimdMathTest.powSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.powSingleAccuracyUnsafe 27: [ OK ] SimdMathTest.powSingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.erfSingleAccuracy -27: [ OK ] SimdMathTest.erfSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.erfSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.erfcSingleAccuracy -27: [ OK ] SimdMathTest.erfcSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.erfcSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.sinSingleAccuracy 27: [ OK ] SimdMathTest.sinSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.cosSingleAccuracy -27: [ OK ] SimdMathTest.cosSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.cosSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.tanSingleAccuracy -27: [ OK ] SimdMathTest.tanSingleAccuracy (2 ms) +27: [ OK ] SimdMathTest.tanSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.asinSingleAccuracy 27: [ OK ] SimdMathTest.asinSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.acosSingleAccuracy 27: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.atanSingleAccuracy -27: [ OK ] SimdMathTest.atanSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.atanSingleAccuracy (8 ms) 27: [ RUN ] SimdMathTest.atan2SingleAccuracy 27: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy @@ -59011,7 +58944,7 @@ 27: [ OK ] SimdIntegerTest.cvtB2IB (0 ms) 27: [ RUN ] SimdIntegerTest.cvtIB2B 27: [ OK ] SimdIntegerTest.cvtIB2B (0 ms) -27: [----------] 23 tests from SimdIntegerTest (1 ms total) +27: [----------] 23 tests from SimdIntegerTest (0 ms total) 27: 27: [----------] 41 tests from SimdScalarTest 27: [ RUN ] SimdScalarTest.load @@ -59096,7 +59029,7 @@ 27: [ OK ] SimdScalarTest.cvtIB2B (0 ms) 27: [ RUN ] SimdScalarTest.expandScalarsToTriplets 27: [ OK ] SimdScalarTest.expandScalarsToTriplets (0 ms) -27: [----------] 41 tests from SimdScalarTest (0 ms total) +27: [----------] 41 tests from SimdScalarTest (1 ms total) 27: 27: [----------] 8 tests from SimdScalarUtilTest 27: [ RUN ] SimdScalarUtilTest.gatherLoadTranspose @@ -59195,9 +59128,9 @@ 27: [----------] 37 tests from SimdScalarMathTest (0 ms total) 27: 27: [----------] Global test environment tear-down -27: [==========] 247 tests from 19 test cases ran. (62 ms total) +27: [==========] 247 tests from 19 test cases ran. (61 ms total) 27: [ PASSED ] 247 tests. -27/54 Test #27: SimdUnitTests ....................... Passed 0.11 sec +27/54 Test #27: SimdUnitTests ....................... Passed 0.09 sec test 28 Start 28: CompatibilityHelpersTests @@ -59336,12 +59269,12 @@ 28: [ RUN ] OptionalMemberSwapTest.CanSwapDisengagedWithDisengaged 28: [ OK ] OptionalMemberSwapTest.CanSwapDisengagedWithDisengaged (0 ms) 28: [ RUN ] OptionalMemberSwapTest.CanSwapEngagedWithDisengaged -28: [ OK ] OptionalMemberSwapTest.CanSwapEngagedWithDisengaged (1 ms) +28: [ OK ] OptionalMemberSwapTest.CanSwapEngagedWithDisengaged (0 ms) 28: [ RUN ] OptionalMemberSwapTest.CanSwapDisengagedWithEngaged 28: [ OK ] OptionalMemberSwapTest.CanSwapDisengagedWithEngaged (0 ms) 28: [ RUN ] OptionalMemberSwapTest.CanSwapEngagedWithEngaged 28: [ OK ] OptionalMemberSwapTest.CanSwapEngagedWithEngaged (0 ms) -28: [----------] 4 tests from OptionalMemberSwapTest (1 ms total) +28: [----------] 4 tests from OptionalMemberSwapTest (0 ms total) 28: 28: [----------] 4 tests from OptionalImplicitValueTest 28: [ RUN ] OptionalImplicitValueTest.CanObtainValueConst @@ -59474,11 +59407,11 @@ 28: [ RUN ] StringViewTest.ThrowsOnOutOfBoundsCopy 28: [ OK ] StringViewTest.ThrowsOnOutOfBoundsCopy (0 ms) 28: [ RUN ] StringViewTest.CanObtainSubstringWithSubstr -28: [ OK ] StringViewTest.CanObtainSubstringWithSubstr (0 ms) +28: [ OK ] StringViewTest.CanObtainSubstringWithSubstr (1 ms) 28: [ RUN ] StringViewTest.ThrowsOnOutOfBoundsSubstr 28: [ OK ] StringViewTest.ThrowsOnOutOfBoundsSubstr (0 ms) 28: [ RUN ] StringViewTest.CanLexicallyCompareViewWithCompare -28: [ OK ] StringViewTest.CanLexicallyCompareViewWithCompare (1 ms) +28: [ OK ] StringViewTest.CanLexicallyCompareViewWithCompare (0 ms) 28: [ RUN ] StringViewTest.CanCompareEmptyViewsWIthCompare 28: [ OK ] StringViewTest.CanCompareEmptyViewsWIthCompare (0 ms) 28: [ RUN ] StringViewTest.CanCompareSubStringWithViewViaCompare @@ -59599,9 +59532,9 @@ 28: [----------] 5 tests from StringViewExtensionTest (0 ms total) 28: 28: [----------] Global test environment tear-down -28: [==========] 170 tests from 12 test cases ran. (3 ms total) +28: [==========] 170 tests from 12 test cases ran. (2 ms total) 28: [ PASSED ] 170 tests. -28/54 Test #28: CompatibilityHelpersTests ........... Passed 0.06 sec +28/54 Test #28: CompatibilityHelpersTests ........... Passed 0.05 sec test 29 Start 29: GmxAnaTest @@ -59611,7 +59544,7 @@ 29: [----------] Global test environment set-up. 29: [----------] 5 tests from Entropy 29: [ RUN ] Entropy.Schlitter_300_NoLinear -29: [ OK ] Entropy.Schlitter_300_NoLinear (0 ms) +29: [ OK ] Entropy.Schlitter_300_NoLinear (1 ms) 29: [ RUN ] Entropy.Schlitter_300_Linear 29: [ OK ] Entropy.Schlitter_300_Linear (0 ms) 29: [ RUN ] Entropy.QuasiHarmonic_300_NoLinear @@ -59646,7 +59579,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 2: 'atom3' 29: Selected 3: 'atoms12' -29: [ OK ] MindistTest.mindistWorksWithMultipleAtoms (1 ms) +29: [ OK ] MindistTest.mindistWorksWithMultipleAtoms (0 ms) 29: [ RUN ] MindistTest.mindistDoesNotPickUpContacts 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -59658,7 +59591,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 0: 'atom1' 29: Selected 1: 'atom2' -29: [ OK ] MindistTest.mindistDoesNotPickUpContacts (1 ms) +29: [ OK ] MindistTest.mindistDoesNotPickUpContacts (0 ms) 29: [ RUN ] MindistTest.mindistPicksUpContacts 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -59670,7 +59603,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 0: 'atom1' 29: Selected 1: 'atom2' -29: [ OK ] MindistTest.mindistPicksUpContacts (0 ms) +29: [ OK ] MindistTest.mindistPicksUpContacts (1 ms) 29: [ RUN ] MindistTest.ngWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -59683,7 +59616,7 @@ 29: Selected 0: 'atom1' 29: Selected 1: 'atom2' 29: Selected 2: 'atom3' -29: [ OK ] MindistTest.ngWorks (1 ms) +29: [ OK ] MindistTest.ngWorks (0 ms) 29: [ RUN ] MindistTest.groupWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -59695,7 +59628,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 3: 'atoms12' 29: Selected 2: 'atom3' -29: [ OK ] MindistTest.groupWorks (1 ms) +29: [ OK ] MindistTest.groupWorks (0 ms) 29: [ RUN ] MindistTest.maxDistWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -59707,7 +59640,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 2: 'atom3' 29: Selected 3: 'atoms12' -29: [ OK ] MindistTest.maxDistWorks (1 ms) +29: [ OK ] MindistTest.maxDistWorks (0 ms) 29: [ RUN ] MindistTest.noPbcWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -59719,7 +59652,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 0: 'atom1' 29: Selected 1: 'atom2' -29: [ OK ] MindistTest.noPbcWorks (0 ms) +29: [ OK ] MindistTest.noPbcWorks (1 ms) 29: [ RUN ] MindistTest.resPerTimeWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -59731,7 +59664,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 3: 'atoms12' 29: Selected 2: 'atom3' -29: [ OK ] MindistTest.resPerTimeWorks (1 ms) +29: [ OK ] MindistTest.resPerTimeWorks (0 ms) 29: [ RUN ] MindistTest.matrixWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -59743,8 +59676,8 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 5: 'atoms123' 29: Special case: making distance matrix between all atoms in group atoms123 -29: [ OK ] MindistTest.matrixWorks (1 ms) -29: [----------] 10 tests from MindistTest (8 ms total) +29: [ OK ] MindistTest.matrixWorks (9 ms) +29: [----------] 10 tests from MindistTest (12 ms total) 29: 29: [----------] 3 tests from MsdTest 29: [ RUN ] MsdTest.threeDimensionalDiffusion @@ -59759,7 +59692,7 @@ 29: Fitting from 1 to 8 ps 29: 29: D[ particles] 4.0000 (+/- 0.0000) 1e-5 cm^2/s -29: [ OK ] MsdTest.threeDimensionalDiffusion (1 ms) +29: [ OK ] MsdTest.threeDimensionalDiffusion (0 ms) 29: [ RUN ] MsdTest.twoDimensionalDiffusion 29: 29: Select a group to calculate mean squared displacement for: @@ -59785,8 +59718,8 @@ 29: Fitting from 1 to 8 ps 29: 29: D[ particles] 8.0000 (+/- 0.0000) 1e-5 cm^2/s -29: [ OK ] MsdTest.oneDimensionalDiffusion (1 ms) -29: [----------] 3 tests from MsdTest (3 ms total) +29: [ OK ] MsdTest.oneDimensionalDiffusion (0 ms) +29: [----------] 3 tests from MsdTest (1 ms total) 29: 29: [----------] 3 tests from MsdMolTest 29: [ RUN ] MsdMolTest.diffMolMassWeighted @@ -59795,7 +59728,7 @@ 29: For a correct single-point energy evaluation with nsteps = 0, use 29: continuation = yes to avoid constraining the input coordinates. 29: -29: Setting the LD random seed to -3186757 +29: Setting the LD random seed to -67207331 29: Generated 330891 of the 330891 non-bonded parameter combinations 29: Generating 1-4 interactions: fudge = 0.5 29: Generated 330891 of the 330891 1-4 parameter combinations @@ -59832,14 +59765,14 @@ 29: Fitting from 0.008 to 0.088 ps 29: 29: D[ water] 6.5741 (+/- 0.7753) 1e-5 cm^2/s -29: [ OK ] MsdMolTest.diffMolMassWeighted (289 ms) +29: [ OK ] MsdMolTest.diffMolMassWeighted (558 ms) 29: [ RUN ] MsdMolTest.diffMolNonMassWeighted 29: 29: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary/MsdMolTest_diffMolNonMassWeighted.mdp]: 29: For a correct single-point energy evaluation with nsteps = 0, use 29: continuation = yes to avoid constraining the input coordinates. 29: -29: Setting the LD random seed to -4326539 +29: Setting the LD random seed to 969899995 29: Generated 330891 of the 330891 non-bonded parameter combinations 29: Generating 1-4 interactions: fudge = 0.5 29: Generated 330891 of the 330891 1-4 parameter combinations @@ -59876,14 +59809,14 @@ 29: Fitting from 0.008 to 0.088 ps 29: 29: D[ water] 6.5741 (+/- 0.7753) 1e-5 cm^2/s -29: [ OK ] MsdMolTest.diffMolNonMassWeighted (229 ms) +29: [ OK ] MsdMolTest.diffMolNonMassWeighted (474 ms) 29: [ RUN ] MsdMolTest.diffMolSelected 29: 29: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary/MsdMolTest_diffMolSelected.mdp]: 29: For a correct single-point energy evaluation with nsteps = 0, use 29: continuation = yes to avoid constraining the input coordinates. 29: -29: Setting the LD random seed to -2368068 +29: Setting the LD random seed to -1080071826 29: Generated 330891 of the 330891 non-bonded parameter combinations 29: Generating 1-4 interactions: fudge = 0.5 29: Generated 330891 of the 330891 1-4 parameter combinations @@ -59920,8 +59853,8 @@ 29: Fitting from 0.008 to 0.088 ps 29: 29: D[ mol] 7.8614 (+/- 1.5619) 1e-5 cm^2/s -29: [ OK ] MsdMolTest.diffMolSelected (230 ms) -29: [----------] 3 tests from MsdMolTest (748 ms total) +29: [ OK ] MsdMolTest.diffMolSelected (289 ms) +29: [----------] 3 tests from MsdMolTest (1321 ms total) 29: 29: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj 29: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 @@ -59931,14 +59864,14 @@ 29: Select a group: trr version: GMX_trn_file (single precision) 29: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Selected 0: 'System' -29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 (0 ms) +29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 (1 ms) 29: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 29: Group 0 ( System) has 6 elements 29: Group 1 ( Water) has 6 elements 29: Group 2 ( SOL) has 6 elements 29: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Selected 0: 'System' -29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 (2 ms) +29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 (6 ms) 29: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 29: Group 0 ( System) has 6 elements 29: Group 1 ( Water) has 6 elements @@ -59969,12 +59902,12 @@ 29: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Selected 0: 'System' 29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 (1 ms) -29: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (4 ms total) +29: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (9 ms total) 29: 29: [----------] Global test environment tear-down -29: [==========] 27 tests from 5 test cases ran. (764 ms total) +29: [==========] 27 tests from 5 test cases ran. (1344 ms total) 29: [ PASSED ] 27 tests. -29/54 Test #29: GmxAnaTest .......................... Passed 0.78 sec +29/54 Test #29: GmxAnaTest .......................... Passed 1.39 sec test 30 Start 30: GmxPreprocessTests @@ -59988,7 +59921,7 @@ 30: [ RUN ] GenconfTest.nbox_norenumber_Works 30: [ OK ] GenconfTest.nbox_norenumber_Works (0 ms) 30: [ RUN ] GenconfTest.nbox_dist_Works -30: [ OK ] GenconfTest.nbox_dist_Works (1 ms) +30: [ OK ] GenconfTest.nbox_dist_Works (0 ms) 30: [ RUN ] GenconfTest.nbox_rot_Works 30: center of geometry: 1.733667, 1.477000, 0.905167 30: center of geometry: 1.733667, 1.477000, 0.905167 @@ -60002,7 +59935,7 @@ 30: center of geometry: 1.733667, 1.477000, 0.905167 30: center of geometry: 1.733667, 1.477000, 0.905167 30: center of geometry: 1.733667, 1.477000, 0.905167 -30: [ OK ] GenconfTest.nbox_rot_Works (0 ms) +30: [ OK ] GenconfTest.nbox_rot_Works (1 ms) 30: [----------] 4 tests from GenconfTest (2 ms total) 30: 30: [----------] 2 tests from GenionTest @@ -60018,7 +59951,7 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: Setting the LD random seed to -1112083233 +30: Setting the LD random seed to 2141093823 30: Generated 331705 of the 331705 non-bonded parameter combinations 30: Generating 1-4 interactions: fudge = 0.5 30: Generated 331705 of the 331705 1-4 parameter combinations @@ -60060,7 +59993,7 @@ 30: Will try to add 4 NA ions and 4 CL ions. 30: Select a continuous group of solvent molecules 30: Selected 1: 'Water' -30: [ OK ] GenionTest.HighConcentrationIonPlacement (250 ms) +30: [ OK ] GenionTest.HighConcentrationIonPlacement (267 ms) 30: [ RUN ] GenionTest.NoIonPlacement 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GenionTest_NoIonPlacement_input.mdp]: @@ -60073,7 +60006,7 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: Setting the LD random seed to -1229193355 +30: Setting the LD random seed to 671053695 30: Generated 331705 of the 331705 non-bonded parameter combinations 30: Generating 1-4 interactions: fudge = 0.5 30: Generated 331705 of the 331705 1-4 parameter combinations @@ -60096,8 +60029,8 @@ 30: There are: 1 Other residues 30: Analysing residues not classified as Protein/DNA/RNA/Water and splitting into groups... 30: This run will generate roughly 0 Mb of data -30: [ OK ] GenionTest.NoIonPlacement (230 ms) -30: [----------] 2 tests from GenionTest (480 ms total) +30: [ OK ] GenionTest.NoIonPlacement (285 ms) +30: [----------] 2 tests from GenionTest (552 ms total) 30: 30: [----------] 1 test from GenRestrTest 30: [ RUN ] GenRestrTest.SimpleRestraintsGenerated @@ -60253,7 +60186,7 @@ 30: Writing generated configuration to /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEnlargedBox_out.gro 30: 30: Output configuration contains 10 atoms in 4 residues -30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (0 ms) +30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (1 ms) 30: [ RUN ] InsertMoleculesTest.InsertsMoleculesWithReplacement 30: Reading solute configuration 30: Initialising inter-atomic distances... @@ -60319,7 +60252,7 @@ 30: Writing generated configuration to /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoFixedPositions_out.gro 30: 30: Output configuration contains 6 atoms in 3 residues -30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions (1 ms) +30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions (0 ms) 30: [----------] 5 tests from InsertMoleculesTest (7 ms total) 30: 30: [----------] 14 tests from GetIrTest @@ -60331,9 +60264,9 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (1 ms) +30: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (2 ms) 30: [ RUN ] GetIrTest.RejectsNonCommentLineWithNoEquals -30: [ OK ] GetIrTest.RejectsNonCommentLineWithNoEquals (5 ms) +30: [ OK ] GetIrTest.RejectsNonCommentLineWithNoEquals (19 ms) 30: [ RUN ] GetIrTest.AcceptsKeyWithoutValue 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsKeyWithoutValue_input.mdp]: @@ -60342,46 +60275,46 @@ 30: 30: [ OK ] GetIrTest.AcceptsKeyWithoutValue (2 ms) 30: [ RUN ] GetIrTest.RejectsValueWithoutKey -30: [ OK ] GetIrTest.RejectsValueWithoutKey (5 ms) +30: [ OK ] GetIrTest.RejectsValueWithoutKey (14 ms) 30: [ RUN ] GetIrTest.RejectsEmptyKeyAndEmptyValue -30: [ OK ] GetIrTest.RejectsEmptyKeyAndEmptyValue (5 ms) +30: [ OK ] GetIrTest.RejectsEmptyKeyAndEmptyValue (16 ms) 30: [ RUN ] GetIrTest.AcceptsDefineParametersWithValuesIncludingAssignment 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsDefineParametersWithValuesIncludingAssignment_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsDefineParametersWithValuesIncludingAssignment (1 ms) +30: [ OK ] GetIrTest.AcceptsDefineParametersWithValuesIncludingAssignment (2 ms) 30: [ RUN ] GetIrTest.AcceptsEmptyLines 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsEmptyLines_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsEmptyLines (2 ms) +30: [ OK ] GetIrTest.AcceptsEmptyLines (1 ms) 30: [ RUN ] GetIrTest.AcceptsElectricField 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsElectricField_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsElectricField (1 ms) +30: [ OK ] GetIrTest.AcceptsElectricField (10 ms) 30: [ RUN ] GetIrTest.AcceptsElectricFieldPulsed 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsElectricFieldPulsed_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsElectricFieldPulsed (1 ms) +30: [ OK ] GetIrTest.AcceptsElectricFieldPulsed (2 ms) 30: [ RUN ] GetIrTest.AcceptsElectricFieldOscillating 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsElectricFieldOscillating_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsElectricFieldOscillating (2 ms) +30: [ OK ] GetIrTest.AcceptsElectricFieldOscillating (1 ms) 30: [ RUN ] GetIrTest.RejectsDuplicateOldAndNewKeys -30: [ OK ] GetIrTest.RejectsDuplicateOldAndNewKeys (3 ms) +30: [ OK ] GetIrTest.RejectsDuplicateOldAndNewKeys (24 ms) 30: [ RUN ] GetIrTest.AcceptsImplicitSolventNo 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsImplicitSolventNo_input.mdp]: @@ -60390,7 +60323,7 @@ 30: 30: [ OK ] GetIrTest.AcceptsImplicitSolventNo (2 ms) 30: [ RUN ] GetIrTest.RejectsImplicitSolventYes -30: [ OK ] GetIrTest.RejectsImplicitSolventYes (5 ms) +30: [ OK ] GetIrTest.RejectsImplicitSolventYes (14 ms) 30: [ RUN ] GetIrTest.AcceptsMimic 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsMimic_input.mdp]: @@ -60398,7 +60331,7 @@ 30: continuation = yes to avoid constraining the input coordinates. 30: 30: [ OK ] GetIrTest.AcceptsMimic (2 ms) -30: [----------] 14 tests from GetIrTest (37 ms total) +30: [----------] 14 tests from GetIrTest (111 ms total) 30: 30: [----------] 5 tests from SolvateTest 30: [ RUN ] SolvateTest.cs_box_Works @@ -60438,7 +60371,7 @@ 30: Density : 1056.36 (g/l) 30: Number of solvent molecules: 47 30: -30: [ OK ] SolvateTest.cs_box_Works (4 ms) +30: [ OK ] SolvateTest.cs_box_Works (13 ms) 30: [ RUN ] SolvateTest.cs_cp_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -60478,7 +60411,7 @@ 30: Density : 974.777 (g/l) 30: Number of solvent molecules: 886 30: -30: [ OK ] SolvateTest.cs_cp_Works (25 ms) +30: [ OK ] SolvateTest.cs_cp_Works (44 ms) 30: [ RUN ] SolvateTest.cs_cp_p_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -60520,7 +60453,7 @@ 30: 30: Processing topology 30: Adding line for 886 solvent molecules with resname (SOL) to topology file (/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_p_Works_spc-and-methanol.top) -30: [ OK ] SolvateTest.cs_cp_p_Works (24 ms) +30: [ OK ] SolvateTest.cs_cp_p_Works (54 ms) 30: [ RUN ] SolvateTest.shell_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -60561,7 +60494,7 @@ 30: Density : 279.3 (g/l) 30: Number of solvent molecules: 252 30: -30: [ OK ] SolvateTest.shell_Works (12 ms) +30: [ OK ] SolvateTest.shell_Works (23 ms) 30: [ RUN ] SolvateTest.update_Topology_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -60605,8 +60538,8 @@ 30: Processing topology 30: Adding line for 1876 solvent molecules with resname (HOH) to topology file (/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) 30: Adding line for 2169 solvent molecules with resname (SOL) to topology file (/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) -30: [ OK ] SolvateTest.update_Topology_Works (101 ms) -30: [----------] 5 tests from SolvateTest (166 ms total) +30: [ OK ] SolvateTest.update_Topology_Works (106 ms) +30: [----------] 5 tests from SolvateTest (240 ms total) 30: 30: [----------] 1 test from TopDirTests 30: [ RUN ] TopDirTests.NamesArrayHasCorrectSize @@ -60614,9 +60547,9 @@ 30: [----------] 1 test from TopDirTests (0 ms total) 30: 30: [----------] Global test environment tear-down -30: [==========] 51 tests from 9 test cases ran. (693 ms total) +30: [==========] 51 tests from 9 test cases ran. (913 ms total) 30: [ PASSED ] 51 tests. -30/54 Test #30: GmxPreprocessTests .................. Passed 0.71 sec +30/54 Test #30: GmxPreprocessTests .................. Passed 0.93 sec test 31 Start 31: Pdb2gmx1Test @@ -60683,7 +60616,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/0 (36 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/0 (40 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -60743,7 +60676,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 (41 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 (47 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -60801,7 +60734,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 (37 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 (39 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -60859,7 +60792,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 (34 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 (36 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -60921,7 +60854,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 (39 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 (41 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -60984,7 +60917,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 (44 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 (46 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -61045,7 +60978,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 (41 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 (43 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -61106,7 +61039,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 (36 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 (39 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -61165,7 +61098,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 (36 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 (39 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -61225,7 +61158,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 (41 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 (44 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -61283,7 +61216,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 (37 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 (39 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -61341,7 +61274,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 (33 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 (36 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -61403,7 +61336,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 (40 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 (42 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -61466,7 +61399,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 (44 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 (46 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -61527,7 +61460,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 (41 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 (43 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -61588,7 +61521,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 (37 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 (39 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -61707,7 +61640,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 (41 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 (40 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -61765,7 +61698,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 (37 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 (36 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -61885,7 +61818,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 (39 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 (40 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -61948,7 +61881,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 (44 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 (43 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -62071,12 +62004,12 @@ 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ 31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 (37 ms) -31: [----------] 24 tests from ForOplsaa/Pdb2gmxTest (928 ms total) +31: [----------] 24 tests from ForOplsaa/Pdb2gmxTest (969 ms total) 31: 31: [----------] Global test environment tear-down -31: [==========] 24 tests from 1 test case ran. (929 ms total) +31: [==========] 24 tests from 1 test case ran. (969 ms total) 31: [ PASSED ] 24 tests. -31/54 Test #31: Pdb2gmx1Test ........................ Passed 0.94 sec +31/54 Test #31: Pdb2gmx1Test ........................ Passed 0.98 sec test 32 Start 32: Pdb2gmx2Test @@ -62158,7 +62091,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 (24 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 (28 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -62233,7 +62166,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 (27 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 (33 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -62306,7 +62239,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 (24 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 (28 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -62379,7 +62312,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 (21 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 (26 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -62456,7 +62389,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 (24 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 (29 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -62534,7 +62467,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 (28 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 (34 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -62610,7 +62543,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 (24 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 (28 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -62686,7 +62619,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 (23 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 (25 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -62760,7 +62693,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 (23 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 (25 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -62835,7 +62768,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 (27 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 (29 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -62908,7 +62841,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 (23 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 (26 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -62981,7 +62914,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 (22 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 (24 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -63058,7 +62991,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 (24 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 (27 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -63136,7 +63069,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 (27 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 (34 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -63212,7 +63145,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 (25 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 (30 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -63288,8 +63221,8 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 (22 ms) -32: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest (388 ms total) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 (28 ms) +32: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest (455 ms total) 32: 32: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -63369,7 +63302,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 (25 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 (30 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -63448,7 +63381,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 (29 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 (35 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -63525,7 +63458,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 (26 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 (31 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -63602,7 +63535,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 (23 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 (27 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -63683,7 +63616,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 (26 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 (28 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -63765,7 +63698,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 (30 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 (33 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -63845,7 +63778,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 (27 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 (29 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -63925,7 +63858,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 (24 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 (27 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -64003,7 +63936,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 (25 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 (27 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -64082,7 +64015,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 (29 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 (31 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -64159,7 +64092,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 (25 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 (26 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -64236,7 +64169,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 (23 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 (32 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -64317,7 +64250,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 (26 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 (29 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -64399,7 +64332,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 (30 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 (34 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -64479,7 +64412,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 (26 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 (30 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -64559,13 +64492,13 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 (25 ms) -32: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest (420 ms total) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 (29 ms) +32: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest (479 ms total) 32: 32: [----------] Global test environment tear-down -32: [==========] 32 tests from 2 test cases ran. (808 ms total) +32: [==========] 32 tests from 2 test cases ran. (934 ms total) 32: [ PASSED ] 32 tests. -32/54 Test #32: Pdb2gmx2Test ........................ Passed 0.82 sec +32/54 Test #32: Pdb2gmx2Test ........................ Passed 0.95 sec test 33 Start 33: Pdb2gmx3Test @@ -64710,7 +64643,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 (41 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 (42 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -64844,7 +64777,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 (33 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 (34 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -64987,7 +64920,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 (45 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 (44 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -65127,8 +65060,8 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 (36 ms) -33: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest (312 ms total) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 (37 ms) +33: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest (313 ms total) 33: 33: [----------] 8 tests from ForCharmm27/Pdb2gmxTest 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -65281,7 +65214,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 (41 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 (38 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -65355,7 +65288,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 (37 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 (34 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -65429,7 +65362,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 (33 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 (31 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -65507,7 +65440,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 (40 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 (37 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -65586,7 +65519,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 (43 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 (40 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -65663,7 +65596,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 (42 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 (38 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -65740,8 +65673,8 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 (36 ms) -33: [----------] 8 tests from ForCharmm27/Pdb2gmxTest (309 ms total) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 (33 ms) +33: [----------] 8 tests from ForCharmm27/Pdb2gmxTest (290 ms total) 33: 33: [----------] 8 tests from ChainSep/Pdb2gmxTest 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -65829,7 +65762,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 (37 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 (34 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -66050,7 +65983,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 (37 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 (35 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -66185,7 +66118,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 (26 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 (25 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -66275,7 +66208,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 (37 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 (36 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -66436,7 +66369,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 (24 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 (25 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -66518,7 +66451,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 (36 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 (35 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -66626,8 +66559,8 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 (27 ms) -33: [----------] 8 tests from ChainSep/Pdb2gmxTest (251 ms total) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 (26 ms) +33: [----------] 8 tests from ChainSep/Pdb2gmxTest (241 ms total) 33: 33: [----------] 4 tests from ChainChanges/Pdb2gmxTest 33: [ RUN ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -66827,7 +66760,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/two-fragments.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/1 (16 ms) +33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/1 (17 ms) 33: [ RUN ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/2 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -67025,13 +66958,13 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/two-fragments.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/3 (16 ms) -33: [----------] 4 tests from ChainChanges/Pdb2gmxTest (66 ms total) +33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/3 (17 ms) +33: [----------] 4 tests from ChainChanges/Pdb2gmxTest (68 ms total) 33: 33: [----------] Global test environment tear-down -33: [==========] 28 tests from 4 test cases ran. (938 ms total) +33: [==========] 28 tests from 4 test cases ran. (912 ms total) 33: [ PASSED ] 28 tests. -33/54 Test #33: Pdb2gmx3Test ........................ Passed 0.95 sec +33/54 Test #33: Pdb2gmx3Test ........................ Passed 0.92 sec test 34 Start 34: CorrelationsTest @@ -67041,59 +66974,59 @@ 34: [----------] Global test environment set-up. 34: [----------] 10 tests from AutocorrTest 34: [ RUN ] AutocorrTest.EacNormal -34: [ OK ] AutocorrTest.EacNormal (9 ms) +34: [ OK ] AutocorrTest.EacNormal (43 ms) 34: [ RUN ] AutocorrTest.EacNoNormalize -34: [ OK ] AutocorrTest.EacNoNormalize (7 ms) +34: [ OK ] AutocorrTest.EacNoNormalize (25 ms) 34: [ RUN ] AutocorrTest.EacCos -34: [ OK ] AutocorrTest.EacCos (16 ms) +34: [ OK ] AutocorrTest.EacCos (64 ms) 34: [ RUN ] AutocorrTest.EacVector -34: [ OK ] AutocorrTest.EacVector (22 ms) +34: [ OK ] AutocorrTest.EacVector (79 ms) 34: [ RUN ] AutocorrTest.EacRcross -34: [ OK ] AutocorrTest.EacRcross (1 ms) +34: [ OK ] AutocorrTest.EacRcross (0 ms) 34: [ RUN ] AutocorrTest.EacP0 -34: [ OK ] AutocorrTest.EacP0 (26 ms) +34: [ OK ] AutocorrTest.EacP0 (80 ms) 34: [ RUN ] AutocorrTest.EacP1 -34: [ OK ] AutocorrTest.EacP1 (28 ms) +34: [ OK ] AutocorrTest.EacP1 (95 ms) 34: [ RUN ] AutocorrTest.EacP2 -34: [ OK ] AutocorrTest.EacP2 (49 ms) +34: [ OK ] AutocorrTest.EacP2 (204 ms) 34: [ RUN ] AutocorrTest.EacP3 -34: [ OK ] AutocorrTest.EacP3 (4 ms) +34: [ OK ] AutocorrTest.EacP3 (2 ms) 34: [ RUN ] AutocorrTest.EacP4 -34: [ OK ] AutocorrTest.EacP4 (29 ms) -34: [----------] 10 tests from AutocorrTest (192 ms total) +34: [ OK ] AutocorrTest.EacP4 (102 ms) +34: [----------] 10 tests from AutocorrTest (695 ms total) 34: 34: [----------] 1 test from ManyAutocorrelationTest 34: [ RUN ] ManyAutocorrelationTest.Empty -34: [ OK ] ManyAutocorrelationTest.Empty (0 ms) -34: [----------] 1 test from ManyAutocorrelationTest (0 ms total) +34: [ OK ] ManyAutocorrelationTest.Empty (1 ms) +34: [----------] 1 test from ManyAutocorrelationTest (1 ms total) 34: 34: [----------] 10 tests from ExpfitTest 34: [ RUN ] ExpfitTest.EffnEXP1 -34: [ OK ] ExpfitTest.EffnEXP1 (1 ms) +34: [ OK ] ExpfitTest.EffnEXP1 (0 ms) 34: [ RUN ] ExpfitTest.EffnEXP2 34: [ OK ] ExpfitTest.EffnEXP2 (1 ms) 34: [ RUN ] ExpfitTest.EffnEXPEXP -34: [ OK ] ExpfitTest.EffnEXPEXP (2 ms) +34: [ OK ] ExpfitTest.EffnEXPEXP (0 ms) 34: [ RUN ] ExpfitTest.EffnEXP5 -34: [ OK ] ExpfitTest.EffnEXP5 (5 ms) +34: [ OK ] ExpfitTest.EffnEXP5 (2 ms) 34: [ RUN ] ExpfitTest.EffnEXP7 -34: [ OK ] ExpfitTest.EffnEXP7 (5 ms) +34: [ OK ] ExpfitTest.EffnEXP7 (2 ms) 34: [ RUN ] ExpfitTest.EffnEXP9 -34: [ OK ] ExpfitTest.EffnEXP9 (18 ms) +34: [ OK ] ExpfitTest.EffnEXP9 (19 ms) 34: [ RUN ] ExpfitTest.EffnERF -34: [ OK ] ExpfitTest.EffnERF (2 ms) +34: [ OK ] ExpfitTest.EffnERF (1 ms) 34: [ RUN ] ExpfitTest.EffnERREST 34: [ OK ] ExpfitTest.EffnERREST (1 ms) 34: [ RUN ] ExpfitTest.EffnVAC -34: [ OK ] ExpfitTest.EffnVAC (12 ms) +34: [ OK ] ExpfitTest.EffnVAC (15 ms) 34: [ RUN ] ExpfitTest.EffnPRES -34: [ OK ] ExpfitTest.EffnPRES (11 ms) -34: [----------] 10 tests from ExpfitTest (58 ms total) +34: [ OK ] ExpfitTest.EffnPRES (18 ms) +34: [----------] 10 tests from ExpfitTest (59 ms total) 34: 34: [----------] Global test environment tear-down -34: [==========] 21 tests from 3 test cases ran. (255 ms total) +34: [==========] 21 tests from 3 test cases ran. (757 ms total) 34: [ PASSED ] 21 tests. -34/54 Test #34: CorrelationsTest .................... Passed 0.27 sec +34/54 Test #34: CorrelationsTest .................... Passed 0.77 sec test 35 Start 35: AnalysisDataUnitTests @@ -67105,39 +67038,39 @@ 35: [ RUN ] AnalysisDataInitializationTest.BasicInitialization 35: [ OK ] AnalysisDataInitializationTest.BasicInitialization (0 ms) 35: [ RUN ] AnalysisDataInitializationTest.ChecksMultiColumnModules -35: [ OK ] AnalysisDataInitializationTest.ChecksMultiColumnModules (1 ms) +35: [ OK ] AnalysisDataInitializationTest.ChecksMultiColumnModules (0 ms) 35: [ RUN ] AnalysisDataInitializationTest.ChecksMultipointModules 35: [ OK ] AnalysisDataInitializationTest.ChecksMultipointModules (0 ms) -35: [----------] 3 tests from AnalysisDataInitializationTest (1 ms total) +35: [----------] 3 tests from AnalysisDataInitializationTest (0 ms total) 35: 35: [----------] 8 tests from AnalysisDataCommonTest/0, where TypeParam = (anonymous namespace)::SimpleInputData 35: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly (0 ms) +35: [ OK ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly -35: [ OK ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly 35: [ OK ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames -35: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) +35: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames (0 ms) 35: [ RUN ] AnalysisDataCommonTest/0.FullStorageWorks -35: [ OK ] AnalysisDataCommonTest/0.FullStorageWorks (1 ms) +35: [ OK ] AnalysisDataCommonTest/0.FullStorageWorks (0 ms) 35: [ RUN ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData 35: [ OK ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData (0 ms) 35: [ RUN ] AnalysisDataCommonTest/0.LimitedStorageWorks 35: [ OK ] AnalysisDataCommonTest/0.LimitedStorageWorks (0 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/0 (4 ms total) +35: [----------] 8 tests from AnalysisDataCommonTest/0 (1 ms total) 35: 35: [----------] 8 tests from AnalysisDataCommonTest/1, where TypeParam = (anonymous namespace)::DataSetsInputData 35: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectly 35: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly 35: [ OK ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames 35: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 35: [ RUN ] AnalysisDataCommonTest/1.FullStorageWorks @@ -67146,26 +67079,26 @@ 35: [ OK ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData (0 ms) 35: [ RUN ] AnalysisDataCommonTest/1.LimitedStorageWorks 35: [ OK ] AnalysisDataCommonTest/1.LimitedStorageWorks (0 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/1 (5 ms total) +35: [----------] 8 tests from AnalysisDataCommonTest/1 (2 ms total) 35: 35: [----------] 8 tests from AnalysisDataCommonTest/2, where TypeParam = (anonymous namespace)::MultipointInputData 35: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly (0 ms) +35: [ OK ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly -35: [ OK ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames 35: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 35: [ RUN ] AnalysisDataCommonTest/2.FullStorageWorks -35: [ OK ] AnalysisDataCommonTest/2.FullStorageWorks (1 ms) +35: [ OK ] AnalysisDataCommonTest/2.FullStorageWorks (0 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData 35: [ OK ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData (0 ms) 35: [ RUN ] AnalysisDataCommonTest/2.LimitedStorageWorks -35: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (1 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/2 (6 ms total) +35: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (0 ms) +35: [----------] 8 tests from AnalysisDataCommonTest/2 (2 ms total) 35: 35: [----------] 8 tests from AnalysisDataCommonTest/3, where TypeParam = (anonymous namespace)::MultipointDataSetsInputData 35: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectly @@ -67173,51 +67106,51 @@ 35: [ RUN ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly 35: [ OK ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly -35: [ OK ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames -35: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) +35: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames (0 ms) 35: [ RUN ] AnalysisDataCommonTest/3.FullStorageWorks -35: [ OK ] AnalysisDataCommonTest/3.FullStorageWorks (0 ms) +35: [ OK ] AnalysisDataCommonTest/3.FullStorageWorks (1 ms) 35: [ RUN ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData -35: [ OK ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData (1 ms) +35: [ OK ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData (0 ms) 35: [ RUN ] AnalysisDataCommonTest/3.LimitedStorageWorks 35: [ OK ] AnalysisDataCommonTest/3.LimitedStorageWorks (0 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/3 (5 ms total) +35: [----------] 8 tests from AnalysisDataCommonTest/3 (2 ms total) 35: 35: [----------] 4 tests from AnalysisArrayDataTest 35: [ RUN ] AnalysisArrayDataTest.CallsModuleCorrectly -35: [ OK ] AnalysisArrayDataTest.CallsModuleCorrectly (1 ms) +35: [ OK ] AnalysisArrayDataTest.CallsModuleCorrectly (8 ms) 35: [ RUN ] AnalysisArrayDataTest.StorageWorks 35: [ OK ] AnalysisArrayDataTest.StorageWorks (0 ms) 35: [ RUN ] AnalysisArrayDataTest.CanSetXAxis 35: [ OK ] AnalysisArrayDataTest.CanSetXAxis (0 ms) 35: [ RUN ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount 35: [ OK ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount (0 ms) -35: [----------] 4 tests from AnalysisArrayDataTest (1 ms total) +35: [----------] 4 tests from AnalysisArrayDataTest (8 ms total) 35: 35: [----------] 6 tests from AverageModuleTest 35: [ RUN ] AverageModuleTest.BasicTest 35: [ OK ] AverageModuleTest.BasicTest (1 ms) 35: [ RUN ] AverageModuleTest.HandlesMultipointData -35: [ OK ] AverageModuleTest.HandlesMultipointData (1 ms) +35: [ OK ] AverageModuleTest.HandlesMultipointData (0 ms) 35: [ RUN ] AverageModuleTest.HandlesMultipleDataSets 35: [ OK ] AverageModuleTest.HandlesMultipleDataSets (1 ms) 35: [ RUN ] AverageModuleTest.HandlesDataSetAveraging -35: [ OK ] AverageModuleTest.HandlesDataSetAveraging (1 ms) +35: [ OK ] AverageModuleTest.HandlesDataSetAveraging (0 ms) 35: [ RUN ] AverageModuleTest.CanCustomizeXAxis -35: [ OK ] AverageModuleTest.CanCustomizeXAxis (1 ms) +35: [ OK ] AverageModuleTest.CanCustomizeXAxis (0 ms) 35: [ RUN ] AverageModuleTest.CanCustomizeNonUniformXAxis -35: [ OK ] AverageModuleTest.CanCustomizeNonUniformXAxis (0 ms) -35: [----------] 6 tests from AverageModuleTest (6 ms total) +35: [ OK ] AverageModuleTest.CanCustomizeNonUniformXAxis (1 ms) +35: [----------] 6 tests from AverageModuleTest (3 ms total) 35: 35: [----------] 2 tests from FrameAverageModuleTest 35: [ RUN ] FrameAverageModuleTest.BasicTest -35: [ OK ] FrameAverageModuleTest.BasicTest (1 ms) +35: [ OK ] FrameAverageModuleTest.BasicTest (0 ms) 35: [ RUN ] FrameAverageModuleTest.HandlesMultipleDataSets -35: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (1 ms) -35: [----------] 2 tests from FrameAverageModuleTest (2 ms total) +35: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (0 ms) +35: [----------] 2 tests from FrameAverageModuleTest (0 ms total) 35: 35: [----------] 7 tests from AnalysisHistogramSettingsTest 35: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromBins @@ -67240,51 +67173,51 @@ 35: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectly 35: [ OK ] SimpleHistogramModuleTest.ComputesCorrectly (1 ms) 35: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll -35: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (1 ms) -35: [----------] 2 tests from SimpleHistogramModuleTest (3 ms total) +35: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (9 ms) +35: [----------] 2 tests from SimpleHistogramModuleTest (10 ms total) 35: 35: [----------] 3 tests from WeightedHistogramModuleTest 35: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectly -35: [ OK ] WeightedHistogramModuleTest.ComputesCorrectly (1 ms) +35: [ OK ] WeightedHistogramModuleTest.ComputesCorrectly (0 ms) 35: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll 35: [ OK ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll (1 ms) 35: [ RUN ] WeightedHistogramModuleTest.HandlesMultipleDataSets -35: [ OK ] WeightedHistogramModuleTest.HandlesMultipleDataSets (2 ms) -35: [----------] 3 tests from WeightedHistogramModuleTest (4 ms total) +35: [ OK ] WeightedHistogramModuleTest.HandlesMultipleDataSets (0 ms) +35: [----------] 3 tests from WeightedHistogramModuleTest (1 ms total) 35: 35: [----------] 3 tests from BinAverageModuleTest 35: [ RUN ] BinAverageModuleTest.ComputesCorrectly 35: [ OK ] BinAverageModuleTest.ComputesCorrectly (1 ms) 35: [ RUN ] BinAverageModuleTest.ComputesCorrectlyWithAll -35: [ OK ] BinAverageModuleTest.ComputesCorrectlyWithAll (1 ms) +35: [ OK ] BinAverageModuleTest.ComputesCorrectlyWithAll (0 ms) 35: [ RUN ] BinAverageModuleTest.HandlesMultipleDataSets 35: [ OK ] BinAverageModuleTest.HandlesMultipleDataSets (1 ms) -35: [----------] 3 tests from BinAverageModuleTest (3 ms total) +35: [----------] 3 tests from BinAverageModuleTest (2 ms total) 35: 35: [----------] 4 tests from AbstractAverageHistogramTest 35: [ RUN ] AbstractAverageHistogramTest.ClonesCorrectly -35: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (1 ms) +35: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (0 ms) 35: [ RUN ] AbstractAverageHistogramTest.ComputesCumulativeHistogram 35: [ OK ] AbstractAverageHistogramTest.ComputesCumulativeHistogram (1 ms) 35: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth -35: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth (1 ms) +35: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth (0 ms) 35: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins 35: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins (1 ms) -35: [----------] 4 tests from AbstractAverageHistogramTest (4 ms total) +35: [----------] 4 tests from AbstractAverageHistogramTest (2 ms total) 35: 35: [----------] 3 tests from LifetimeModuleTest 35: [ RUN ] LifetimeModuleTest.BasicTest -35: [ OK ] LifetimeModuleTest.BasicTest (1 ms) +35: [ OK ] LifetimeModuleTest.BasicTest (0 ms) 35: [ RUN ] LifetimeModuleTest.CumulativeTest 35: [ OK ] LifetimeModuleTest.CumulativeTest (0 ms) 35: [ RUN ] LifetimeModuleTest.HandlesMultipleDataSets -35: [ OK ] LifetimeModuleTest.HandlesMultipleDataSets (0 ms) -35: [----------] 3 tests from LifetimeModuleTest (2 ms total) +35: [ OK ] LifetimeModuleTest.HandlesMultipleDataSets (1 ms) +35: [----------] 3 tests from LifetimeModuleTest (1 ms total) 35: 35: [----------] Global test environment tear-down -35: [==========] 69 tests from 14 test cases ran. (46 ms total) +35: [==========] 69 tests from 14 test cases ran. (34 ms total) 35: [ PASSED ] 69 tests. -35/54 Test #35: AnalysisDataUnitTests ............... Passed 0.07 sec +35/54 Test #35: AnalysisDataUnitTests ............... Passed 0.06 sec test 36 Start 36: CoordinateIOTests @@ -67302,8 +67235,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] OutputSelectorDeathTest.RejectsBadSelection (8 ms) -36: [----------] 1 test from OutputSelectorDeathTest (9 ms total) +36: [ OK ] OutputSelectorDeathTest.RejectsBadSelection (19 ms) +36: [----------] 1 test from OutputSelectorDeathTest (19 ms total) 36: 36: [----------] 5 tests from TrajectoryFrameWriterTest 36: [ RUN ] TrajectoryFrameWriterTest.RejectsWrongFiletype @@ -67315,7 +67248,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.RejectsWrongFiletype (5 ms) +36: [ OK ] TrajectoryFrameWriterTest.RejectsWrongFiletype (3 ms) 36: [ RUN ] TrajectoryFrameWriterTest.BuilderFailsWithPdbAndNoAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -67325,7 +67258,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.BuilderFailsWithPdbAndNoAtoms (5 ms) +36: [ OK ] TrajectoryFrameWriterTest.BuilderFailsWithPdbAndNoAtoms (2 ms) 36: [ RUN ] TrajectoryFrameWriterTest.BuilderFailsWithGroAndNoAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -67335,7 +67268,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.BuilderFailsWithGroAndNoAtoms (6 ms) +36: [ OK ] TrajectoryFrameWriterTest.BuilderFailsWithGroAndNoAtoms (2 ms) 36: [ RUN ] TrajectoryFrameWriterTest.BuilderImplictlyAddsAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -67353,10 +67286,10 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.BuilderImplictlyAddsAtoms (11 ms) +36: [ OK ] TrajectoryFrameWriterTest.BuilderImplictlyAddsAtoms (12 ms) 36: [ RUN ] TrajectoryFrameWriterTest.TNGOutputWorks 36: [ OK ] TrajectoryFrameWriterTest.TNGOutputWorks (0 ms) -36: [----------] 5 tests from TrajectoryFrameWriterTest (27 ms total) +36: [----------] 5 tests from TrajectoryFrameWriterTest (19 ms total) 36: 36: [----------] 5 tests from OutputAdapterContainer 36: [ RUN ] OutputAdapterContainer.MakeEmpty @@ -67373,7 +67306,7 @@ 36: 36: [----------] 5 tests from FlagTest 36: [ RUN ] FlagTest.CanSetSimpleFlag -36: [ OK ] FlagTest.CanSetSimpleFlag (0 ms) +36: [ OK ] FlagTest.CanSetSimpleFlag (1 ms) 36: [ RUN ] FlagTest.CanAddNewBox 36: [ OK ] FlagTest.CanAddNewBox (0 ms) 36: [ RUN ] FlagTest.SetsImplicitPrecisionChange @@ -67382,7 +67315,7 @@ 36: [ OK ] FlagTest.SetsImplicitStartTimeChange (0 ms) 36: [ RUN ] FlagTest.SetsImplicitTimeStepChange 36: [ OK ] FlagTest.SetsImplicitTimeStepChange (0 ms) -36: [----------] 5 tests from FlagTest (0 ms total) +36: [----------] 5 tests from FlagTest (1 ms total) 36: 36: [----------] 5 tests from SetAtomsTest 36: [ RUN ] SetAtomsTest.RemovesExistingAtoms @@ -67394,7 +67327,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.RemovesExistingAtoms (5 ms) +36: [ OK ] SetAtomsTest.RemovesExistingAtoms (6 ms) 36: [ RUN ] SetAtomsTest.AddsNewAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -67404,7 +67337,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.AddsNewAtoms (5 ms) +36: [ OK ] SetAtomsTest.AddsNewAtoms (2 ms) 36: [ RUN ] SetAtomsTest.ThrowsOnRequiredAtomsNotAvailable 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -67414,7 +67347,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.ThrowsOnRequiredAtomsNotAvailable (4 ms) +36: [ OK ] SetAtomsTest.ThrowsOnRequiredAtomsNotAvailable (6 ms) 36: [ RUN ] SetAtomsTest.WillUseOldAtomsWhenNoNewAvailable 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -67424,7 +67357,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.WillUseOldAtomsWhenNoNewAvailable (4 ms) +36: [ OK ] SetAtomsTest.WillUseOldAtomsWhenNoNewAvailable (10 ms) 36: [ RUN ] SetAtomsTest.ThrowsWhenUserAtomReplacementNotPossible 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -67434,8 +67367,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.ThrowsWhenUserAtomReplacementNotPossible (4 ms) -36: [----------] 5 tests from SetAtomsTest (22 ms total) +36: [ OK ] SetAtomsTest.ThrowsWhenUserAtomReplacementNotPossible (3 ms) +36: [----------] 5 tests from SetAtomsTest (27 ms total) 36: 36: [----------] 2 tests from SetBothTimeTest 36: [ RUN ] SetBothTimeTest.StartTimeZeroWorks @@ -67466,7 +67399,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/0 (4 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/0 (6 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -67476,7 +67409,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/1 (4 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/1 (2 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -67486,7 +67419,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/2 (3 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/2 (10 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/3 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -67496,7 +67429,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/3 (3 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/3 (2 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/4 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -67506,7 +67439,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/4 (3 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/4 (7 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/5 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -67516,8 +67449,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/5 (3 ms) -36: [----------] 6 tests from CoordinateFileFileFormats/TrajectoryFrameWriterTest (20 ms total) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/5 (2 ms) +36: [----------] 6 tests from CoordinateFileFileFormats/TrajectoryFrameWriterTest (29 ms total) 36: 36: [----------] 3 tests from ModuleSupported/SetAtomsSupportedFiles 36: [ RUN ] ModuleSupported/SetAtomsSupportedFiles.Works/0 @@ -67529,7 +67462,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/0 (3 ms) +36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/0 (6 ms) 36: [ RUN ] ModuleSupported/SetAtomsSupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -67539,7 +67472,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/1 (3 ms) +36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/1 (6 ms) 36: [ RUN ] ModuleSupported/SetAtomsSupportedFiles.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -67550,7 +67483,7 @@ 36: files if necessary. 36: 36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/2 (2 ms) -36: [----------] 3 tests from ModuleSupported/SetAtomsSupportedFiles (8 ms total) +36: [----------] 3 tests from ModuleSupported/SetAtomsSupportedFiles (14 ms total) 36: 36: [----------] 3 tests from ModuleUnSupported/SetAtomsUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/0 @@ -67579,7 +67512,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/0 (5 ms) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/0 (13 ms) 36: [ RUN ] ModuleSupported/AnyOutputSupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -67597,7 +67530,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/1 (5 ms) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/1 (10 ms) 36: [ RUN ] ModuleSupported/AnyOutputSupportedFiles.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -67615,7 +67548,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/2 (5 ms) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/2 (13 ms) 36: [ RUN ] ModuleSupported/AnyOutputSupportedFiles.Works/3 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -67633,8 +67566,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/3 (5 ms) -36: [----------] 4 tests from ModuleSupported/AnyOutputSupportedFiles (20 ms total) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/3 (8 ms) +36: [----------] 4 tests from ModuleSupported/AnyOutputSupportedFiles (44 ms total) 36: 36: [----------] 3 tests from ModuleSupported/SetVelocitySupportedFiles 36: [ RUN ] ModuleSupported/SetVelocitySupportedFiles.Works/0 @@ -67646,7 +67579,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/0 (2 ms) +36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/0 (3 ms) 36: [ RUN ] ModuleSupported/SetVelocitySupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -67656,7 +67589,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/1 (3 ms) +36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/1 (2 ms) 36: [ RUN ] ModuleSupported/SetVelocitySupportedFiles.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -67666,8 +67599,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/2 (2 ms) -36: [----------] 3 tests from ModuleSupported/SetVelocitySupportedFiles (7 ms total) +36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/2 (10 ms) +36: [----------] 3 tests from ModuleSupported/SetVelocitySupportedFiles (15 ms total) 36: 36: [----------] 3 tests from ModuleUnSupported/SetVelocityUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetVelocityUnSupportedFiles.Works/0 @@ -67698,19 +67631,19 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetForceSupportedFiles.Works/1 (2 ms) -36: [----------] 2 tests from ModuleSupported/SetForceSupportedFiles (4 ms total) +36: [ OK ] ModuleSupported/SetForceSupportedFiles.Works/1 (6 ms) +36: [----------] 2 tests from ModuleSupported/SetForceSupportedFiles (8 ms total) 36: 36: [----------] 4 tests from ModuleUnSupported/SetForceUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetForceUnSupportedFiles.Works/0 36: [ OK ] ModuleUnSupported/SetForceUnSupportedFiles.Works/0 (0 ms) 36: [ RUN ] ModuleUnSupported/SetForceUnSupportedFiles.Works/1 -36: [ OK ] ModuleUnSupported/SetForceUnSupportedFiles.Works/1 (0 ms) +36: [ OK ] ModuleUnSupported/SetForceUnSupportedFiles.Works/1 (1 ms) 36: [ RUN ] ModuleUnSupported/SetForceUnSupportedFiles.Works/2 36: [ OK ] ModuleUnSupported/SetForceUnSupportedFiles.Works/2 (0 ms) 36: [ RUN ] ModuleUnSupported/SetForceUnSupportedFiles.Works/3 36: [ OK ] ModuleUnSupported/SetForceUnSupportedFiles.Works/3 (0 ms) -36: [----------] 4 tests from ModuleUnSupported/SetForceUnSupportedFiles (0 ms total) +36: [----------] 4 tests from ModuleUnSupported/SetForceUnSupportedFiles (1 ms total) 36: 36: [----------] 2 tests from ModuleSupported/SetPrecisionSupportedFiles 36: [ RUN ] ModuleSupported/SetPrecisionSupportedFiles.Works/0 @@ -67732,8 +67665,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetPrecisionSupportedFiles.Works/1 (2 ms) -36: [----------] 2 tests from ModuleSupported/SetPrecisionSupportedFiles (4 ms total) +36: [ OK ] ModuleSupported/SetPrecisionSupportedFiles.Works/1 (10 ms) +36: [----------] 2 tests from ModuleSupported/SetPrecisionSupportedFiles (12 ms total) 36: 36: [----------] 4 tests from ModuleUnSupported/SetPrecisionUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/0 @@ -67741,10 +67674,10 @@ 36: [ RUN ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/1 36: [ OK ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/1 (0 ms) 36: [ RUN ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/2 -36: [ OK ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/2 (1 ms) +36: [ OK ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/2 (0 ms) 36: [ RUN ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/3 36: [ OK ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/3 (0 ms) -36: [----------] 4 tests from ModuleUnSupported/SetPrecisionUnSupportedFiles (1 ms total) +36: [----------] 4 tests from ModuleUnSupported/SetPrecisionUnSupportedFiles (0 ms total) 36: 36: [----------] 4 tests from ModuleSupported/NoOptionalOutput 36: [ RUN ] ModuleSupported/NoOptionalOutput.Works/0 @@ -67756,7 +67689,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/NoOptionalOutput.Works/0 (1 ms) +36: [ OK ] ModuleSupported/NoOptionalOutput.Works/0 (6 ms) 36: [ RUN ] ModuleSupported/NoOptionalOutput.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -67776,7 +67709,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/NoOptionalOutput.Works/2 (2 ms) +36: [ OK ] ModuleSupported/NoOptionalOutput.Works/2 (6 ms) 36: [ RUN ] ModuleSupported/NoOptionalOutput.Works/3 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -67786,13 +67719,13 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/NoOptionalOutput.Works/3 (1 ms) -36: [----------] 4 tests from ModuleSupported/NoOptionalOutput (8 ms total) +36: [ OK ] ModuleSupported/NoOptionalOutput.Works/3 (2 ms) +36: [----------] 4 tests from ModuleSupported/NoOptionalOutput (17 ms total) 36: 36: [----------] Global test environment tear-down -36: [==========] 64 tests from 19 test cases ran. (131 ms total) +36: [==========] 64 tests from 19 test cases ran. (206 ms total) 36: [ PASSED ] 64 tests. -36/54 Test #36: CoordinateIOTests ................... Passed 0.15 sec +36/54 Test #36: CoordinateIOTests ................... Passed 0.24 sec test 37 Start 37: TrajectoryAnalysisUnitTests @@ -67809,7 +67742,7 @@ 37: Total number of atoms in clusters = 24 37: cmid: 2, cmax: 4, max_size: 6 37: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6 -37: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolDefaultCutoff (2 ms) +37: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolDefaultCutoff (1 ms) 37: [ RUN ] ClustsizeTest.NoMolShortCutoff 37: Reading frames from pdb file Reading frame 0 time 0.000 Group 0 ( SOL) has 24 elements 37: There is one group in the index @@ -67818,7 +67751,7 @@ 37: Total number of atoms in clusters = 24 37: cmid: 1, cmax: 6, max_size: 6 37: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6 -37: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolShortCutoff (1 ms) +37: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolShortCutoff (0 ms) 37: [ RUN ] ClustsizeTest.MolDefaultCutoff 37: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -67827,7 +67760,7 @@ 37: Total number of atoms in clusters = 8 37: cmid: 2, cmax: 4, max_size: 2 37: 50%100%cmid: 2, cmax: 6, max_size: 2 -37: 50%100%[ OK ] ClustsizeTest.MolDefaultCutoff (2 ms) +37: 50%100%[ OK ] ClustsizeTest.MolDefaultCutoff (1 ms) 37: [ RUN ] ClustsizeTest.MolShortCutoff 37: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -67836,7 +67769,7 @@ 37: Total number of atoms in clusters = 8 37: cmid: 1, cmax: 6, max_size: 2 37: 50%100%cmid: 2, cmax: 6, max_size: 2 -37: 50%100%[ OK ] ClustsizeTest.MolShortCutoff (2 ms) +37: 50%100%[ OK ] ClustsizeTest.MolShortCutoff (1 ms) 37: [ RUN ] ClustsizeTest.MolCSize 37: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -67845,12 +67778,12 @@ 37: Total number of atoms in clusters = 8 37: cmid: 2, cmax: 4, max_size: 2 37: 50%100%cmid: 2, cmax: 6, max_size: 2 -37: 50%100%[ OK ] ClustsizeTest.MolCSize (2 ms) -37: [----------] 5 tests from ClustsizeTest (10 ms total) +37: 50%100%[ OK ] ClustsizeTest.MolCSize (1 ms) +37: [----------] 5 tests from ClustsizeTest (4 ms total) 37: 37: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest 37: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp -37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp (1 ms) +37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp (0 ms) 37: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory 37: Reading frames from gro file 'Test system', 8 atoms. 37: Reading frame 0 time 0.000 @@ -67869,7 +67802,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory (4 ms) +37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory (2 ms) 37: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset 37: Reading frames from gro file 'Test system', 8 atoms. 37: Reading frame 0 time 0.000 @@ -67886,10 +67819,10 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (4 ms) +37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (9 ms) 37: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory 37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory (1 ms) -37: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (10 ms total) +37: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (12 ms total) 37: 37: [----------] 11 tests from AngleModuleTest 37: [ RUN ] AngleModuleTest.ComputesSimpleAngles @@ -67908,7 +67841,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesSimpleAngles (4 ms) +37: [ OK ] AngleModuleTest.ComputesSimpleAngles (2 ms) 37: [ RUN ] AngleModuleTest.ComputesDihedrals 37: 37: WARNING: If there are molecules in the input trajectory file @@ -67925,7 +67858,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesDihedrals (4 ms) +37: [ OK ] AngleModuleTest.ComputesDihedrals (5 ms) 37: [ RUN ] AngleModuleTest.ComputesVectorPairAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -67942,7 +67875,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesVectorPairAngles (4 ms) +37: [ OK ] AngleModuleTest.ComputesVectorPairAngles (2 ms) 37: [ RUN ] AngleModuleTest.ComputesVectorPlanePairAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -67959,7 +67892,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (4 ms) +37: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (1 ms) 37: [ RUN ] AngleModuleTest.ComputesPlaneZAxisAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -67976,7 +67909,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesPlaneZAxisAngles (4 ms) +37: [ OK ] AngleModuleTest.ComputesPlaneZAxisAngles (9 ms) 37: [ RUN ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -67993,7 +67926,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles (4 ms) +37: [ OK ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles (2 ms) 37: [ RUN ] AngleModuleTest.ComputesVectorTimeZeroAngles 37: Reading frames from gro file 'Test system for different angles', 33 atoms. 37: Reading frame 0 time 0.000 @@ -68012,7 +67945,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesVectorTimeZeroAngles (3 ms) +37: [ OK ] AngleModuleTest.ComputesVectorTimeZeroAngles (2 ms) 37: [ RUN ] AngleModuleTest.ComputesMultipleAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -68029,7 +67962,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesMultipleAngles (4 ms) +37: [ OK ] AngleModuleTest.ComputesMultipleAngles (1 ms) 37: [ RUN ] AngleModuleTest.HandlesDynamicSelections 37: 37: WARNING: If there are molecules in the input trajectory file @@ -68046,7 +67979,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.HandlesDynamicSelections (3 ms) +37: [ OK ] AngleModuleTest.HandlesDynamicSelections (2 ms) 37: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -68063,7 +67996,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorAngles (2 ms) +37: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorAngles (9 ms) 37: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -68081,7 +68014,7 @@ 37: files if necessary. 37: 37: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles (2 ms) -37: [----------] 11 tests from AngleModuleTest (39 ms total) +37: [----------] 11 tests from AngleModuleTest (38 ms total) 37: 37: [----------] 4 tests from ConvertTrjModuleTest 37: [ RUN ] ConvertTrjModuleTest.WritesNormalOutput @@ -68089,20 +68022,20 @@ 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: Analyzed 1 frames, last time 0.000 -37: [ OK ] ConvertTrjModuleTest.WritesNormalOutput (10 ms) +37: [ OK ] ConvertTrjModuleTest.WritesNormalOutput (14 ms) 37: [ RUN ] ConvertTrjModuleTest.WritesAtomSubset 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: Analyzed 1 frames, last time 0.000 -37: [ OK ] ConvertTrjModuleTest.WritesAtomSubset (9 ms) +37: [ OK ] ConvertTrjModuleTest.WritesAtomSubset (15 ms) 37: [ RUN ] ConvertTrjModuleTest.WorksWithAtomAdding 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading frames from pdb file Reading frame 0 time 0.000 '', 24 atoms 37: Reading frame 1 time 0.000 Last frame 1 time 0.000 37: Analyzed 2 frames, last time 0.000 -37: [ OK ] ConvertTrjModuleTest.WorksWithAtomAdding (2 ms) +37: [ OK ] ConvertTrjModuleTest.WorksWithAtomAdding (1 ms) 37: [ RUN ] ConvertTrjModuleTest.WorksWithAtomsAndSelection 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -68110,7 +68043,7 @@ 37: Reading frame 1 time 0.000 Last frame 1 time 0.000 37: Analyzed 2 frames, last time 0.000 37: [ OK ] ConvertTrjModuleTest.WorksWithAtomsAndSelection (1 ms) -37: [----------] 4 tests from ConvertTrjModuleTest (22 ms total) +37: [----------] 4 tests from ConvertTrjModuleTest (35 ms total) 37: 37: [----------] 3 tests from DistanceModuleTest 37: [ RUN ] DistanceModuleTest.ComputesDistances @@ -68133,7 +68066,7 @@ 37: Number of samples: 5 37: Average distance: 1.43246 nm 37: Standard deviation: 0.96700 nm -37: [ OK ] DistanceModuleTest.ComputesDistances (3 ms) +37: [ OK ] DistanceModuleTest.ComputesDistances (2 ms) 37: [ RUN ] DistanceModuleTest.ComputesMultipleDistances 37: 37: WARNING: If there are molecules in the input trajectory file @@ -68158,7 +68091,7 @@ 37: Number of samples: 4 37: Average distance: 1.81066 nm 37: Standard deviation: 0.79289 nm -37: [ OK ] DistanceModuleTest.ComputesMultipleDistances (3 ms) +37: [ OK ] DistanceModuleTest.ComputesMultipleDistances (10 ms) 37: [ RUN ] DistanceModuleTest.HandlesDynamicSelections 37: 37: WARNING: If there are molecules in the input trajectory file @@ -68179,8 +68112,8 @@ 37: Number of samples: 3 37: Average distance: 1.72076 nm 37: Standard deviation: 1.24839 nm -37: [ OK ] DistanceModuleTest.HandlesDynamicSelections (2 ms) -37: [----------] 3 tests from DistanceModuleTest (8 ms total) +37: [ OK ] DistanceModuleTest.HandlesDynamicSelections (6 ms) +37: [----------] 3 tests from DistanceModuleTest (18 ms total) 37: 37: [----------] 2 tests from ExtractClusterModuleTest 37: [ RUN ] ExtractClusterModuleTest.WorksWithAllAtoms @@ -68188,13 +68121,13 @@ 37: Reading frame 0 time 0.000 Reading frame 1 time 0.002 Reading frame 2 time 0.004 Reading frame 3 time 0.006 Reading frame 4 time 0.008 Reading frame 5 time 0.010 Reading frame 6 time 0.012 Reading frame 7 time 0.014 Reading frame 8 time 0.016 Reading frame 9 time 0.018 Reading frame 10 time 0.020 Reading frame 11 time 0.022 Reading frame 12 time 0.024 Reading frame 13 time 0.026 Reading frame 14 time 0.028 Reading frame 15 time 0.030 Reading frame 16 time 0.032 Reading frame 17 time 0.034 Reading frame 18 time 0.036 Reading frame 19 time 0.038 Reading frame 20 time 0.040 37: Analyzed 26 frames, last time 0.050 37: There are 8 clusters containing 26 structures, highest framenr is 25 -37: [ OK ] ExtractClusterModuleTest.WorksWithAllAtoms (2 ms) +37: [ OK ] ExtractClusterModuleTest.WorksWithAllAtoms (1 ms) 37: [ RUN ] ExtractClusterModuleTest.WorksWithAtomSubset 37: Reading frame 0 time 0.000 Reading frame 1 time 0.002 Reading frame 2 time 0.004 Reading frame 3 time 0.006 Reading frame 4 time 0.008 Reading frame 5 time 0.010 Reading frame 6 time 0.012 Reading frame 7 time 0.014 Reading frame 8 time 0.016 Reading frame 9 time 0.018 Reading frame 10 time 0.020 Reading frame 11 time 0.022 Reading frame 12 time 0.024 Reading frame 13 time 0.026 Reading frame 14 time 0.028 Reading frame 15 time 0.030 Reading frame 16 time 0.032 Reading frame 17 time 0.034 Reading frame 18 time 0.036 Reading frame 19 time 0.038 Reading frame 20 time 0.040 37: Analyzed 26 frames, last time 0.050 37: There are 8 clusters containing 26 structures, highest framenr is 25 37: [ OK ] ExtractClusterModuleTest.WorksWithAtomSubset (1 ms) -37: [----------] 2 tests from ExtractClusterModuleTest (3 ms total) +37: [----------] 2 tests from ExtractClusterModuleTest (2 ms total) 37: 37: [----------] 2 tests from FreeVolumeModuleTest 37: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolume @@ -68258,7 +68191,7 @@ 37: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 37: Molecular van der Waals volume assuming homogeneity: 0.1256 +/- 0.0000 nm^3 37: Fractional free volume 0.194 +/- 0.000 -37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (56 ms) +37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (118 ms) 37: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolumeSelection 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) @@ -68310,8 +68243,8 @@ 37: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 37: Molecular van der Waals volume assuming homogeneity: 0.1247 +/- 0.0000 nm^3 37: Fractional free volume 0.200 +/- 0.000 -37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (49 ms) -37: [----------] 2 tests from FreeVolumeModuleTest (105 ms total) +37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (52 ms) +37: [----------] 2 tests from FreeVolumeModuleTest (170 ms total) 37: 37: [----------] 9 tests from PairDistanceModuleTest 37: [ RUN ] PairDistanceModuleTest.ComputesAllDistances @@ -68330,7 +68263,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesAllDistances (2 ms) +37: [ OK ] PairDistanceModuleTest.ComputesAllDistances (3 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -68347,7 +68280,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff (2 ms) +37: [ OK ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff (1 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -68364,7 +68297,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff (1 ms) +37: [ OK ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff (2 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesMaxDistance 37: 37: WARNING: If there are molecules in the input trajectory file @@ -68381,7 +68314,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (2 ms) +37: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (1 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -68398,7 +68331,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff (2 ms) +37: [ OK ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff (5 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -68415,7 +68348,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff (1 ms) +37: [ OK ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff (2 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -68432,7 +68365,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (2 ms) +37: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (1 ms) 37: [ RUN ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwritten 37: 37: WARNING: If there are molecules in the input trajectory file @@ -68449,7 +68382,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwritten (1 ms) +37: [ OK ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwritten (3 ms) 37: [ RUN ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwrittenWithExplicitGroup 37: 37: WARNING: If there are molecules in the input trajectory file @@ -68467,7 +68400,7 @@ 37: files if necessary. 37: 37: [ OK ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwrittenWithExplicitGroup (2 ms) -37: [----------] 9 tests from PairDistanceModuleTest (15 ms total) +37: [----------] 9 tests from PairDistanceModuleTest (20 ms total) 37: 37: [----------] 5 tests from RdfModuleTest 37: [ RUN ] RdfModuleTest.BasicTest @@ -68486,12 +68419,12 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.BasicTest (13 ms) +37: [ OK ] RdfModuleTest.BasicTest (15 ms) 37: [ RUN ] RdfModuleTest.SelectionsSolelyFromIndexFileWork 37: Reading frames from gro file '216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984', 648 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: Analyzed 1 frames, last time 0.000 -37: [ OK ] RdfModuleTest.SelectionsSolelyFromIndexFileWork (9 ms) +37: [ OK ] RdfModuleTest.SelectionsSolelyFromIndexFileWork (10 ms) 37: [ RUN ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork 37: 37: WARNING: If there are molecules in the input trajectory file @@ -68508,7 +68441,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork (13 ms) +37: [ OK ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork (14 ms) 37: [ RUN ] RdfModuleTest.CalculatesSurf 37: 37: WARNING: If there are molecules in the input trajectory file @@ -68525,7 +68458,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.CalculatesSurf (8 ms) +37: [ OK ] RdfModuleTest.CalculatesSurf (9 ms) 37: [ RUN ] RdfModuleTest.CalculatesXY 37: 37: WARNING: If there are molecules in the input trajectory file @@ -68542,8 +68475,8 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.CalculatesXY (15 ms) -37: [----------] 5 tests from RdfModuleTest (58 ms total) +37: [ OK ] RdfModuleTest.CalculatesXY (16 ms) +37: [----------] 5 tests from RdfModuleTest (64 ms total) 37: 37: [----------] 5 tests from SasaModuleTest 37: [ RUN ] SasaModuleTest.BasicTest @@ -68590,7 +68523,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.BasicTest (6 ms) +37: [ OK ] SasaModuleTest.BasicTest (7 ms) 37: [ RUN ] SasaModuleTest.HandlesSelectedResidues 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -68635,7 +68568,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.HandlesSelectedResidues (4 ms) +37: [ OK ] SasaModuleTest.HandlesSelectedResidues (6 ms) 37: [ RUN ] SasaModuleTest.WritesConnollySurfaceWithSolute 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -68680,7 +68613,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.WritesConnollySurfaceWithSolute (3 ms) +37: [ OK ] SasaModuleTest.WritesConnollySurfaceWithSolute (4 ms) 37: [ RUN ] SasaModuleTest.HandlesDynamicOutputGroup 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -68770,8 +68703,8 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (5 ms) -37: [----------] 5 tests from SasaModuleTest (24 ms total) +37: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (6 ms) +37: [----------] 5 tests from SasaModuleTest (29 ms total) 37: 37: [----------] 8 tests from SelectModuleTest 37: [ RUN ] SelectModuleTest.BasicTest @@ -68811,7 +68744,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (2 ms) +37: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (3 ms) 37: [ RUN ] SelectModuleTest.HandlesPDBOutputWithPDBInput 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -68830,7 +68763,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (2 ms) +37: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (3 ms) 37: [ RUN ] SelectModuleTest.HandlesMaxPDBOutput 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -68868,7 +68801,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (2 ms) +37: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (3 ms) 37: [ RUN ] SelectModuleTest.NormalizesSizes 37: 37: WARNING: If there are molecules in the input trajectory file @@ -68902,7 +68835,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.WritesResidueNumbers (1 ms) +37: [ OK ] SelectModuleTest.WritesResidueNumbers (2 ms) 37: [ RUN ] SelectModuleTest.WritesResidueIndices 37: 37: WARNING: If there are molecules in the input trajectory file @@ -68919,16 +68852,16 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.WritesResidueIndices (2 ms) -37: [----------] 8 tests from SelectModuleTest (16 ms total) +37: [ OK ] SelectModuleTest.WritesResidueIndices (1 ms) +37: [----------] 8 tests from SelectModuleTest (19 ms total) 37: 37: [----------] 10 tests from SurfaceAreaTest 37: [ RUN ] SurfaceAreaTest.ComputesSinglePoint 37: [ OK ] SurfaceAreaTest.ComputesSinglePoint (0 ms) 37: [ RUN ] SurfaceAreaTest.ComputesTwoPoints -37: [ OK ] SurfaceAreaTest.ComputesTwoPoints (0 ms) +37: [ OK ] SurfaceAreaTest.ComputesTwoPoints (1 ms) 37: [ RUN ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius -37: [ OK ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius (1 ms) +37: [ OK ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius (0 ms) 37: [ RUN ] SurfaceAreaTest.SurfacePoints12 37: [ OK ] SurfaceAreaTest.SurfacePoints12 (0 ms) 37: [ RUN ] SurfaceAreaTest.SurfacePoints32 @@ -68942,12 +68875,12 @@ 37: [ RUN ] SurfaceAreaTest.Computes100PointsWithRectangularPBC 37: [ OK ] SurfaceAreaTest.Computes100PointsWithRectangularPBC (1 ms) 37: [ RUN ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC -37: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (1 ms) -37: [----------] 10 tests from SurfaceAreaTest (4 ms total) +37: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (2 ms) +37: [----------] 10 tests from SurfaceAreaTest (6 ms total) 37: 37: [----------] 4 tests from TopologyInformation 37: [ RUN ] TopologyInformation.CantWorkWithoutReadingAFile -37: [ OK ] TopologyInformation.CantWorkWithoutReadingAFile (1 ms) +37: [ OK ] TopologyInformation.CantWorkWithoutReadingAFile (0 ms) 37: [ RUN ] TopologyInformation.WorksWithGroFile 37: 37: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -68957,7 +68890,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TopologyInformation.WorksWithGroFile (1 ms) +37: [ OK ] TopologyInformation.WorksWithGroFile (2 ms) 37: [ RUN ] TopologyInformation.WorksWithPdbFile 37: 37: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -68974,7 +68907,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -275400714 +37: Setting the LD random seed to -538448145 37: Generated 330891 of the 330891 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 330891 of the 330891 1-4 parameter combinations @@ -69008,8 +68941,8 @@ 37: There are: 10 Protein residues 37: Analysing Protein... 37: This run will generate roughly 0 Mb of data -37: [ OK ] TopologyInformation.WorksWithTprFromPdbFile (278 ms) -37: [----------] 4 tests from TopologyInformation (282 ms total) +37: [ OK ] TopologyInformation.WorksWithTprFromPdbFile (316 ms) +37: [----------] 4 tests from TopologyInformation (320 ms total) 37: 37: [----------] 4 tests from TrajectoryModuleTest 37: [ RUN ] TrajectoryModuleTest.BasicTest @@ -69109,9 +69042,9 @@ 37: [----------] 1 test from MappedUnionFinderTest (0 ms total) 37: 37: [----------] Global test environment tear-down -37: [==========] 82 tests from 16 test cases ran. (603 ms total) +37: [==========] 82 tests from 16 test cases ran. (744 ms total) 37: [ PASSED ] 82 tests. -37/54 Test #37: TrajectoryAnalysisUnitTests ......... Passed 0.63 sec +37/54 Test #37: TrajectoryAnalysisUnitTests ......... Passed 0.78 sec test 38 Start 38: EnergyAnalysisUnitTests @@ -69128,8 +69061,8 @@ 38: 38: 38: Wrote 8 lambda values with 101 samples as 808 dH data blocks to /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary/DhdlTest_ExtractDhdl_dhdl.xvg -38: [ OK ] DhdlTest.ExtractDhdl (5 ms) -38: [----------] 1 test from DhdlTest (5 ms total) +38: [ OK ] DhdlTest.ExtractDhdl (7 ms) +38: [----------] 1 test from DhdlTest (7 ms total) 38: 38: [----------] 1 test from OriresTest 38: [ RUN ] OriresTest.ExtractOrires @@ -69140,8 +69073,8 @@ 38: End your selection with 0 38: Selecting all 7 orientation restraints 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Reading energy frame 2 time 0.004 Reading energy frame 3 time 0.006 Reading energy frame 4 time 0.008 Reading energy frame 5 time 0.010 Reading energy frame 6 time 0.012 Reading energy frame 7 time 0.014 Reading energy frame 8 time 0.016 Reading energy frame 9 time 0.018 Reading energy frame 10 time 0.020 Last energy frame read 10 time 0.020 -38: [ OK ] OriresTest.ExtractOrires (7 ms) -38: [----------] 1 test from OriresTest (7 ms total) +38: [ OK ] OriresTest.ExtractOrires (8 ms) +38: [----------] 1 test from OriresTest (8 ms total) 38: 38: [----------] 3 tests from EnergyTest 38: [ RUN ] EnergyTest.ExtractEnergy @@ -69231,7 +69164,7 @@ 38: Pressure 5.34371 4.1 605.307 -4.88771 (bar) 38: Box-Z 2.92457 0.0054 0.0151558 0.0234974 (nm) 38: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) -38: [ OK ] EnergyTest.ExtractEnergyMixed (1 ms) +38: [ OK ] EnergyTest.ExtractEnergyMixed (2 ms) 38: [----------] 3 tests from EnergyTest (4 ms total) 38: 38: [----------] 2 tests from ViscosityTest @@ -69256,7 +69189,7 @@ 38: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 38: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 38: Pressure 5.34371 4.1 605.307 -4.88771 (bar) -38: [ OK ] ViscosityTest.EinsteinViscosity (22 ms) +38: [ OK ] ViscosityTest.EinsteinViscosity (33 ms) 38: [ RUN ] ViscosityTest.EinsteinViscosityIntegral 38: Opened /build/reproducible-path/gromacs-2020.6/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 @@ -69278,13 +69211,13 @@ 38: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 38: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 38: Pressure 5.34371 4.1 605.307 -4.88771 (bar) -38: [ OK ] ViscosityTest.EinsteinViscosityIntegral (21 ms) -38: [----------] 2 tests from ViscosityTest (44 ms total) +38: [ OK ] ViscosityTest.EinsteinViscosityIntegral (27 ms) +38: [----------] 2 tests from ViscosityTest (60 ms total) 38: 38: [----------] Global test environment tear-down -38: [==========] 7 tests from 4 test cases ran. (60 ms total) +38: [==========] 7 tests from 4 test cases ran. (79 ms total) 38: [ PASSED ] 7 tests. -38/54 Test #38: EnergyAnalysisUnitTests ............. Passed 0.07 sec +38/54 Test #38: EnergyAnalysisUnitTests ............. Passed 0.09 sec test 39 Start 39: ToolUnitTests @@ -69298,7 +69231,7 @@ 39: For a correct single-point energy evaluation with nsteps = 0, use 39: continuation = yes to avoid constraining the input coordinates. 39: -39: Setting the LD random seed to -1094976137 +39: Setting the LD random seed to -276979713 39: Generated 330891 of the 330891 non-bonded parameter combinations 39: Generating 1-4 interactions: fudge = 0.5 39: Generated 330891 of the 330891 1-4 parameter combinations @@ -69344,7 +69277,7 @@ 39: comm-mode = Linear 39: nstcomm = 100 39: bd-fric = 0 -39: ld-seed = -1094976137 +39: ld-seed = -276979713 39: emtol = 10 39: emstep = 0.01 39: niter = 20 @@ -72261,12 +72194,12 @@ 39: Compressed X: 156 (total 156 atoms) 39: Or. Res. Fit: 156 (total 156 atoms) 39: QMMM : 156 (total 156 atoms) -39: [ OK ] DumpTest.WorksWithTpr (68 ms) +39: [ OK ] DumpTest.WorksWithTpr (18 ms) 39: [ RUN ] DumpTest.WorksWithTprAndMdpWriting 39: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary/DumpTest_lysozyme.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 39: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary/DumpTest_lysozyme.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 39: [ OK ] DumpTest.WorksWithTprAndMdpWriting (1 ms) -39: [----------] 2 tests from DumpTest (69 ms total) +39: [----------] 2 tests from DumpTest (19 ms total) 39: 39: [----------] 4 tests from ReportMethodsTest 39: @@ -72274,7 +72207,7 @@ 39: For a correct single-point energy evaluation with nsteps = 0, use 39: continuation = yes to avoid constraining the input coordinates. 39: -39: Setting the LD random seed to 1977514495 +39: Setting the LD random seed to -1641382401 39: Generated 330891 of the 330891 non-bonded parameter combinations 39: Generating 1-4 interactions: fudge = 0.5 39: Generated 330891 of the 330891 1-4 parameter combinations @@ -72353,7 +72286,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 (1 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 (13 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2 39: Will write tng: Trajectory file (tng format) 39: Group 0 ( System) has 6 elements @@ -72403,8 +72336,8 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (0 ms) -39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (6 ms total) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (1 ms) +39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (18 ms total) 39: 39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 @@ -72417,7 +72350,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 (0 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 (1 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/1 39: Will write trr: Trajectory in portable xdr format 39: Group 0 ( System) has 6 elements @@ -72455,7 +72388,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 (1 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 (0 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 39: Will write trr: Trajectory in portable xdr format 39: Group 0 ( System) has 6 elements @@ -72469,7 +72402,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 (0 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 (1 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 39: Will write trr: Trajectory in portable xdr format 39: Group 0 ( System) has 6 elements @@ -72481,12 +72414,12 @@ 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' 39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 (0 ms) -39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile (1 ms total) +39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile (2 ms total) 39: 39: [----------] Global test environment tear-down -39: [==========] 18 tests from 4 test cases ran. (670 ms total) +39: [==========] 18 tests from 4 test cases ran. (1446 ms total) 39: [ PASSED ] 18 tests. -39/54 Test #39: ToolUnitTests ....................... Passed 0.69 sec +39/54 Test #39: ToolUnitTests ....................... Passed 1.48 sec test 40 Start 40: FileIOTests @@ -72496,10 +72429,10 @@ 40: [----------] Global test environment set-up. 40: [----------] 2 tests from FileMD5Test 40: [ RUN ] FileMD5Test.CanComputeMD5 -40: [ OK ] FileMD5Test.CanComputeMD5 (1 ms) +40: [ OK ] FileMD5Test.CanComputeMD5 (9 ms) 40: [ RUN ] FileMD5Test.ReturnsErrorIfFileModeIsWrong 40: [ OK ] FileMD5Test.ReturnsErrorIfFileModeIsWrong (0 ms) -40: [----------] 2 tests from FileMD5Test (1 ms total) +40: [----------] 2 tests from FileMD5Test (9 ms total) 40: 40: [----------] 3 tests from MrcSerializer 40: [ RUN ] MrcSerializer.DefaultHeaderValuesAreSet @@ -72519,7 +72452,7 @@ 40: [ OK ] MrcDensityMap.ReadsCoordinateTransformationFromFile (0 ms) 40: [ RUN ] MrcDensityMap.ReadsDensityDataFromFile 40: [ OK ] MrcDensityMap.ReadsDensityDataFromFile (0 ms) -40: [----------] 4 tests from MrcDensityMap (1 ms total) +40: [----------] 4 tests from MrcDensityMap (2 ms total) 40: 40: [----------] 8 tests from MrcDensityMapHeaderTest 40: [ RUN ] MrcDensityMapHeaderTest.DataSizeIsZeroForDefaultHeader @@ -72529,7 +72462,7 @@ 40: [ RUN ] MrcDensityMapHeaderTest.DataSizeThrowsWhenInvalid 40: [ OK ] MrcDensityMapHeaderTest.DataSizeThrowsWhenInvalid (0 ms) 40: [ RUN ] MrcDensityMapHeaderTest.GetsCorrectCoordinateTransformNoOriginGiven -40: [ OK ] MrcDensityMapHeaderTest.GetsCorrectCoordinateTransformNoOriginGiven (1 ms) +40: [ OK ] MrcDensityMapHeaderTest.GetsCorrectCoordinateTransformNoOriginGiven (0 ms) 40: [ RUN ] MrcDensityMapHeaderTest.GetsCorrectCoordinateTransformWithOriginDefined 40: [ OK ] MrcDensityMapHeaderTest.GetsCorrectCoordinateTransformWithOriginDefined (0 ms) 40: [ RUN ] MrcDensityMapHeaderTest.GetsCorrectCoordinateTransformWithStartValues @@ -72538,7 +72471,7 @@ 40: [ OK ] MrcDensityMapHeaderTest.GetsCorrectExtents (0 ms) 40: [ RUN ] MrcDensityMapHeaderTest.IsSane 40: [ OK ] MrcDensityMapHeaderTest.IsSane (0 ms) -40: [----------] 8 tests from MrcDensityMapHeaderTest (1 ms total) +40: [----------] 8 tests from MrcDensityMapHeaderTest (0 ms total) 40: 40: [----------] 9 tests from ReadTest 40: [ RUN ] ReadTest.get_eint_ReadsInteger @@ -72613,13 +72546,13 @@ 40: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (1 ms) 40: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 -40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) -40: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (1 ms total) +40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (4 ms) +40: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (5 ms total) 40: 40: [----------] Global test environment tear-down -40: [==========] 33 tests from 8 test cases ran. (4 ms total) +40: [==========] 33 tests from 8 test cases ran. (16 ms total) 40: [ PASSED ] 33 tests. -40/54 Test #40: FileIOTests ......................... Passed 0.01 sec +40/54 Test #40: FileIOTests ......................... Passed 0.04 sec test 41 Start 41: SelectionUnitTests @@ -72634,11 +72567,11 @@ 41: 41: [----------] 15 tests from IndexBlockTest 41: [ RUN ] IndexBlockTest.CreatesUnknownBlock -41: [ OK ] IndexBlockTest.CreatesUnknownBlock (0 ms) +41: [ OK ] IndexBlockTest.CreatesUnknownBlock (1 ms) 41: [ RUN ] IndexBlockTest.CreatesAtomBlock 41: [ OK ] IndexBlockTest.CreatesAtomBlock (0 ms) 41: [ RUN ] IndexBlockTest.CreatesResidueBlocksForSimpleTopology -41: [ OK ] IndexBlockTest.CreatesResidueBlocksForSimpleTopology (1 ms) +41: [ OK ] IndexBlockTest.CreatesResidueBlocksForSimpleTopology (0 ms) 41: [ RUN ] IndexBlockTest.CreatesResidueBlocksForComplexTopology 41: [ OK ] IndexBlockTest.CreatesResidueBlocksForComplexTopology (0 ms) 41: [ RUN ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology @@ -72646,7 +72579,7 @@ 41: [ RUN ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology 41: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology (0 ms) 41: [ RUN ] IndexBlockTest.CreatesSingleBlock -41: [ OK ] IndexBlockTest.CreatesSingleBlock (1 ms) +41: [ OK ] IndexBlockTest.CreatesSingleBlock (0 ms) 41: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksPositive 41: [ OK ] IndexBlockTest.ChecksGroupForFullBlocksPositive (0 ms) 41: [ RUN ] IndexBlockTest.ChecksOutOfOrderGroupForFullBlocksPositive @@ -72663,7 +72596,7 @@ 41: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive (0 ms) 41: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative 41: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative (0 ms) -41: [----------] 15 tests from IndexBlockTest (2 ms total) +41: [----------] 15 tests from IndexBlockTest (1 ms total) 41: 41: [----------] 11 tests from IndexMapTest 41: [ RUN ] IndexMapTest.InitializesAtomBlock @@ -72673,7 +72606,7 @@ 41: [ RUN ] IndexMapTest.InitializesOrgIdGroupSingle 41: [ OK ] IndexMapTest.InitializesOrgIdGroupSingle (0 ms) 41: [ RUN ] IndexMapTest.InitializesOrgIdGroupResidue -41: [ OK ] IndexMapTest.InitializesOrgIdGroupResidue (1 ms) +41: [ OK ] IndexMapTest.InitializesOrgIdGroupResidue (0 ms) 41: [ RUN ] IndexMapTest.InitializesOrgIdGroupMolecule 41: [ OK ] IndexMapTest.InitializesOrgIdGroupMolecule (0 ms) 41: [ RUN ] IndexMapTest.InitializesOrgIdGroupAll @@ -72681,43 +72614,43 @@ 41: [ RUN ] IndexMapTest.InitializesMoleculeBlock 41: [ OK ] IndexMapTest.InitializesMoleculeBlock (0 ms) 41: [ RUN ] IndexMapTest.MapsSingleBlock -41: [ OK ] IndexMapTest.MapsSingleBlock (0 ms) +41: [ OK ] IndexMapTest.MapsSingleBlock (1 ms) 41: [ RUN ] IndexMapTest.MapsResidueBlocks 41: [ OK ] IndexMapTest.MapsResidueBlocks (0 ms) 41: [ RUN ] IndexMapTest.MapsResidueBlocksWithMask 41: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (0 ms) 41: [ RUN ] IndexMapTest.HandlesMultipleRequests -41: [ OK ] IndexMapTest.HandlesMultipleRequests (1 ms) -41: [----------] 11 tests from IndexMapTest (3 ms total) +41: [ OK ] IndexMapTest.HandlesMultipleRequests (0 ms) +41: [----------] 11 tests from IndexMapTest (1 ms total) 41: 41: [----------] 3 tests from IndexGroupsAndNamesTest 41: [ RUN ] IndexGroupsAndNamesTest.containsNames 41: [ OK ] IndexGroupsAndNamesTest.containsNames (0 ms) 41: [ RUN ] IndexGroupsAndNamesTest.throwsWhenNameMissing -41: [ OK ] IndexGroupsAndNamesTest.throwsWhenNameMissing (0 ms) +41: [ OK ] IndexGroupsAndNamesTest.throwsWhenNameMissing (1 ms) 41: [ RUN ] IndexGroupsAndNamesTest.groupIndicesCorrect 41: [ OK ] IndexGroupsAndNamesTest.groupIndicesCorrect (0 ms) -41: [----------] 3 tests from IndexGroupsAndNamesTest (0 ms total) +41: [----------] 3 tests from IndexGroupsAndNamesTest (2 ms total) 41: 41: [----------] 15 tests from NeighborhoodSearchTest 41: [ RUN ] NeighborhoodSearchTest.SimpleSearch -41: [ OK ] NeighborhoodSearchTest.SimpleSearch (23 ms) +41: [ OK ] NeighborhoodSearchTest.SimpleSearch (8 ms) 41: [ RUN ] NeighborhoodSearchTest.SimpleSearchXY -41: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (22 ms) +41: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (9 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchBox -41: [ OK ] NeighborhoodSearchTest.GridSearchBox (3 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearchBox (2 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchTriclinic -41: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (8 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (4 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearch2DPBC -41: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (4 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (2 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchNoPBC -41: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (2 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (1 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchXYBox 41: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (2 ms) 41: [ RUN ] NeighborhoodSearchTest.SimpleSelfPairsSearch 41: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (0 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSelfPairsSearch -41: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (30 ms) +41: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (21 ms) 41: [ RUN ] NeighborhoodSearchTest.HandlesConcurrentSearches 41: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (0 ms) 41: [ RUN ] NeighborhoodSearchTest.HandlesNoPBC @@ -72727,16 +72660,16 @@ 41: [ RUN ] NeighborhoodSearchTest.HandlesSkippingPairs 41: [ OK ] NeighborhoodSearchTest.HandlesSkippingPairs (0 ms) 41: [ RUN ] NeighborhoodSearchTest.SimpleSearchExclusions -41: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (2 ms) +41: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (3 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchExclusions -41: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (1 ms) -41: [----------] 15 tests from NeighborhoodSearchTest (97 ms total) +41: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (0 ms) +41: [----------] 15 tests from NeighborhoodSearchTest (52 ms total) 41: 41: [----------] 12 tests from PositionCalculationTest 41: [ RUN ] PositionCalculationTest.ComputesAtomPositions 41: [ OK ] PositionCalculationTest.ComputesAtomPositions (0 ms) 41: [ RUN ] PositionCalculationTest.ComputesResidueCOGPositions -41: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (1 ms) +41: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (0 ms) 41: [ RUN ] PositionCalculationTest.ComputesResidueCOMPositions 41: [ OK ] PositionCalculationTest.ComputesResidueCOMPositions (0 ms) 41: [ RUN ] PositionCalculationTest.ComputesGroupCOGPositions @@ -72757,33 +72690,33 @@ 41: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (0 ms) 41: [ RUN ] PositionCalculationTest.HandlesOverlappingStaticCalculations 41: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (0 ms) -41: [----------] 12 tests from PositionCalculationTest (2 ms total) +41: [----------] 12 tests from PositionCalculationTest (1 ms total) 41: 41: [----------] 29 tests from SelectionCollectionTest 41: [ RUN ] SelectionCollectionTest.HandlesNoSelections -41: [ OK ] SelectionCollectionTest.HandlesNoSelections (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesNoSelections (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType 41: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesVelocityAndForceRequests -41: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry -41: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (1 ms) 41: [ RUN ] SelectionCollectionTest.ParsesSelectionsFromFile 41: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesAtypicalWhitespace -41: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesInvalidRegularExpressions 41: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue -41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue2 41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue3 41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 -41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 -41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 @@ -72797,13 +72730,13 @@ 41: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed 41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 -41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (1 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo 41: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (0 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromMissingAtomTypes -41: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (1 ms) +41: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (0 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromMissingPDBInfo -41: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (0 ms) +41: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (1 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation 41: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation (0 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation2 @@ -72818,13 +72751,13 @@ 41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (0 ms) -41: [----------] 29 tests from SelectionCollectionTest (6 ms total) +41: [----------] 29 tests from SelectionCollectionTest (8 ms total) 41: 41: [----------] 14 tests from SelectionCollectionInteractiveTest 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesBasicInput -41: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (1 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesContinuation -41: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (0 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput 41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput @@ -72834,32 +72767,32 @@ 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections 41: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus -41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (0 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus 41: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus -41: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (1 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline 41: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesEmptySelections -41: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (0 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine 41: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput 41: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively -41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (1 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (0 ms) 41: [----------] 14 tests from SelectionCollectionInteractiveTest (4 ms total) 41: 41: [----------] 66 tests from SelectionCollectionDataTest 41: [ RUN ] SelectionCollectionDataTest.HandlesAllNone 41: [ OK ] SelectionCollectionDataTest.HandlesAllNone (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesAtomnr -41: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesResnr -41: [ OK ] SelectionCollectionDataTest.HandlesResnr (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesResnr (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesResIndex -41: [ OK ] SelectionCollectionDataTest.HandlesResIndex (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesResIndex (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesMolIndex 41: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesAtomname @@ -72887,19 +72820,19 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesCoordinateKeywords 41: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesSameResidue -41: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesSameResidueName 41: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionKeywords -41: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesDistanceKeyword -41: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesMinDistanceKeyword -41: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesWithinKeyword 41: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword -41: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (2 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (3 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPermuteModifier 41: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPlusModifier @@ -72909,15 +72842,15 @@ 41: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndCharges 41: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (1 ms) 41: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology -41: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (1 ms) +41: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets -41: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesSelectionNames 41: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections -41: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed -41: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections 41: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed @@ -72941,39 +72874,39 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesBasicBoolean 41: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters -41: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions -41: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame -41: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords 41: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods -41: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositions -41: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic 41: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesNumericComparisons 41: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesArithmeticExpressions -41: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesNumericVariables -41: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesComplexNumericVariables -41: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariables -41: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariableInModifier -41: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionInVariable -41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables 41: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis -41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables -41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables 41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesUnusedVariables @@ -72984,13 +72917,13 @@ 41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (0 ms) -41: [----------] 66 tests from SelectionCollectionDataTest (27 ms total) +41: [----------] 66 tests from SelectionCollectionDataTest (31 ms total) 41: 41: [----------] 17 tests from SelectionOptionTest 41: [ RUN ] SelectionOptionTest.ParsesSimpleSelection -41: [ OK ] SelectionOptionTest.ParsesSimpleSelection (1 ms) +41: [ OK ] SelectionOptionTest.ParsesSimpleSelection (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired -41: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (0 ms) +41: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (1 ms) 41: [ RUN ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired 41: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (0 ms) 41: [ RUN ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired @@ -72998,15 +72931,15 @@ 41: [ RUN ] SelectionOptionTest.ChecksEmptySelections 41: [ OK ] SelectionOptionTest.ChecksEmptySelections (0 ms) 41: [ RUN ] SelectionOptionTest.ChecksEmptyDelayedSelections -41: [ OK ] SelectionOptionTest.ChecksEmptyDelayedSelections (0 ms) +41: [ OK ] SelectionOptionTest.ChecksEmptyDelayedSelections (1 ms) 41: [ RUN ] SelectionOptionTest.HandlesTooManySelections -41: [ OK ] SelectionOptionTest.HandlesTooManySelections (1 ms) +41: [ OK ] SelectionOptionTest.HandlesTooManySelections (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesTooFewSelections 41: [ OK ] SelectionOptionTest.HandlesTooFewSelections (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDefaultSelectionText 41: [ OK ] SelectionOptionTest.HandlesDefaultSelectionText (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesAdjuster -41: [ OK ] SelectionOptionTest.HandlesAdjuster (0 ms) +41: [ OK ] SelectionOptionTest.HandlesAdjuster (1 ms) 41: [ RUN ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster 41: [ OK ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster @@ -73014,14 +72947,14 @@ 41: [ RUN ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster 41: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDelayedRequiredSelection -41: [ OK ] SelectionOptionTest.HandlesDelayedRequiredSelection (1 ms) +41: [ OK ] SelectionOptionTest.HandlesDelayedRequiredSelection (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections -41: [ OK ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections (0 ms) +41: [ OK ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections (1 ms) 41: [ RUN ] SelectionOptionTest.HandlesDelayedOptionalSelection 41: [ OK ] SelectionOptionTest.HandlesDelayedOptionalSelection (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster 41: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (0 ms) -41: [----------] 17 tests from SelectionOptionTest (3 ms total) +41: [----------] 17 tests from SelectionOptionTest (4 ms total) 41: 41: [----------] 9 tests from SelectionFileOptionTest 41: [ RUN ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile @@ -73031,9 +72964,9 @@ 41: [ RUN ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile 41: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (0 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFile -41: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (1 ms) +41: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (0 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet -41: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (0 ms) +41: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (1 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile 41: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (0 ms) 41: [ RUN ] SelectionFileOptionTest.GivesErrorWithNoFile @@ -73045,9 +72978,9 @@ 41: [----------] 9 tests from SelectionFileOptionTest (1 ms total) 41: 41: [----------] Global test environment tear-down -41: [==========] 192 tests from 11 test cases ran. (145 ms total) +41: [==========] 192 tests from 11 test cases ran. (105 ms total) 41: [ PASSED ] 192 tests. -41/54 Test #41: SelectionUnitTests .................. Passed 0.17 sec +41/54 Test #41: SelectionUnitTests .................. Passed 0.13 sec test 42 Start 42: MdrunOutputTests @@ -73057,12 +72990,12 @@ 42: [----------] Global test environment set-up. 42: [----------] 1 test from MdrunTest 42: [ RUN ] MdrunTest.WritesHelp -42: [ OK ] MdrunTest.WritesHelp (3 ms) -42: [----------] 1 test from MdrunTest (3 ms total) +42: [ OK ] MdrunTest.WritesHelp (1 ms) +42: [----------] 1 test from MdrunTest (1 ms total) 42: 42: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput 42: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 -42: Setting the LD random seed to 262904831 +42: Setting the LD random seed to -201326913 42: Generated 3 of the 3 non-bonded parameter combinations 42: Generating 1-4 interactions: fudge = 0.5 42: Generated 3 of the 3 1-4 parameter combinations @@ -73100,9 +73033,9 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.005 0.003 195.3 +42: Time: 0.064 0.032 199.7 42: (ns/day) (hour/ns) -42: Performance: 65.055 0.369 +42: Performance: 5.429 4.421 42: Reading frame 0 time 0.000 42: # Atoms 6 42: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -73117,9 +73050,9 @@ 42: Forces 0 42: Box 2 0.001 42: Checking file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0.xtc -42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (29 ms) +42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (140 ms) 42: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 -42: Setting the LD random seed to -209815553 +42: Setting the LD random seed to -346032403 42: Generated 3 of the 3 non-bonded parameter combinations 42: Generating 1-4 interactions: fudge = 0.5 42: Generated 3 of the 3 1-4 parameter combinations @@ -73157,9 +73090,9 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.002 0.001 187.8 +42: Time: 0.056 0.028 199.6 42: (ns/day) (hour/ns) -42: Performance: 179.222 0.134 +42: Performance: 6.173 3.888 42: Reading frame 0 time 0.000 42: # Atoms 6 42: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -73174,9 +73107,9 @@ 42: Forces 0 42: Box 2 0.001 42: Checking file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1.xtc -42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (9 ms) +42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (68 ms) 42: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 -42: Setting the LD random seed to -536941610 +42: Setting the LD random seed to 2080356093 42: Generated 3 of the 3 non-bonded parameter combinations 42: Generating 1-4 interactions: fudge = 0.5 42: Generated 3 of the 3 1-4 parameter combinations @@ -73213,10 +73146,13 @@ 42: 42: Writing final coordinates. 42: +42: NOTE: 11 % of the run time was spent in pair search, +42: you might want to increase nstlist (this has no effect on accuracy) +42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.001 0.001 186.5 +42: Time: 0.030 0.015 199.4 42: (ns/day) (hour/ns) -42: Performance: 235.317 0.102 +42: Performance: 11.580 2.073 42: Reading frame 0 time 0.000 42: # Atoms 3 42: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -73231,8 +73167,8 @@ 42: Forces 0 42: Box 2 0.001 42: Checking file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2.xtc -42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (8 ms) -42: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (46 ms total) +42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (29 ms) +42: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (237 ms total) 42: 42: [----------] 2 tests from Argon12/OutputFiles 42: [ RUN ] Argon12/OutputFiles.FilesArePresent/0 @@ -73275,10 +73211,10 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.002 0.001 191.9 +42: Time: 0.140 0.070 199.9 42: (ns/day) (hour/ns) -42: Performance: 1294.242 0.019 -42: [ OK ] Argon12/OutputFiles.FilesArePresent/0 (8 ms) +42: Performance: 21.034 1.141 +42: [ OK ] Argon12/OutputFiles.FilesArePresent/0 (87 ms) 42: [ RUN ] Argon12/OutputFiles.FilesArePresent/1 42: 42: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Argon12_OutputFiles_FilesArePresent_1_input.mdp]: @@ -73319,15 +73255,15 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.002 0.001 180.4 +42: Time: 0.129 0.065 199.6 42: (ns/day) (hour/ns) -42: Performance: 1144.029 0.021 -42: [ OK ] Argon12/OutputFiles.FilesArePresent/1 (7 ms) -42: [----------] 2 tests from Argon12/OutputFiles (15 ms total) +42: Performance: 22.687 1.058 +42: [ OK ] Argon12/OutputFiles.FilesArePresent/1 (72 ms) +42: [----------] 2 tests from Argon12/OutputFiles (159 ms total) 42: 42: [----------] 3 tests from MdrunCanWrite/Trajectories 42: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 -42: Setting the LD random seed to -1778393353 +42: Setting the LD random seed to -1342185557 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -73360,12 +73296,12 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.008 0.004 197.4 +42: Time: 0.067 0.034 199.7 42: (ns/day) (hour/ns) -42: Performance: 148.729 0.161 -42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (12 ms) +42: Performance: 18.042 1.330 +42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (43 ms) 42: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 -42: Setting the LD random seed to -538379313 +42: Setting the LD random seed to -52443265 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -73398,12 +73334,12 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.005 0.003 196.5 +42: Time: 0.066 0.033 199.8 42: (ns/day) (hour/ns) -42: Performance: 219.079 0.110 -42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (10 ms) +42: Performance: 18.307 1.311 +42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (43 ms) 42: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 -42: Setting the LD random seed to -58724354 +42: Setting the LD random seed to -69206289 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -73436,15 +73372,15 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.004 0.002 195.4 +42: Time: 0.065 0.032 199.7 42: (ns/day) (hour/ns) -42: Performance: 286.182 0.084 -42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (8 ms) -42: [----------] 3 tests from MdrunCanWrite/Trajectories (30 ms total) +42: Performance: 18.695 1.284 +42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (42 ms) +42: [----------] 3 tests from MdrunCanWrite/Trajectories (128 ms total) 42: 42: [----------] 3 tests from MdrunCanWrite/NptTrajectories 42: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 -42: Setting the LD random seed to -100829317 +42: Setting the LD random seed to -10750073 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -73477,12 +73413,12 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.002 0.001 190.7 +42: Time: 0.034 0.017 199.5 42: (ns/day) (hour/ns) -42: Performance: 261.086 0.092 -42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (7 ms) +42: Performance: 15.105 1.589 +42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (27 ms) 42: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 -42: Setting the LD random seed to -134667798 +42: Setting the LD random seed to -407473737 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -73515,12 +73451,12 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.002 0.001 190.1 +42: Time: 0.034 0.017 199.5 42: (ns/day) (hour/ns) -42: Performance: 259.404 0.093 -42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (8 ms) +42: Performance: 15.229 1.576 +42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (27 ms) 42: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 -42: Setting the LD random seed to -84510857 +42: Setting the LD random seed to 1475583927 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -73553,16 +73489,16 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.002 0.001 190.4 +42: Time: 0.034 0.017 199.5 42: (ns/day) (hour/ns) -42: Performance: 208.669 0.115 -42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (12 ms) -42: [----------] 3 tests from MdrunCanWrite/NptTrajectories (27 ms total) +42: Performance: 15.201 1.579 +42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (27 ms) +42: [----------] 3 tests from MdrunCanWrite/NptTrajectories (81 ms total) 42: 42: [----------] Global test environment tear-down -42: [==========] 12 tests from 5 test cases ran. (121 ms total) +42: [==========] 12 tests from 5 test cases ran. (606 ms total) 42: [ PASSED ] 12 tests. -42/54 Test #42: MdrunOutputTests .................... Passed 0.14 sec +42/54 Test #42: MdrunOutputTests .................... Passed 0.62 sec test 43 Start 43: MdrunModulesTests @@ -73572,7 +73508,7 @@ 43: [----------] Global test environment set-up. 43: [----------] 4 tests from DensityFittingTest 43: [ RUN ] DensityFittingTest.EnergyMinimizationEnergyCorrectInnerProduct -43: Setting the LD random seed to 1610612650 +43: Setting the LD random seed to -1637516313 43: Generated 1 of the 1 non-bonded parameter combinations 43: Excluding 1 bonded neighbours molecule type 'Argon' 43: Number of degrees of freedom in T-Coupling group rest is 33.00 @@ -73599,9 +73535,9 @@ 43: Norm of force = 1.07544474716821e+03 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_EnergyMinimizationEnergyCorrectInnerProduct.edr as double precision energy file 43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Last energy frame read 2 time 2.000 This run will generate roughly 0 Mb of data -43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectInnerProduct (27 ms) +43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectInnerProduct (98 ms) 43: [ RUN ] DensityFittingTest.EnergyMinimizationEnergyCorrectForRelativeEntropy -43: Setting the LD random seed to -603982405 +43: Setting the LD random seed to 1073608174 43: Generated 1 of the 1 non-bonded parameter combinations 43: Excluding 1 bonded neighbours molecule type 'Argon' 43: Number of degrees of freedom in T-Coupling group rest is 33.00 @@ -73628,17 +73564,17 @@ 43: Norm of force = 1.25497916247247e+03 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_EnergyMinimizationEnergyCorrectForRelativeEntropy.edr as double precision energy file 43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Last energy frame read 2 time 2.000 This run will generate roughly 0 Mb of data -43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectForRelativeEntropy (8 ms) +43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectForRelativeEntropy (48 ms) 43: [ RUN ] DensityFittingTest.GromppErrorWhenEnergyEvaluationFrequencyMismatch 43: 43: [WARNING] /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/src/gtest-death-test.cc:836:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test detected 2 threads. -43: [ OK ] DensityFittingTest.GromppErrorWhenEnergyEvaluationFrequencyMismatch (7 ms) +43: [ OK ] DensityFittingTest.GromppErrorWhenEnergyEvaluationFrequencyMismatch (16 ms) 43: [ RUN ] DensityFittingTest.CheckpointWorks 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_CheckpointWorks_input.mdp]: 43: Setting nstcalcenergy (100) equal to nstenergy (2) 43: -43: Setting the LD random seed to -335635478 +43: Setting the LD random seed to -188545 43: Generated 1 of the 1 non-bonded parameter combinations 43: Excluding 1 bonded neighbours molecule type 'Argon' 43: Number of degrees of freedom in T-Coupling group rest is 33.00 @@ -73667,10 +73603,13 @@ 43: 43: Writing final coordinates. 43: +43: NOTE: 12 % of the run time was spent in pair search, +43: you might want to increase nstlist (this has no effect on accuracy) +43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.005 0.002 194.7 +43: Time: 0.464 0.232 200.0 43: (ns/day) (hour/ns) -43: Performance: 109.948 0.218 +43: Performance: 1.117 21.487 43: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_CheckpointWorks.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 43: Overriding nsteps with value passed on the command line: 4 steps, 0.004 ps 43: Can not increase nstlist because an NVE ensemble is used @@ -73686,13 +73625,16 @@ 43: 43: Writing final coordinates. 43: +43: NOTE: 24 % of the run time was spent in pair search, +43: you might want to increase nstlist (this has no effect on accuracy) +43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.002 0.001 187.5 +43: Time: 0.264 0.132 199.9 43: (ns/day) (hour/ns) -43: Performance: 509.401 0.047 +43: Performance: 3.271 7.337 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_CheckpointWorks.edr as double precision energy file -43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Last energy frame read 1 time 0.002 [ OK ] DensityFittingTest.CheckpointWorks (15 ms) -43: [----------] 4 tests from DensityFittingTest (57 ms total) +43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Last energy frame read 1 time 0.002 [ OK ] DensityFittingTest.CheckpointWorks (448 ms) +43: [----------] 4 tests from DensityFittingTest (610 ms total) 43: 43: [----------] 4 tests from MimicTest 43: [ RUN ] MimicTest.OneQuantumMol @@ -73701,7 +73643,7 @@ 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to 2101304538 +43: Setting the LD random seed to -1376829647 43: Generated 10 of the 10 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 10 of the 10 1-4 parameter combinations @@ -73733,23 +73675,23 @@ 43: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 43: Reading frame 0 time 0.000 Last frame 0 time 0.000 43: -43: NOTE: 16 % of the run time was spent in pair search, +43: NOTE: 50 % of the run time was spent in pair search, 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.001 0.000 173.7 +43: Time: 0.128 0.064 199.9 43: (ns/day) (hour/ns) -43: Performance: 261.652 0.092 +43: Performance: 1.349 17.796 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_OneQuantumMol.edr as double precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.OneQuantumMol (8 ms) +43: [ OK ] MimicTest.OneQuantumMol (88 ms) 43: [ RUN ] MimicTest.AllQuantumMol 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol_input.mdp]: 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to -311230497 +43: Setting the LD random seed to -412271734 43: Generated 10 of the 10 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 10 of the 10 1-4 parameter combinations @@ -73781,23 +73723,23 @@ 43: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 43: Reading frame 0 time 0.000 Last frame 0 time 0.000 43: -43: NOTE: 16 % of the run time was spent in pair search, +43: NOTE: 73 % of the run time was spent in pair search, 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.001 0.000 186.5 +43: Time: 0.088 0.044 199.9 43: (ns/day) (hour/ns) -43: Performance: 214.812 0.112 +43: Performance: 1.959 12.252 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol.edr as double precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.AllQuantumMol (8 ms) +43: [ OK ] MimicTest.AllQuantumMol (68 ms) 43: [ RUN ] MimicTest.TwoQuantumMol 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol_input.mdp]: 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to -36740577 +43: Setting the LD random seed to -587237401 43: Generated 10 of the 10 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 10 of the 10 1-4 parameter combinations @@ -73829,23 +73771,23 @@ 43: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 43: Reading frame 0 time 0.000 Last frame 0 time 0.000 43: -43: NOTE: 17 % of the run time was spent in pair search, +43: NOTE: 50 % of the run time was spent in pair search, 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.001 0.000 185.2 +43: Time: 0.128 0.064 199.9 43: (ns/day) (hour/ns) -43: Performance: 314.573 0.076 +43: Performance: 1.349 17.796 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol.edr as double precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.TwoQuantumMol (7 ms) +43: [ OK ] MimicTest.TwoQuantumMol (88 ms) 43: [ RUN ] MimicTest.BondCuts 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts_input.mdp]: 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to -1128415445 +43: Setting the LD random seed to -1350582465 43: Generated 2211 of the 2211 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 2211 of the 2211 1-4 parameter combinations @@ -73877,25 +73819,25 @@ 43: Reading frames from gro file 'Alanine dipeptide in water', 23 atoms. 43: Reading frame 0 time 0.000 Last frame 0 time 0.000 43: -43: NOTE: 15 % of the run time was spent in pair search, +43: NOTE: 40 % of the run time was spent in pair search, 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.001 0.001 191.7 +43: Time: 0.160 0.080 199.9 43: (ns/day) (hour/ns) -43: Performance: 147.013 0.163 +43: Performance: 1.079 22.251 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts.edr as double precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300.368 K 43: Calculated rlist for 1x1 atom pair-list as 1.034 nm, buffer size 0.034 nm 43: Set rlist, assuming 4x4 atom pair-list, to 1.025 nm, buffer size 0.025 nm 43: Note that mdrun will redetermine rlist based on the actual pair-list setup 43: This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.BondCuts (23 ms) -43: [----------] 4 tests from MimicTest (46 ms total) +43: [ OK ] MimicTest.BondCuts (128 ms) +43: [----------] 4 tests from MimicTest (372 ms total) 43: 43: [----------] 2 tests from WithIntegrator/ImdTest 43: [ RUN ] WithIntegrator/ImdTest.ImdCanRun/0 -43: Setting the LD random seed to 2012378877 +43: Setting the LD random seed to -329419851 43: Generated 20503 of the 20503 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 1 43: Generated 17396 of the 20503 1-4 parameter combinations @@ -73930,7 +73872,7 @@ 43: IMD: Pulling from IMD remote is enabled (-imdpull). 43: IMD: Setting port for connection requests to 0. 43: IMD: Setting up incoming socket. -43: IMD: Listening for IMD connection on port 55057. +43: IMD: Listening for IMD connection on port 52535. 43: IMD: -imdwait not set, starting simulation. 43: starting mdrun 'Glycine' 43: 2 steps, 0.0 ps. @@ -73943,17 +73885,17 @@ 43: Writing final coordinates. 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.001 0.001 187.8 +43: Time: 0.048 0.024 199.5 43: (ns/day) (hour/ns) -43: Performance: 822.052 0.029 -43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/0 (98 ms) +43: Performance: 21.577 1.112 +43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/0 (227 ms) 43: [ RUN ] WithIntegrator/ImdTest.ImdCanRun/1 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithIntegrator_ImdTest_ImdCanRun_1_input.mdp]: 43: Setting tcoupl from 'V-rescale' to 'no'. Temperature coupling does not 43: apply to steep. 43: -43: Setting the LD random seed to -83974689 +43: Setting the LD random seed to 1056734199 43: Generated 20503 of the 20503 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 1 43: Generated 17396 of the 20503 1-4 parameter combinations @@ -73979,7 +73921,7 @@ 43: IMD: Pulling from IMD remote is enabled (-imdpull). 43: IMD: Setting port for connection requests to 0. 43: IMD: Setting up incoming socket. -43: IMD: Listening for IMD connection on port 56811. +43: IMD: Listening for IMD connection on port 40713. 43: IMD: -imdwait not set, starting simulation. 43: 43: Steepest Descents: @@ -73996,13 +73938,13 @@ 43: Maximum force = 1.77948604657896e+04 on atom 9 43: Norm of force = 7.87328617833980e+03 43: This run will generate roughly 0 Mb of data -43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/1 (67 ms) -43: [----------] 2 tests from WithIntegrator/ImdTest (165 ms total) +43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/1 (456 ms) +43: [----------] 2 tests from WithIntegrator/ImdTest (684 ms total) 43: 43: [----------] Global test environment tear-down -43: [==========] 10 tests from 3 test cases ran. (268 ms total) +43: [==========] 10 tests from 3 test cases ran. (1666 ms total) 43: [ PASSED ] 10 tests. -43/54 Test #43: MdrunModulesTests ................... Passed 0.28 sec +43/54 Test #43: MdrunModulesTests ................... Passed 1.68 sec test 44 Start 44: MdrunIOTests @@ -74017,7 +73959,7 @@ 44: For a correct single-point energy evaluation with nsteps = 0, use 44: continuation = yes to avoid constraining the input coordinates. 44: -44: Setting the LD random seed to -673579014 +44: Setting the LD random seed to 1668086431 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -74040,14 +73982,14 @@ 44: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm 44: Note that mdrun will redetermine rlist based on the actual pair-list setup 44: This run will generate roughly 0 Mb of data -44: [ OK ] GromppTest.EmptyMdpFileWorks (6 ms) +44: [ OK ] GromppTest.EmptyMdpFileWorks (3 ms) 44: [ RUN ] GromppTest.SimulatedAnnealingWorks 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/GromppTest_SimulatedAnnealingWorks_input.mdp]: 44: For a correct single-point energy evaluation with nsteps = 0, use 44: continuation = yes to avoid constraining the input coordinates. 44: -44: Setting the LD random seed to -1114369 +44: Setting the LD random seed to -570434089 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -74083,7 +74025,7 @@ 44: For a correct single-point energy evaluation with nsteps = 0, use 44: continuation = yes to avoid constraining the input coordinates. 44: -44: Setting the LD random seed to -60917796 +44: Setting the LD random seed to -327 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -74118,12 +74060,12 @@ 44: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm 44: Note that mdrun will redetermine rlist based on the actual pair-list setup 44: This run will generate roughly 0 Mb of data -44: [ OK ] GromppTest.SimulatedAnnealingWorksWithMultipleGroups (5 ms) -44: [----------] 3 tests from GromppTest (17 ms total) +44: [ OK ] GromppTest.SimulatedAnnealingWorksWithMultipleGroups (6 ms) +44: [----------] 3 tests from GromppTest (15 ms total) 44: 44: [----------] 6 tests from MdrunTerminationTest 44: [ RUN ] MdrunTerminationTest.CheckpointRestartAppendsByDefault -44: Setting the LD random seed to -1531196167 +44: Setting the LD random seed to -302092353 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -74157,9 +74099,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.003 195.2 +44: Time: 0.064 0.032 199.7 44: (ns/day) (hour/ns) -44: Performance: 100.375 0.239 +44: Performance: 8.138 2.949 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartAppendsByDefault.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartAppendsByDefault.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 4 @@ -74179,13 +74121,16 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 14 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 183.3 +44: Time: 0.448 0.224 200.0 44: (ns/day) (hour/ns) -44: Performance: 308.328 0.078 -44: [ OK ] MdrunTerminationTest.CheckpointRestartAppendsByDefault (31 ms) +44: Performance: 1.157 20.746 +44: [ OK ] MdrunTerminationTest.CheckpointRestartAppendsByDefault (417 ms) 44: [ RUN ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts -44: Setting the LD random seed to -939590185 +44: Setting the LD random seed to -8458515 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -74211,20 +74156,20 @@ 44: starting mdrun 'spc2' 44: 100 steps, 0.1 ps. 44: -44: Step 6: Run time exceeded 0.000 hours, will terminate the run within 2 steps +44: Step 0: Run time exceeded 0.000 hours, will terminate the run within 2 steps 44: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 44: Calculated rlist for 1x1 atom pair-list as 1.026 nm, buffer size 0.026 nm 44: Set rlist, assuming 4x4 atom pair-list, to 1.024 nm, buffer size 0.024 nm 44: Note that mdrun will redetermine rlist based on the actual pair-list setup 44: This run will generate roughly 0 Mb of data 44: -44: NOTE: 14 % of the run time was spent in pair search, +44: NOTE: 40 % of the run time was spent in pair search, 44: you might want to increase nstlist (this has no effect on accuracy) 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 183.9 +44: Time: 0.160 0.080 199.9 44: (ns/day) (hour/ns) -44: Performance: 737.685 0.033 +44: Performance: 2.158 11.120 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 102 @@ -74240,17 +74185,17 @@ 44: Using 2 OpenMP threads 44: 44: starting mdrun 'spc2' -44: 102 steps, 0.1 ps (continuing from step 7, 0.0 ps). +44: 102 steps, 0.1 ps (continuing from step 1, 0.0 ps). 44: 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.002 195.9 +44: Time: 5.833 2.917 200.0 44: (ns/day) (hour/ns) -44: Performance: 3393.410 0.007 -44: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (14 ms) +44: Performance: 3.021 7.943 +44: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (3084 ms) 44: [ RUN ] MdrunTerminationTest.CheckpointRestartWithNoAppendWorksAndCannotLaterAppend -44: Setting the LD random seed to -1199603745 +44: Setting the LD random seed to -415236229 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -74283,10 +74228,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 13 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 186.1 +44: Time: 0.026 0.013 199.5 44: (ns/day) (hour/ns) -44: Performance: 415.424 0.058 +44: Performance: 19.886 1.207 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 4 @@ -74306,10 +74254,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 14 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 188.5 +44: Time: 0.024 0.012 199.6 44: (ns/day) (hour/ns) -44: Performance: 427.512 0.056 +44: Performance: 21.871 1.097 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 6 @@ -74329,10 +74280,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 14 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 192.4 +44: Time: 0.024 0.012 199.3 44: (ns/day) (hour/ns) -44: Performance: 477.664 0.050 +44: Performance: 21.867 1.098 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 8 @@ -74352,10 +74306,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 14 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 192.8 +44: Time: 0.023 0.012 199.6 44: (ns/day) (hour/ns) -44: Performance: 459.106 0.052 +44: Performance: 22.051 1.088 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 10 to 80, rlist from 1.025 to 1.254 44: @@ -74368,16 +74325,16 @@ 44: starting mdrun 'spc2' 44: 8 steps, 0.0 ps (continuing from step 8, 0.0 ps). 44: -44: NOTE: 22 % of the run time was spent in pair search, +44: NOTE: 30 % of the run time was spent in pair search, 44: you might want to increase nstlist (this has no effect on accuracy) 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.000 0.000 164.8 +44: Time: 0.011 0.005 199.2 44: (ns/day) (hour/ns) -44: Performance: 564.467 0.043 -44: [ OK ] MdrunTerminationTest.CheckpointRestartWithNoAppendWorksAndCannotLaterAppend (20 ms) +44: Performance: 15.823 1.517 +44: [ OK ] MdrunTerminationTest.CheckpointRestartWithNoAppendWorksAndCannotLaterAppend (73 ms) 44: [ RUN ] MdrunTerminationTest.CheckpointRestartWorksEvenWithMissingCheckpointFile -44: Setting the LD random seed to 1685880767 +44: Setting the LD random seed to -147892369 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -74410,10 +74367,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 13 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 186.8 +44: Time: 0.026 0.013 199.4 44: (ns/day) (hour/ns) -44: Performance: 491.040 0.049 +44: Performance: 19.582 1.226 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithMissingCheckpointFile.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithMissingCheckpointFile.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 4 @@ -74434,12 +74394,12 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 190.8 +44: Time: 0.040 0.020 199.5 44: (ns/day) (hour/ns) -44: Performance: 515.341 0.047 -44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithMissingCheckpointFile (8 ms) +44: Performance: 21.696 1.106 +44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithMissingCheckpointFile (47 ms) 44: [ RUN ] MdrunTerminationTest.CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile -44: Setting the LD random seed to 2113896159 +44: Setting the LD random seed to -134496562 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -74472,18 +74432,21 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 12 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 187.9 +44: Time: 0.027 0.014 199.3 44: (ns/day) (hour/ns) -44: Performance: 481.899 0.050 +44: Performance: 18.964 1.266 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 4 44: Writing statusfile with starting step 0 and length 4 steps... 44: time 0.000 and length 0.004 ps -44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile (6 ms) +44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile (23 ms) 44: [ RUN ] MdrunTerminationTest.RunWithNoAppendCreatesPartFiles -44: Setting the LD random seed to -67 +44: Setting the LD random seed to -1078232149 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -74516,10 +74479,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 12 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.000 186.6 +44: Time: 0.028 0.014 199.3 44: (ns/day) (hour/ns) -44: Performance: 536.606 0.045 +44: Performance: 18.602 1.290 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_RunWithNoAppendCreatesPartFiles.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_RunWithNoAppendCreatesPartFiles.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 4 @@ -74539,12 +74505,15 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 13 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.000 192.3 +44: Time: 0.025 0.012 199.5 44: (ns/day) (hour/ns) -44: Performance: 548.518 0.044 -44: [ OK ] MdrunTerminationTest.RunWithNoAppendCreatesPartFiles (7 ms) -44: [----------] 6 tests from MdrunTerminationTest (86 ms total) +44: Performance: 20.869 1.150 +44: [ OK ] MdrunTerminationTest.RunWithNoAppendCreatesPartFiles (39 ms) +44: [----------] 6 tests from MdrunTerminationTest (3683 ms total) 44: 44: [----------] 12 tests from NormalIntegrators/MdrunNoAppendContinuationIsExact 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -74612,9 +74581,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 192.7 +44: Time: 0.114 0.057 199.8 44: (ns/day) (hour/ns) -44: Performance: 1733.425 0.014 +44: Performance: 25.732 0.933 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -74628,10 +74597,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 10 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.6 +44: Time: 0.063 0.032 199.7 44: (ns/day) (hour/ns) -44: Performance: 1276.014 0.019 +44: Performance: 24.589 0.976 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -74645,14 +74617,17 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 11 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.8 +44: Time: 0.062 0.031 199.7 44: (ns/day) (hour/ns) -44: Performance: 1224.283 0.020 +44: Performance: 24.905 0.964 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (12 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (140 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -74718,9 +74693,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 191.6 +44: Time: 0.130 0.065 199.8 44: (ns/day) (hour/ns) -44: Performance: 1281.321 0.019 +44: Performance: 22.650 1.060 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -74735,9 +74710,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 194.3 +44: Time: 0.072 0.036 199.9 44: (ns/day) (hour/ns) -44: Performance: 1152.878 0.021 +44: Performance: 21.571 1.113 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -74752,13 +74727,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 195.6 +44: Time: 0.071 0.035 199.9 44: (ns/day) (hour/ns) -44: Performance: 784.956 0.031 +44: Performance: 21.914 1.095 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (11 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (153 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -74815,9 +74790,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 192.2 +44: Time: 0.107 0.054 199.8 44: (ns/day) (hour/ns) -44: Performance: 2068.702 0.012 +44: Performance: 27.351 0.877 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.708 to 0.73 44: @@ -74833,9 +74808,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.8 +44: Time: 0.060 0.030 199.7 44: (ns/day) (hour/ns) -44: Performance: 1318.840 0.018 +44: Performance: 25.937 0.925 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.708 to 0.73 44: @@ -74851,13 +74826,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.4 +44: Time: 0.059 0.030 199.7 44: (ns/day) (hour/ns) -44: Performance: 1376.737 0.017 +44: Performance: 26.183 0.917 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (11 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (133 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -74914,9 +74889,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 192.6 +44: Time: 0.112 0.056 199.8 44: (ns/day) (hour/ns) -44: Performance: 2061.089 0.012 +44: Performance: 26.185 0.917 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -74932,9 +74907,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.3 +44: Time: 0.063 0.031 199.7 44: (ns/day) (hour/ns) -44: Performance: 1287.600 0.019 +44: Performance: 24.787 0.968 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -74950,13 +74925,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.3 +44: Time: 0.062 0.031 199.7 44: (ns/day) (hour/ns) -44: Performance: 1337.773 0.018 +44: Performance: 25.083 0.957 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (137 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/4 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_input.mdp]: @@ -75038,9 +75013,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 192.2 +44: Time: 0.127 0.063 199.8 44: (ns/day) (hour/ns) -44: Performance: 2133.170 0.011 +44: Performance: 23.171 1.036 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -75055,9 +75030,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.0 +44: Time: 0.070 0.035 199.7 44: (ns/day) (hour/ns) -44: Performance: 1444.416 0.017 +44: Performance: 22.243 1.079 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -75072,13 +75047,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.9 +44: Time: 0.071 0.035 199.7 44: (ns/day) (hour/ns) -44: Performance: 1274.518 0.019 +44: Performance: 22.008 1.090 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (156 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/5 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_input.mdp]: @@ -75160,9 +75135,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 195.2 +44: Time: 0.159 0.080 199.9 44: (ns/day) (hour/ns) -44: Performance: 1638.892 0.015 +44: Performance: 18.430 1.302 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -75177,9 +75152,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 193.4 +44: Time: 0.088 0.044 199.9 44: (ns/day) (hour/ns) -44: Performance: 1129.716 0.021 +44: Performance: 17.565 1.366 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -75194,13 +75169,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 194.0 +44: Time: 0.085 0.042 199.9 44: (ns/day) (hour/ns) -44: Performance: 1115.421 0.022 +44: Performance: 18.318 1.310 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (184 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/6 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_input.mdp]: @@ -75273,9 +75248,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.9 +44: Time: 0.125 0.062 199.8 44: (ns/day) (hour/ns) -44: Performance: 2160.096 0.011 +44: Performance: 23.514 1.021 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.731 to 0.816 44: @@ -75291,9 +75266,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 189.5 +44: Time: 0.069 0.034 199.7 44: (ns/day) (hour/ns) -44: Performance: 1437.413 0.017 +44: Performance: 22.546 1.064 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.731 to 0.816 44: @@ -75309,13 +75284,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.0 +44: Time: 0.070 0.035 199.7 44: (ns/day) (hour/ns) -44: Performance: 1373.838 0.017 +44: Performance: 22.304 1.076 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (154 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/7 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_input.mdp]: @@ -75388,9 +75363,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 192.9 +44: Time: 0.159 0.080 199.9 44: (ns/day) (hour/ns) -44: Performance: 1944.018 0.012 +44: Performance: 18.419 1.303 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 25, rlist from 0.754 to 0.9 44: @@ -75406,9 +75381,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.8 +44: Time: 0.088 0.044 199.8 44: (ns/day) (hour/ns) -44: Performance: 1320.442 0.018 +44: Performance: 17.739 1.353 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 25, rlist from 0.754 to 0.9 44: @@ -75424,13 +75399,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.0 +44: Time: 0.087 0.043 199.8 44: (ns/day) (hour/ns) -44: Performance: 1239.639 0.019 +44: Performance: 17.934 1.338 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/7 (9 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/7 (188 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/8 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_input.mdp]: @@ -75546,9 +75521,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.002 195.9 +44: Time: 0.403 0.202 199.9 44: (ns/day) (hour/ns) -44: Performance: 609.477 0.039 +44: Performance: 7.288 3.293 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -75563,9 +75538,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 194.7 +44: Time: 0.216 0.108 199.9 44: (ns/day) (hour/ns) -44: Performance: 453.489 0.053 +44: Performance: 7.210 3.329 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -75580,13 +75555,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 191.7 +44: Time: 0.217 0.109 199.9 44: (ns/day) (hour/ns) -44: Performance: 579.821 0.041 +44: Performance: 7.162 3.351 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/8 (34 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/8 (487 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/9 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_input.mdp]: @@ -75702,9 +75677,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.003 196.3 +44: Time: 0.477 0.239 200.0 44: (ns/day) (hour/ns) -44: Performance: 574.950 0.042 +44: Performance: 6.154 3.900 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -75719,9 +75694,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 191.9 +44: Time: 0.255 0.128 199.9 44: (ns/day) (hour/ns) -44: Performance: 560.394 0.043 +44: Performance: 6.085 3.944 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -75736,13 +75711,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 193.8 +44: Time: 0.249 0.125 199.9 44: (ns/day) (hour/ns) -44: Performance: 573.600 0.042 +44: Performance: 6.231 3.852 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (31 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (548 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/10 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_input.mdp]: @@ -75849,9 +75824,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.002 195.6 +44: Time: 0.399 0.200 200.0 44: (ns/day) (hour/ns) -44: Performance: 633.806 0.038 +44: Performance: 7.357 3.262 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.745 to 0.873 44: @@ -75867,9 +75842,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 192.5 +44: Time: 0.216 0.108 199.9 44: (ns/day) (hour/ns) -44: Performance: 584.706 0.041 +44: Performance: 7.211 3.328 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.745 to 0.873 44: @@ -75885,13 +75860,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 194.6 +44: Time: 0.215 0.108 199.9 44: (ns/day) (hour/ns) -44: Performance: 462.164 0.052 +44: Performance: 7.216 3.326 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/10 (44 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/10 (484 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/11 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_input.mdp]: @@ -75998,9 +75973,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.006 0.003 196.4 +44: Time: 0.643 0.322 200.0 44: (ns/day) (hour/ns) -44: Performance: 520.408 0.046 +44: Performance: 4.568 5.254 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 40, rlist from 0.727 to 0.874 44: @@ -76016,9 +75991,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.004 0.002 195.1 +44: Time: 0.343 0.171 199.9 44: (ns/day) (hour/ns) -44: Performance: 386.067 0.062 +44: Performance: 4.534 5.293 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 40, rlist from 0.727 to 0.874 44: @@ -76034,14 +76009,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.004 0.002 195.4 +44: Time: 0.343 0.172 199.9 44: (ns/day) (hour/ns) -44: Performance: 373.853 0.064 +44: Performance: 4.531 5.297 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/11 (42 ms) -44: [----------] 12 tests from NormalIntegrators/MdrunNoAppendContinuationIsExact (234 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/11 (750 ms) +44: [----------] 12 tests from NormalIntegrators/MdrunNoAppendContinuationIsExact (3514 ms total) 44: 44: [----------] 4 tests from NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -76131,9 +76106,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.002 195.0 +44: Time: 0.173 0.086 199.8 44: (ns/day) (hour/ns) -44: Performance: 626.841 0.038 +44: Performance: 16.995 1.412 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -76148,9 +76123,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 190.4 +44: Time: 0.094 0.047 199.7 44: (ns/day) (hour/ns) -44: Performance: 569.693 0.042 +44: Performance: 16.520 1.453 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -76165,13 +76140,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 190.6 +44: Time: 0.093 0.047 199.7 44: (ns/day) (hour/ns) -44: Performance: 556.853 0.043 +44: Performance: 16.701 1.437 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (31 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (227 ms) 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -76259,9 +76234,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.003 196.8 +44: Time: 0.217 0.109 199.9 44: (ns/day) (hour/ns) -44: Performance: 559.749 0.043 +44: Performance: 13.520 1.775 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -76276,9 +76251,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 193.7 +44: Time: 0.120 0.060 199.9 44: (ns/day) (hour/ns) -44: Performance: 493.642 0.049 +44: Performance: 12.945 1.854 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -76292,17 +76267,14 @@ 44: 44: Writing final coordinates. 44: -44: NOTE: 11 % of the run time was spent in pair search, -44: you might want to increase nstlist (this has no effect on accuracy) -44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 194.4 +44: Time: 0.115 0.058 199.9 44: (ns/day) (hour/ns) -44: Performance: 479.702 0.050 +44: Performance: 13.513 1.776 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (33 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (262 ms) 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -76381,9 +76353,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.002 195.0 +44: Time: 0.168 0.084 199.8 44: (ns/day) (hour/ns) -44: Performance: 609.296 0.039 +44: Performance: 17.418 1.378 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.728 to 0.807 44: @@ -76399,9 +76371,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 190.8 +44: Time: 0.092 0.046 199.8 44: (ns/day) (hour/ns) -44: Performance: 572.292 0.042 +44: Performance: 16.792 1.429 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.728 to 0.807 44: @@ -76417,13 +76389,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 192.0 +44: Time: 0.092 0.046 199.7 44: (ns/day) (hour/ns) -44: Performance: 541.416 0.044 +44: Performance: 16.929 1.418 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (47 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (231 ms) 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -76502,9 +76474,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.003 195.6 +44: Time: 0.216 0.108 199.9 44: (ns/day) (hour/ns) -44: Performance: 565.919 0.042 +44: Performance: 13.592 1.766 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 44: @@ -76520,9 +76492,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 192.9 +44: Time: 0.117 0.059 199.8 44: (ns/day) (hour/ns) -44: Performance: 533.621 0.045 +44: Performance: 13.258 1.810 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 44: @@ -76538,14 +76510,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 191.3 +44: Time: 0.117 0.059 199.8 44: (ns/day) (hour/ns) -44: Performance: 516.958 0.046 +44: Performance: 13.256 1.810 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (40 ms) -44: [----------] 4 tests from NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact (151 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (276 ms) +44: [----------] 4 tests from NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact (996 ms total) 44: 44: [----------] 6 tests from NVT/MdrunNoAppendContinuationIsExact 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -76614,9 +76586,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 192.8 +44: Time: 0.112 0.056 199.8 44: (ns/day) (hour/ns) -44: Performance: 2057.647 0.012 +44: Performance: 26.320 0.912 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -76632,9 +76604,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.3 +44: Time: 0.062 0.031 199.7 44: (ns/day) (hour/ns) -44: Performance: 1422.368 0.017 +44: Performance: 24.930 0.963 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -76650,13 +76622,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.0 +44: Time: 0.061 0.031 199.7 44: (ns/day) (hour/ns) -44: Performance: 1267.090 0.019 +44: Performance: 25.248 0.951 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (138 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -76713,9 +76685,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 187.5 +44: Time: 0.111 0.055 199.8 44: (ns/day) (hour/ns) -44: Performance: 2111.238 0.011 +44: Performance: 26.494 0.906 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -76731,9 +76703,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.2 +44: Time: 0.062 0.031 199.7 44: (ns/day) (hour/ns) -44: Performance: 1418.656 0.017 +44: Performance: 25.216 0.952 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -76749,13 +76721,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.6 +44: Time: 0.061 0.031 199.8 44: (ns/day) (hour/ns) -44: Performance: 1400.382 0.017 +44: Performance: 25.317 0.948 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (136 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -76820,9 +76792,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.8 +44: Time: 0.110 0.055 199.8 44: (ns/day) (hour/ns) -44: Performance: 2086.922 0.012 +44: Performance: 26.695 0.899 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -76838,9 +76810,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.1 +44: Time: 0.061 0.031 199.8 44: (ns/day) (hour/ns) -44: Performance: 1295.270 0.019 +44: Performance: 25.302 0.949 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -76856,13 +76828,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.5 +44: Time: 0.060 0.030 199.7 44: (ns/day) (hour/ns) -44: Performance: 1290.657 0.019 +44: Performance: 25.749 0.932 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (131 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -76929,9 +76901,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 192.2 +44: Time: 0.135 0.068 199.9 44: (ns/day) (hour/ns) -44: Performance: 1992.430 0.012 +44: Performance: 21.677 1.107 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -76947,9 +76919,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.7 +44: Time: 0.074 0.037 199.8 44: (ns/day) (hour/ns) -44: Performance: 1312.471 0.018 +44: Performance: 20.907 1.148 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -76965,13 +76937,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 192.0 +44: Time: 0.072 0.036 199.8 44: (ns/day) (hour/ns) -44: Performance: 1218.338 0.020 +44: Performance: 21.623 1.110 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (9 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (156 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_input.mdp]: @@ -77028,9 +77000,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 195.3 +44: Time: 0.125 0.063 199.9 44: (ns/day) (hour/ns) -44: Performance: 1819.431 0.013 +44: Performance: 23.466 1.023 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -77046,9 +77018,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 193.6 +44: Time: 0.071 0.035 199.8 44: (ns/day) (hour/ns) -44: Performance: 1204.836 0.020 +44: Performance: 22.024 1.090 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -77064,13 +77036,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 194.5 +44: Time: 0.070 0.035 199.8 44: (ns/day) (hour/ns) -44: Performance: 1099.626 0.022 +44: Performance: 22.295 1.076 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (146 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_input.mdp]: @@ -77127,9 +77099,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 190.9 +44: Time: 0.137 0.068 199.9 44: (ns/day) (hour/ns) -44: Performance: 1689.222 0.014 +44: Performance: 21.503 1.116 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -77145,9 +77117,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.8 +44: Time: 0.075 0.038 199.8 44: (ns/day) (hour/ns) -44: Performance: 1280.020 0.019 +44: Performance: 20.611 1.164 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -77163,14 +77135,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 188.1 +44: Time: 0.072 0.036 199.8 44: (ns/day) (hour/ns) -44: Performance: 1200.843 0.020 +44: Performance: 21.523 1.115 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (10 ms) -44: [----------] 6 tests from NVT/MdrunNoAppendContinuationIsExact (59 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (157 ms) +44: [----------] 6 tests from NVT/MdrunNoAppendContinuationIsExact (864 ms total) 44: 44: [----------] 4 tests from NPH/MdrunNoAppendContinuationIsExact 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -77238,9 +77210,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 189.4 +44: Time: 0.117 0.058 199.8 44: (ns/day) (hour/ns) -44: Performance: 2000.842 0.012 +44: Performance: 25.156 0.954 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -77254,10 +77226,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 10 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.5 +44: Time: 0.065 0.033 199.7 44: (ns/day) (hour/ns) -44: Performance: 1365.783 0.018 +44: Performance: 23.884 1.005 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -77271,14 +77246,17 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 10 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.6 +44: Time: 0.064 0.032 199.7 44: (ns/day) (hour/ns) -44: Performance: 1305.118 0.018 +44: Performance: 24.196 0.992 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (139 ms) 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -77344,9 +77322,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 192.1 +44: Time: 0.113 0.056 199.8 44: (ns/day) (hour/ns) -44: Performance: 1998.895 0.012 +44: Performance: 26.055 0.921 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -77360,10 +77338,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 11 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 189.9 +44: Time: 0.063 0.031 199.7 44: (ns/day) (hour/ns) -44: Performance: 1374.996 0.017 +44: Performance: 24.813 0.967 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -77377,14 +77358,17 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 11 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.8 +44: Time: 0.062 0.031 199.7 44: (ns/day) (hour/ns) -44: Performance: 1260.723 0.019 +44: Performance: 25.205 0.952 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (9 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (135 ms) 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -77450,9 +77434,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 192.6 +44: Time: 0.040 0.020 199.4 44: (ns/day) (hour/ns) -44: Performance: 1857.279 0.013 +44: Performance: 73.278 0.328 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -77467,9 +77451,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.1 +44: Time: 1.160 0.580 200.0 44: (ns/day) (hour/ns) -44: Performance: 1289.127 0.019 +44: Performance: 1.340 17.909 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -77484,13 +77468,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.1 +44: Time: 0.072 0.036 199.7 44: (ns/day) (hour/ns) -44: Performance: 1248.657 0.019 +44: Performance: 21.588 1.112 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (726 ms) 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -77555,10 +77539,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 24 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 194.9 +44: Time: 0.296 0.148 200.0 44: (ns/day) (hour/ns) -44: Performance: 1715.565 0.014 +44: Performance: 9.918 2.420 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -77573,9 +77560,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 193.5 +44: Time: 1.304 0.652 200.0 44: (ns/day) (hour/ns) -44: Performance: 1148.008 0.021 +44: Performance: 1.192 20.126 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Can not increase nstlist because an NVE ensemble is used 44: Using 1 MPI thread @@ -77590,14 +77577,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 193.9 +44: Time: 1.344 0.672 200.0 44: (ns/day) (hour/ns) -44: Performance: 1090.070 0.022 +44: Performance: 1.157 20.744 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (10 ms) -44: [----------] 4 tests from NPH/MdrunNoAppendContinuationIsExact (39 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (1576 ms) +44: [----------] 4 tests from NPH/MdrunNoAppendContinuationIsExact (2576 ms total) 44: 44: [----------] 12 tests from NPT/MdrunNoAppendContinuationIsExact 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -77666,9 +77653,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.9 +44: Time: 2.208 1.104 200.0 44: (ns/day) (hour/ns) -44: Performance: 2012.608 0.012 +44: Performance: 1.330 18.040 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -77684,9 +77671,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.1 +44: Time: 1.232 0.616 200.0 44: (ns/day) (hour/ns) -44: Performance: 1331.221 0.018 +44: Performance: 1.262 19.015 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -77702,13 +77689,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.3 +44: Time: 1.216 0.608 200.0 44: (ns/day) (hour/ns) -44: Performance: 1311.943 0.018 +44: Performance: 1.279 18.769 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (2464 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -77775,9 +77762,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.5 +44: Time: 0.088 0.044 199.7 44: (ns/day) (hour/ns) -44: Performance: 1991.142 0.012 +44: Performance: 33.324 0.720 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -77792,10 +77779,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 12 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 188.7 +44: Time: 0.536 0.268 200.0 44: (ns/day) (hour/ns) -44: Performance: 1374.417 0.017 +44: Performance: 2.901 8.274 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -77811,13 +77801,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.4 +44: Time: 0.104 0.052 199.8 44: (ns/day) (hour/ns) -44: Performance: 1130.108 0.021 +44: Performance: 14.935 1.607 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (508 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -77874,9 +77864,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 192.2 +44: Time: 1.248 0.624 200.0 44: (ns/day) (hour/ns) -44: Performance: 1990.499 0.012 +44: Performance: 2.354 10.196 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -77891,10 +77881,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 36 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 189.9 +44: Time: 0.176 0.088 199.9 44: (ns/day) (hour/ns) -44: Performance: 1316.710 0.018 +44: Performance: 8.829 2.718 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -77910,13 +77903,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.3 +44: Time: 0.012 0.006 198.1 44: (ns/day) (hour/ns) -44: Performance: 1279.016 0.019 +44: Performance: 131.916 0.182 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (838 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -77973,9 +77966,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 192.0 +44: Time: 0.180 0.090 199.9 44: (ns/day) (hour/ns) -44: Performance: 2008.671 0.012 +44: Performance: 16.308 1.472 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -77991,9 +77984,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.2 +44: Time: 0.105 0.053 199.8 44: (ns/day) (hour/ns) -44: Performance: 1303.033 0.018 +44: Performance: 14.770 1.625 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -78009,13 +78002,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.2 +44: Time: 0.099 0.050 199.8 44: (ns/day) (hour/ns) -44: Performance: 1304.596 0.018 +44: Performance: 15.642 1.534 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (9 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (222 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_input.mdp]: @@ -78094,9 +78087,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.9 +44: Time: 0.196 0.098 199.9 44: (ns/day) (hour/ns) -44: Performance: 1955.123 0.012 +44: Performance: 14.946 1.606 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -78112,9 +78105,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.2 +44: Time: 0.032 0.016 199.3 44: (ns/day) (hour/ns) -44: Performance: 1371.527 0.017 +44: Performance: 47.933 0.501 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -78130,13 +78123,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.1 +44: Time: 0.103 0.051 199.8 44: (ns/day) (hour/ns) -44: Performance: 1291.168 0.019 +44: Performance: 15.121 1.587 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (256 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_input.mdp]: @@ -78201,9 +78194,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.8 +44: Time: 0.188 0.094 199.9 44: (ns/day) (hour/ns) -44: Performance: 2058.334 0.012 +44: Performance: 15.592 1.539 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -78219,9 +78212,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.0 +44: Time: 0.108 0.054 199.8 44: (ns/day) (hour/ns) -44: Performance: 1327.428 0.018 +44: Performance: 14.360 1.671 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -78237,13 +78230,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.2 +44: Time: 0.099 0.050 199.8 44: (ns/day) (hour/ns) -44: Performance: 1326.888 0.018 +44: Performance: 15.653 1.533 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (224 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/6 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_input.mdp]: @@ -78310,9 +78303,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 192.6 +44: Time: 0.237 0.118 199.9 44: (ns/day) (hour/ns) -44: Performance: 1842.834 0.013 +44: Performance: 12.410 1.934 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -78328,9 +78321,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.7 +44: Time: 0.120 0.060 199.8 44: (ns/day) (hour/ns) -44: Performance: 1299.917 0.018 +44: Performance: 12.923 1.857 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -78346,13 +78339,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.6 +44: Time: 0.080 0.040 199.7 44: (ns/day) (hour/ns) -44: Performance: 1261.211 0.019 +44: Performance: 19.378 1.238 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (277 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/7 44: [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/7 (0 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/8 @@ -78411,9 +78404,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 191.9 +44: Time: 0.143 0.072 199.9 44: (ns/day) (hour/ns) -44: Performance: 1906.124 0.013 +44: Performance: 20.521 1.170 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_8_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -78429,9 +78422,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 189.7 +44: Time: 0.079 0.039 199.8 44: (ns/day) (hour/ns) -44: Performance: 1295.270 0.019 +44: Performance: 19.703 1.218 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_8_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -78447,13 +78440,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 190.8 +44: Time: 0.075 0.038 199.7 44: (ns/day) (hour/ns) -44: Performance: 1242.000 0.019 +44: Performance: 20.615 1.164 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_8_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_8_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_8_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/8 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/8 (169 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/9 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_input.mdp]: @@ -78510,9 +78503,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 192.8 +44: Time: 0.131 0.066 199.9 44: (ns/day) (hour/ns) -44: Performance: 1624.629 0.015 +44: Performance: 22.384 1.072 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -78528,9 +78521,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 192.9 +44: Time: 0.071 0.036 199.8 44: (ns/day) (hour/ns) -44: Performance: 1153.693 0.021 +44: Performance: 21.805 1.101 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -78546,18 +78539,18 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 193.5 +44: Time: 0.070 0.035 199.8 44: (ns/day) (hour/ns) -44: Performance: 1071.097 0.022 +44: Performance: 22.078 1.087 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (10 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (153 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/10 -44: [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/10 (1 ms) +44: [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/10 (0 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/11 44: [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/11 (0 ms) -44: [----------] 12 tests from NPT/MdrunNoAppendContinuationIsExact (90 ms total) +44: [----------] 12 tests from NPT/MdrunNoAppendContinuationIsExact (5111 ms total) 44: 44: [----------] 1 test from MTTK/MdrunNoAppendContinuationIsExact 44: [ RUN ] MTTK/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -78616,9 +78609,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 193.6 +44: Time: 0.139 0.070 199.8 44: (ns/day) (hour/ns) -44: Performance: 1575.197 0.015 +44: Performance: 21.116 1.137 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MTTK_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -78634,9 +78627,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 190.6 +44: Time: 0.078 0.039 199.7 44: (ns/day) (hour/ns) -44: Performance: 507.704 0.047 +44: Performance: 19.922 1.205 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MTTK_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 44: @@ -78652,18 +78645,18 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 190.9 +44: Time: 0.073 0.037 199.7 44: (ns/day) (hour/ns) -44: Performance: 525.454 0.046 +44: Performance: 21.244 1.130 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MTTK_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MTTK_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MTTK_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] MTTK/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (14 ms) -44: [----------] 1 test from MTTK/MdrunNoAppendContinuationIsExact (14 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] MTTK/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (165 ms) +44: [----------] 1 test from MTTK/MdrunNoAppendContinuationIsExact (165 ms total) 44: 44: [----------] 3 tests from Checking/InitialConstraintsTest 44: [ RUN ] Checking/InitialConstraintsTest.Works/0 -44: Setting the LD random seed to 1607794683 +44: Setting the LD random seed to 2144599903 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -78701,14 +78694,17 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 13 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 184.7 +44: Time: 0.025 0.013 199.1 44: (ns/day) (hour/ns) -44: Performance: 190.680 0.126 +44: Performance: 13.528 1.774 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_spc-and-methanol.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (9 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (25 ms) 44: [ RUN ] Checking/InitialConstraintsTest.Works/1 -44: Setting the LD random seed to 1878750122 +44: Setting the LD random seed to -1048954 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -78747,18 +78743,18 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 191.0 +44: Time: 0.036 0.018 199.5 44: (ns/day) (hour/ns) -44: Performance: 165.398 0.145 +44: Performance: 9.443 2.542 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_spc-and-methanol.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (8 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (27 ms) 44: [ RUN ] Checking/InitialConstraintsTest.Works/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]: 44: Integrator method md-vv-avek is implemented primarily for validation 44: purposes; for molecular dynamics, you should probably be using md or md-vv 44: -44: Setting the LD random seed to -1343668625 +44: Setting the LD random seed to -68258489 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -78797,17 +78793,17 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 184.4 +44: Time: 0.061 0.030 199.7 44: (ns/day) (hour/ns) -44: Performance: 212.047 0.113 +44: Performance: 5.679 4.226 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_spc-and-methanol.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (9 ms) -44: [----------] 3 tests from Checking/InitialConstraintsTest (26 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (50 ms) +44: [----------] 3 tests from Checking/InitialConstraintsTest (102 ms total) 44: 44: [----------] Global test environment tear-down -44: [==========] 51 tests from 9 test cases ran. (716 ms total) +44: [==========] 51 tests from 9 test cases ran. (17026 ms total) 44: [ PASSED ] 51 tests. -44/54 Test #44: MdrunIOTests ........................ Passed 0.75 sec +44/54 Test #44: MdrunIOTests ........................ Passed 17.07 sec test 45 Start 45: MdrunTests @@ -78822,7 +78818,7 @@ 45: The Berendsen thermostat does not generate the correct kinetic energy 45: distribution. You might want to consider using the V-rescale thermostat. 45: -45: Setting the LD random seed to -67371296 +45: Setting the LD random seed to -609271941 45: Generated 2145 of the 2145 non-bonded parameter combinations 45: Generating 1-4 interactions: fudge = 0.5 45: Generated 2145 of the 2145 1-4 parameter combinations @@ -78868,11 +78864,11 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.026 0.013 198.9 +45: Time: 0.127 0.064 199.8 45: (ns/day) (hour/ns) -45: Performance: 2640.708 0.009 -45: [ OK ] DispersionCorrectionTest.DispersionCorrectionCanRun (70 ms) -45: [----------] 1 test from DispersionCorrectionTest (70 ms total) +45: Performance: 546.666 0.044 +45: [ OK ] DispersionCorrectionTest.DispersionCorrectionCanRun (180 ms) +45: [----------] 1 test from DispersionCorrectionTest (180 ms total) 45: 45: [----------] 1 test from OriresTest 45: [ RUN ] OriresTest.OriresCanRun @@ -78881,7 +78877,7 @@ 45: The Berendsen thermostat does not generate the correct kinetic energy 45: distribution. You might want to consider using the V-rescale thermostat. 45: -45: Setting the LD random seed to -42467909 +45: Setting the LD random seed to -104858113 45: Generated 2145 of the 2145 non-bonded parameter combinations 45: Generating 1-4 interactions: fudge = 0.5 45: Generated 2145 of the 2145 1-4 parameter combinations @@ -78920,15 +78916,15 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.010 0.005 198.1 +45: Time: 0.174 0.087 199.8 45: (ns/day) (hour/ns) -45: Performance: 367.093 0.065 -45: [ OK ] OriresTest.OriresCanRun (146 ms) -45: [----------] 1 test from OriresTest (146 ms total) +45: Performance: 21.857 1.098 +45: [ OK ] OriresTest.OriresCanRun (360 ms) +45: [----------] 1 test from OriresTest (360 ms total) 45: 45: [----------] 3 tests from PmeTest 45: [ RUN ] PmeTest.ReproducesEnergies -45: Setting the LD random seed to 1054863301 +45: Setting the LD random seed to -342139481 45: Generated 8 of the 10 non-bonded parameter combinations 45: Excluding 2 bonded neighbours molecule type 'Methanol' 45: Excluding 2 bonded neighbours molecule type 'SOL' @@ -78969,9 +78965,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.044 0.022 199.7 +45: Time: 0.407 0.204 200.0 45: (ns/day) (hour/ns) -45: Performance: 82.373 0.291 +45: Performance: 8.913 2.693 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 45: Can not increase nstlist because an NVE ensemble is used @@ -78987,9 +78983,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.044 0.022 199.7 +45: Time: 0.413 0.207 200.0 45: (ns/day) (hour/ns) -45: Performance: 82.272 0.292 +45: Performance: 8.774 2.735 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 45: Can not increase nstlist because an NVE ensemble is used @@ -79005,18 +79001,18 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.040 0.020 199.7 +45: Time: 0.336 0.168 199.9 45: (ns/day) (hour/ns) -45: Performance: 90.904 0.264 +45: Performance: 10.799 2.222 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as double precision energy file -45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (82 ms) +45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (632 ms) 45: [ RUN ] PmeTest.ScalesTheBox 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -285217313 +45: Setting the LD random seed to 1003355827 45: Generated 8 of the 10 non-bonded parameter combinations 45: Excluding 2 bonded neighbours molecule type 'Methanol' 45: Excluding 2 bonded neighbours molecule type 'SOL' @@ -79047,10 +79043,13 @@ 45: starting mdrun 'spc-and-methanol' 45: 0 steps, 0.0 ps. 45: +45: NOTE: 14 % of the run time was spent in pair search, +45: you might want to increase nstlist (this has no effect on accuracy) +45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 192.0 +45: Time: 0.025 0.012 199.3 45: (ns/day) (hour/ns) -45: Performance: 84.315 0.285 +45: Performance: 7.010 3.424 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_spc-and-methanol_PmeOnCpu.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K 45: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -79059,14 +79058,14 @@ 45: Calculating fourier grid dimensions for X Y Z 45: Using a fourier grid of 28x28x28, spacing 0.107 0.107 0.107 45: This run will generate roughly 0 Mb of data -45: [ OK ] PmeTest.ScalesTheBox (7 ms) +45: [ OK ] PmeTest.ScalesTheBox (27 ms) 45: [ RUN ] PmeTest.ScalesTheBoxWithWalls 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -173820219 +45: Setting the LD random seed to -1163531659 45: Generated 8 of the 10 non-bonded parameter combinations 45: Excluding 2 bonded neighbours molecule type 'Methanol' 45: Excluding 2 bonded neighbours molecule type 'SOL' @@ -79098,10 +79097,13 @@ 45: starting mdrun 'spc-and-methanol' 45: 0 steps, 0.0 ps. 45: +45: NOTE: 10 % of the run time was spent in pair search, +45: you might want to increase nstlist (this has no effect on accuracy) +45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.009 0.005 197.7 +45: Time: 0.034 0.017 199.4 45: (ns/day) (hour/ns) -45: Performance: 18.267 1.314 +45: Performance: 5.091 4.714 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_spc-and-methanol_PmeOnCpu.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 966.268 K 45: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -79110,8 +79112,8 @@ 45: Calculating fourier grid dimensions for X Y Z 45: Using a fourier grid of 28x28x128, spacing 0.107 0.107 0.118 45: This run will generate roughly 0 Mb of data -45: [ OK ] PmeTest.ScalesTheBoxWithWalls (18 ms) -45: [----------] 3 tests from PmeTest (107 ms total) +45: [ OK ] PmeTest.ScalesTheBoxWithWalls (40 ms) +45: [----------] 3 tests from PmeTest (699 ms total) 45: 45: [----------] 1 test from CompelTest 45: [ RUN ] CompelTest.SwapCanRun @@ -79120,7 +79122,7 @@ 45: The Berendsen thermostat does not generate the correct kinetic energy 45: distribution. You might want to consider using the V-rescale thermostat. 45: -45: Setting the LD random seed to 2000518975 +45: Setting the LD random seed to -1174437890 45: Generated 330891 of the 330891 non-bonded parameter combinations 45: Generating 1-4 interactions: fudge = 0.5 45: Generated 330891 of the 330891 1-4 parameter combinations @@ -79179,13 +79181,13 @@ 45: 45: Writing final coordinates. 45: -45: NOTE: 36 % of the run time was spent in pair search, +45: NOTE: 31 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.512 0.256 199.9 +45: Time: 0.522 0.261 199.9 45: (ns/day) (hour/ns) -45: Performance: 5.063 4.740 +45: Performance: 4.968 4.831 45: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/CompelTest_SwapCanRun.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 45: Overriding nsteps with value passed on the command line: 2 steps, 0.01 ps 45: @@ -79206,15 +79208,15 @@ 45: 45: Writing final coordinates. 45: -45: NOTE: 28 % of the run time was spent in pair search, +45: NOTE: 20 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.288 0.144 199.9 +45: Time: 0.387 0.193 199.9 45: (ns/day) (hour/ns) -45: Performance: 8.990 2.670 -45: [ OK ] CompelTest.SwapCanRun (777 ms) -45: [----------] 1 test from CompelTest (777 ms total) +45: Performance: 6.702 3.581 +45: [ OK ] CompelTest.SwapCanRun (878 ms) +45: [----------] 1 test from CompelTest (878 ms total) 45: 45: [----------] 6 tests from BondedInteractionsTest 45: [ RUN ] BondedInteractionsTest.NormalBondWorks @@ -79223,7 +79225,7 @@ 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to 2011766265 +45: Setting the LD random seed to -1117266 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -79256,22 +79258,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 18 % of the run time was spent in pair search, +45: NOTE: 36 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 185.7 +45: Time: 0.009 0.005 199.0 45: (ns/day) (hour/ns) -45: Performance: 480.621 0.050 +45: Performance: 18.610 1.290 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.NormalBondWorks (3 ms) +45: [ OK ] BondedInteractionsTest.NormalBondWorks (13 ms) 45: [ RUN ] BondedInteractionsTest.TabulatedBondWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -546407657 +45: Setting the LD random seed to -161499779 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -79304,22 +79306,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 15 % of the run time was spent in pair search, +45: NOTE: 37 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 184.8 +45: Time: 0.009 0.005 199.1 45: (ns/day) (hour/ns) -45: Performance: 451.292 0.053 +45: Performance: 19.067 1.259 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.TabulatedBondWorks (4 ms) +45: [ OK ] BondedInteractionsTest.TabulatedBondWorks (11 ms) 45: [ RUN ] BondedInteractionsTest.NormalAngleWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -187750728 +45: Setting the LD random seed to 1847566262 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -79352,22 +79354,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 17 % of the run time was spent in pair search, +45: NOTE: 24 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 185.0 +45: Time: 0.014 0.007 199.1 45: (ns/day) (hour/ns) -45: Performance: 512.571 0.047 +45: Performance: 12.497 1.920 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.NormalAngleWorks (3 ms) +45: [ OK ] BondedInteractionsTest.NormalAngleWorks (15 ms) 45: [ RUN ] BondedInteractionsTest.TabulatedAngleWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -880824321 +45: Setting the LD random seed to -1208229897 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -79400,22 +79402,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 19 % of the run time was spent in pair search, +45: NOTE: 38 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 184.6 +45: Time: 0.009 0.004 199.1 45: (ns/day) (hour/ns) -45: Performance: 527.493 0.045 +45: Performance: 19.449 1.234 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (3 ms) +45: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (13 ms) 45: [ RUN ] BondedInteractionsTest.NormalDihedralWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -549519875 +45: Setting the LD random seed to 1888482299 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -79448,22 +79450,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 18 % of the run time was spent in pair search, +45: NOTE: 16 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 185.9 +45: Time: 0.021 0.011 199.4 45: (ns/day) (hour/ns) -45: Performance: 512.571 0.047 +45: Performance: 8.136 2.950 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.NormalDihedralWorks (4 ms) +45: [ OK ] BondedInteractionsTest.NormalDihedralWorks (22 ms) 45: [ RUN ] BondedInteractionsTest.TabulatedDihedralWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -268480569 +45: Setting the LD random seed to -1074024846 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -79496,16 +79498,16 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 18 % of the run time was spent in pair search, +45: NOTE: 71 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 184.9 +45: Time: 0.019 0.010 199.4 45: (ns/day) (hour/ns) -45: Performance: 506.836 0.047 +45: Performance: 8.937 2.685 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (3 ms) -45: [----------] 6 tests from BondedInteractionsTest (20 ms total) +45: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (16 ms) +45: [----------] 6 tests from BondedInteractionsTest (90 ms total) 45: 45: [----------] 4 tests from SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest 45: [ RUN ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/0 @@ -79548,9 +79550,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 192.3 +45: Time: 0.219 0.110 199.9 45: (ns/day) (hour/ns) -45: Performance: 1703.233 0.014 +45: Performance: 13.393 1.792 45: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_0_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 45: Can not increase nstlist because an NVE ensemble is used 45: Using 1 MPI thread @@ -79564,16 +79566,19 @@ 45: 45: Writing final coordinates. 45: +45: NOTE: 10 % of the run time was spent in pair search, +45: you might want to increase nstlist (this has no effect on accuracy) +45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 192.7 +45: Time: 0.229 0.114 199.9 45: (ns/day) (hour/ns) -45: Performance: 1793.477 0.013 +45: Performance: 12.829 1.871 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_0_sim1.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_0_sim2.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 trr version: GMX_trn_file (double precision) 45: 45: -45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/0 (7 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/0 (240 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/1 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_1_input.mdp]: @@ -79610,9 +79615,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 194.9 +45: Time: 0.126 0.063 199.9 45: (ns/day) (hour/ns) -45: Performance: 1708.903 0.014 +45: Performance: 23.235 1.033 45: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_1_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 45: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 45: @@ -79628,14 +79633,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.001 0.001 192.9 +45: Time: 0.170 0.085 199.9 45: (ns/day) (hour/ns) -45: Performance: 1902.005 0.013 +45: Performance: 17.246 1.392 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_1_sim1.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_1_sim2.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/1 (7 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/1 (161 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/2 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_2_input.mdp]: @@ -79684,9 +79689,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 195.5 +45: Time: 0.196 0.098 199.9 45: (ns/day) (hour/ns) -45: Performance: 1425.733 0.017 +45: Performance: 15.021 1.598 45: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_2_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 45: Can not increase nstlist because an NVE ensemble is used 45: Using 1 MPI thread @@ -79701,14 +79706,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 193.2 +45: Time: 0.174 0.087 199.9 45: (ns/day) (hour/ns) -45: Performance: 1560.829 0.015 +45: Performance: 16.916 1.419 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_2_sim1.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_2_sim2.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/2 (260 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/2 (508 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/3 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_3_input.mdp]: @@ -79753,9 +79758,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 195.3 +45: Time: 0.164 0.082 199.9 45: (ns/day) (hour/ns) -45: Performance: 1344.814 0.018 +45: Performance: 17.892 1.341 45: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_3_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 45: Changing nstlist from 8 to 25, rlist from 0.76 to 0.916 45: @@ -79771,15 +79776,15 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 193.6 +45: Time: 0.174 0.087 199.9 45: (ns/day) (hour/ns) -45: Performance: 1535.159 0.016 +45: Performance: 16.852 1.424 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_3_sim1.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_3_sim2.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/3 (259 ms) -45: [----------] 4 tests from SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest (533 ms total) +45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/3 (465 ms) +45: [----------] 4 tests from SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest (1374 ms total) 45: 45: [----------] 8 tests from SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/0 @@ -79822,9 +79827,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.001 0.001 192.3 +45: Time: 0.008 0.004 197.7 45: (ns/day) (hour/ns) -45: Performance: 2086.215 0.012 +45: Performance: 359.701 0.067 45: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_0_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 45: Can not increase nstlist because an NVE ensemble is used 45: Using 1 MPI thread @@ -79839,14 +79844,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 195.1 +45: Time: 0.117 0.059 199.9 45: (ns/day) (hour/ns) -45: Performance: 1722.279 0.014 +45: Performance: 25.057 0.958 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_0_sim1.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_0_sim2.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/0 (7 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/0 (77 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/1 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_1_input.mdp]: @@ -79887,9 +79892,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.001 0.001 192.2 +45: Time: 0.112 0.056 199.8 45: (ns/day) (hour/ns) -45: Performance: 2034.542 0.012 +45: Performance: 26.129 0.919 45: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_1_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 45: Can not increase nstlist because an NVE ensemble is used 45: Using 1 MPI thread @@ -79904,14 +79909,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 194.9 +45: Time: 0.115 0.058 199.9 45: (ns/day) (hour/ns) -45: Performance: 1700.412 0.014 +45: Performance: 25.518 0.941 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_1_sim1.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_1_sim2.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/1 (7 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/1 (126 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/2 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_2_input.mdp]: @@ -79948,9 +79953,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.001 0.001 192.2 +45: Time: 0.111 0.056 199.8 45: (ns/day) (hour/ns) -45: Performance: 1989.856 0.012 +45: Performance: 26.464 0.907 45: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_2_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 45: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 45: @@ -79966,14 +79971,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 194.7 +45: Time: 0.113 0.056 199.9 45: (ns/day) (hour/ns) -45: Performance: 1820.506 0.013 +45: Performance: 26.075 0.920 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_2_sim1.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_2_sim2.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/2 (7 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/2 (125 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/3 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_3_input.mdp]: @@ -80010,9 +80015,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.001 0.001 191.0 +45: Time: 0.111 0.056 199.8 45: (ns/day) (hour/ns) -45: Performance: 2020.529 0.012 +45: Performance: 26.455 0.907 45: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_3_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 45: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 45: @@ -80028,14 +80033,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 193.6 +45: Time: 0.112 0.056 199.9 45: (ns/day) (hour/ns) -45: Performance: 1732.938 0.014 +45: Performance: 26.170 0.917 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_3_sim1.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_3_sim2.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/3 (7 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/3 (124 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/4 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_4_input.mdp]: @@ -80084,9 +80089,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 193.0 +45: Time: 0.137 0.068 199.8 45: (ns/day) (hour/ns) -45: Performance: 1726.624 0.014 +45: Performance: 21.458 1.118 45: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_4_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 45: Can not increase nstlist because an NVE ensemble is used 45: Using 1 MPI thread @@ -80101,14 +80106,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 196.0 +45: Time: 0.140 0.070 199.9 45: (ns/day) (hour/ns) -45: Performance: 1568.779 0.015 +45: Performance: 21.028 1.141 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_4_sim1.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_4_sim2.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/4 (257 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/4 (396 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/5 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_5_input.mdp]: @@ -80157,9 +80162,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 192.0 +45: Time: 0.132 0.066 199.8 45: (ns/day) (hour/ns) -45: Performance: 1663.676 0.014 +45: Performance: 22.260 1.078 45: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_5_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 45: Can not increase nstlist because an NVE ensemble is used 45: Using 1 MPI thread @@ -80174,14 +80179,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 195.4 +45: Time: 0.134 0.067 199.9 45: (ns/day) (hour/ns) -45: Performance: 1519.633 0.016 +45: Performance: 21.865 1.098 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_5_sim1.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_5_sim2.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/5 (261 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/5 (438 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/6 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_6_input.mdp]: @@ -80226,9 +80231,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 192.1 +45: Time: 0.220 0.110 199.9 45: (ns/day) (hour/ns) -45: Performance: 1679.551 0.014 +45: Performance: 13.340 1.799 45: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_6_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 45: Changing nstlist from 8 to 25, rlist from 0.76 to 0.916 45: @@ -80244,14 +80249,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 195.5 +45: Time: 0.225 0.112 199.9 45: (ns/day) (hour/ns) -45: Performance: 1511.802 0.016 +45: Performance: 13.078 1.835 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_6_sim1.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_6_sim2.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/6 (258 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/6 (652 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/7 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_7_input.mdp]: @@ -80296,9 +80301,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 192.4 +45: Time: 0.138 0.069 199.8 45: (ns/day) (hour/ns) -45: Performance: 1611.034 0.015 +45: Performance: 21.245 1.130 45: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_7_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 45: Changing nstlist from 8 to 25, rlist from 0.76 to 0.916 45: @@ -80314,20 +80319,20 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 195.3 +45: Time: 0.136 0.068 199.9 45: (ns/day) (hour/ns) -45: Performance: 1462.629 0.016 +45: Performance: 21.662 1.108 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_7_sim1.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_7_sim2.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/7 (258 ms) -45: [----------] 8 tests from SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest (1062 ms total) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/7 (629 ms) +45: [----------] 8 tests from SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest (2567 ms total) 45: 45: [----------] Global test environment tear-down -45: [==========] 24 tests from 7 test cases ran. (2716 ms total) +45: [==========] 24 tests from 7 test cases ran. (6148 ms total) 45: [ PASSED ] 24 tests. -45/54 Test #45: MdrunTests .......................... Passed 2.74 sec +45/54 Test #45: MdrunTests .......................... Passed 6.18 sec test 46 Start 46: MdrunNonIntegratorTests @@ -80347,9 +80352,9 @@ 46: 46: Coulomb LJ comb. SIMD Mcycles Mcycles/it. pairs/cycle 46: total useful -46: Ewald all geom. 4xM 0.228 0.2284 4.6398 2.7575 -46: [ OK ] NonbondedBenchTest.BasicEndToEndTest (26 ms) -46: [----------] 1 test from NonbondedBenchTest (26 ms total) +46: Ewald all geom. 4xM 0.250 0.2497 4.2437 2.5221 +46: [ OK ] NonbondedBenchTest.BasicEndToEndTest (30 ms) +46: [----------] 1 test from NonbondedBenchTest (30 ms total) 46: 46: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 @@ -80400,7 +80405,7 @@ 46: Norm of force = 8.77219865482161e+01 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (261 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (379 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -80452,7 +80457,7 @@ 46: Norm of force = 1.84530029253756e+02 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (243 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (564 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -80502,7 +80507,7 @@ 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 turning H bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (66 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (247 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -80559,7 +80564,7 @@ 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning H bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (67 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (213 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -80619,7 +80624,7 @@ 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 3.000 Last energy frame read 2 time 3.000 turning all bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (10 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (144 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -80686,8 +80691,8 @@ 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning all bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (11 ms) -46: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (658 ms total) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (192 ms) +46: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (1739 ms total) 46: 46: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 @@ -80727,7 +80732,7 @@ 46: Norm of force = 1.63839399694378e+00 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (3 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (10 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -80768,7 +80773,7 @@ 46: Norm of force = 1.05251679559258e+00 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (4 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (14 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -80819,7 +80824,7 @@ 46: Norm of force = 1.05251679559258e+00 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (3 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (14 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -80868,7 +80873,7 @@ 46: Norm of force = 4.62274878665467e+03 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (68 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (99 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -80920,7 +80925,7 @@ 46: Norm of force = 3.61390332564874e+03 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (67 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (105 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -80982,8 +80987,8 @@ 46: Norm of force = 6.06436286976271e+03 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (67 ms) -46: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (212 ms total) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (102 ms) +46: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (344 ms total) 46: 46: [----------] 5 tests from NormalModesWorks/NormalModesTest 46: [ RUN ] NormalModesWorks/NormalModesTest.WithinTolerances/0 @@ -81042,7 +81047,7 @@ 46: Full matrix storage format, nrow=18, ncols=18 46: Writing eigenfrequencies - negative eigenvalues will be set to zero. 46: Cannot compute entropy when -first = 7 -46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/0 (6 ms) +46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/0 (161 ms) 46: [ RUN ] NormalModesWorks/NormalModesTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalModesWorks_NormalModesTest_WithinTolerances_1_input.mdp]: @@ -81108,7 +81113,7 @@ 46: Full matrix storage format, nrow=768, ncols=768 46: Writing eigenfrequencies - negative eigenvalues will be set to zero. 46: Cannot compute entropy when -first = 7 -46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/1 (978 ms) +46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/1 (9041 ms) 46: [ RUN ] NormalModesWorks/NormalModesTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalModesWorks_NormalModesTest_WithinTolerances_2_input.mdp]: @@ -81165,7 +81170,7 @@ 46: Full matrix storage format, nrow=18, ncols=18 46: Writing eigenfrequencies - negative eigenvalues will be set to zero. 46: Cannot compute entropy when -first = 7 -46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/2 (252 ms) +46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/2 (412 ms) 46: [ RUN ] NormalModesWorks/NormalModesTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalModesWorks_NormalModesTest_WithinTolerances_3_input.mdp]: @@ -81224,7 +81229,7 @@ 46: Full matrix storage format, nrow=9, ncols=9 46: Writing eigenfrequencies - negative eigenvalues will be set to zero. 46: Cannot compute entropy when -first = 7 -46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/3 (247 ms) +46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/3 (394 ms) 46: [ RUN ] NormalModesWorks/NormalModesTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalModesWorks_NormalModesTest_WithinTolerances_4_input.mdp]: @@ -81283,8 +81288,8 @@ 46: Full matrix storage format, nrow=18, ncols=18 46: Writing eigenfrequencies - negative eigenvalues will be set to zero. 46: Cannot compute entropy when -first = 7 -46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/4 (6 ms) -46: [----------] 5 tests from NormalModesWorks/NormalModesTest (1489 ms total) +46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/4 (134 ms) +46: [----------] 5 tests from NormalModesWorks/NormalModesTest (10142 ms total) 46: 46: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 @@ -81327,9 +81332,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.6 +46: Time: 0.117 0.058 199.8 46: (ns/day) (hour/ns) -46: Performance: 2106.906 0.011 +46: Performance: 25.119 0.955 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -81343,18 +81348,18 @@ 46: trr version: GMX_trn_file (double precision) 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 19 % of the run time was spent in pair search, +46: NOTE: 48 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 191.4 +46: Time: 0.034 0.017 199.7 46: (ns/day) (hour/ns) -46: Performance: 4263.387 0.006 +46: Performance: 86.574 0.277 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 (6 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 (88 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_input.mdp]: @@ -81395,9 +81400,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 195.6 +46: Time: 0.129 0.064 199.9 46: (ns/day) (hour/ns) -46: Performance: 1815.677 0.013 +46: Performance: 22.844 1.051 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -81410,18 +81415,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 20 % of the run time was spent in pair search, +46: NOTE: 49 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 192.3 +46: Time: 0.034 0.017 199.7 46: (ns/day) (hour/ns) -46: Performance: 4293.097 0.006 +46: Performance: 86.944 0.276 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 (6 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 (92 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_input.mdp]: @@ -81458,9 +81463,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.9 +46: Time: 0.106 0.053 199.8 46: (ns/day) (hour/ns) -46: Performance: 2027.845 0.012 +46: Performance: 27.637 0.868 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Changing nstlist from 8 to 100, rlist from 0.708 to 0.73 46: @@ -81474,18 +81479,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 20 % of the run time was spent in pair search, +46: NOTE: 48 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 192.5 +46: Time: 0.034 0.017 199.7 46: (ns/day) (hour/ns) -46: Performance: 4039.734 0.006 +46: Performance: 86.819 0.276 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 (6 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 (82 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_input.mdp]: @@ -81522,9 +81527,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.7 +46: Time: 0.110 0.055 199.8 46: (ns/day) (hour/ns) -46: Performance: 1918.590 0.013 +46: Performance: 26.703 0.899 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 46: @@ -81538,18 +81543,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 19 % of the run time was spent in pair search, +46: NOTE: 43 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 192.7 +46: Time: 0.038 0.019 199.8 46: (ns/day) (hour/ns) -46: Performance: 3826.456 0.006 +46: Performance: 77.433 0.310 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 (7 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 (88 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_input.mdp]: @@ -81598,9 +81603,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.7 +46: Time: 0.128 0.064 199.8 46: (ns/day) (hour/ns) -46: Performance: 1691.077 0.014 +46: Performance: 22.866 1.050 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -81613,18 +81618,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 23 % of the run time was spent in pair search, +46: NOTE: 50 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 191.8 +46: Time: 0.035 0.018 199.7 46: (ns/day) (hour/ns) -46: Performance: 3613.251 0.007 +46: Performance: 82.645 0.290 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 (248 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 (356 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_input.mdp]: @@ -81673,9 +81678,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 195.6 +46: Time: 0.164 0.082 199.9 46: (ns/day) (hour/ns) -46: Performance: 1420.146 0.017 +46: Performance: 17.899 1.341 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -81688,18 +81693,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 23 % of the run time was spent in pair search, +46: NOTE: 47 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 192.3 +46: Time: 0.035 0.017 199.7 46: (ns/day) (hour/ns) -46: Performance: 3548.729 0.007 +46: Performance: 84.406 0.284 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 (247 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 (360 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_input.mdp]: @@ -81744,9 +81749,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.1 +46: Time: 0.138 0.069 199.9 46: (ns/day) (hour/ns) -46: Performance: 1743.235 0.014 +46: Performance: 21.282 1.128 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Changing nstlist from 8 to 100, rlist from 0.734 to 0.826 46: @@ -81760,18 +81765,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 23 % of the run time was spent in pair search, +46: NOTE: 41 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 192.6 +46: Time: 0.041 0.021 199.8 46: (ns/day) (hour/ns) -46: Performance: 3461.008 0.007 +46: Performance: 70.715 0.339 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 (248 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 (387 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_input.mdp]: @@ -81816,9 +81821,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 193.1 +46: Time: 0.162 0.081 199.9 46: (ns/day) (hour/ns) -46: Performance: 1617.378 0.015 +46: Performance: 18.119 1.325 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Changing nstlist from 8 to 25, rlist from 0.76 to 0.916 46: @@ -81832,18 +81837,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 23 % of the run time was spent in pair search, +46: NOTE: 43 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 192.9 +46: Time: 0.038 0.019 199.7 46: (ns/day) (hour/ns) -46: Performance: 3514.315 0.007 +46: Performance: 76.973 0.312 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 (244 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 (364 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_input.mdp]: @@ -81909,9 +81914,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 195.4 +46: Time: 0.418 0.209 199.9 46: (ns/day) (hour/ns) -46: Performance: 751.017 0.032 +46: Performance: 7.026 3.416 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -81924,18 +81929,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 17 % of the run time was spent in pair search, +46: NOTE: 31 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 193.1 +46: Time: 0.053 0.026 199.8 46: (ns/day) (hour/ns) -46: Performance: 1945.860 0.012 +46: Performance: 55.682 0.431 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 (16 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 (276 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_input.mdp]: @@ -82001,9 +82006,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 195.7 +46: Time: 0.480 0.240 200.0 46: (ns/day) (hour/ns) -46: Performance: 701.822 0.034 +46: Performance: 6.114 3.925 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -82016,18 +82021,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 16 % of the run time was spent in pair search, +46: NOTE: 31 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.7 +46: Time: 0.054 0.027 199.8 46: (ns/day) (hour/ns) -46: Performance: 1812.472 0.013 +46: Performance: 54.726 0.439 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 (17 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 (303 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_input.mdp]: @@ -82089,9 +82094,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 195.3 +46: Time: 0.401 0.201 199.9 46: (ns/day) (hour/ns) -46: Performance: 753.313 0.032 +46: Performance: 7.324 3.277 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Changing nstlist from 8 to 100, rlist from 0.745 to 0.873 46: @@ -82105,18 +82110,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 16 % of the run time was spent in pair search, +46: NOTE: 29 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.8 +46: Time: 0.057 0.028 199.8 46: (ns/day) (hour/ns) -46: Performance: 1800.817 0.013 +46: Performance: 51.662 0.465 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 (25 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 (272 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_input.mdp]: @@ -82178,9 +82183,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.005 0.002 196.1 +46: Time: 0.648 0.324 200.0 46: (ns/day) (hour/ns) -46: Performance: 603.861 0.040 +46: Performance: 4.531 5.297 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Changing nstlist from 8 to 40, rlist from 0.727 to 0.874 46: @@ -82194,19 +82199,19 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 17 % of the run time was spent in pair search, +46: NOTE: 31 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.3 +46: Time: 0.060 0.030 199.8 46: (ns/day) (hour/ns) -46: Performance: 1897.319 0.013 +46: Performance: 48.915 0.491 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 (23 ms) -46: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest (1093 ms total) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 (399 ms) +46: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest (3067 ms total) 46: 46: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 @@ -82260,9 +82265,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 194.7 +46: Time: 0.172 0.086 199.9 46: (ns/day) (hour/ns) -46: Performance: 770.556 0.031 +46: Performance: 17.114 1.402 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -82275,18 +82280,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 36 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 193.4 +46: Time: 0.046 0.023 199.6 46: (ns/day) (hour/ns) -46: Performance: 1399.181 0.017 +46: Performance: 64.301 0.373 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 (17 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 (136 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_input.mdp]: @@ -82338,9 +82343,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 194.4 +46: Time: 0.173 0.086 199.8 46: (ns/day) (hour/ns) -46: Performance: 787.397 0.030 +46: Performance: 16.996 1.412 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -82353,18 +82358,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 39 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.6 +46: Time: 0.044 0.022 199.6 46: (ns/day) (hour/ns) -46: Performance: 1562.809 0.015 +46: Performance: 66.051 0.363 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 (17 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 (135 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_input.mdp]: @@ -82416,9 +82421,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 194.5 +46: Time: 0.175 0.088 199.8 46: (ns/day) (hour/ns) -46: Performance: 781.504 0.031 +46: Performance: 16.727 1.435 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -82431,18 +82436,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 41 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 193.0 +46: Time: 0.047 0.024 199.6 46: (ns/day) (hour/ns) -46: Performance: 1467.157 0.016 +46: Performance: 62.170 0.386 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 (18 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 (138 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_input.mdp]: @@ -82494,9 +82499,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 194.8 +46: Time: 0.172 0.086 199.8 46: (ns/day) (hour/ns) -46: Performance: 729.410 0.033 +46: Performance: 17.111 1.403 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -82509,18 +82514,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 38 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 193.0 +46: Time: 0.043 0.022 199.6 46: (ns/day) (hour/ns) -46: Performance: 1518.510 0.016 +46: Performance: 67.543 0.355 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 (17 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 (133 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_input.mdp]: @@ -82572,9 +82577,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 194.5 +46: Time: 0.169 0.085 199.8 46: (ns/day) (hour/ns) -46: Performance: 797.798 0.030 +46: Performance: 17.325 1.385 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -82587,18 +82592,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 38 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.4 +46: Time: 0.043 0.022 199.6 46: (ns/day) (hour/ns) -46: Performance: 1524.145 0.016 +46: Performance: 67.662 0.355 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 (17 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 (132 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_input.mdp]: @@ -82650,9 +82655,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 194.8 +46: Time: 0.169 0.085 199.8 46: (ns/day) (hour/ns) -46: Performance: 795.223 0.030 +46: Performance: 17.346 1.384 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -82665,18 +82670,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 38 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.6 +46: Time: 0.043 0.022 199.7 46: (ns/day) (hour/ns) -46: Performance: 1523.391 0.016 +46: Performance: 67.799 0.354 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 (17 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 (133 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_input.mdp]: @@ -82728,9 +82733,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 194.9 +46: Time: 0.169 0.085 199.8 46: (ns/day) (hour/ns) -46: Performance: 724.946 0.033 +46: Performance: 17.319 1.386 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -82743,18 +82748,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 38 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.6 +46: Time: 0.043 0.022 199.6 46: (ns/day) (hour/ns) -46: Performance: 1550.225 0.015 +46: Performance: 67.711 0.354 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 (17 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 (132 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_input.mdp]: @@ -82806,9 +82811,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 194.9 +46: Time: 0.170 0.085 199.9 46: (ns/day) (hour/ns) -46: Performance: 751.842 0.032 +46: Performance: 17.271 1.390 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -82821,18 +82826,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 33 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.7 +46: Time: 0.011 0.005 198.6 46: (ns/day) (hour/ns) -46: Performance: 1549.055 0.015 +46: Performance: 277.067 0.087 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 (18 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 (118 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_input.mdp]: @@ -82884,9 +82889,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 194.6 +46: Time: 0.172 0.086 199.8 46: (ns/day) (hour/ns) -46: Performance: 785.590 0.031 +46: Performance: 17.097 1.404 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -82899,18 +82904,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 38 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.9 +46: Time: 0.043 0.022 199.6 46: (ns/day) (hour/ns) -46: Performance: 1586.964 0.015 +46: Performance: 67.675 0.355 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 (17 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 (134 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_input.mdp]: @@ -82962,9 +82967,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 194.6 +46: Time: 0.170 0.085 199.8 46: (ns/day) (hour/ns) -46: Performance: 718.185 0.033 +46: Performance: 17.274 1.389 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -82977,18 +82982,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 38 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.8 +46: Time: 0.043 0.022 199.6 46: (ns/day) (hour/ns) -46: Performance: 1582.480 0.015 +46: Performance: 67.676 0.355 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 (17 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 (134 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_input.mdp]: @@ -83040,9 +83045,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 194.4 +46: Time: 0.171 0.085 199.8 46: (ns/day) (hour/ns) -46: Performance: 779.822 0.031 +46: Performance: 17.194 1.396 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -83055,18 +83060,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 42 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.3 +46: Time: 0.047 0.023 199.6 46: (ns/day) (hour/ns) -46: Performance: 1514.031 0.016 +46: Performance: 62.717 0.383 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 (17 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 (135 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_input.mdp]: @@ -83118,9 +83123,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 196.7 +46: Time: 0.218 0.109 199.9 46: (ns/day) (hour/ns) -46: Performance: 690.417 0.035 +46: Performance: 13.496 1.778 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -83133,18 +83138,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 38 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 190.9 +46: Time: 0.043 0.022 199.6 46: (ns/day) (hour/ns) -46: Performance: 1558.460 0.015 +46: Performance: 67.701 0.354 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 (17 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 (154 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_input.mdp]: @@ -83196,9 +83201,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 196.8 +46: Time: 0.217 0.109 199.9 46: (ns/day) (hour/ns) -46: Performance: 685.653 0.035 +46: Performance: 13.508 1.777 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -83211,18 +83216,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 38 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.5 +46: Time: 0.043 0.022 199.6 46: (ns/day) (hour/ns) -46: Performance: 1546.722 0.016 +46: Performance: 67.499 0.356 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 (18 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 (154 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_input.mdp]: @@ -83274,9 +83279,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 196.8 +46: Time: 0.218 0.109 199.9 46: (ns/day) (hour/ns) -46: Performance: 668.032 0.036 +46: Performance: 13.459 1.783 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -83289,18 +83294,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 38 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 193.2 +46: Time: 0.043 0.022 199.6 46: (ns/day) (hour/ns) -46: Performance: 1538.610 0.016 +46: Performance: 67.692 0.355 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 (17 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 (155 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_input.mdp]: @@ -83352,9 +83357,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 196.8 +46: Time: 0.218 0.109 199.9 46: (ns/day) (hour/ns) -46: Performance: 686.723 0.035 +46: Performance: 13.452 1.784 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -83367,18 +83372,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 38 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 193.0 +46: Time: 0.043 0.022 199.6 46: (ns/day) (hour/ns) -46: Performance: 1558.855 0.015 +46: Performance: 67.590 0.355 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 (17 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 (154 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_input.mdp]: @@ -83430,9 +83435,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 196.9 +46: Time: 0.218 0.109 199.9 46: (ns/day) (hour/ns) -46: Performance: 690.108 0.035 +46: Performance: 13.464 1.783 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -83445,18 +83450,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 38 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.2 +46: Time: 0.043 0.022 199.6 46: (ns/day) (hour/ns) -46: Performance: 1523.391 0.016 +46: Performance: 67.559 0.355 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 (17 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 (155 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_input.mdp]: @@ -83507,10 +83512,13 @@ 46: 46: Writing final coordinates. 46: +46: NOTE: 20 % of the run time was spent in pair search, +46: you might want to increase nstlist (this has no effect on accuracy) +46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.006 0.003 197.5 +46: Time: 0.033 0.017 199.5 46: (ns/day) (hour/ns) -46: Performance: 515.315 0.047 +46: Performance: 88.424 0.271 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -83523,18 +83531,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 38 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.3 +46: Time: 0.044 0.022 199.6 46: (ns/day) (hour/ns) -46: Performance: 1496.016 0.016 +46: Performance: 67.265 0.357 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 (18 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 (62 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_input.mdp]: @@ -83586,9 +83594,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.005 0.003 197.4 +46: Time: 0.218 0.109 199.9 46: (ns/day) (hour/ns) -46: Performance: 578.894 0.041 +46: Performance: 13.469 1.782 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -83601,18 +83609,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 38 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.5 +46: Time: 0.043 0.022 199.6 46: (ns/day) (hour/ns) -46: Performance: 1471.362 0.016 +46: Performance: 67.526 0.355 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 (19 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 (155 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_input.mdp]: @@ -83664,9 +83672,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.005 0.003 197.1 +46: Time: 0.231 0.115 199.9 46: (ns/day) (hour/ns) -46: Performance: 572.706 0.042 +46: Performance: 12.734 1.885 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -83679,18 +83687,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 37 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.6 +46: Time: 0.045 0.023 199.6 46: (ns/day) (hour/ns) -46: Performance: 1549.445 0.015 +46: Performance: 65.041 0.369 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 (17 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 (165 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_input.mdp]: @@ -83742,9 +83750,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.005 0.003 197.2 +46: Time: 0.232 0.116 199.9 46: (ns/day) (hour/ns) -46: Performance: 580.203 0.041 +46: Performance: 12.676 1.893 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -83757,18 +83765,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 38 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.5 +46: Time: 0.043 0.022 199.6 46: (ns/day) (hour/ns) -46: Performance: 1567.980 0.015 +46: Performance: 67.436 0.356 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 (18 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 (161 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_input.mdp]: @@ -83820,9 +83828,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.005 0.003 197.2 +46: Time: 0.228 0.114 199.9 46: (ns/day) (hour/ns) -46: Performance: 572.546 0.042 +46: Performance: 12.861 1.866 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -83835,18 +83843,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 38 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.7 +46: Time: 0.044 0.022 199.6 46: (ns/day) (hour/ns) -46: Performance: 1492.030 0.016 +46: Performance: 66.765 0.359 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 (18 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 (161 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_input.mdp]: @@ -83898,9 +83906,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.005 0.003 197.1 +46: Time: 0.223 0.112 199.9 46: (ns/day) (hour/ns) -46: Performance: 581.792 0.041 +46: Performance: 13.162 1.823 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Can not increase nstlist because an NVE ensemble is used 46: Using 1 MPI thread @@ -83913,18 +83921,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 36 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.3 +46: Time: 0.046 0.023 199.6 46: (ns/day) (hour/ns) -46: Performance: 1548.666 0.015 +46: Performance: 63.667 0.377 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 (18 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 (158 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_input.mdp]: @@ -83972,9 +83980,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.005 0.003 195.4 +46: Time: 0.223 0.112 199.9 46: (ns/day) (hour/ns) -46: Performance: 583.224 0.041 +46: Performance: 13.148 1.825 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 46: @@ -83988,18 +83996,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 35 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.7 +46: Time: 0.048 0.024 199.7 46: (ns/day) (hour/ns) -46: Performance: 1482.337 0.016 +46: Performance: 61.589 0.390 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 (25 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 (167 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_input.mdp]: @@ -84047,9 +84055,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.005 0.002 195.7 +46: Time: 0.217 0.109 199.9 46: (ns/day) (hour/ns) -46: Performance: 592.365 0.041 +46: Performance: 13.505 1.777 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 46: @@ -84063,18 +84071,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 35 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 193.0 +46: Time: 0.048 0.024 199.6 46: (ns/day) (hour/ns) -46: Performance: 1473.474 0.016 +46: Performance: 61.652 0.389 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 (24 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 (166 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_input.mdp]: @@ -84122,9 +84130,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.005 0.003 195.5 +46: Time: 0.218 0.109 199.9 46: (ns/day) (hour/ns) -46: Performance: 585.441 0.041 +46: Performance: 13.474 1.781 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 46: @@ -84138,18 +84146,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 35 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.3 +46: Time: 0.047 0.024 199.7 46: (ns/day) (hour/ns) -46: Performance: 1475.945 0.016 +46: Performance: 61.850 0.388 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 (24 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 (164 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_input.mdp]: @@ -84197,9 +84205,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.005 0.002 195.5 +46: Time: 0.219 0.110 199.9 46: (ns/day) (hour/ns) -46: Performance: 590.321 0.041 +46: Performance: 13.413 1.789 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 46: @@ -84213,18 +84221,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 35 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 191.5 +46: Time: 0.047 0.024 199.7 46: (ns/day) (hour/ns) -46: Performance: 1456.405 0.016 +46: Performance: 61.879 0.388 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 (25 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 (168 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_input.mdp]: @@ -84272,9 +84280,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.005 0.002 195.5 +46: Time: 0.218 0.109 199.9 46: (ns/day) (hour/ns) -46: Performance: 592.593 0.040 +46: Performance: 13.485 1.780 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 46: @@ -84288,18 +84296,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 35 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.9 +46: Time: 0.047 0.024 199.7 46: (ns/day) (hour/ns) -46: Performance: 1338.968 0.018 +46: Performance: 61.794 0.388 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 (24 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 (167 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_input.mdp]: @@ -84347,9 +84355,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.005 0.002 195.5 +46: Time: 0.217 0.108 199.9 46: (ns/day) (hour/ns) -46: Performance: 594.365 0.040 +46: Performance: 13.540 1.773 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 46: @@ -84363,18 +84371,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 35 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.6 +46: Time: 0.047 0.024 199.7 46: (ns/day) (hour/ns) -46: Performance: 1500.023 0.016 +46: Performance: 61.746 0.389 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 (25 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 (165 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_input.mdp]: @@ -84422,9 +84430,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.005 0.002 195.3 +46: Time: 0.218 0.109 199.9 46: (ns/day) (hour/ns) -46: Performance: 597.362 0.040 +46: Performance: 13.491 1.779 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 46: @@ -84438,18 +84446,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 35 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.7 +46: Time: 0.047 0.024 199.7 46: (ns/day) (hour/ns) -46: Performance: 1502.950 0.016 +46: Performance: 61.778 0.388 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 (24 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 (165 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_input.mdp]: @@ -84497,9 +84505,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.005 0.002 195.2 +46: Time: 0.217 0.108 199.9 46: (ns/day) (hour/ns) -46: Performance: 595.341 0.040 +46: Performance: 13.557 1.770 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 46: @@ -84513,18 +84521,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 35 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.3 +46: Time: 0.047 0.024 199.7 46: (ns/day) (hour/ns) -46: Performance: 1501.851 0.016 +46: Performance: 61.787 0.388 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 (25 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 (165 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_input.mdp]: @@ -84572,9 +84580,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.005 0.002 194.4 +46: Time: 0.217 0.109 199.9 46: (ns/day) (hour/ns) -46: Performance: 591.966 0.041 +46: Performance: 13.534 1.773 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 46: @@ -84588,18 +84596,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 35 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.4 +46: Time: 0.047 0.024 199.7 46: (ns/day) (hour/ns) -46: Performance: 1483.408 0.016 +46: Performance: 61.750 0.389 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 (24 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 (165 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_input.mdp]: @@ -84647,9 +84655,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.005 0.002 195.5 +46: Time: 0.218 0.109 199.9 46: (ns/day) (hour/ns) -46: Performance: 591.001 0.041 +46: Performance: 13.469 1.782 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 46: @@ -84663,18 +84671,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 35 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.8 +46: Time: 0.047 0.024 199.7 46: (ns/day) (hour/ns) -46: Performance: 1501.485 0.016 +46: Performance: 61.798 0.388 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 (24 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 (165 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_input.mdp]: @@ -84722,9 +84730,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.005 0.003 195.1 +46: Time: 0.219 0.109 199.9 46: (ns/day) (hour/ns) -46: Performance: 586.444 0.041 +46: Performance: 13.422 1.788 46: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_sim.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 46: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 46: @@ -84738,19 +84746,19 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 34 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.3 +46: Time: 0.048 0.024 199.7 46: (ns/day) (hour/ns) -46: Performance: 1437.711 0.017 +46: Performance: 60.546 0.396 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_sim1.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_sim2.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 (25 ms) -46: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest (652 ms total) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 (168 ms) +46: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest (4920 ms total) 46: 46: [----------] 2 tests from Angles1/SimpleMdrunTest 46: [ RUN ] Angles1/SimpleMdrunTest.WithinTolerances/0 @@ -84798,12 +84806,12 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 195.8 +46: Time: 0.399 0.200 200.0 46: (ns/day) (hour/ns) -46: Performance: 2442.741 0.010 +46: Performance: 22.058 1.088 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Angles1_SimpleMdrunTest_WithinTolerances_0.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 5 time 0.020 Reading energy frame 6 time 0.024 Reading energy frame 7 time 0.028 Reading energy frame 8 time 0.032 Reading energy frame 9 time 0.036 Reading energy frame 10 time 0.040 Reading energy frame 11 time 0.044 Reading energy frame 12 time 0.048 Reading energy frame 13 time 0.050 Last energy frame read 13 time 0.050 -46: [ OK ] Angles1/SimpleMdrunTest.WithinTolerances/0 (6 ms) +46: [ OK ] Angles1/SimpleMdrunTest.WithinTolerances/0 (209 ms) 46: [ RUN ] Angles1/SimpleMdrunTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Angles1_SimpleMdrunTest_WithinTolerances_1_input.mdp]: @@ -84849,18 +84857,18 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 196.6 +46: Time: 0.450 0.225 200.0 46: (ns/day) (hour/ns) -46: Performance: 2697.676 0.009 +46: Performance: 19.577 1.226 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Angles1_SimpleMdrunTest_WithinTolerances_1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 5 time 0.020 Reading energy frame 6 time 0.024 Reading energy frame 7 time 0.028 Reading energy frame 8 time 0.032 Reading energy frame 9 time 0.036 Reading energy frame 10 time 0.040 Reading energy frame 11 time 0.044 Reading energy frame 12 time 0.048 Reading energy frame 13 time 0.050 Last energy frame read 13 time 0.050 -46: [ OK ] Angles1/SimpleMdrunTest.WithinTolerances/1 (6 ms) -46: [----------] 2 tests from Angles1/SimpleMdrunTest (12 ms total) +46: [ OK ] Angles1/SimpleMdrunTest.WithinTolerances/1 (233 ms) +46: [----------] 2 tests from Angles1/SimpleMdrunTest (442 ms total) 46: 46: [----------] Global test environment tear-down -46: [==========] 65 tests from 7 test cases ran. (4142 ms total) +46: [==========] 65 tests from 7 test cases ran. (20684 ms total) 46: [ PASSED ] 65 tests. -46/54 Test #46: MdrunNonIntegratorTests ............. Passed 4.19 sec +46/54 Test #46: MdrunNonIntegratorTests ............. Passed 20.72 sec test 47 Start 47: MdrunTpiTests @@ -84894,7 +84902,7 @@ 47: There are: 1 Other residues 47: Analysing residues not classified as Protein/DNA/RNA/Water and splitting into groups... 47: This run will generate roughly 0 Mb of data -47: [ OK ] Simple/TpiTest.ReproducesOutput/0 (301 ms) +47: [ OK ] Simple/TpiTest.ReproducesOutput/0 (379 ms) 47: [ RUN ] Simple/TpiTest.ReproducesOutput/1 47: Ignoring obsolete mdp entry 'ns_type' 47: Generated 331705 of the 331705 non-bonded parameter combinations @@ -84920,13 +84928,13 @@ 47: There are: 1 Other residues 47: Analysing residues not classified as Protein/DNA/RNA/Water and splitting into groups... 47: This run will generate roughly 0 Mb of data -47: [ OK ] Simple/TpiTest.ReproducesOutput/1 (244 ms) -47: [----------] 2 tests from Simple/TpiTest (545 ms total) +47: [ OK ] Simple/TpiTest.ReproducesOutput/1 (613 ms) +47: [----------] 2 tests from Simple/TpiTest (992 ms total) 47: 47: [----------] Global test environment tear-down -47: [==========] 2 tests from 1 test case ran. (545 ms total) +47: [==========] 2 tests from 1 test case ran. (992 ms total) 47: [ PASSED ] 2 tests. -47/54 Test #47: MdrunTpiTests ....................... Passed 0.56 sec +47/54 Test #47: MdrunTpiTests ....................... Passed 1.02 sec test 48 Start 48: MdrunMpiTests @@ -84941,7 +84949,7 @@ 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -436212059 +48: Setting the LD random seed to -1241663783 48: Generated 3 of the 3 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 3 of the 3 1-4 parameter combinations @@ -84973,20 +84981,20 @@ 48: starting mdrun 'spc2' 48: 0 steps, 0.0 ps. 48: -48: NOTE: 21 % of the run time was spent in domain decomposition, -48: 20 % of the run time was spent in pair search, +48: NOTE: 54 % of the run time was spent in domain decomposition, +48: 3 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: -48: NOTE: 6 % of the run time was spent communicating energies, +48: NOTE: 27 % of the run time was spent communicating energies, 48: you might want to increase some nst* mdp options 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.001 0.000 321.4 +48: Time: 0.290 0.088 329.6 48: (ns/day) (hour/ns) -48: Performance: 428.861 0.056 +48: Performance: 0.983 24.412 48: This run will generate roughly 0 Mb of data -48: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (13 ms) -48: [----------] 1 test from DomainDecompositionSpecialCasesTest (13 ms total) +48: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (412 ms) +48: [----------] 1 test from DomainDecompositionSpecialCasesTest (412 ms total) 48: 48: [----------] 4 tests from MimicTest 48: [ RUN ] MimicTest.OneQuantumMol @@ -84995,7 +85003,7 @@ 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -1350586895 +48: Setting the LD random seed to 2147307423 48: Generated 10 of the 10 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 10 of the 10 1-4 parameter combinations @@ -85029,24 +85037,24 @@ 48: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 17 % of the run time was spent in domain decomposition, -48: 13 % of the run time was spent in pair search, +48: NOTE: 93 % of the run time was spent in domain decomposition, +48: 3 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.001 0.000 381.5 +48: Time: 0.130 0.033 399.7 48: (ns/day) (hour/ns) -48: Performance: 309.998 0.077 +48: Performance: 2.648 9.065 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_OneQuantumMol.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.OneQuantumMol (5 ms) +48: [ OK ] MimicTest.OneQuantumMol (308 ms) 48: [ RUN ] MimicTest.AllQuantumMol 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -285286794 +48: Setting the LD random seed to 1065056253 48: Generated 10 of the 10 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 10 of the 10 1-4 parameter combinations @@ -85080,24 +85088,24 @@ 48: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 18 % of the run time was spent in domain decomposition, -48: 18 % of the run time was spent in pair search, +48: NOTE: 37 % of the run time was spent in domain decomposition, +48: 15 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.001 0.000 380.0 +48: Time: 0.352 0.088 399.9 48: (ns/day) (hour/ns) -48: Performance: 320.555 0.075 +48: Performance: 0.980 24.483 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.AllQuantumMol (4 ms) +48: [ OK ] MimicTest.AllQuantumMol (243 ms) 48: [ RUN ] MimicTest.TwoQuantumMol 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -52562947 +48: Setting the LD random seed to -136447241 48: Generated 10 of the 10 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 10 of the 10 1-4 parameter combinations @@ -85131,27 +85139,24 @@ 48: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 17 % of the run time was spent in domain decomposition, -48: 17 % of the run time was spent in pair search, +48: NOTE: 54 % of the run time was spent in domain decomposition, +48: 10 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: -48: NOTE: 7 % of the run time was spent communicating energies, -48: you might want to increase some nst* mdp options -48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.001 0.000 381.6 +48: Time: 0.529 0.132 399.9 48: (ns/day) (hour/ns) -48: Performance: 314.300 0.076 +48: Performance: 0.653 36.773 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.TwoQuantumMol (4 ms) +48: [ OK ] MimicTest.TwoQuantumMol (272 ms) 48: [ RUN ] MimicTest.BondCuts 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -4268051 +48: Setting the LD random seed to -276890641 48: Generated 2211 of the 2211 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 2211 of the 2211 1-4 parameter combinations @@ -85185,31 +85190,31 @@ 48: Reading frames from gro file 'Alanine dipeptide in water', 23 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 15 % of the run time was spent in domain decomposition, -48: 25 % of the run time was spent in pair search, +48: NOTE: 39 % of the run time was spent in domain decomposition, +48: 20 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.002 0.001 388.8 +48: Time: 0.417 0.104 399.9 48: (ns/day) (hour/ns) -48: Performance: 147.612 0.163 +48: Performance: 0.829 28.946 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300.368 K 48: Calculated rlist for 1x1 atom pair-list as 1.034 nm, buffer size 0.034 nm 48: Set rlist, assuming 4x4 atom pair-list, to 1.025 nm, buffer size 0.025 nm 48: Note that mdrun will redetermine rlist based on the actual pair-list setup 48: This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.BondCuts (15 ms) -48: [----------] 4 tests from MimicTest (28 ms total) +48: [ OK ] MimicTest.BondCuts (264 ms) +48: [----------] 4 tests from MimicTest (1087 ms total) 48: 48: [----------] 1 test from MultiSimTerminationTest 48: [ RUN ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts 48: [ OK ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (0 ms) -48: [----------] 1 test from MultiSimTerminationTest (0 ms total) +48: [----------] 1 test from MultiSimTerminationTest (1 ms total) 48: 48: [----------] 3 tests from PmeTest 48: [ RUN ] PmeTest.ReproducesEnergies -48: Setting the LD random seed to 1610409599 +48: Setting the LD random seed to -137013253 48: Generated 8 of the 10 non-bonded parameter combinations 48: Excluding 2 bonded neighbours molecule type 'Methanol' 48: Excluding 2 bonded neighbours molecule type 'SOL' @@ -85253,9 +85258,9 @@ 48: Writing final coordinates. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.087 0.022 399.4 +48: Time: 1.590 0.398 399.9 48: (ns/day) (hour/ns) -48: Performance: 83.427 0.288 +48: Performance: 4.563 5.259 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 48: Can not increase nstlist because an NVE ensemble is used @@ -85274,9 +85279,9 @@ 48: Writing final coordinates. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.087 0.022 399.3 +48: Time: 1.466 0.366 399.9 48: (ns/day) (hour/ns) -48: Performance: 83.674 0.287 +48: Performance: 4.951 4.848 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 48: Can not increase nstlist because an NVE ensemble is used @@ -85295,18 +85300,18 @@ 48: Writing final coordinates. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.084 0.021 399.3 +48: Time: 0.691 0.173 399.9 48: (ns/day) (hour/ns) -48: Performance: 85.924 0.279 +48: Performance: 10.497 2.286 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as double precision energy file -48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (92 ms) +48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (1540 ms) 48: [ RUN ] PmeTest.ScalesTheBox 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -893062 +48: Setting the LD random seed to -545325089 48: Generated 8 of the 10 non-bonded parameter combinations 48: Excluding 2 bonded neighbours molecule type 'Methanol' 48: Excluding 2 bonded neighbours molecule type 'SOL' @@ -85340,10 +85345,14 @@ 48: starting mdrun 'spc-and-methanol' 48: 0 steps, 0.0 ps. 48: +48: NOTE: 23 % of the run time was spent in domain decomposition, +48: 3 % of the run time was spent in pair search, +48: you might want to increase nstlist (this has no effect on accuracy) +48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.005 0.001 386.8 +48: Time: 0.057 0.014 398.8 48: (ns/day) (hour/ns) -48: Performance: 72.095 0.333 +48: Performance: 6.040 3.974 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_spc-and-methanol_PmeOnCpu.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K 48: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -85352,14 +85361,14 @@ 48: Calculating fourier grid dimensions for X Y Z 48: Using a fourier grid of 28x28x28, spacing 0.107 0.107 0.107 48: This run will generate roughly 0 Mb of data -48: [ OK ] PmeTest.ScalesTheBox (9 ms) +48: [ OK ] PmeTest.ScalesTheBox (80 ms) 48: [ RUN ] PmeTest.ScalesTheBoxWithWalls 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -8537737 +48: Setting the LD random seed to -536961289 48: Generated 8 of the 10 non-bonded parameter combinations 48: Excluding 2 bonded neighbours molecule type 'Methanol' 48: Excluding 2 bonded neighbours molecule type 'SOL' @@ -85394,10 +85403,14 @@ 48: starting mdrun 'spc-and-methanol' 48: 0 steps, 0.0 ps. 48: +48: NOTE: 19 % of the run time was spent in domain decomposition, +48: 1 % of the run time was spent in pair search, +48: you might want to increase nstlist (this has no effect on accuracy) +48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.019 0.005 396.0 +48: Time: 0.162 0.071 228.1 48: (ns/day) (hour/ns) -48: Performance: 18.390 1.305 +48: Performance: 1.220 19.671 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_spc-and-methanol_PmeOnCpu.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 966.268 K 48: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -85406,8 +85419,8 @@ 48: Calculating fourier grid dimensions for X Y Z 48: Using a fourier grid of 28x28x128, spacing 0.107 0.107 0.118 48: This run will generate roughly 0 Mb of data -48: [ OK ] PmeTest.ScalesTheBoxWithWalls (19 ms) -48: [----------] 3 tests from PmeTest (120 ms total) +48: [ OK ] PmeTest.ScalesTheBoxWithWalls (748 ms) +48: [----------] 3 tests from PmeTest (2368 ms total) 48: 48: [----------] 1 test from ReplicaExchangeTerminationTest 48: [ RUN ] ReplicaExchangeTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -85465,7 +85478,7 @@ 48: Norm of force = 8.77219865482160e+01 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (254 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (606 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -85519,7 +85532,7 @@ 48: Norm of force = 1.84530029253760e+02 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (240 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (907 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -85571,7 +85584,7 @@ 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 turning H bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (71 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (893 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -85630,7 +85643,7 @@ 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning H bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (73 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (2385 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -85692,7 +85705,7 @@ 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 3.000 Last energy frame read 2 time 3.000 turning all bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (14 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (855 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -85761,8 +85774,8 @@ 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning all bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (14 ms) -48: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (666 ms total) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (638 ms) +48: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (6285 ms total) 48: 48: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 @@ -85804,7 +85817,7 @@ 48: Norm of force = 1.63839399694378e+00 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (4 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (210 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -85847,7 +85860,7 @@ 48: Norm of force = 1.05251679559258e+00 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (5 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (220 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -85872,7 +85885,7 @@ 48: 48: There was 1 warning 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (2 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (3 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -85923,7 +85936,7 @@ 48: Norm of force = 4.62274878665467e+03 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (73 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (1902 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -85977,7 +85990,7 @@ 48: Norm of force = 3.61390332564874e+03 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (132 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (656 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -86010,16 +86023,16 @@ 48: 48: There was 1 warning 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (70 ms) -48: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (287 ms total) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (66 ms) +48: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (3057 ms total) 48: 48: [----------] Global test environment tear-down -48: [==========] 22 tests from 7 test cases ran. (1114 ms total) +48: [==========] 22 tests from 7 test cases ran. (13210 ms total) 48: [ PASSED ] 22 tests. 48: 48: YOU HAVE 4 DISABLED TESTS 48: -48/54 Test #48: MdrunMpiTests ....................... Passed 1.14 sec +48/54 Test #48: MdrunMpiTests ....................... Passed 13.25 sec test 49 Start 49: MdrunMpiCoordinationTestsOneRank @@ -86068,9 +86081,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.003 0.003 97.9 +49: Time: 0.006 0.006 99.5 49: (ns/day) (hour/ns) -49: Performance: 514.669 0.047 +49: Performance: 263.352 0.091 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -86110,9 +86123,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.2 +49: Time: 0.001 0.001 95.9 49: (ns/day) (hour/ns) -49: Performance: 995.089 0.024 +49: Performance: 2072.181 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -86153,10 +86166,13 @@ 49: 49: Writing final coordinates. 49: +49: NOTE: 26 % of the run time was spent in pair search, +49: you might want to increase nstlist (this has no effect on accuracy) +49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1092.110 0.022 +49: Performance: 1921.583 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -86198,9 +86214,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.009 0.009 99.5 49: (ns/day) (hour/ns) -49: Performance: 1213.671 0.020 +49: Performance: 169.741 0.141 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: @@ -86242,9 +86258,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.001 0.001 96.0 49: (ns/day) (hour/ns) -49: Performance: 1395.378 0.017 +49: Performance: 2678.519 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: @@ -86286,13 +86302,13 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.001 0.001 95.8 49: (ns/day) (hour/ns) -49: Performance: 1240.055 0.019 +49: Performance: 2693.745 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file -49: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (70 ms) -49: [----------] 1 test from BasicPropagators/PeriodicActionsTest (70 ms total) +49: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (102 ms) +49: [----------] 1 test from BasicPropagators/PeriodicActionsTest (103 ms total) 49: 49: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -86335,9 +86351,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.001 0.001 95.7 49: (ns/day) (hour/ns) -49: Performance: 1721.798 0.014 +49: Performance: 2729.550 0.009 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -86377,9 +86393,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 95.6 49: (ns/day) (hour/ns) -49: Performance: 1651.191 0.015 +49: Performance: 2655.428 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -86421,9 +86437,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.5 49: (ns/day) (hour/ns) -49: Performance: 1713.656 0.014 +49: Performance: 2675.030 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -86465,9 +86481,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.001 0.001 95.8 49: (ns/day) (hour/ns) -49: Performance: 1600.154 0.015 +49: Performance: 2691.391 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: @@ -86509,9 +86525,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.5 +49: Time: 0.001 0.001 96.0 49: (ns/day) (hour/ns) -49: Performance: 1502.950 0.016 +49: Performance: 2781.306 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: @@ -86553,12 +86569,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 95.4 49: (ns/day) (hour/ns) -49: Performance: 1802.397 0.013 +49: Performance: 2602.701 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (35 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (53 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -86599,9 +86615,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.2 +49: Time: 0.005 0.005 99.3 49: (ns/day) (hour/ns) -49: Performance: 2261.598 0.011 +49: Performance: 308.678 0.078 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -86641,9 +86657,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 95.6 49: (ns/day) (hour/ns) -49: Performance: 2204.148 0.011 +49: Performance: 2685.525 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -86685,9 +86701,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.9 +49: Time: 0.001 0.001 95.6 49: (ns/day) (hour/ns) -49: Performance: 1931.221 0.012 +49: Performance: 2590.662 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -86729,9 +86745,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 95.5 49: (ns/day) (hour/ns) -49: Performance: 2103.310 0.011 +49: Performance: 2591.752 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: @@ -86773,9 +86789,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.5 +49: Time: 0.001 0.001 95.5 49: (ns/day) (hour/ns) -49: Performance: 1699.474 0.014 +49: Performance: 2610.421 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: @@ -86817,12 +86833,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.6 +49: Time: 0.001 0.001 95.7 49: (ns/day) (hour/ns) -49: Performance: 1591.473 0.015 +49: Performance: 2459.319 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (27 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (50 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -86865,7 +86881,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2326.508 0.010 +49: Performance: 2709.144 0.009 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -86907,7 +86923,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 95.5 49: (ns/day) (hour/ns) -49: Performance: 2316.013 0.010 +49: Performance: 2614.853 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -86949,9 +86965,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 95.7 49: (ns/day) (hour/ns) -49: Performance: 2467.198 0.010 +49: Performance: 2573.347 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -86993,9 +87009,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 95.4 49: (ns/day) (hour/ns) -49: Performance: 2453.442 0.010 +49: Performance: 2648.579 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: @@ -87037,9 +87053,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.9 +49: Time: 0.001 0.001 95.5 49: (ns/day) (hour/ns) -49: Performance: 2187.711 0.011 +49: Performance: 2664.617 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: @@ -87081,12 +87097,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.009 0.009 99.6 49: (ns/day) (hour/ns) -49: Performance: 2468.187 0.010 +49: Performance: 167.521 0.143 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (24 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (50 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -87123,9 +87139,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.009 0.009 99.6 49: (ns/day) (hour/ns) -49: Performance: 2397.118 0.010 +49: Performance: 167.928 0.143 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -87161,9 +87177,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 95.7 49: (ns/day) (hour/ns) -49: Performance: 2291.035 0.010 +49: Performance: 2753.953 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -87201,9 +87217,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 95.7 49: (ns/day) (hour/ns) -49: Performance: 2361.285 0.010 +49: Performance: 2697.283 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -87241,9 +87257,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 96.0 49: (ns/day) (hour/ns) -49: Performance: 2370.371 0.010 +49: Performance: 2548.860 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: @@ -87281,9 +87297,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.9 +49: Time: 0.001 0.001 96.1 49: (ns/day) (hour/ns) -49: Performance: 2376.772 0.010 +49: Performance: 2147.297 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: @@ -87321,12 +87337,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 95.7 49: (ns/day) (hour/ns) -49: Performance: 2352.269 0.010 +49: Performance: 2555.203 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (23 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (46 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -87363,9 +87379,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2517.611 0.010 +49: Performance: 2634.984 0.009 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -87401,9 +87417,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 95.6 49: (ns/day) (hour/ns) -49: Performance: 2353.168 0.010 +49: Performance: 2654.284 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -87441,9 +87457,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.7 49: (ns/day) (hour/ns) -49: Performance: 2303.026 0.010 +49: Performance: 2649.718 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -87481,9 +87497,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 95.8 49: (ns/day) (hour/ns) -49: Performance: 2309.934 0.010 +49: Performance: 2512.477 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: @@ -87521,9 +87537,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 95.6 49: (ns/day) (hour/ns) -49: Performance: 2315.142 0.010 +49: Performance: 2536.267 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: @@ -87560,16 +87576,13 @@ 49: 49: Writing final coordinates. 49: -49: NOTE: 21 % of the run time was spent in pair search, -49: you might want to increase nstlist (this has no effect on accuracy) -49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.5 +49: Time: 0.001 0.001 95.4 49: (ns/day) (hour/ns) -49: Performance: 1835.695 0.013 +49: Performance: 2527.942 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (23 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (40 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -87606,9 +87619,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 95.4 49: (ns/day) (hour/ns) -49: Performance: 2354.967 0.010 +49: Performance: 2680.850 0.009 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -87644,9 +87657,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 95.6 49: (ns/day) (hour/ns) -49: Performance: 2295.303 0.010 +49: Performance: 2588.485 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -87684,9 +87697,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.2 49: (ns/day) (hour/ns) -49: Performance: 2199.427 0.011 +49: Performance: 2575.499 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -87724,9 +87737,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 75.7 +49: Time: 0.001 0.001 95.1 49: (ns/day) (hour/ns) -49: Performance: 1809.810 0.013 +49: Performance: 2534.181 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: @@ -87764,9 +87777,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 95.2 49: (ns/day) (hour/ns) -49: Performance: 2346.893 0.010 +49: Performance: 2624.880 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: @@ -87804,12 +87817,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 95.2 49: (ns/day) (hour/ns) -49: Performance: 2292.740 0.010 +49: Performance: 2531.057 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (23 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (55 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -87850,9 +87863,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.9 +49: Time: 0.001 0.001 95.6 49: (ns/day) (hour/ns) -49: Performance: 2453.442 0.010 +49: Performance: 2744.140 0.009 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -87892,9 +87905,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.2 +49: Time: 0.005 0.005 99.4 49: (ns/day) (hour/ns) -49: Performance: 2314.273 0.010 +49: Performance: 304.754 0.079 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -87936,9 +87949,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.009 0.009 99.6 49: (ns/day) (hour/ns) -49: Performance: 2305.611 0.010 +49: Performance: 168.465 0.142 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -87980,9 +87993,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 95.7 49: (ns/day) (hour/ns) -49: Performance: 2285.087 0.011 +49: Performance: 2747.812 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: @@ -88024,9 +88037,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 96.1 49: (ns/day) (hour/ns) -49: Performance: 2432.133 0.010 +49: Performance: 2719.909 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: @@ -88068,12 +88081,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 95.7 49: (ns/day) (hour/ns) -49: Performance: 2429.256 0.010 +49: Performance: 2533.139 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (22 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (45 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -88121,9 +88134,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2434.055 0.010 +49: Performance: 2548.860 0.009 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -88170,9 +88183,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.5 49: (ns/day) (hour/ns) -49: Performance: 2293.594 0.010 +49: Performance: 2641.764 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -88221,9 +88234,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2321.249 0.010 +49: Performance: 2601.602 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -88272,9 +88285,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 95.4 49: (ns/day) (hour/ns) -49: Performance: 2309.068 0.010 +49: Performance: 2602.701 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: @@ -88323,9 +88336,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 95.2 49: (ns/day) (hour/ns) -49: Performance: 2309.068 0.010 +49: Performance: 2586.311 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: @@ -88374,12 +88387,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 95.2 49: (ns/day) (hour/ns) -49: Performance: 2343.322 0.010 +49: Performance: 2405.542 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (23 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (55 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: @@ -88420,9 +88433,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 92.9 +49: Time: 0.001 0.001 95.1 49: (ns/day) (hour/ns) -49: Performance: 2297.872 0.010 +49: Performance: 2762.598 0.009 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -88462,9 +88475,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.009 0.009 99.6 49: (ns/day) (hour/ns) -49: Performance: 2226.452 0.011 +49: Performance: 167.809 0.143 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -88506,9 +88519,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.005 0.005 99.3 49: (ns/day) (hour/ns) -49: Performance: 2232.908 0.011 +49: Performance: 300.151 0.080 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -88550,9 +88563,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.3 +49: Time: 0.007 0.007 99.4 49: (ns/day) (hour/ns) -49: Performance: 1769.269 0.014 +49: Performance: 214.670 0.112 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 49: @@ -88596,7 +88609,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 95.6 49: (ns/day) (hour/ns) -49: Performance: 2245.933 0.011 +49: Performance: 2614.853 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 49: @@ -88638,12 +88651,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.001 0.001 96.0 49: (ns/day) (hour/ns) -49: Performance: 2252.502 0.011 +49: Performance: 2303.887 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (23 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (41 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: @@ -88680,9 +88693,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 95.9 49: (ns/day) (hour/ns) -49: Performance: 2460.301 0.010 +49: Performance: 2730.760 0.009 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -88718,9 +88731,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 96.2 49: (ns/day) (hour/ns) -49: Performance: 2469.176 0.010 +49: Performance: 2073.576 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -88758,9 +88771,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.001 0.001 96.2 49: (ns/day) (hour/ns) -49: Performance: 2285.935 0.010 +49: Performance: 2455.398 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -88800,7 +88813,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 96.0 49: (ns/day) (hour/ns) -49: Performance: 2327.387 0.010 +49: Performance: 2602.701 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 49: @@ -88838,9 +88851,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 95.9 49: (ns/day) (hour/ns) -49: Performance: 2289.332 0.010 +49: Performance: 2581.976 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 49: @@ -88878,12 +88891,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 96.1 49: (ns/day) (hour/ns) -49: Performance: 2210.475 0.011 +49: Performance: 2595.027 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (23 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (25 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: @@ -88920,9 +88933,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.8 49: (ns/day) (hour/ns) -49: Performance: 2287.632 0.010 +49: Performance: 2725.926 0.009 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -88960,7 +88973,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 95.8 49: (ns/day) (hour/ns) -49: Performance: 2189.266 0.011 +49: Performance: 2557.324 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -88998,9 +89011,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 96.0 49: (ns/day) (hour/ns) -49: Performance: 2159.339 0.011 +49: Performance: 2508.385 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -89038,9 +89051,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 92.8 +49: Time: 0.001 0.001 96.3 49: (ns/day) (hour/ns) -49: Performance: 2092.593 0.011 +49: Performance: 2009.982 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 49: @@ -89078,9 +89091,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 95.9 49: (ns/day) (hour/ns) -49: Performance: 2144.307 0.011 +49: Performance: 2556.263 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 49: @@ -89118,12 +89131,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 93.8 +49: Time: 0.001 0.001 96.2 49: (ns/day) (hour/ns) -49: Performance: 2216.041 0.011 +49: Performance: 2149.544 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (24 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (27 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: @@ -89160,9 +89173,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 95.6 49: (ns/day) (hour/ns) -49: Performance: 2405.542 0.010 +49: Performance: 2703.200 0.009 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -89198,9 +89211,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.8 49: (ns/day) (hour/ns) -49: Performance: 2251.679 0.011 +49: Performance: 2534.181 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -89238,9 +89251,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 95.9 49: (ns/day) (hour/ns) -49: Performance: 2322.999 0.010 +49: Performance: 2525.869 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -89278,9 +89291,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 96.1 49: (ns/day) (hour/ns) -49: Performance: 2378.608 0.010 +49: Performance: 2523.799 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 49: @@ -89318,9 +89331,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 96.0 49: (ns/day) (hour/ns) -49: Performance: 2166.934 0.011 +49: Performance: 2544.648 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 49: @@ -89358,9 +89371,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 95.9 49: (ns/day) (hour/ns) -49: Performance: 2263.260 0.011 +49: Performance: 2510.429 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 (23 ms) @@ -89404,9 +89417,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 96.1 49: (ns/day) (hour/ns) -49: Performance: 2103.310 0.011 +49: Performance: 2309.934 0.010 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -89446,9 +89459,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.2 +49: Time: 0.001 0.001 97.8 49: (ns/day) (hour/ns) -49: Performance: 1936.076 0.012 +49: Performance: 2267.425 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -89490,9 +89503,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.7 +49: Time: 0.001 0.001 97.5 49: (ns/day) (hour/ns) -49: Performance: 2041.960 0.012 +49: Performance: 2265.757 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -89534,9 +89547,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.4 +49: Time: 0.001 0.001 97.6 49: (ns/day) (hour/ns) -49: Performance: 2033.199 0.012 +49: Performance: 2273.282 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 49: @@ -89578,9 +89591,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.5 +49: Time: 0.001 0.001 98.3 49: (ns/day) (hour/ns) -49: Performance: 2084.098 0.012 +49: Performance: 1405.886 0.017 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 49: @@ -89622,9 +89635,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.6 +49: Time: 0.001 0.001 98.3 49: (ns/day) (hour/ns) -49: Performance: 2000.193 0.012 +49: Performance: 1520.008 0.016 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 (23 ms) @@ -89668,9 +89681,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 96.3 49: (ns/day) (hour/ns) -49: Performance: 2524.833 0.010 +49: Performance: 1683.222 0.014 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -89710,9 +89723,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.9 49: (ns/day) (hour/ns) -49: Performance: 2186.934 0.011 +49: Performance: 2531.057 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -89754,9 +89767,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 95.8 49: (ns/day) (hour/ns) -49: Performance: 2140.582 0.011 +49: Performance: 2520.701 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -89798,9 +89811,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1778.462 0.013 +49: Performance: 1585.738 0.015 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 49: @@ -89842,9 +89855,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.9 +49: Time: 0.001 0.001 95.8 49: (ns/day) (hour/ns) -49: Performance: 2145.054 0.011 +49: Performance: 2385.054 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 49: @@ -89888,10 +89901,10 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 95.8 49: (ns/day) (hour/ns) -49: Performance: 2188.488 0.011 +49: Performance: 2477.119 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (23 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (24 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: @@ -89928,9 +89941,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.2 +49: Time: 0.001 0.001 97.3 49: (ns/day) (hour/ns) -49: Performance: 2069.397 0.012 +49: Performance: 2422.569 0.010 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -89966,9 +89979,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.3 +49: Time: 0.001 0.001 97.6 49: (ns/day) (hour/ns) -49: Performance: 1937.903 0.012 +49: Performance: 2291.888 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -90006,9 +90019,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.4 +49: Time: 0.001 0.001 97.5 49: (ns/day) (hour/ns) -49: Performance: 2031.858 0.012 +49: Performance: 2265.757 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -90048,7 +90061,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 97.5 49: (ns/day) (hour/ns) -49: Performance: 2028.513 0.012 +49: Performance: 2288.482 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 49: @@ -90086,9 +90099,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.0 +49: Time: 0.001 0.001 97.6 49: (ns/day) (hour/ns) -49: Performance: 2013.266 0.012 +49: Performance: 2274.121 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 49: @@ -90126,9 +90139,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.3 +49: Time: 0.001 0.001 97.6 49: (ns/day) (hour/ns) -49: Performance: 1986.647 0.012 +49: Performance: 2249.213 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (23 ms) @@ -90168,9 +90181,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.8 49: (ns/day) (hour/ns) -49: Performance: 2330.909 0.010 +49: Performance: 2642.897 0.009 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -90208,7 +90221,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 95.7 49: (ns/day) (hour/ns) -49: Performance: 2007.362 0.012 +49: Performance: 2544.648 0.009 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -90246,9 +90259,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 95.8 49: (ns/day) (hour/ns) -49: Performance: 2095.440 0.011 +49: Performance: 2439.839 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -90286,9 +90299,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 95.8 49: (ns/day) (hour/ns) -49: Performance: 2138.353 0.011 +49: Performance: 2514.528 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 49: @@ -90326,9 +90339,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 95.9 49: (ns/day) (hour/ns) -49: Performance: 2204.148 0.011 +49: Performance: 2427.342 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 49: @@ -90366,12 +90379,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.9 +49: Time: 0.001 0.001 96.2 49: (ns/day) (hour/ns) -49: Performance: 2176.888 0.011 +49: Performance: 2208.890 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (24 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (23 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: @@ -90408,9 +90421,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.2 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 2107.627 0.011 +49: Performance: 2117.043 0.011 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -90446,9 +90459,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 94.7 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 1951.408 0.012 +49: Performance: 2059.710 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -90486,9 +90499,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.3 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 2029.850 0.012 +49: Performance: 2141.326 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -90526,9 +90539,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.4 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 2027.178 0.012 +49: Performance: 2134.648 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 49: @@ -90566,9 +90579,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 90.3 49: (ns/day) (hour/ns) -49: Performance: 2064.542 0.012 +49: Performance: 2171.517 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 49: @@ -90606,9 +90619,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.4 +49: Time: 0.001 0.001 96.3 49: (ns/day) (hour/ns) -49: Performance: 2050.114 0.012 +49: Performance: 2318.628 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (23 ms) @@ -90648,9 +90661,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.2 +49: Time: 0.001 0.001 96.3 49: (ns/day) (hour/ns) -49: Performance: 1910.854 0.013 +49: Performance: 2151.045 0.011 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -90686,9 +90699,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.3 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1710.326 0.014 +49: Performance: 2077.071 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -90726,9 +90739,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.4 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 1798.188 0.013 +49: Performance: 2037.907 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -90766,9 +90779,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.3 +49: Time: 0.001 0.001 96.4 49: (ns/day) (hour/ns) -49: Performance: 1810.874 0.013 +49: Performance: 2033.199 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 49: @@ -90806,9 +90819,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.001 0.001 96.4 49: (ns/day) (hour/ns) -49: Performance: 1694.333 0.014 +49: Performance: 2052.163 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 49: @@ -90848,11 +90861,11 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 1795.568 0.013 +49: Performance: 2008.016 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 (25 ms) -49: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (434 ms total) +49: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (651 ms total) 49: 49: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -90903,9 +90916,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2359.477 0.010 +49: Performance: 2331.792 0.010 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -90953,9 +90966,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.8 49: (ns/day) (hour/ns) -49: Performance: 2220.834 0.011 +49: Performance: 2280.012 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -91005,9 +91018,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 95.8 49: (ns/day) (hour/ns) -49: Performance: 2202.572 0.011 +49: Performance: 2317.755 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -91057,9 +91070,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.7 49: (ns/day) (hour/ns) -49: Performance: 2027.845 0.012 +49: Performance: 2297.872 0.010 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: @@ -91109,9 +91122,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 95.9 49: (ns/day) (hour/ns) -49: Performance: 2222.436 0.011 +49: Performance: 2193.163 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: @@ -91161,12 +91174,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 95.7 49: (ns/day) (hour/ns) -49: Performance: 2232.099 0.011 +49: Performance: 2274.961 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (1439 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (1492 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -91215,9 +91228,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.2 +49: Time: 0.001 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2270.768 0.011 +49: Performance: 2292.740 0.010 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -91265,9 +91278,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.002 0.002 98.1 49: (ns/day) (hour/ns) -49: Performance: 2145.054 0.011 +49: Performance: 674.690 0.036 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -91317,9 +91330,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.4 49: (ns/day) (hour/ns) -49: Performance: 2070.092 0.012 +49: Performance: 2263.260 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -91369,9 +91382,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 93.6 +49: Time: 0.001 0.001 95.5 49: (ns/day) (hour/ns) -49: Performance: 2108.348 0.011 +49: Performance: 2268.260 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: @@ -91421,9 +91434,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.009 0.009 99.4 49: (ns/day) (hour/ns) -49: Performance: 2178.428 0.011 +49: Performance: 167.339 0.143 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: @@ -91473,12 +91486,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 95.5 49: (ns/day) (hour/ns) -49: Performance: 2060.399 0.012 +49: Performance: 2193.944 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (1406 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (1560 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -91523,9 +91536,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 95.2 49: (ns/day) (hour/ns) -49: Performance: 2284.239 0.011 +49: Performance: 2406.482 0.010 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -91569,9 +91582,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.5 49: (ns/day) (hour/ns) -49: Performance: 2131.693 0.011 +49: Performance: 2266.591 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -91617,9 +91630,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.5 49: (ns/day) (hour/ns) -49: Performance: 2169.223 0.011 +49: Performance: 2225.648 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -91665,9 +91678,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 95.7 49: (ns/day) (hour/ns) -49: Performance: 2164.650 0.011 +49: Performance: 2177.658 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: @@ -91713,9 +91726,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 95.7 49: (ns/day) (hour/ns) -49: Performance: 2133.170 0.011 +49: Performance: 2276.642 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: @@ -91761,12 +91774,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.7 49: (ns/day) (hour/ns) -49: Performance: 2067.313 0.012 +49: Performance: 2170.752 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (1440 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (1499 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -91811,9 +91824,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 94.8 +49: Time: 0.001 0.001 95.5 49: (ns/day) (hour/ns) -49: Performance: 2205.726 0.011 +49: Performance: 2340.651 0.010 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -91857,9 +91870,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.001 0.001 95.4 49: (ns/day) (hour/ns) -49: Performance: 2033.199 0.012 +49: Performance: 2111.238 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -91905,9 +91918,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.1 +49: Time: 0.001 0.001 97.6 49: (ns/day) (hour/ns) -49: Performance: 2092.593 0.011 +49: Performance: 1027.965 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -91953,9 +91966,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.001 0.001 95.5 49: (ns/day) (hour/ns) -49: Performance: 2094.016 0.011 +49: Performance: 2191.602 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: @@ -92001,9 +92014,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.002 0.002 98.0 49: (ns/day) (hour/ns) -49: Performance: 2104.028 0.011 +49: Performance: 800.909 0.030 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: @@ -92049,12 +92062,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 2109.792 0.011 +49: Performance: 2163.130 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (1445 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (1500 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -92099,9 +92112,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.9 +49: Time: 0.001 0.001 96.0 49: (ns/day) (hour/ns) -49: Performance: 2077.071 0.012 +49: Performance: 2183.059 0.011 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -92145,9 +92158,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.2 +49: Time: 0.001 0.001 95.9 49: (ns/day) (hour/ns) -49: Performance: 1943.405 0.012 +49: Performance: 2048.070 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -92193,9 +92206,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.002 0.002 98.2 49: (ns/day) (hour/ns) -49: Performance: 2048.751 0.012 +49: Performance: 789.820 0.030 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -92243,7 +92256,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 96.0 49: (ns/day) (hour/ns) -49: Performance: 2011.951 0.012 +49: Performance: 2089.045 0.011 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: @@ -92289,9 +92302,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 96.1 49: (ns/day) (hour/ns) -49: Performance: 2019.205 0.012 +49: Performance: 1956.365 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: @@ -92337,12 +92350,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 93.9 +49: Time: 0.001 0.001 96.1 49: (ns/day) (hour/ns) -49: Performance: 2019.867 0.012 +49: Performance: 2074.274 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (1415 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (1481 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -92387,9 +92400,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 95.6 49: (ns/day) (hour/ns) -49: Performance: 2041.284 0.012 +49: Performance: 2162.371 0.011 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -92433,9 +92446,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 95.9 49: (ns/day) (hour/ns) -49: Performance: 1955.744 0.012 +49: Performance: 1948.322 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -92481,9 +92494,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.001 0.001 95.9 49: (ns/day) (hour/ns) -49: Performance: 1942.792 0.012 +49: Performance: 2059.022 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -92529,9 +92542,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 95.9 49: (ns/day) (hour/ns) -49: Performance: 1978.989 0.012 +49: Performance: 2045.350 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: @@ -92577,9 +92590,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.2 +49: Time: 0.001 0.001 95.7 49: (ns/day) (hour/ns) -49: Performance: 2025.179 0.012 +49: Performance: 2042.637 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: @@ -92625,12 +92638,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 95.8 49: (ns/day) (hour/ns) -49: Performance: 1889.173 0.013 +49: Performance: 2027.178 0.012 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (1451 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (1543 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -92679,9 +92692,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.5 +49: Time: 0.002 0.002 98.6 49: (ns/day) (hour/ns) -49: Performance: 1935.468 0.012 +49: Performance: 956.762 0.025 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -92729,9 +92742,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.4 +49: Time: 0.001 0.001 97.5 49: (ns/day) (hour/ns) -49: Performance: 1861.769 0.013 +49: Performance: 1836.243 0.013 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -92781,9 +92794,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.3 +49: Time: 0.002 0.002 98.5 49: (ns/day) (hour/ns) -49: Performance: 1867.979 0.013 +49: Performance: 917.711 0.026 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -92835,7 +92848,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 97.5 49: (ns/day) (hour/ns) -49: Performance: 1792.433 0.013 +49: Performance: 1825.361 0.013 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: @@ -92885,9 +92898,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 98.5 +49: Time: 0.001 0.001 97.5 49: (ns/day) (hour/ns) -49: Performance: 951.002 0.025 +49: Performance: 1841.182 0.013 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: @@ -92937,12 +92950,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.5 +49: Time: 0.001 0.001 97.8 49: (ns/day) (hour/ns) -49: Performance: 1882.247 0.013 +49: Performance: 1854.483 0.013 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (1467 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (1476 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -92987,9 +93000,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.5 +49: Time: 0.001 0.001 97.6 49: (ns/day) (hour/ns) -49: Performance: 1826.443 0.013 +49: Performance: 1881.672 0.013 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -93035,7 +93048,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 97.5 49: (ns/day) (hour/ns) -49: Performance: 1851.140 0.013 +49: Performance: 1718.916 0.014 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -93081,9 +93094,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.4 +49: Time: 0.001 0.001 97.6 49: (ns/day) (hour/ns) -49: Performance: 1771.813 0.014 +49: Performance: 1785.679 0.013 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -93129,9 +93142,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.3 +49: Time: 0.001 0.001 97.6 49: (ns/day) (hour/ns) -49: Performance: 1848.918 0.013 +49: Performance: 1796.091 0.013 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: @@ -93177,9 +93190,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 97.4 +49: Time: 0.001 0.001 97.6 49: (ns/day) (hour/ns) -49: Performance: 818.031 0.029 +49: Performance: 1772.323 0.014 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: @@ -93225,18 +93238,18 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.3 +49: Time: 0.001 0.001 97.6 49: (ns/day) (hour/ns) -49: Performance: 1856.719 0.013 +49: Performance: 1737.336 0.014 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (1467 ms) -49: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (11530 ms total) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (1457 ms) +49: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (12008 ms total) 49: 49: [----------] Global test environment tear-down -49: [==========] 27 tests from 3 test cases ran. (12034 ms total) +49: [==========] 27 tests from 3 test cases ran. (12762 ms total) 49: [ PASSED ] 27 tests. -49/54 Test #49: MdrunMpiCoordinationTestsOneRank .... Passed 12.06 sec +49/54 Test #49: MdrunMpiCoordinationTestsOneRank .... Passed 12.80 sec test 50 Start 50: MdrunMpiCoordinationTestsTwoRanks @@ -93289,18 +93302,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.9%. -50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.9%. +50: Average load imbalance: 2.6%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.2%. 50: 50: -50: NOTE: 40 % of the run time was spent communicating energies, +50: NOTE: 41 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 195.1 +50: Time: 0.003 0.002 195.5 50: (ns/day) (hour/ns) -50: Performance: 979.038 0.025 +50: Performance: 935.621 0.026 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -93344,18 +93357,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.3%. +50: Average load imbalance: 2.5%. 50: The balanceable part of the MD step is 46%, load imbalance is computed from this. 50: Part of the total run time spent waiting due to load imbalance: 1.1%. 50: 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 191.1 +50: Time: 0.001 0.001 191.6 50: (ns/day) (hour/ns) -50: Performance: 1922.182 0.012 +50: Performance: 1919.487 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -93401,18 +93414,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.9%. -50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.9%. +50: Average load imbalance: 3.6%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.6%. 50: 50: 50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.8 +50: Time: 0.001 0.001 191.4 50: (ns/day) (hour/ns) -50: Performance: 2110.154 0.011 +50: Performance: 2098.295 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -93458,8 +93471,8 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.6%. -50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Average load imbalance: 2.5%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. 50: Part of the total run time spent waiting due to load imbalance: 1.2%. 50: 50: @@ -93467,9 +93480,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 191.1 +50: Time: 0.001 0.001 190.9 50: (ns/day) (hour/ns) -50: Performance: 2101.516 0.011 +50: Performance: 2126.543 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: @@ -93515,18 +93528,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.2%. -50: The balanceable part of the MD step is 48%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.0%. +50: Average load imbalance: 2.5%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.2%. 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.5 +50: Time: 0.001 0.001 190.9 50: (ns/day) (hour/ns) -50: Performance: 2118.863 0.011 +50: Performance: 2143.934 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: @@ -93572,22 +93585,22 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.1%. +50: Average load imbalance: 2.2%. 50: The balanceable part of the MD step is 47%, load imbalance is computed from this. 50: Part of the total run time spent waiting due to load imbalance: 1.0%. 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.9 +50: Time: 0.001 0.001 191.1 50: (ns/day) (hour/ns) -50: Performance: 2010.310 0.012 +50: Performance: 2144.680 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file -50: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (264 ms) -50: [----------] 1 test from BasicPropagators/PeriodicActionsTest (264 ms total) +50: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (673 ms) +50: [----------] 1 test from BasicPropagators/PeriodicActionsTest (673 ms total) 50: 50: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -93633,19 +93646,29 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.0%. -50: The balanceable part of the MD step is 45%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.9%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 37.4%. +50: The balanceable part of the MD step is 34%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 12.7%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: +50: NOTE: 12.7 % of the available CPU time was lost due to load imbalance +50: in the domain decomposition. +50: You can consider manually changing the decomposition (option -dd); +50: e.g. by using fewer domains along the box dimension in which there is +50: considerable inhomogeneity in the simulated system. 50: +50: NOTE: 19 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 16 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.7 +50: Time: 0.976 0.504 193.7 50: (ns/day) (hour/ns) -50: Performance: 1999.868 0.012 +50: Performance: 2.915 8.234 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -93688,19 +93711,29 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 0.9%. -50: The balanceable part of the MD step is 45%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.4%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 39.3%. +50: The balanceable part of the MD step is 34%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 13.5%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: +50: NOTE: 13.5 % of the available CPU time was lost due to load imbalance +50: in the domain decomposition. +50: You can consider manually changing the decomposition (option -dd); +50: e.g. by using fewer domains along the box dimension in which there is +50: considerable inhomogeneity in the simulated system. 50: +50: NOTE: 19 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 16 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 191.0 +50: Time: 0.992 0.512 193.8 50: (ns/day) (hour/ns) -50: Performance: 1875.656 0.013 +50: Performance: 2.869 8.365 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -93745,19 +93778,29 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.8%. -50: The balanceable part of the MD step is 46%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 37.4%. +50: The balanceable part of the MD step is 34%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 12.8%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: +50: NOTE: 12.8 % of the available CPU time was lost due to load imbalance +50: in the domain decomposition. +50: You can consider manually changing the decomposition (option -dd); +50: e.g. by using fewer domains along the box dimension in which there is +50: considerable inhomogeneity in the simulated system. 50: +50: NOTE: 19 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 16 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.0 +50: Time: 0.976 0.504 193.7 50: (ns/day) (hour/ns) -50: Performance: 2017.221 0.012 +50: Performance: 2.914 8.235 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -93803,18 +93846,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.6%. +50: Average load imbalance: 1.5%. 50: The balanceable part of the MD step is 46%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: Part of the total run time spent waiting due to load imbalance: 0.7%. 50: 50: 50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.4 +50: Time: 0.001 0.001 191.2 50: (ns/day) (hour/ns) -50: Performance: 1957.608 0.012 +50: Performance: 2106.906 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: @@ -93859,19 +93902,24 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.7%. -50: The balanceable part of the MD step is 46%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 7.2%. +50: The balanceable part of the MD step is 43%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 3.1%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 10 % of the run time was spent in domain decomposition, +50: 5 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) +50: +50: NOTE: 26 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.6 +50: Time: 0.001 0.001 191.6 50: (ns/day) (hour/ns) -50: Performance: 1971.390 0.012 +50: Performance: 1885.415 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: @@ -93917,21 +93965,21 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.0%. -50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Average load imbalance: 1.9%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. 50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.5 +50: Time: 0.001 0.001 191.0 50: (ns/day) (hour/ns) -50: Performance: 2019.867 0.012 +50: Performance: 2048.410 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (260 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (4032 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -93976,18 +94024,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.7%. +50: Average load imbalance: 1.5%. 50: The balanceable part of the MD step is 46%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: Part of the total run time spent waiting due to load imbalance: 0.7%. 50: 50: 50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.4 +50: Time: 0.001 0.001 190.1 50: (ns/day) (hour/ns) -50: Performance: 1902.592 0.013 +50: Performance: 2000.842 0.012 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -94031,18 +94079,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.3%. -50: The balanceable part of the MD step is 45%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.0%. +50: Average load imbalance: 1.9%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: 50: 50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.3 +50: Time: 0.001 0.001 189.9 50: (ns/day) (hour/ns) -50: Performance: 1884.550 0.013 +50: Performance: 2017.221 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -94088,9 +94136,9 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.1%. -50: The balanceable part of the MD step is 46%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.0%. +50: Average load imbalance: 1.6%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.7%. 50: 50: 50: NOTE: 30 % of the run time was spent communicating energies, @@ -94099,7 +94147,7 @@ 50: Core t (s) Wall t (s) (%) 50: Time: 0.001 0.001 189.9 50: (ns/day) (hour/ns) -50: Performance: 1924.885 0.012 +50: Performance: 2083.393 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -94145,18 +94193,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 0.4%. -50: The balanceable part of the MD step is 45%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.2%. +50: Average load imbalance: 1.2%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.6%. 50: 50: -50: NOTE: 28 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.0 +50: Time: 0.001 0.001 189.5 50: (ns/day) (hour/ns) -50: Performance: 1873.090 0.013 +50: Performance: 2056.960 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: @@ -94202,18 +94250,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.3%. -50: The balanceable part of the MD step is 45%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.6%. +50: Average load imbalance: 1.6%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.8%. 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.0 +50: Time: 0.001 0.001 190.3 50: (ns/day) (hour/ns) -50: Performance: 1817.821 0.013 +50: Performance: 2046.369 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: @@ -94259,21 +94307,21 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.2%. +50: Average load imbalance: 0.8%. 50: The balanceable part of the MD step is 46%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.0%. +50: Part of the total run time spent waiting due to load imbalance: 0.4%. 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.6 +50: Time: 0.001 0.001 189.9 50: (ns/day) (hour/ns) -50: Performance: 1967.298 0.012 +50: Performance: 2031.858 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (264 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (230 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -94318,18 +94366,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.7%. +50: Average load imbalance: 1.1%. 50: The balanceable part of the MD step is 45%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: Part of the total run time spent waiting due to load imbalance: 0.5%. 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.4 +50: Time: 0.001 0.001 189.9 50: (ns/day) (hour/ns) -50: Performance: 1931.826 0.012 +50: Performance: 1994.042 0.012 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -94373,18 +94421,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.3%. +50: Average load imbalance: 2.0%. 50: The balanceable part of the MD step is 46%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.6%. +50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.9 +50: Time: 0.001 0.001 189.3 50: (ns/day) (hour/ns) -50: Performance: 1887.148 0.013 +50: Performance: 2035.551 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -94430,18 +94478,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.8%. +50: Average load imbalance: 1.5%. 50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: Part of the total run time spent waiting due to load imbalance: 0.7%. 50: 50: 50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.0 +50: Time: 0.001 0.001 189.9 50: (ns/day) (hour/ns) -50: Performance: 1894.402 0.013 +50: Performance: 2007.035 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -94487,18 +94535,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.7%. +50: Average load imbalance: 1.8%. 50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: 50: 50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.6 +50: Time: 0.001 0.001 189.8 50: (ns/day) (hour/ns) -50: Performance: 1928.198 0.012 +50: Performance: 2007.035 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: @@ -94544,18 +94592,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.9%. +50: Average load imbalance: 1.0%. 50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.9%. +50: Part of the total run time spent waiting due to load imbalance: 0.5%. 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.0 +50: Time: 0.001 0.001 189.9 50: (ns/day) (hour/ns) -50: Performance: 1923.082 0.012 +50: Performance: 2056.616 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: @@ -94601,21 +94649,21 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.5%. -50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.7%. +50: Average load imbalance: 1.2%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.6%. 50: 50: 50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.4 +50: Time: 0.001 0.001 190.3 50: (ns/day) (hour/ns) -50: Performance: 1942.180 0.012 +50: Performance: 1931.523 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (276 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (207 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -94653,13 +94701,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 24 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.8 +50: Time: 0.988 0.526 187.8 50: (ns/day) (hour/ns) -50: Performance: 2050.114 0.012 +50: Performance: 2.793 8.592 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -94696,13 +94744,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 25 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.8 +50: Time: 0.912 0.502 181.7 50: (ns/day) (hour/ns) -50: Performance: 2118.499 0.011 +50: Performance: 2.927 8.200 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -94745,9 +94793,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.1 +50: Time: 0.001 0.001 190.3 50: (ns/day) (hour/ns) -50: Performance: 2087.629 0.011 +50: Performance: 2254.976 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -94790,9 +94838,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.6 +50: Time: 0.001 0.001 190.5 50: (ns/day) (hour/ns) -50: Performance: 2115.589 0.011 +50: Performance: 2068.354 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: @@ -94831,13 +94879,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 21 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.752 0.392 191.8 +50: Time: 0.001 0.001 190.0 50: (ns/day) (hour/ns) -50: Performance: 3.747 6.404 +50: Performance: 2250.856 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: @@ -94876,16 +94924,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.7 +50: Time: 0.001 0.001 190.1 50: (ns/day) (hour/ns) -50: Performance: 2245.523 0.011 +50: Performance: 2282.547 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (1437 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (3482 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -94923,13 +94971,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.2 +50: Time: 0.001 0.001 189.9 50: (ns/day) (hour/ns) -50: Performance: 2142.070 0.011 +50: Performance: 2031.858 0.012 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -94966,13 +95014,17 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 27 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) +50: +50: NOTE: 14 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 188.3 +50: Time: 0.341 0.171 199.9 50: (ns/day) (hour/ns) -50: Performance: 2147.297 0.011 +50: Performance: 8.606 2.789 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95015,9 +95067,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.3 +50: Time: 0.001 0.001 188.8 50: (ns/day) (hour/ns) -50: Performance: 2210.475 0.011 +50: Performance: 2120.686 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95060,9 +95112,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.0 +50: Time: 0.001 0.001 189.2 50: (ns/day) (hour/ns) -50: Performance: 2134.278 0.011 +50: Performance: 2202.966 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: @@ -95101,13 +95153,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 21 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.0 +50: Time: 0.752 0.392 191.8 50: (ns/day) (hour/ns) -50: Performance: 2076.721 0.012 +50: Performance: 3.747 6.404 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: @@ -95146,16 +95198,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 21 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.5 +50: Time: 0.752 0.392 191.9 50: (ns/day) (hour/ns) -50: Performance: 2163.890 0.011 +50: Performance: 3.747 6.405 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (273 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (3430 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -95193,13 +95245,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 21 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.3 +50: Time: 0.752 0.392 191.8 50: (ns/day) (hour/ns) -50: Performance: 2111.600 0.011 +50: Performance: 3.747 6.404 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -95236,13 +95288,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 21 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.4 +50: Time: 0.752 0.392 191.8 50: (ns/day) (hour/ns) -50: Performance: 2179.969 0.011 +50: Performance: 3.748 6.403 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95281,13 +95333,17 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 75 % of the run time was spent in domain decomposition, +50: 1 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) +50: +50: NOTE: 8 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.6 +50: Time: 0.006 0.003 197.4 50: (ns/day) (hour/ns) -50: Performance: 2184.995 0.011 +50: Performance: 489.577 0.049 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95330,9 +95386,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.5 +50: Time: 0.001 0.001 189.1 50: (ns/day) (hour/ns) -50: Performance: 2102.951 0.011 +50: Performance: 2186.934 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: @@ -95375,9 +95431,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.5 +50: Time: 0.001 0.001 189.2 50: (ns/day) (hour/ns) -50: Performance: 2076.721 0.012 +50: Performance: 2199.427 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: @@ -95416,16 +95472,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.1 +50: Time: 0.001 0.001 188.6 50: (ns/day) (hour/ns) -50: Performance: 2064.888 0.012 +50: Performance: 2163.890 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (190 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (2898 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -95467,13 +95523,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 21 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.8 +50: Time: 0.752 0.392 191.8 50: (ns/day) (hour/ns) -50: Performance: 2140.582 0.011 +50: Performance: 3.747 6.404 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -95514,13 +95570,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 19 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.8 +50: Time: 0.732 0.366 200.0 50: (ns/day) (hour/ns) -50: Performance: 2132.431 0.011 +50: Performance: 4.012 5.982 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95567,9 +95623,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.2 +50: Time: 0.001 0.001 190.2 50: (ns/day) (hour/ns) -50: Performance: 2124.709 0.011 +50: Performance: 2243.071 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95612,13 +95668,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.2 +50: Time: 0.001 0.001 189.8 50: (ns/day) (hour/ns) -50: Performance: 2172.283 0.011 +50: Performance: 2220.834 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: @@ -95667,7 +95723,7 @@ 50: Core t (s) Wall t (s) (%) 50: Time: 0.001 0.001 189.8 50: (ns/day) (hour/ns) -50: Performance: 2119.227 0.011 +50: Performance: 2222.036 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: @@ -95710,16 +95766,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.1 +50: Time: 0.001 0.001 190.4 50: (ns/day) (hour/ns) -50: Performance: 2188.877 0.011 +50: Performance: 2178.813 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (283 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (2165 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -95772,9 +95828,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.4 +50: Time: 0.001 0.001 189.1 50: (ns/day) (hour/ns) -50: Performance: 2022.519 0.012 +50: Performance: 2119.227 0.011 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -95826,9 +95882,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.5 +50: Time: 0.001 0.001 188.7 50: (ns/day) (hour/ns) -50: Performance: 2056.960 0.012 +50: Performance: 2219.634 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95882,9 +95938,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 188.8 +50: Time: 0.001 0.001 189.1 50: (ns/day) (hour/ns) -50: Performance: 2069.744 0.012 +50: Performance: 2163.510 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95938,9 +95994,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.1 +50: Time: 0.001 0.001 189.7 50: (ns/day) (hour/ns) -50: Performance: 2109.431 0.011 +50: Performance: 2193.163 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: @@ -95994,9 +96050,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.0 +50: Time: 0.001 0.001 189.1 50: (ns/day) (hour/ns) -50: Performance: 2063.850 0.012 +50: Performance: 2167.315 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: @@ -96046,16 +96102,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 188.3 +50: Time: 0.001 0.001 189.5 50: (ns/day) (hour/ns) -50: Performance: 2040.269 0.012 +50: Performance: 2153.301 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (213 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (267 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: @@ -96101,9 +96157,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 188.8 +50: Time: 0.001 0.001 189.3 50: (ns/day) (hour/ns) -50: Performance: 2023.183 0.012 +50: Performance: 2129.851 0.011 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -96148,9 +96204,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.0 +50: Time: 0.001 0.001 189.3 50: (ns/day) (hour/ns) -50: Performance: 2026.511 0.012 +50: Performance: 2193.163 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -96193,13 +96249,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 188.4 +50: Time: 0.001 0.001 189.3 50: (ns/day) (hour/ns) -50: Performance: 2050.797 0.012 +50: Performance: 2131.693 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -96246,9 +96302,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 188.7 +50: Time: 0.001 0.001 188.9 50: (ns/day) (hour/ns) -50: Performance: 2009.982 0.012 +50: Performance: 2144.307 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 50: @@ -96291,13 +96347,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 188.7 +50: Time: 0.001 0.001 189.2 50: (ns/day) (hour/ns) -50: Performance: 2038.582 0.012 +50: Performance: 2139.838 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 50: @@ -96340,16 +96396,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 21 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 1.504 0.768 195.7 +50: Time: 0.001 0.001 189.0 50: (ns/day) (hour/ns) -50: Performance: 1.912 12.555 +50: Performance: 2139.095 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (1733 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (273 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: @@ -96393,7 +96449,7 @@ 50: Core t (s) Wall t (s) (%) 50: Time: 0.001 0.001 190.3 50: (ns/day) (hour/ns) -50: Performance: 2105.466 0.011 +50: Performance: 2168.460 0.011 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -96436,7 +96492,7 @@ 50: Core t (s) Wall t (s) (%) 50: Time: 0.001 0.001 190.4 50: (ns/day) (hour/ns) -50: Performance: 2099.010 0.011 +50: Performance: 2170.369 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -96479,9 +96535,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.8 +50: Time: 0.001 0.001 190.6 50: (ns/day) (hour/ns) -50: Performance: 2162.371 0.011 +50: Performance: 2138.724 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -96524,9 +96580,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.0 +50: Time: 0.001 0.001 190.2 50: (ns/day) (hour/ns) -50: Performance: 2099.367 0.011 +50: Performance: 2148.794 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 50: @@ -96569,9 +96625,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.4 +50: Time: 0.001 0.001 190.8 50: (ns/day) (hour/ns) -50: Performance: 2131.325 0.011 +50: Performance: 2176.888 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 50: @@ -96614,12 +96670,12 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.4 +50: Time: 0.001 0.001 190.2 50: (ns/day) (hour/ns) -50: Performance: 2082.689 0.012 +50: Performance: 2198.642 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (885 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (251 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: @@ -96657,13 +96713,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.4 +50: Time: 0.001 0.001 189.7 50: (ns/day) (hour/ns) -50: Performance: 2010.966 0.012 +50: Performance: 2074.973 0.012 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -96704,9 +96760,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.7 +50: Time: 0.001 0.001 189.3 50: (ns/day) (hour/ns) -50: Performance: 2076.721 0.012 +50: Performance: 2125.442 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -96745,13 +96801,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.5 +50: Time: 0.001 0.001 190.1 50: (ns/day) (hour/ns) -50: Performance: 1944.018 0.012 +50: Performance: 2124.343 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -96790,13 +96846,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 21 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.752 0.392 191.8 +50: Time: 0.001 0.001 190.2 50: (ns/day) (hour/ns) -50: Performance: 3.747 6.405 +50: Performance: 2114.136 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 50: @@ -96835,13 +96891,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.5 +50: Time: 0.001 0.001 190.3 50: (ns/day) (hour/ns) -50: Performance: 2083.393 0.012 +50: Performance: 2139.466 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 50: @@ -96880,16 +96936,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.8 +50: Time: 0.001 0.001 189.5 50: (ns/day) (hour/ns) -50: Performance: 2085.862 0.012 +50: Performance: 2115.952 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (1290 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (238 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: @@ -96927,13 +96983,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) 50: Time: 0.001 0.001 189.3 50: (ns/day) (hour/ns) -50: Performance: 2071.136 0.012 +50: Performance: 2065.580 0.012 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -96970,13 +97026,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.9 +50: Time: 0.001 0.001 189.2 50: (ns/day) (hour/ns) -50: Performance: 2008.016 0.012 +50: Performance: 2139.466 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -97015,13 +97071,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) 50: Time: 0.001 0.001 189.4 50: (ns/day) (hour/ns) -50: Performance: 2091.527 0.011 +50: Performance: 2114.862 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -97060,13 +97116,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.4 +50: Time: 0.001 0.001 189.5 50: (ns/day) (hour/ns) -50: Performance: 2087.629 0.011 +50: Performance: 2108.709 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 50: @@ -97109,9 +97165,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.0 +50: Time: 0.001 0.001 189.8 50: (ns/day) (hour/ns) -50: Performance: 2134.648 0.011 +50: Performance: 2110.877 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 50: @@ -97150,16 +97206,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 188.4 +50: Time: 0.001 0.001 188.8 50: (ns/day) (hour/ns) -50: Performance: 2052.847 0.012 +50: Performance: 2125.075 0.011 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 (200 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 (246 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_input.mdp]: @@ -97204,15 +97260,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.6%. -50: The balanceable part of the MD step is 54%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.4%. +50: Average load imbalance: 1.8%. +50: The balanceable part of the MD step is 53%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.0%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.2 +50: Time: 0.002 0.001 190.0 50: (ns/day) (hour/ns) -50: Performance: 1506.626 0.016 +50: Performance: 1509.949 0.016 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -97256,15 +97312,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.4%. -50: The balanceable part of the MD step is 54%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.3%. +50: Average load imbalance: 2.2%. +50: The balanceable part of the MD step is 53%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.2%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.8 +50: Time: 0.002 0.001 189.6 50: (ns/day) (hour/ns) -50: Performance: 1526.222 0.016 +50: Performance: 1498.199 0.016 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -97310,15 +97366,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.7%. -50: The balanceable part of the MD step is 54%, load imbalance is computed from this. +50: Average load imbalance: 1.6%. +50: The balanceable part of the MD step is 55%, load imbalance is computed from this. 50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.8 +50: Time: 0.002 0.001 189.9 50: (ns/day) (hour/ns) -50: Performance: 1514.031 0.016 +50: Performance: 1534.203 0.016 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -97364,15 +97420,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.8%. -50: The balanceable part of the MD step is 55%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.0%. +50: Average load imbalance: 1.0%. +50: The balanceable part of the MD step is 57%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.6%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.9 +50: Time: 0.002 0.001 189.6 50: (ns/day) (hour/ns) -50: Performance: 1513.473 0.016 +50: Performance: 1543.815 0.016 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 50: @@ -97418,15 +97474,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.4%. -50: The balanceable part of the MD step is 55%, load imbalance is computed from this. +50: Average load imbalance: 1.3%. +50: The balanceable part of the MD step is 56%, load imbalance is computed from this. 50: Part of the total run time spent waiting due to load imbalance: 0.7%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.7 +50: Time: 0.002 0.001 189.9 50: (ns/day) (hour/ns) -50: Performance: 1530.582 0.016 +50: Performance: 1571.179 0.015 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 50: @@ -97472,18 +97528,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.4%. -50: The balanceable part of the MD step is 55%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.3%. +50: Average load imbalance: 1.6%. +50: The balanceable part of the MD step is 56%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.4 +50: Time: 0.002 0.001 189.9 50: (ns/day) (hour/ns) -50: Performance: 1542.848 0.016 +50: Performance: 1548.082 0.016 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 (402 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 (312 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_input.mdp]: @@ -97528,18 +97584,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.5%. -50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.7%. +50: Average load imbalance: 1.8%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: 50: 50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.2 +50: Time: 0.002 0.001 190.6 50: (ns/day) (hour/ns) -50: Performance: 1811.140 0.013 +50: Performance: 1864.022 0.013 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -97583,18 +97639,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.3%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.7%. +50: Average load imbalance: 1.0%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.5%. 50: 50: 50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.2 +50: Time: 0.001 0.001 190.2 50: (ns/day) (hour/ns) -50: Performance: 1835.422 0.013 +50: Performance: 1891.203 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -97640,18 +97696,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.4%. -50: The balanceable part of the MD step is 50%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.7%. +50: Average load imbalance: 0.9%. +50: The balanceable part of the MD step is 49%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.4%. 50: 50: 50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.5 +50: Time: 0.001 0.001 190.2 50: (ns/day) (hour/ns) -50: Performance: 1879.376 0.013 +50: Performance: 1871.383 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -97699,16 +97755,16 @@ 50: DLB was off during the run due to low measured imbalance. 50: Average load imbalance: 1.5%. 50: The balanceable part of the MD step is 50%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: Part of the total run time spent waiting due to load imbalance: 0.7%. 50: 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.5 +50: Time: 0.002 0.001 190.7 50: (ns/day) (hour/ns) -50: Performance: 1866.564 0.013 +50: Performance: 1861.488 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 50: @@ -97754,18 +97810,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.1%. -50: The balanceable part of the MD step is 50%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.6%. +50: Average load imbalance: 1.0%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.5%. 50: 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.4 +50: Time: 0.001 0.001 190.2 50: (ns/day) (hour/ns) -50: Performance: 1842.283 0.013 +50: Performance: 1896.735 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 50: @@ -97811,21 +97867,21 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 0.9%. -50: The balanceable part of the MD step is 48%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.4%. +50: Average load imbalance: 1.4%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.7%. 50: 50: 50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.8 +50: Time: 0.001 0.001 189.8 50: (ns/day) (hour/ns) -50: Performance: 1824.010 0.013 +50: Performance: 1864.586 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (226 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (320 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: @@ -97864,9 +97920,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 188.6 +50: Time: 0.002 0.001 188.9 50: (ns/day) (hour/ns) -50: Performance: 1545.558 0.016 +50: Performance: 1639.764 0.015 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -97904,9 +97960,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 188.9 +50: Time: 0.002 0.001 189.3 50: (ns/day) (hour/ns) -50: Performance: 1562.809 0.015 +50: Performance: 1683.222 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -97946,9 +98002,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.0 +50: Time: 0.002 0.001 188.7 50: (ns/day) (hour/ns) -50: Performance: 1568.379 0.015 +50: Performance: 1616.317 0.015 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -97990,7 +98046,7 @@ 50: Core t (s) Wall t (s) (%) 50: Time: 0.002 0.001 188.8 50: (ns/day) (hour/ns) -50: Performance: 1594.563 0.015 +50: Performance: 1636.715 0.015 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 50: @@ -98032,7 +98088,7 @@ 50: Core t (s) Wall t (s) (%) 50: Time: 0.002 0.001 188.7 50: (ns/day) (hour/ns) -50: Performance: 1577.617 0.015 +50: Performance: 1620.356 0.015 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 50: @@ -98072,12 +98128,12 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.0 +50: Time: 0.002 0.001 189.1 50: (ns/day) (hour/ns) -50: Performance: 1515.894 0.016 +50: Performance: 1650.306 0.015 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (268 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (202 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: @@ -98119,9 +98175,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.1 +50: Time: 0.001 0.001 189.5 50: (ns/day) (hour/ns) -50: Performance: 2025.845 0.012 +50: Performance: 2025.179 0.012 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -98158,13 +98214,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.4 +50: Time: 0.001 0.001 189.5 50: (ns/day) (hour/ns) -50: Performance: 1948.938 0.012 +50: Performance: 1972.652 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -98207,9 +98263,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.6 +50: Time: 0.001 0.001 189.8 50: (ns/day) (hour/ns) -50: Performance: 1969.814 0.012 +50: Performance: 2017.882 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -98248,13 +98304,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.8 +50: Time: 0.001 0.001 189.6 50: (ns/day) (hour/ns) -50: Performance: 1969.814 0.012 +50: Performance: 1981.535 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 50: @@ -98293,13 +98349,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 33 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.7 +50: Time: 0.002 0.001 190.3 50: (ns/day) (hour/ns) -50: Performance: 1989.213 0.012 +50: Performance: 1853.925 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 50: @@ -98342,12 +98398,12 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 189.6 +50: Time: 0.001 0.001 189.4 50: (ns/day) (hour/ns) -50: Performance: 1986.007 0.012 +50: Performance: 2063.850 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (276 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (313 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: @@ -98385,13 +98441,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.5 +50: Time: 0.001 0.001 190.7 50: (ns/day) (hour/ns) -50: Performance: 1806.361 0.013 +50: Performance: 1926.691 0.012 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -98432,9 +98488,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.9 +50: Time: 0.001 0.001 191.0 50: (ns/day) (hour/ns) -50: Performance: 1800.027 0.013 +50: Performance: 1903.474 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -98477,9 +98533,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.7 +50: Time: 0.002 0.001 191.0 50: (ns/day) (hour/ns) -50: Performance: 1815.410 0.013 +50: Performance: 1862.895 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -98518,13 +98574,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.0 +50: Time: 0.001 0.001 191.1 50: (ns/day) (hour/ns) -50: Performance: 1806.096 0.013 +50: Performance: 1897.903 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 50: @@ -98567,9 +98623,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.8 +50: Time: 0.001 0.001 190.9 50: (ns/day) (hour/ns) -50: Performance: 1839.532 0.013 +50: Performance: 1899.073 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 50: @@ -98612,12 +98668,12 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.3 +50: Time: 0.001 0.001 191.2 50: (ns/day) (hour/ns) -50: Performance: 1852.253 0.013 +50: Performance: 1904.651 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (260 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (296 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: @@ -98659,9 +98715,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.1 +50: Time: 0.002 0.001 191.4 50: (ns/day) (hour/ns) -50: Performance: 1651.412 0.015 +50: Performance: 1674.985 0.014 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -98702,9 +98758,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.2 +50: Time: 0.002 0.001 190.8 50: (ns/day) (hour/ns) -50: Performance: 1663.003 0.014 +50: Performance: 1720.356 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -98743,13 +98799,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 28 % of the run time was spent communicating energies, +50: NOTE: 27 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.4 +50: Time: 0.002 0.001 191.3 50: (ns/day) (hour/ns) -50: Performance: 1633.243 0.015 +50: Performance: 1690.381 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -98792,9 +98848,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.1 +50: Time: 0.002 0.001 191.3 50: (ns/day) (hour/ns) -50: Performance: 1598.908 0.015 +50: Performance: 1699.005 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 50: @@ -98837,9 +98893,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.7 +50: Time: 0.002 0.001 191.3 50: (ns/day) (hour/ns) -50: Performance: 1658.302 0.014 +50: Performance: 1694.566 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 50: @@ -98878,17 +98934,17 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 27 % of the run time was spent communicating energies, +50: NOTE: 25 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.0 +50: Time: 0.002 0.001 192.0 50: (ns/day) (hour/ns) -50: Performance: 1669.538 0.014 +50: Performance: 1530.772 0.016 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 (252 ms) -50: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (8988 ms total) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 (276 ms) +50: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (19441 ms total) 50: 50: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -98942,23 +98998,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 0.0%. -50: The balanceable part of the MD step is 35%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.0%. -50: +50: DLB got disabled because it was unsuitable to use. +50: Average load imbalance: 4.5%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.1%. 50: -50: NOTE: 16 % of the run time was spent in domain decomposition, -50: 0 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 13 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 1.216 0.624 194.9 +50: Time: 0.001 0.001 190.4 50: (ns/day) (hour/ns) -50: Performance: 2.354 10.195 +50: Performance: 1875.942 0.013 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -99010,18 +99062,18 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 5.8%. +50: Average load imbalance: 6.4%. 50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.7%. +50: Part of the total run time spent waiting due to load imbalance: 3.0%. 50: 50: 50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.6 +50: Time: 0.001 0.001 191.1 50: (ns/day) (hour/ns) -50: Performance: 1875.371 0.013 +50: Performance: 1902.592 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -99075,18 +99127,18 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 5.0%. -50: The balanceable part of the MD step is 46%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.3%. +50: Average load imbalance: 5.5%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.6%. 50: 50: 50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.3 +50: Time: 0.001 0.001 190.7 50: (ns/day) (hour/ns) -50: Performance: 1860.644 0.013 +50: Performance: 1912.337 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -99140,18 +99192,18 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 4.9%. -50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.3%. +50: Average load imbalance: 4.2%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.0%. 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.5 +50: Time: 0.001 0.001 190.2 50: (ns/day) (hour/ns) -50: Performance: 1854.204 0.013 +50: Performance: 1941.262 0.012 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: @@ -99205,18 +99257,18 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 8.3%. -50: The balanceable part of the MD step is 48%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 4.0%. +50: Average load imbalance: 7.0%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 3.3%. 50: 50: 50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.8 +50: Time: 0.002 0.001 190.6 50: (ns/day) (hour/ns) -50: Performance: 1843.110 0.013 +50: Performance: 1850.306 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: @@ -99270,21 +99322,21 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 6.0%. -50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.8%. +50: Average load imbalance: 5.2%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.5%. 50: 50: 50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.001 0.001 190.4 +50: Time: 0.001 0.001 190.0 50: (ns/day) (hour/ns) -50: Performance: 1870.815 0.013 +50: Performance: 1918.292 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (3407 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (3470 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -99346,9 +99398,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.4 +50: Time: 0.001 0.001 189.9 50: (ns/day) (hour/ns) -50: Performance: 1822.661 0.013 +50: Performance: 1863.177 0.013 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -99399,19 +99451,25 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 4.2%. -50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.0%. +50: DLB got disabled because it was unsuitable to use. +50: Average load imbalance: 12.1%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 5.8%. 50: +50: NOTE: 5.8 % of the available CPU time was lost due to load imbalance +50: in the domain decomposition. +50: You might want to use dynamic load balancing (option -dlb.) +50: You can also consider manually changing the decomposition (option -dd); +50: e.g. by using fewer domains along the box dimension in which there is +50: considerable inhomogeneity in the simulated system. 50: 50: NOTE: 27 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.5 +50: Time: 0.002 0.001 189.8 50: (ns/day) (hour/ns) -50: Performance: 1818.357 0.013 +50: Performance: 1824.280 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -99465,18 +99523,18 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 4.5%. +50: Average load imbalance: 4.9%. 50: The balanceable part of the MD step is 48%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.1%. +50: Part of the total run time spent waiting due to load imbalance: 2.3%. 50: 50: 50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.3 +50: Time: 0.001 0.001 189.7 50: (ns/day) (hour/ns) -50: Performance: 1826.173 0.013 +50: Performance: 1892.365 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -99529,19 +99587,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 8.7%. -50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 4.1%. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 3.9%. +50: The balanceable part of the MD step is 49%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.9%. 50: 50: -50: NOTE: 27 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.4 +50: Time: 0.001 0.001 189.7 50: (ns/day) (hour/ns) -50: Performance: 1759.667 0.014 +50: Performance: 1893.819 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: @@ -99595,18 +99653,18 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 4.3%. +50: Average load imbalance: 5.4%. 50: The balanceable part of the MD step is 48%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.1%. +50: Part of the total run time spent waiting due to load imbalance: 2.6%. 50: 50: 50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.7 +50: Time: 0.001 0.001 190.0 50: (ns/day) (hour/ns) -50: Performance: 1838.434 0.013 +50: Performance: 1870.247 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: @@ -99660,21 +99718,21 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 4.7%. -50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.2%. +50: Average load imbalance: 4.9%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.3%. 50: 50: 50: NOTE: 27 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 188.9 +50: Time: 0.002 0.001 189.8 50: (ns/day) (hour/ns) -50: Performance: 1825.902 0.013 +50: Performance: 1846.424 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (1688 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (2788 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -99720,10 +99778,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 7 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.4 +50: Time: 0.002 0.001 191.2 50: (ns/day) (hour/ns) -50: Performance: 1780.776 0.013 +50: Performance: 1680.467 0.014 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -99769,9 +99830,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.2 +50: Time: 0.002 0.001 190.7 50: (ns/day) (hour/ns) -50: Performance: 1830.242 0.013 +50: Performance: 1826.443 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -99818,10 +99879,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 31 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.9 +50: Time: 1.744 0.888 196.4 50: (ns/day) (hour/ns) -50: Performance: 1770.794 0.014 +50: Performance: 1.654 14.509 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -99869,9 +99933,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.5 +50: Time: 0.002 0.001 190.4 50: (ns/day) (hour/ns) -50: Performance: 1780.776 0.013 +50: Performance: 1822.931 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: @@ -99921,7 +99985,7 @@ 50: Core t (s) Wall t (s) (%) 50: Time: 0.002 0.001 190.6 50: (ns/day) (hour/ns) -50: Performance: 1824.820 0.013 +50: Performance: 1865.716 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: @@ -99969,12 +100033,12 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.1 +50: Time: 0.002 0.001 190.4 50: (ns/day) (hour/ns) -50: Performance: 1828.341 0.013 +50: Performance: 1802.661 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (2455 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (4044 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -100020,10 +100084,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 31 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.4 +50: Time: 1.744 0.888 196.4 50: (ns/day) (hour/ns) -50: Performance: 1772.578 0.014 +50: Performance: 1.654 14.508 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -100069,9 +100136,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.1 +50: Time: 0.002 0.001 189.9 50: (ns/day) (hour/ns) -50: Performance: 1657.187 0.014 +50: Performance: 1848.640 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -100119,9 +100186,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.8 +50: Time: 0.002 0.001 189.9 50: (ns/day) (hour/ns) -50: Performance: 1747.934 0.014 +50: Performance: 1796.091 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -100169,9 +100236,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.3 +50: Time: 0.002 0.001 189.1 50: (ns/day) (hour/ns) -50: Performance: 1738.562 0.014 +50: Performance: 1782.579 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: @@ -100219,9 +100286,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.1 +50: Time: 0.002 0.001 190.2 50: (ns/day) (hour/ns) -50: Performance: 1761.176 0.014 +50: Performance: 1757.659 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: @@ -100269,12 +100336,12 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.4 +50: Time: 0.002 0.001 189.9 50: (ns/day) (hour/ns) -50: Performance: 1796.353 0.013 +50: Performance: 1783.353 0.013 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (2706 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (3924 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -100320,17 +100387,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 12 % of the run time was spent in domain decomposition, -50: 0 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) -50: -50: NOTE: 24 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 1.055 0.527 200.0 +50: Time: 0.002 0.001 191.2 50: (ns/day) (hour/ns) -50: Performance: 2.785 8.619 +50: Performance: 1722.279 0.014 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -100376,9 +100436,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.8 +50: Time: 0.002 0.001 191.2 50: (ns/day) (hour/ns) -50: Performance: 1642.606 0.015 +50: Performance: 1710.801 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -100426,9 +100486,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.6 +50: Time: 0.002 0.001 191.6 50: (ns/day) (hour/ns) -50: Performance: 1669.764 0.014 +50: Performance: 1697.601 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -100476,9 +100536,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.8 +50: Time: 0.002 0.001 191.4 50: (ns/day) (hour/ns) -50: Performance: 1648.981 0.015 +50: Performance: 1745.211 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: @@ -100526,9 +100586,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.6 +50: Time: 0.002 0.001 191.4 50: (ns/day) (hour/ns) -50: Performance: 1633.243 0.015 +50: Performance: 1657.187 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: @@ -100576,12 +100636,12 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.8 +50: Time: 0.002 0.001 191.5 50: (ns/day) (hour/ns) -50: Performance: 1639.982 0.015 +50: Performance: 1733.425 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (3431 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (3146 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -100628,9 +100688,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.2 +50: Time: 0.002 0.001 191.1 50: (ns/day) (hour/ns) -50: Performance: 1651.855 0.015 +50: Performance: 1706.772 0.014 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -100676,9 +100736,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.3 +50: Time: 0.002 0.001 191.1 50: (ns/day) (hour/ns) -50: Performance: 1623.559 0.015 +50: Performance: 1693.169 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -100728,7 +100788,7 @@ 50: Core t (s) Wall t (s) (%) 50: Time: 0.002 0.001 191.0 50: (ns/day) (hour/ns) -50: Performance: 1622.490 0.015 +50: Performance: 1731.233 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -100775,13 +100835,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 27 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 2.016 1.024 196.9 +50: Time: 0.002 0.001 191.3 50: (ns/day) (hour/ns) -50: Performance: 1.434 16.732 +50: Performance: 1749.672 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: @@ -100829,9 +100886,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.5 +50: Time: 0.002 0.001 190.8 50: (ns/day) (hour/ns) -50: Performance: 1629.356 0.015 +50: Performance: 1662.105 0.014 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: @@ -100879,12 +100936,12 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.0 +50: Time: 0.002 0.001 190.7 50: (ns/day) (hour/ns) -50: Performance: 1655.406 0.014 +50: Performance: 1643.263 0.015 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (3872 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (2820 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -100937,15 +100994,15 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 4.7%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.6%. +50: Average load imbalance: 8.5%. +50: The balanceable part of the MD step is 55%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 4.7%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.2 +50: Time: 0.002 0.001 190.8 50: (ns/day) (hour/ns) -50: Performance: 1344.521 0.018 +50: Performance: 1274.562 0.019 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -100997,15 +101054,15 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 4.2%. +50: Average load imbalance: 4.0%. 50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.4%. +50: Part of the total run time spent waiting due to load imbalance: 2.3%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.0 +50: Time: 0.002 0.001 190.3 50: (ns/day) (hour/ns) -50: Performance: 1366.743 0.018 +50: Performance: 1402.526 0.017 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -101059,15 +101116,15 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 5.0%. +50: Average load imbalance: 4.0%. 50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.9%. +50: Part of the total run time spent waiting due to load imbalance: 2.3%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.0 +50: Time: 0.002 0.001 189.5 50: (ns/day) (hour/ns) -50: Performance: 1463.150 0.016 +50: Performance: 1391.753 0.017 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -101121,15 +101178,15 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 5.0%. +50: Average load imbalance: 4.8%. 50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.8%. +50: Part of the total run time spent waiting due to load imbalance: 2.7%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.9 +50: Time: 0.002 0.001 190.0 50: (ns/day) (hour/ns) -50: Performance: 1339.260 0.018 +50: Performance: 1341.009 0.018 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: @@ -101183,15 +101240,21 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 4.4%. +50: Average load imbalance: 9.0%. 50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.5%. +50: Part of the total run time spent waiting due to load imbalance: 5.0%. 50: +50: NOTE: 5.0 % of the available CPU time was lost due to load imbalance +50: in the domain decomposition. +50: You might want to use dynamic load balancing (option -dlb.) +50: You can also consider manually changing the decomposition (option -dd); +50: e.g. by using fewer domains along the box dimension in which there is +50: considerable inhomogeneity in the simulated system. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.5 +50: Time: 0.002 0.001 189.9 50: (ns/day) (hour/ns) -50: Performance: 1343.348 0.018 +50: Performance: 1401.250 0.017 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: @@ -101245,18 +101308,18 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 7.5%. -50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 4.2%. +50: Average load imbalance: 8.1%. +50: The balanceable part of the MD step is 58%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 4.7%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.0 +50: Time: 0.002 0.001 189.4 50: (ns/day) (hour/ns) -50: Performance: 1346.725 0.018 +50: Performance: 1401.568 0.017 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (2284 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (3456 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -101303,9 +101366,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.2 +50: Time: 0.002 0.001 189.1 50: (ns/day) (hour/ns) -50: Performance: 1288.692 0.019 +50: Performance: 1301.763 0.018 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -101350,13 +101413,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 34 % of the run time was spent communicating energies, +50: NOTE: 5 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 2.877 1.439 200.0 +50: Time: 0.002 0.001 189.3 50: (ns/day) (hour/ns) -50: Performance: 1.021 23.507 +50: Performance: 1330.726 0.018 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -101406,7 +101469,7 @@ 50: Core t (s) Wall t (s) (%) 50: Time: 0.002 0.001 189.5 50: (ns/day) (hour/ns) -50: Performance: 1251.644 0.019 +50: Performance: 1315.382 0.018 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -101454,9 +101517,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 188.6 +50: Time: 0.002 0.001 189.1 50: (ns/day) (hour/ns) -50: Performance: 1258.677 0.019 +50: Performance: 1252.662 0.019 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: @@ -101504,9 +101567,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.6 +50: Time: 0.002 0.001 188.5 50: (ns/day) (hour/ns) -50: Performance: 1291.664 0.019 +50: Performance: 1329.864 0.018 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: @@ -101554,18 +101617,18 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 189.2 +50: Time: 0.002 0.001 189.1 50: (ns/day) (hour/ns) -50: Performance: 1264.230 0.019 +50: Performance: 1302.727 0.018 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (3901 ms) -50: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (23744 ms total) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (3390 ms) +50: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (27038 ms total) 50: 50: [----------] Global test environment tear-down -50: [==========] 27 tests from 3 test cases ran. (32996 ms total) +50: [==========] 27 tests from 3 test cases ran. (47152 ms total) 50: [ PASSED ] 27 tests. -50/54 Test #50: MdrunMpiCoordinationTestsTwoRanks ... Passed 33.01 sec +50/54 Test #50: MdrunMpiCoordinationTestsTwoRanks ... Passed 47.17 sec test 51 Start 51: GmxapiExternalInterfaceTests @@ -101575,7 +101638,7 @@ 51: [----------] Global test environment set-up. 51: [----------] 8 tests from GmxApiTest 51: [ RUN ] GmxApiTest.ApiRunnerRestrainedMD -51: Setting the LD random seed to 2059397045 +51: Setting the LD random seed to 125624062 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -101616,13 +101679,16 @@ 51: 51: Writing final coordinates. 51: +51: NOTE: 32 % of the run time was spent in pair search, +51: you might want to increase nstlist (this has no effect on accuracy) +51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.024 0.012 199.1 +51: Time: 0.200 0.100 199.9 51: (ns/day) (hour/ns) -51: Performance: 41.279 0.581 -51: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (499 ms) +51: Performance: 5.060 4.744 +51: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (676 ms) 51: [ RUN ] GmxApiTest.SystemConstruction -51: Setting the LD random seed to 2136955821 +51: Setting the LD random seed to -1627916971 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -101649,13 +101715,13 @@ 51: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 51: Note that mdrun will redetermine rlist based on the actual pair-list setup 51: This run will generate roughly 0 Mb of data -51: [ OK ] GmxApiTest.SystemConstruction (488 ms) +51: [ OK ] GmxApiTest.SystemConstruction (374 ms) 51: [ RUN ] GmxApiTest.SaneVersionComparisons 51: [ OK ] GmxApiTest.SaneVersionComparisons (0 ms) 51: [ RUN ] GmxApiTest.VersionNamed0_1_Features 51: [ OK ] GmxApiTest.VersionNamed0_1_Features (0 ms) 51: [ RUN ] GmxApiTest.RunnerBasicMD -51: Setting the LD random seed to -1611154186 +51: Setting the LD random seed to 670788479 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -101696,16 +101762,13 @@ 51: 51: Writing final coordinates. 51: -51: NOTE: 59 % of the run time was spent in pair search, -51: you might want to increase nstlist (this has no effect on accuracy) -51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.108 0.054 199.8 +51: Time: 0.051 0.025 199.7 51: (ns/day) (hour/ns) -51: Performance: 9.332 2.572 -51: [ OK ] GmxApiTest.RunnerBasicMD (530 ms) +51: Performance: 19.859 1.209 +51: [ OK ] GmxApiTest.RunnerBasicMD (275 ms) 51: [ RUN ] GmxApiTest.RunnerReinitialize -51: Setting the LD random seed to 1073577536 +51: Setting the LD random seed to 2052554025 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -101751,9 +101814,9 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.171 0.086 199.9 +51: Time: 0.260 0.130 199.9 51: (ns/day) (hour/ns) -51: Performance: 41.302 0.581 +51: Performance: 27.211 0.882 51: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary/GmxApiTest_RunnerReinitialize.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 51: Changing nstlist from 10 to 50, rlist from 1.041 to 1.309 51: @@ -101769,12 +101832,12 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.190 0.095 199.9 +51: Time: 0.171 0.085 199.9 51: (ns/day) (hour/ns) -51: Performance: 37.256 0.644 -51: [ OK ] GmxApiTest.RunnerReinitialize (439 ms) +51: Performance: 41.497 0.578 +51: [ OK ] GmxApiTest.RunnerReinitialize (755 ms) 51: [ RUN ] GmxApiTest.RunnerContinuedMD -51: Setting the LD random seed to -536904041 +51: Setting the LD random seed to 1608220533 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -101816,9 +101879,9 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.064 0.032 199.6 +51: Time: 0.093 0.046 199.8 51: (ns/day) (hour/ns) -51: Performance: 58.101 0.413 +51: Performance: 39.982 0.600 51: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary/GmxApiTest_RunnerContinuedMD.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 51: Overriding nsteps with value passed on the command line: 20 steps, 0.0391 ps 51: Changing nstlist from 10 to 50, rlist from 1.041 to 1.309 @@ -101835,16 +101898,13 @@ 51: 51: Writing final coordinates. 51: -51: NOTE: 33 % of the run time was spent in pair search, -51: you might want to increase nstlist (this has no effect on accuracy) -51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.192 0.096 199.9 +51: Time: 0.169 0.085 199.9 51: (ns/day) (hour/ns) -51: Performance: 36.888 0.651 -51: [ OK ] GmxApiTest.RunnerContinuedMD (583 ms) +51: Performance: 41.821 0.574 +51: [ OK ] GmxApiTest.RunnerContinuedMD (376 ms) 51: [ RUN ] GmxApiTest.ApiRunnerStopSignalClient -51: Setting the LD random seed to -16933389 +51: Setting the LD random seed to -1217937413 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -101885,13 +101945,13 @@ 51: 51: Writing final coordinates. 51: -51: NOTE: 26 % of the run time was spent in pair search, +51: NOTE: 18 % of the run time was spent in pair search, 51: you might want to increase nstlist (this has no effect on accuracy) 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.184 0.092 199.9 +51: Time: 0.027 0.014 199.3 51: (ns/day) (hour/ns) -51: Performance: 3.665 6.548 +51: Performance: 24.932 0.963 51: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary/GmxApiTest_ApiRunnerStopSignalClient.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 51: Overriding nsteps with value passed on the command line: 2 steps, 0.00391 ps 51: Changing nstlist from 10 to 1, rlist from 1.041 to 1 @@ -101906,12 +101966,15 @@ 51: starting mdrun 'Water and methane' 51: 2 steps, 0.0 ps. 51: +51: NOTE: 19 % of the run time was spent in pair search, +51: you might want to increase nstlist (this has no effect on accuracy) +51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.040 0.020 199.3 +51: Time: 0.027 0.013 199.4 51: (ns/day) (hour/ns) -51: Performance: 16.913 1.419 -51: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (688 ms) -51: [----------] 8 tests from GmxApiTest (3227 ms total) +51: Performance: 25.337 0.947 +51: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (279 ms) +51: [----------] 8 tests from GmxApiTest (2736 ms total) 51: 51: [----------] 1 test from GmxApiBasicTest 51: [ RUN ] GmxApiBasicTest.Status @@ -101919,9 +101982,9 @@ 51: [----------] 1 test from GmxApiBasicTest (0 ms total) 51: 51: [----------] Global test environment tear-down -51: [==========] 9 tests from 2 test cases ran. (3227 ms total) +51: [==========] 9 tests from 2 test cases ran. (2736 ms total) 51: [ PASSED ] 9 tests. -51/54 Test #51: GmxapiExternalInterfaceTests ........ Passed 3.26 sec +51/54 Test #51: GmxapiExternalInterfaceTests ........ Passed 2.77 sec test 52 Start 52: GmxapiMpiTests @@ -101931,7 +101994,7 @@ 52: [----------] Global test environment set-up. 52: [----------] 8 tests from GmxApiTest 52: [ RUN ] GmxApiTest.ApiRunnerRestrainedMD -52: Setting the LD random seed to 1996488151 +52: Setting the LD random seed to -482502161 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -101972,13 +102035,16 @@ 52: 52: Writing final coordinates. 52: +52: NOTE: 10 % of the run time was spent in pair search, +52: you might want to increase nstlist (this has no effect on accuracy) +52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.032 0.016 199.3 +52: Time: 0.624 0.312 200.0 52: (ns/day) (hour/ns) -52: Performance: 31.476 0.762 -52: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (612 ms) +52: Performance: 1.622 14.795 +52: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (706 ms) 52: [ RUN ] GmxApiTest.SystemConstruction -52: Setting the LD random seed to -814359073 +52: Setting the LD random seed to -1081605 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -102005,13 +102071,13 @@ 52: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 52: Note that mdrun will redetermine rlist based on the actual pair-list setup 52: This run will generate roughly 0 Mb of data -52: [ OK ] GmxApiTest.SystemConstruction (296 ms) +52: [ OK ] GmxApiTest.SystemConstruction (517 ms) 52: [ RUN ] GmxApiTest.SaneVersionComparisons 52: [ OK ] GmxApiTest.SaneVersionComparisons (0 ms) 52: [ RUN ] GmxApiTest.VersionNamed0_1_Features 52: [ OK ] GmxApiTest.VersionNamed0_1_Features (0 ms) 52: [ RUN ] GmxApiTest.RunnerBasicMD -52: Setting the LD random seed to -341197345 +52: Setting the LD random seed to 1744306156 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -102052,16 +102118,16 @@ 52: 52: Writing final coordinates. 52: -52: NOTE: 10 % of the run time was spent in pair search, +52: NOTE: 20 % of the run time was spent in pair search, 52: you might want to increase nstlist (this has no effect on accuracy) 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.032 0.016 199.5 +52: Time: 0.328 0.164 199.9 52: (ns/day) (hour/ns) -52: Performance: 31.457 0.763 -52: [ OK ] GmxApiTest.RunnerBasicMD (264 ms) +52: Performance: 3.086 7.778 +52: [ OK ] GmxApiTest.RunnerBasicMD (754 ms) 52: [ RUN ] GmxApiTest.RunnerReinitialize -52: Setting the LD random seed to -67239937 +52: Setting the LD random seed to 1795155939 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -102106,10 +102172,13 @@ 52: 52: Writing final coordinates. 52: +52: NOTE: 40 % of the run time was spent in pair search, +52: you might want to increase nstlist (this has no effect on accuracy) +52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.170 0.085 199.9 +52: Time: 0.160 0.080 199.8 52: (ns/day) (hour/ns) -52: Performance: 41.627 0.577 +52: Performance: 44.255 0.542 52: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary/GmxApiTest_RunnerReinitialize.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 52: Changing nstlist from 10 to 50, rlist from 1.041 to 1.309 52: @@ -102125,12 +102194,12 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.169 0.085 199.9 +52: Time: 0.968 0.484 200.0 52: (ns/day) (hour/ns) -52: Performance: 41.811 0.574 -52: [ OK ] GmxApiTest.RunnerReinitialize (417 ms) +52: Performance: 7.318 3.280 +52: [ OK ] GmxApiTest.RunnerReinitialize (1208 ms) 52: [ RUN ] GmxApiTest.RunnerContinuedMD -52: Setting the LD random seed to -513868353 +52: Setting the LD random seed to -1628475394 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -102172,9 +102241,9 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.093 0.046 199.7 +52: Time: 0.149 0.075 199.9 52: (ns/day) (hour/ns) -52: Performance: 40.064 0.599 +52: Performance: 24.908 0.964 52: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary/GmxApiTest_RunnerContinuedMD.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 52: Overriding nsteps with value passed on the command line: 20 steps, 0.0391 ps 52: Changing nstlist from 10 to 50, rlist from 1.041 to 1.309 @@ -102192,12 +102261,12 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.169 0.085 199.9 +52: Time: 0.697 0.349 200.0 52: (ns/day) (hour/ns) -52: Performance: 41.912 0.573 -52: [ OK ] GmxApiTest.RunnerContinuedMD (381 ms) +52: Performance: 10.165 2.361 +52: [ OK ] GmxApiTest.RunnerContinuedMD (1003 ms) 52: [ RUN ] GmxApiTest.ApiRunnerStopSignalClient -52: Setting the LD random seed to -1141378116 +52: Setting the LD random seed to -1080033357 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -102242,9 +102311,9 @@ 52: you might want to increase nstlist (this has no effect on accuracy) 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.027 0.013 199.3 +52: Time: 0.496 0.248 199.9 52: (ns/day) (hour/ns) -52: Performance: 25.294 0.949 +52: Performance: 1.361 17.640 52: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary/GmxApiTest_ApiRunnerStopSignalClient.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 52: Overriding nsteps with value passed on the command line: 2 steps, 0.00391 ps 52: Changing nstlist from 10 to 1, rlist from 1.041 to 1 @@ -102263,11 +102332,11 @@ 52: you might want to increase nstlist (this has no effect on accuracy) 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.026 0.013 199.4 +52: Time: 0.496 0.248 199.9 52: (ns/day) (hour/ns) -52: Performance: 25.563 0.939 -52: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (274 ms) -52: [----------] 8 tests from GmxApiTest (2244 ms total) +52: Performance: 1.361 17.640 +52: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (1155 ms) +52: [----------] 8 tests from GmxApiTest (5346 ms total) 52: 52: [----------] 1 test from GmxApiBasicTest 52: [ RUN ] GmxApiBasicTest.Status @@ -102275,9 +102344,9 @@ 52: [----------] 1 test from GmxApiBasicTest (0 ms total) 52: 52: [----------] Global test environment tear-down -52: [==========] 9 tests from 2 test cases ran. (2244 ms total) +52: [==========] 9 tests from 2 test cases ran. (5346 ms total) 52: [ PASSED ] 9 tests. -52/54 Test #52: GmxapiMpiTests ...................... Passed 2.28 sec +52/54 Test #52: GmxapiMpiTests ...................... Passed 5.37 sec test 53 Start 53: GmxapiInternalInterfaceTests @@ -102287,7 +102356,7 @@ 53: [----------] Global test environment set-up. 53: [----------] 2 tests from GmxApiTest 53: [ RUN ] GmxApiTest.BuildApiWorkflowImpl -53: Setting the LD random seed to -37896225 +53: Setting the LD random seed to 2137357550 53: Generated 331705 of the 331705 non-bonded parameter combinations 53: Generating 1-4 interactions: fudge = 0.5 53: Generated 331705 of the 331705 1-4 parameter combinations @@ -102314,9 +102383,9 @@ 53: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 53: Note that mdrun will redetermine rlist based on the actual pair-list setup 53: This run will generate roughly 0 Mb of data -53: [ OK ] GmxApiTest.BuildApiWorkflowImpl (259 ms) +53: [ OK ] GmxApiTest.BuildApiWorkflowImpl (576 ms) 53: [ RUN ] GmxApiTest.CreateApiWorkflow -53: Setting the LD random seed to -80019507 +53: Setting the LD random seed to 1181186011 53: Generated 331705 of the 331705 non-bonded parameter combinations 53: Generating 1-4 interactions: fudge = 0.5 53: Generated 331705 of the 331705 1-4 parameter combinations @@ -102343,13 +102412,13 @@ 53: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 53: Note that mdrun will redetermine rlist based on the actual pair-list setup 53: This run will generate roughly 0 Mb of data -53: [ OK ] GmxApiTest.CreateApiWorkflow (244 ms) -53: [----------] 2 tests from GmxApiTest (503 ms total) +53: [ OK ] GmxApiTest.CreateApiWorkflow (534 ms) +53: [----------] 2 tests from GmxApiTest (1110 ms total) 53: 53: [----------] Global test environment tear-down -53: [==========] 2 tests from 1 test case ran. (503 ms total) +53: [==========] 2 tests from 1 test case ran. (1110 ms total) 53: [ PASSED ] 2 tests. -53/54 Test #53: GmxapiInternalInterfaceTests ........ Passed 0.52 sec +53/54 Test #53: GmxapiInternalInterfaceTests ........ Passed 1.15 sec test 54 Start 54: GmxapiInternalsMpiTests @@ -102359,7 +102428,7 @@ 54: [----------] Global test environment set-up. 54: [----------] 2 tests from GmxApiTest 54: [ RUN ] GmxApiTest.BuildApiWorkflowImpl -54: Setting the LD random seed to -553697417 +54: Setting the LD random seed to 267369693 54: Generated 331705 of the 331705 non-bonded parameter combinations 54: Generating 1-4 interactions: fudge = 0.5 54: Generated 331705 of the 331705 1-4 parameter combinations @@ -102386,9 +102455,9 @@ 54: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 54: Note that mdrun will redetermine rlist based on the actual pair-list setup 54: This run will generate roughly 0 Mb of data -54: [ OK ] GmxApiTest.BuildApiWorkflowImpl (255 ms) +54: [ OK ] GmxApiTest.BuildApiWorkflowImpl (550 ms) 54: [ RUN ] GmxApiTest.CreateApiWorkflow -54: Setting the LD random seed to 761264025 +54: Setting the LD random seed to -404483 54: Generated 331705 of the 331705 non-bonded parameter combinations 54: Generating 1-4 interactions: fudge = 0.5 54: Generated 331705 of the 331705 1-4 parameter combinations @@ -102415,24 +102484,24 @@ 54: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 54: Note that mdrun will redetermine rlist based on the actual pair-list setup 54: This run will generate roughly 0 Mb of data -54: [ OK ] GmxApiTest.CreateApiWorkflow (247 ms) -54: [----------] 2 tests from GmxApiTest (502 ms total) +54: [ OK ] GmxApiTest.CreateApiWorkflow (541 ms) +54: [----------] 2 tests from GmxApiTest (1091 ms total) 54: 54: [----------] Global test environment tear-down -54: [==========] 2 tests from 1 test case ran. (502 ms total) +54: [==========] 2 tests from 1 test case ran. (1092 ms total) 54: [ PASSED ] 2 tests. -54/54 Test #54: GmxapiInternalsMpiTests ............. Passed 0.51 sec +54/54 Test #54: GmxapiInternalsMpiTests ............. Passed 1.14 sec 100% tests passed, 0 tests failed out of 54 Label Time Summary: -GTest = 69.30 sec*proc (54 tests) -IntegrationTest = 17.17 sec*proc (12 tests) -MpiTest = 49.29 sec*proc (8 tests) -SlowTest = 45.07 sec*proc (2 tests) -UnitTest = 7.07 sec*proc (40 tests) +GTest = 143.07 sec*proc (54 tests) +IntegrationTest = 72.36 sec*proc (12 tests) +MpiTest = 81.08 sec*proc (8 tests) +SlowTest = 59.96 sec*proc (2 tests) +UnitTest = 10.75 sec*proc (40 tests) -Total Test time (real) = 69.36 sec +Total Test time (real) = 143.12 sec touch build-basic dh_testdir /usr/bin/make -j12 -C build/mpich @@ -102443,60 +102512,60 @@ make[2]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +Scanning dependencies of target scanner +Scanning dependencies of target release-version-info make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -Scanning dependencies of target release-version-info -Scanning dependencies of target scanner +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -Scanning dependencies of target lmfit_objlib +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build +Scanning dependencies of target lmfit_objlib make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp -Scanning dependencies of target thread_mpi /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +Scanning dependencies of target thread_mpi cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' Scanning dependencies of target tng_io_obj -Scanning dependencies of target linearalgebra make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/dict.c /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp +Scanning dependencies of target linearalgebra +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= [ 0%] Built target release-version-info /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend @@ -102505,36 +102574,25 @@ Scanning dependencies of target mdrun_objlib Scanning dependencies of target modularsimulator make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/checkpointhelper.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/fixpoint.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/lock.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffman.c cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/pthreads.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/system_error.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 1%] Built target thread_mpi -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/nrjac.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/dict.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/constraintelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/fixpoint.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffman.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/sparsematrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/nonbonded_bench.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 1%] Built target lmfit_objlib +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffmem.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/domdechelper.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/lz77.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/energyelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/energyelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/merge_sort.c +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 1%] Built target thread_mpi cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/mtf.c cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/rle.c cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/tng_compress.c @@ -102545,15 +102603,26 @@ cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc3.c cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/tng_io.c cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/md5.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp +[ 1%] Built target lmfit_objlib +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem 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CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/domdechelper.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/nonbonded_bench.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/energyelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/energyelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/forceelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/sparsematrix.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/modularsimulator.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 2%] Built target mdrun_objlib cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/propagator.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/shellfcelement.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 2%] Built target mdrun_objlib cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/signallers.cpp cd 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/build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/topologyholder.cpp @@ -103030,11 +103099,11 @@ cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_solve.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spline_work.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spread.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_gpu_program.cpp /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_gpu_program.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp @@ -103187,115 +103256,113 @@ /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +Scanning dependencies of target thread_mpi +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +Scanning dependencies of target scanner +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' Scanning dependencies of target release-version-info +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' Scanning dependencies of target lmfit_objlib +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/mpich-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/mpich-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp -Scanning dependencies of target scanner -Scanning dependencies of target thread_mpi Scanning dependencies of target linearalgebra make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -Scanning dependencies of target mdrun_objlib -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp -Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/dict.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp +[ 0%] Built target release-version-info +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= Scanning dependencies of target modularsimulator make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build -[ 0%] Built target release-version-info -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/checkpointhelper.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/fixpoint.c cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/lock.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/pthreads.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/system_error.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -[ 1%] Built target thread_mpi -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/nrjac.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/dict.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/constraintelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/fixpoint.c cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffman.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/sparsematrix.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffmem.c cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/lz77.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/domdechelper.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -[ 1%] Built target lmfit_objlib cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/merge_sort.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/mtf.c +[ 1%] Built target thread_mpi +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/rle.c +Scanning dependencies of target mdrun_objlib +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/tng_compress.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/nonbonded_bench.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/vals16.c cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/warnmalloc.c cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/widemuldiv.c cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc2.c +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc3.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp +[ 1%] Built target lmfit_objlib cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/tng_io.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/nrjac.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/sparsematrix.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/md5.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/constraintelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/domdechelper.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/energyelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/energyelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/nonbonded_bench.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/forceelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/modularsimulator.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -[ 2%] Built target mdrun_objlib cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/propagator.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/shellfcelement.cpp @@ -103305,6 +103372,8 @@ cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/trajectoryelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/vrescalethermostat.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +[ 2%] Built target mdrun_objlib +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' [ 2%] Built target linearalgebra make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' [ 2%] Built target scanner @@ -103714,11 +103783,11 @@ cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/mdoutf.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/membed.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/nsgrid.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/perf_est.cpp /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp:103:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/perf_est.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_gamess.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_gaussian.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_mopac.cpp @@ -103774,12 +103843,12 @@ cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_redistribute.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_solve.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spline_work.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spread.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_gpu_program.cpp /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spread.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_gpu_program.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp @@ -103938,76 +104007,76 @@ /usr/bin/make -f CMakeFiles/Makefile2 CMakeFiles/tests.dir/all make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/external/googletest/googlemock/gtest /build/reproducible-path/gromacs-2020.6/build/mpich/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +[ 0%] Built target scanner +[ 0%] Built target release-version-info +[ 1%] Built target thread_mpi +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +[ 1%] Built target lmfit_objlib +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/external/googletest/googlemock/gtest /build/reproducible-path/gromacs-2020.6/build/mpich/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build Scanning dependencies of target gtest make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build +[ 3%] Built target tng_io_obj make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/external/googletest/googlemock/gtest && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -I/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=c++14 -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/src/gtest-all.cc -[ 0%] Built target lmfit_objlib -[ 0%] Built target scanner -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 2%] Built target linearalgebra -[ 3%] Built target thread_mpi -[ 3%] Built target tng_io_obj +[ 3%] Built target linearalgebra [ 5%] Built target modularsimulator -[ 5%] Built target release-version-info /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= @@ -104073,154 +104142,179 @@ make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' [ 76%] Built target testutils /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend +Scanning dependencies of target selection-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build +Scanning dependencies of target testutils-mpi-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/indexutil.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= -Scanning dependencies of target utility-mpi-test -Scanning dependencies of target testutils-mpi-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/mpitest.cpp -Scanning dependencies of target onlinehelp-test-shared -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/nbsearch.cpp +Scanning dependencies of target utility-mpi-test Scanning dependencies of target testutils-test -Scanning dependencies of target domdec-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/mpitest.cpp /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/poscalc.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/interactivetest.cpp -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -Scanning dependencies of target selection-test -Scanning dependencies of target fft-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/hashedmap.cpp -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build -Scanning dependencies of target gpu_utils-test -Scanning dependencies of target ewald-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -Scanning dependencies of target applied_forces-test +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectioncollection.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests/fft.cpp -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp +/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/indexutil.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= +Scanning dependencies of target utility-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmebsplinetest.cpp -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/gputest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/alignedallocator.cpp Scanning dependencies of target mdlib-test -Scanning dependencies of target utility-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp +Scanning dependencies of target applied_forces-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/alignedallocator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/clfftinitializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectionoption.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/hostallocator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constr.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' [ 77%] Built target testutils-mpi-test -/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= -Scanning dependencies of target hardware-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= +Scanning dependencies of target onlinehelp-test-shared make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests/hardwaretopology.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/testasserts_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constr.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/toputils.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 77%] Built target utility-mpi-test +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= +Scanning dependencies of target domdec-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/hashedmap.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingoptions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/electricfield.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o /usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 77%] Built target utility-mpi-test -/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend [ 77%] Built target onlinehelp-test-shared +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= +Scanning dependencies of target ewald-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmebsplinetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/xvgtest_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= +Scanning dependencies of target fft-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests/fft.cpp +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= +Scanning dependencies of target gpu_utils-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/gputest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/clfftinitializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/arrayref.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/hostallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend +[ 77%] Built target testutils-test +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend +Scanning dependencies of target hardware-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests/hardwaretopology.cpp Scanning dependencies of target math-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/arrayrefwithpadding.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/coordinatetransformation.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 77%] Built target domdec-test +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= Scanning dependencies of target mdrunutility-test-shared make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingoptions.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/nbsearch.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 77%] Built target fft-test +[ 77%] Built target applied_forces-test /usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= @@ -104229,12 +104323,12 @@ /usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/accessor_policy.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestrunners.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 77%] Built target domdec-test +[ 77%] Built target fft-test /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= @@ -104243,54 +104337,62 @@ /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpformat.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extents.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/arrayref.cpp -/usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extents.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 78%] Built target mdrunutility-test-shared +[ 77%] Built target hardware-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/ebin.cpp Scanning dependencies of target options-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/abstractoptionstorage.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o +/usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpmanager.cpp +[ 78%] Built target mdrunutility-test-shared +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoption.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extensions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/layouts.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfit.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/dofit.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/energyoutput.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/mdspan.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/exponentialmovingaverage.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 78%] Built target hardware-test +[ 79%] Built target selection-test /usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoptionmanager.cpp Scanning dependencies of target pbcutil-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbc.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbcenums.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extensions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/testasserts_tests.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/coordinatetransformation.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestrunners.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/poscalc.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/electricfield.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/layouts.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/ebin.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/xvgtest_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/functions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp -[ 78%] Built target pbcutil-test +[ 79%] Built target pbcutil-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= @@ -104299,32 +104401,30 @@ /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/exponentialdistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectioncollection.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/energyoutput.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/mdspan.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfit.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 79%] Built target onlinehelp-test +[ 80%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/restraint/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/gausstransform.cpp Scanning dependencies of target restraintpotential-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/restraint/tests/manager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/option.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/optionsassigner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/repeatingsection.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/expanded.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfittingforce.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/gammadistribution.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 79%] Built target testutils-test +[ 80%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= @@ -104333,9 +104433,8 @@ /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests/splinetable.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoption.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 79%] Built target applied_forces-test +[ 80%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= @@ -104344,50 +104443,55 @@ /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests/usergpuids.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmetestcommon.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/invertmatrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/matrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrog.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/normaldistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/multidimarray.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/timeunitmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/treesupport.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 79%] Built target restraintpotential-test +[ 81%] Built target ewald-test /usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp Scanning dependencies of target topology-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/exclusionblocks.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/normaldistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/dofit.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoptionmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/mtop.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/paddedvector.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/seed.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 79%] Built target gpu_utils-test +[ 82%] Built target taskassignment-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp Scanning dependencies of target pull-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests/pull.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/expanded.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/exponentialmovingaverage.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/seed.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/symtab.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/mtop.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/vectypes.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 80%] Built target taskassignment-test +[ 82%] Built target mdspan-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= @@ -104396,9 +104500,14 @@ /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/bias.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformintdistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/symtab.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settle.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 81%] Built target pull-test +[ 83%] Built target pull-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= @@ -104407,21 +104516,11 @@ /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/bootstrap_loadstore.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/functions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrog.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/option.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmetestcommon.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/base.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectionoption.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/optionsassigner.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformrealdistribution.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 82%] Built target topology-test +[ 84%] Built target options-test /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= @@ -104430,12 +104529,7 @@ /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-unused-member-function -o CMakeFiles/compat-test.dir/optional.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/optional.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 82%] Built target mdspan-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= @@ -104444,29 +104538,27 @@ /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/confio.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/gausstransform.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/biasstate.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/base.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/filemd5.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 82%] Built target table-test +[ 84%] Built target table-test /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 Scanning dependencies of target commandline-test -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/filemd5.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 83%] Built target ewald-test +[ 85%] Built target topology-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= @@ -104475,23 +104567,14 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/grid.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settle.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformintdistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfittingforce.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/biasstate.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformrealdistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/invertmatrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymap.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/repeatingsection.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 84%] Built target awh-test +[ 86%] Built target random-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= @@ -104500,115 +104583,101 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymap.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask32.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/grid.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask32.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/matrix.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 84%] Built target mdrunutility-mpi-test -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/multidimarray.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/string_view.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && 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/usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/shake.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymapheader.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/toputils.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 85%] Built target random-test -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/shake.cpp +[ 86%] Built target mdrunutility-mpi-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem 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/build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/readinp.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask64.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/simulationsignal.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem 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/usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_math.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/timeunitmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external 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/build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/readinp.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_vector_operations.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 +[ 86%] Built target mdrunutility-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask128.cpp +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 85%] Built target mdrunutility-test +[ 87%] Built target awh-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/simulationsignal.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/fileioxdrserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroups.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroupscog.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 86%] Built target selection-test +[ 89%] Built target math-test cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/tngio.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask128.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/cstringutil.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_math.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/defaultinitializationallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_memory.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_integer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/treesupport.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/string_view.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/enumerationhelpers.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 87%] Built target fileio-test -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineparser.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp cd 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CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/fixedcapacityvector.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/expanded.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o 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/usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_memory.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroups.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 90%] Built target fileio-test cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreeserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_floatingpoint.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp -cd 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-I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 92%] Built target commandline-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/expanded.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/typetraits.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 94%] Built target math-test +[ 92%] Built target mdlib-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 94%] Built target simd-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 95%] Built target compat-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 96%] Built target simd-test +[ 96%] Built target commandline-test cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' @@ -104651,7 +104720,7 @@ 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession 1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (1 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput @@ -104663,12 +104732,12 @@ 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput -1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) -1: [----------] 10 tests from InteractiveTestHelperTest (3 ms total) +1: [----------] 10 tests from InteractiveTestHelperTest (1 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData @@ -104676,17 +104745,17 @@ 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData 1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks -1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (1 ms) +1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData 1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData -1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesVectorData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData 1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData -1: [ OK ] ReferenceDataTest.HandlesIncorrectData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType 1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData @@ -104698,7 +104767,7 @@ 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesAnys -1: [ OK ] ReferenceDataTest.HandlesAnys (1 ms) +1: [ OK ] ReferenceDataTest.HandlesAnys (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree 1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey @@ -104710,13 +104779,13 @@ 1: [ RUN ] ReferenceDataTest.HandlesAnysWithIncorrectType 1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile -1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) +1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings 1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace 1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings -1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (1 ms) +1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices @@ -104726,7 +104795,7 @@ 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds -1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (1 ms) +1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues 1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges @@ -104734,12 +104803,12 @@ 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) -1: [----------] 34 tests from ReferenceDataTest (7 ms total) +1: [----------] 34 tests from ReferenceDataTest (3 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues @@ -104777,13 +104846,13 @@ 1: [ RUN ] XvgTests.CheckExtra 1: [ OK ] XvgTests.CheckExtra (0 ms) 1: [ RUN ] XvgTests.ReadIncorrect -1: [ OK ] XvgTests.ReadIncorrect (1 ms) -1: [----------] 4 tests from XvgTests (2 ms total) +1: [ OK ] XvgTests.ReadIncorrect (0 ms) +1: [----------] 4 tests from XvgTests (0 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (13 ms total) +1: [==========] 59 tests from 5 test cases ran. (4 ms total) 1: [ PASSED ] 59 tests. - 1/30 Test #1: TestUtilsUnitTests ............... Passed 0.04 sec + 1/30 Test #1: TestUtilsUnitTests ............... Passed 0.02 sec test 2 Start 2: TestUtilsMpiUnitTests @@ -104793,13 +104862,13 @@ 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs -2: [ OK ] MpiSelfTest.Runs (0 ms) -2: [----------] 1 test from MpiSelfTest (0 ms total) +2: [ OK ] MpiSelfTest.Runs (1 ms) +2: [----------] 1 test from MpiSelfTest (1 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 1 test from 1 test case ran. (0 ms total) +2: [==========] 1 test from 1 test case ran. (1 ms total) 2: [ PASSED ] 1 test. - 2/30 Test #2: TestUtilsMpiUnitTests ............ Passed 0.04 sec + 2/30 Test #2: TestUtilsMpiUnitTests ............ Passed 0.03 sec test 3 Start 3: UtilityUnitTests @@ -104857,7 +104926,7 @@ 3: [ OK ] AllocatorTest/3.Move (0 ms) 3: [ RUN ] AllocatorTest/3.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/3.StatelessAllocatorUsesNoMemory (0 ms) -3: [----------] 5 tests from AllocatorTest/3 (1 ms total) +3: [----------] 5 tests from AllocatorTest/3 (0 ms total) 3: 3: [----------] 5 tests from AllocatorTest/4, where TypeParam = gmx::Allocator, gmx::AlignedAllocationPolicy> 3: [ RUN ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment @@ -104937,10 +105006,10 @@ 3: [ RUN ] ArrayRefTest/1.ConstructFromVectorWorks 3: [ OK ] ArrayRefTest/1.ConstructFromVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/1.ConstructFromNonConstVectorWorks -3: [ OK ] ArrayRefTest/1.ConstructFromNonConstVectorWorks (1 ms) +3: [ OK ] ArrayRefTest/1.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/1 (1 ms total) +3: [----------] 9 tests from ArrayRefTest/1 (0 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/2.MakeWithAssignmentWorks @@ -105003,7 +105072,7 @@ 3: [ OK ] ArrayRefTest/4.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/4 (0 ms total) +3: [----------] 9 tests from ArrayRefTest/4 (1 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/5, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/5.MakeWithAssignmentWorks @@ -105129,7 +105198,7 @@ 3: [ OK ] ArrayRefTest/10.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/10 (1 ms total) +3: [----------] 9 tests from ArrayRefTest/10 (0 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/11, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/11.MakeWithAssignmentWorks @@ -105297,7 +105366,7 @@ 3: [ OK ] ArrayRefTest/18.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/18 (1 ms total) +3: [----------] 9 tests from ArrayRefTest/18 (0 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/19, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/19.MakeWithAssignmentWorks @@ -105357,14 +105426,14 @@ 3: [ RUN ] FixedCapacityVectorTest.EmplaceBackWorks 3: [ OK ] FixedCapacityVectorTest.EmplaceBackWorks (0 ms) 3: [ RUN ] FixedCapacityVectorTest.AtThrows -3: [ OK ] FixedCapacityVectorTest.AtThrows (0 ms) +3: [ OK ] FixedCapacityVectorTest.AtThrows (1 ms) 3: [ RUN ] FixedCapacityVectorTest.IteratorWorks 3: [ OK ] FixedCapacityVectorTest.IteratorWorks (0 ms) 3: [ RUN ] FixedCapacityVectorTest.ReverseIteratorWorks 3: [ OK ] FixedCapacityVectorTest.ReverseIteratorWorks (0 ms) 3: [ RUN ] FixedCapacityVectorTest.ZeroCapacityWorks 3: [ OK ] FixedCapacityVectorTest.ZeroCapacityWorks (0 ms) -3: [----------] 9 tests from FixedCapacityVectorTest (0 ms total) +3: [----------] 9 tests from FixedCapacityVectorTest (1 ms total) 3: 3: [----------] 5 tests from InMemorySerializerTest 3: [ RUN ] InMemorySerializerTest.Roundtrip @@ -105381,14 +105450,14 @@ 3: 3: [----------] 4 tests from KeyValueTreeSerializerTest 3: [ RUN ] KeyValueTreeSerializerTest.EmptyTree -3: [ OK ] KeyValueTreeSerializerTest.EmptyTree (1 ms) +3: [ OK ] KeyValueTreeSerializerTest.EmptyTree (0 ms) 3: [ RUN ] KeyValueTreeSerializerTest.SimpleObject 3: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms) 3: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays 3: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) 3: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects 3: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) -3: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) +3: [----------] 4 tests from KeyValueTreeSerializerTest (0 ms total) 3: 3: [----------] 6 tests from TreeValueTransformTest 3: [ RUN ] TreeValueTransformTest.SimpleTransforms @@ -105398,12 +105467,12 @@ 3: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject 3: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (0 ms) 3: [ RUN ] TreeValueTransformTest.ObjectFromString -3: [ OK ] TreeValueTransformTest.ObjectFromString (1 ms) +3: [ OK ] TreeValueTransformTest.ObjectFromString (0 ms) 3: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings 3: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 3: [ RUN ] TreeValueTransformTest.ScopedTransformRules 3: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) -3: [----------] 6 tests from TreeValueTransformTest (1 ms total) +3: [----------] 6 tests from TreeValueTransformTest (0 ms total) 3: 3: [----------] 1 test from TreeValueTransformErrorTest 3: [ RUN ] TreeValueTransformErrorTest.ConversionError @@ -105440,12 +105509,12 @@ 3: 3: [----------] 3 tests from MutexTaskTest 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock -3: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (1 ms) +3: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (3 ms) 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread 3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms) 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) -3: [----------] 3 tests from MutexTaskTest (1 ms total) +3: [----------] 3 tests from MutexTaskTest (4 ms total) 3: 3: [----------] 2 tests from PathTest 3: [ RUN ] PathTest.StripSourcePrefixWorks @@ -105480,7 +105549,7 @@ 3: [ OK ] StringUtilityTest.CanCompareCaseInsensitive (0 ms) 3: [ RUN ] StringUtilityTest.CanCompareCaseInsensitiveInLength 3: [ OK ] StringUtilityTest.CanCompareCaseInsensitiveInLength (0 ms) -3: [----------] 9 tests from StringUtilityTest (1 ms total) +3: [----------] 9 tests from StringUtilityTest (0 ms total) 3: 3: [----------] 2 tests from FormatStringTest 3: [ RUN ] FormatStringTest.HandlesBasicFormatting @@ -105529,7 +105598,7 @@ 3: [ RUN ] TextLineWrapperTest.WrapsCorrectly 3: [ OK ] TextLineWrapperTest.WrapsCorrectly (0 ms) 3: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks -3: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks (1 ms) +3: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks (0 ms) 3: [ RUN ] TextLineWrapperTest.HandlesIndent 3: [ OK ] TextLineWrapperTest.HandlesIndent (0 ms) 3: [ RUN ] TextLineWrapperTest.HandlesIndentWithEmptyLines @@ -105540,7 +105609,7 @@ 3: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) 3: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace 3: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms) -3: [----------] 10 tests from TextLineWrapperTest (1 ms total) +3: [----------] 10 tests from TextLineWrapperTest (0 ms total) 3: 3: [----------] 6 tests from TextWriterTest 3: [ RUN ] TextWriterTest.WritesLines @@ -105550,12 +105619,12 @@ 3: [ RUN ] TextWriterTest.WritesWrappedLines 3: [ OK ] TextWriterTest.WritesWrappedLines (0 ms) 3: [ RUN ] TextWriterTest.WritesLinesInPartsWithWrapper -3: [ OK ] TextWriterTest.WritesLinesInPartsWithWrapper (0 ms) +3: [ OK ] TextWriterTest.WritesLinesInPartsWithWrapper (3 ms) 3: [ RUN ] TextWriterTest.TracksNewlines 3: [ OK ] TextWriterTest.TracksNewlines (0 ms) 3: [ RUN ] TextWriterTest.PreservesTrailingWhitespace 3: [ OK ] TextWriterTest.PreservesTrailingWhitespace (0 ms) -3: [----------] 6 tests from TextWriterTest (0 ms total) +3: [----------] 6 tests from TextWriterTest (3 ms total) 3: 3: [----------] 1 test from TypeTraitsTest 3: [ RUN ] TypeTraitsTest.IsIntegralConstant @@ -105602,7 +105671,7 @@ 3: [ OK ] BitmaskTest64_10_42/BitmaskTest64.ToHex/0 (0 ms) 3: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.ToHex/1 3: [ OK ] BitmaskTest64_10_42/BitmaskTest64.ToHex/1 (0 ms) -3: [----------] 12 tests from BitmaskTest64_10_42/BitmaskTest64 (1 ms total) +3: [----------] 12 tests from BitmaskTest64_10_42/BitmaskTest64 (0 ms total) 3: 3: [----------] 12 tests from BitmaskTest128_9_78/BitmaskTest128 3: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 @@ -105633,24 +105702,24 @@ 3: 3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (0 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (3 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (2 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (1 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (2 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (3 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) -3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (1 ms total) +3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (10 ms total) 3: 3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 @@ -105670,9 +105739,9 @@ 3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (0 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 347 tests from 56 test cases ran. (12 ms total) +3: [==========] 347 tests from 56 test cases ran. (20 ms total) 3: [ PASSED ] 347 tests. - 3/30 Test #3: UtilityUnitTests ................. Passed 0.05 sec + 3/30 Test #3: UtilityUnitTests ................. Passed 0.04 sec test 4 Start 4: UtilityMpiUnitTests @@ -105682,15 +105751,15 @@ 4: [----------] Global test environment set-up. 4: [----------] 2 tests from PhysicalNodeCommunicatorTest 4: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct -4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (0 ms) +4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (22 ms) 4: [ RUN ] PhysicalNodeCommunicatorTest.CanCallBarrier -4: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (1 ms) -4: [----------] 2 tests from PhysicalNodeCommunicatorTest (1 ms total) +4: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (0 ms) +4: [----------] 2 tests from PhysicalNodeCommunicatorTest (23 ms total) 4: 4: [----------] Global test environment tear-down -4: [==========] 2 tests from 1 test case ran. (1 ms total) +4: [==========] 2 tests from 1 test case ran. (23 ms total) 4: [ PASSED ] 2 tests. - 4/30 Test #4: UtilityMpiUnitTests .............. Passed 0.04 sec + 4/30 Test #4: UtilityMpiUnitTests .............. Passed 0.11 sec test 5 Start 5: MdlibUnitTest @@ -105705,10 +105774,10 @@ 5: 5: [----------] 2 tests from PrEbinTest 5: [ RUN ] PrEbinTest.HandlesAverages -5: [ OK ] PrEbinTest.HandlesAverages (0 ms) +5: [ OK ] PrEbinTest.HandlesAverages (1 ms) 5: [ RUN ] PrEbinTest.HandlesEmptyAverages 5: [ OK ] PrEbinTest.HandlesEmptyAverages (0 ms) -5: [----------] 2 tests from PrEbinTest (0 ms total) +5: [----------] 2 tests from PrEbinTest (1 ms total) 5: 5: [----------] 4 tests from ShakeTest 5: [ RUN ] ShakeTest.ConstrainsOneBond @@ -105724,7 +105793,7 @@ 5: [----------] 1 test from NullSignalTest 5: [ RUN ] NullSignalTest.NullSignallerWorks 5: [ OK ] NullSignalTest.NullSignallerWorks (0 ms) -5: [----------] 1 test from NullSignalTest (1 ms total) +5: [----------] 1 test from NullSignalTest (0 ms total) 5: 5: [----------] 7 tests from SignalTest 5: [ RUN ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace @@ -105766,16 +105835,16 @@ 5: 5: [----------] 1 test from UpdateGroupsCog 5: [ RUN ] UpdateGroupsCog.ComputesCogs -5: [ OK ] UpdateGroupsCog.ComputesCogs (1 ms) -5: [----------] 1 test from UpdateGroupsCog (1 ms total) +5: [ OK ] UpdateGroupsCog.ComputesCogs (0 ms) +5: [----------] 1 test from UpdateGroupsCog (0 ms total) 5: 5: [----------] 84 tests from WithParameters/ConstraintsTest 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/0 -5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/0 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/0 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/1 5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/1 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/2 -5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/2 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/2 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/3 5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/3 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TwoDisjointConstraints/0 @@ -105841,7 +105910,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/10 5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/10 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/11 -5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/11 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/11 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/12 5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/12 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/13 @@ -105909,7 +105978,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/8 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/8 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/9 -5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/9 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/9 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/10 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/10 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/11 @@ -105938,42 +106007,42 @@ 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/22 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 (0 ms) -5: [----------] 84 tests from WithParameters/ConstraintsTest (5 ms total) +5: [----------] 84 tests from WithParameters/ConstraintsTest (2 ms total) 5: 5: [----------] 11 tests from WithParameters/EnergyOutputTest 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/0 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_0.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/0 (3 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/0 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/1 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_1.edr as single precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/1 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/2 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_2.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/3 5: [ OK ] WithParameters/EnergyOutputTest.CheckOutput/3 (0 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/4 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_4.edr as single precision energy file -5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (11 ms) +5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (4 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/5 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_5.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/6 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_6.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/6 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/6 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/7 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_7.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/8 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_8.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/8 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/8 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/9 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_9.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/9 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/9 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/10 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_10.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/10 (2 ms) -5: [----------] 11 tests from WithParameters/EnergyOutputTest (35 ms total) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/10 (1 ms) +5: [----------] 11 tests from WithParameters/EnergyOutputTest (14 ms total) 5: 5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/0 @@ -105985,7 +106054,7 @@ 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/3 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/3 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/4 -5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/4 (1 ms) +5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/4 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/5 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/5 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/6 @@ -106024,7 +106093,7 @@ 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/6 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/7 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/7 (0 ms) -5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple (1 ms total) +5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple (0 ms total) 5: 5: [----------] 14 tests from RegressionTests/CalculateAcceptanceWeightRangeRegression 5: [ RUN ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/0 @@ -106059,11 +106128,11 @@ 5: 5: [----------] 16 tests from WithParameters/LeapFrogTest 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/0 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/0 (0 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/0 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/1 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/1 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/2 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/2 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/2 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/3 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/3 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/4 @@ -106071,7 +106140,7 @@ 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/5 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/5 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/6 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (4 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/7 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/7 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/8 @@ -106079,26 +106148,26 @@ 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/9 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/9 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/10 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/10 (2 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/10 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/11 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/11 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/12 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/12 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/13 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/13 (2 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/13 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/14 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/14 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/14 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/15 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/15 (1 ms) -5: [----------] 16 tests from WithParameters/LeapFrogTest (18 ms total) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/15 (0 ms) +5: [----------] 16 tests from WithParameters/LeapFrogTest (10 ms total) 5: 5: [----------] 13 tests from WithParameters/SettleTest 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/3 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/3 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/4 @@ -106106,25 +106175,25 @@ 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/5 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/6 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/7 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (1 ms) -5: [----------] 13 tests from WithParameters/SettleTest (6 ms total) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (0 ms) +5: [----------] 13 tests from WithParameters/SettleTest (4 ms total) 5: 5: [----------] Global test environment tear-down -5: [==========] 187 tests from 13 test cases ran. (67 ms total) +5: [==========] 187 tests from 13 test cases ran. (31 ms total) 5: [ PASSED ] 187 tests. - 5/30 Test #5: MdlibUnitTest .................... Passed 0.10 sec + 5/30 Test #5: MdlibUnitTest .................... Passed 0.07 sec test 6 Start 6: AppliedForcesUnitTest @@ -106156,7 +106225,7 @@ 6: [ OK ] DensityFittingOptionsTest.KvtToInternal (0 ms) 6: [ RUN ] DensityFittingOptionsTest.RoundTripForInternalsIsIdempotent 6: [ OK ] DensityFittingOptionsTest.RoundTripForInternalsIsIdempotent (0 ms) -6: [----------] 8 tests from DensityFittingOptionsTest (1 ms total) +6: [----------] 8 tests from DensityFittingOptionsTest (0 ms total) 6: 6: [----------] 7 tests from DensityFittingAmplitudeLookupTest 6: [ RUN ] DensityFittingAmplitudeLookupTest.Unity @@ -106185,9 +106254,9 @@ 6: [----------] 3 tests from ElectricFieldTest (0 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 20 tests from 4 test cases ran. (3 ms total) +6: [==========] 20 tests from 4 test cases ran. (1 ms total) 6: [ PASSED ] 20 tests. - 6/30 Test #6: AppliedForcesUnitTest ............ Passed 0.03 sec + 6/30 Test #6: AppliedForcesUnitTest ............ Passed 0.02 sec test 7 Start 7: CommandLineUnitTests @@ -106197,18 +106266,18 @@ 7: [----------] Global test environment set-up. 7: [----------] 3 tests from CommandLineHelpModuleTest 7: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp -7: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) +7: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (0 ms) 7: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic 7: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 7: [ RUN ] CommandLineHelpModuleTest.ExportsHelp 7: [ OK ] CommandLineHelpModuleTest.ExportsHelp (1 ms) -7: [----------] 3 tests from CommandLineHelpModuleTest (2 ms total) +7: [----------] 3 tests from CommandLineHelpModuleTest (1 ms total) 7: 7: [----------] 7 tests from CommandLineHelpWriterTest 7: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes 7: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables -7: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (1 ms) +7: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions 7: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions @@ -106219,11 +106288,11 @@ 7: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesKnownIssues 7: [ OK ] CommandLineHelpWriterTest.HandlesKnownIssues (0 ms) -7: [----------] 7 tests from CommandLineHelpWriterTest (1 ms total) +7: [----------] 7 tests from CommandLineHelpWriterTest (0 ms total) 7: 7: [----------] 6 tests from CommandLineModuleManagerTest 7: [ RUN ] CommandLineModuleManagerTest.RunsModule -7: [ OK ] CommandLineModuleManagerTest.RunsModule (1 ms) +7: [ OK ] CommandLineModuleManagerTest.RunsModule (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet @@ -106234,7 +106303,7 @@ 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 7: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) -7: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) +7: [----------] 6 tests from CommandLineModuleManagerTest (0 ms total) 7: 7: [----------] 13 tests from CommandLineParserTest 7: [ RUN ] CommandLineParserTest.HandlesSingleValues @@ -106244,7 +106313,7 @@ 7: [ RUN ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument 7: [ OK ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument (0 ms) 7: [ RUN ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument -7: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (1 ms) +7: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (0 ms) 7: [ RUN ] CommandLineParserTest.HandlesNegativeNumbers 7: [ OK ] CommandLineParserTest.HandlesNegativeNumbers (0 ms) 7: [ RUN ] CommandLineParserTest.HandlesString @@ -106271,14 +106340,14 @@ 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithRelativePath 7: [ OK ] CommandLineProgramContextTest.FindsBinaryWithRelativePath (0 ms) 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromPath -7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromPath (1 ms) +7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromPath (0 ms) 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory 7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory (0 ms) 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink 7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (0 ms) 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink 7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms) -7: [----------] 6 tests from CommandLineProgramContextTest (1 ms total) +7: [----------] 6 tests from CommandLineProgramContextTest (0 ms total) 7: 7: [----------] 3 tests from OutputNamesTest 7: [ RUN ] OutputNamesTest.CanBeSuffixed @@ -106319,9 +106388,9 @@ 7: [ RUN ] ParseCommonArgsTest.HandlesNonExistentInputFiles 7: [ OK ] ParseCommonArgsTest.HandlesNonExistentInputFiles (0 ms) 7: [ RUN ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles -7: [ OK ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles (1 ms) +7: [ OK ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles (0 ms) 7: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified -7: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms) +7: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (1 ms) 7: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles 7: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (0 ms) 7: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension @@ -106329,15 +106398,15 @@ 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile 7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (0 ms) 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName -7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) +7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (0 ms) 7: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 7: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) -7: [----------] 21 tests from ParseCommonArgsTest (2 ms total) +7: [----------] 21 tests from ParseCommonArgsTest (1 ms total) 7: 7: [----------] Global test environment tear-down -7: [==========] 59 tests from 7 test cases ran. (8 ms total) +7: [==========] 59 tests from 7 test cases ran. (3 ms total) 7: [ PASSED ] 59 tests. - 7/30 Test #7: CommandLineUnitTests ............. Passed 0.04 sec + 7/30 Test #7: CommandLineUnitTests ............. Passed 0.02 sec test 8 Start 8: DomDecTests @@ -106372,7 +106441,7 @@ 8: [----------] Global test environment tear-down 8: [==========] 9 tests from 2 test cases ran. (0 ms total) 8: [ PASSED ] 9 tests. - 8/30 Test #8: DomDecTests ...................... Passed 0.02 sec + 8/30 Test #8: DomDecTests ...................... Passed 0.01 sec test 9 Start 9: EwaldUnitTests @@ -106388,61 +106457,61 @@ 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (3 ms) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (1 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) -9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (4 ms total) +9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (2 ms total) 9: 9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (0 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (5 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (0 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (0 ms) -9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (35 ms total) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (1 ms) +9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (18 ms total) 9: 9: [----------] 144 tests from SaneInput/PmeGatherTest 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 @@ -106456,7 +106525,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 @@ -106466,9 +106535,9 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 @@ -106476,7 +106545,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 @@ -106484,11 +106553,11 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 @@ -106496,7 +106565,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 @@ -106504,11 +106573,11 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 @@ -106516,9 +106585,9 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 @@ -106530,17 +106599,17 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 @@ -106552,7 +106621,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 @@ -106562,7 +106631,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 @@ -106572,9 +106641,9 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 @@ -106582,7 +106651,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 @@ -106590,11 +106659,11 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 @@ -106606,9 +106675,9 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 @@ -106618,7 +106687,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 @@ -106626,7 +106695,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 @@ -106642,9 +106711,9 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 @@ -106654,7 +106723,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 @@ -106662,7 +106731,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 @@ -106678,11 +106747,11 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 @@ -106690,7 +106759,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 @@ -106700,9 +106769,9 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 @@ -106726,14 +106795,14 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (0 ms) -9: [----------] 144 tests from SaneInput/PmeGatherTest (26 ms total) +9: [----------] 144 tests from SaneInput/PmeGatherTest (16 ms total) 9: 9: [----------] 16 tests from SaneInput/PmeSolveTest 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 @@ -106747,17 +106816,17 @@ 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 @@ -106767,31 +106836,31 @@ 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (0 ms) -9: [----------] 16 tests from SaneInput/PmeSolveTest (8 ms total) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (1 ms) +9: [----------] 16 tests from SaneInput/PmeSolveTest (7 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) 9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (2 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (0 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 @@ -106801,20 +106870,20 @@ 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (0 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (0 ms) -9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (4 ms total) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) +9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (3 ms total) 9: 9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 @@ -106824,11 +106893,11 @@ 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 @@ -106836,47 +106905,47 @@ 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) -9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (7 ms total) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (0 ms) +9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (5 ms total) 9: 9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (0 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (0 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (0 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (0 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (0 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (0 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (0 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (0 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (0 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (1 ms) -9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (7 ms total) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (0 ms) +9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (6 ms total) 9: 9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (0 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (0 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (0 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (0 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 @@ -106888,9 +106957,9 @@ 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (0 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (0 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 @@ -106899,11 +106968,11 @@ 9: 9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 @@ -106915,19 +106984,19 @@ 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) 9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (24 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 257 tests from 10 test cases ran. (141 ms total) +9: [==========] 257 tests from 10 test cases ran. (111 ms total) 9: [ PASSED ] 257 tests. - 9/30 Test #9: EwaldUnitTests ................... Passed 0.19 sec + 9/30 Test #9: EwaldUnitTests ................... Passed 0.14 sec test 10 Start 10: FFTUnitTests @@ -106937,48 +107006,48 @@ 10: [----------] Global test environment set-up. 10: [----------] 2 tests from ManyFFTTest 10: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (6 ms) +10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (2 ms) 10: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (10 ms) -10: [----------] 2 tests from ManyFFTTest (17 ms total) +10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (4 ms) +10: [----------] 2 tests from ManyFFTTest (6 ms total) 10: 10: [----------] 1 test from FFTTest 10: [ RUN ] FFTTest.Real2DLength18_15Test -10: [ OK ] FFTTest.Real2DLength18_15Test (4 ms) -10: [----------] 1 test from FFTTest (4 ms total) +10: [ OK ] FFTTest.Real2DLength18_15Test (1 ms) +10: [----------] 1 test from FFTTest (1 ms total) 10: 10: [----------] 1 test from FFFTest3D 10: [ RUN ] FFFTest3D.Real5_6_9 -10: [ OK ] FFFTest3D.Real5_6_9 (2 ms) -10: [----------] 1 test from FFFTest3D (3 ms total) +10: [ OK ] FFFTest3D.Real5_6_9 (1 ms) +10: [----------] 1 test from FFFTest3D (2 ms total) 10: 10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (3 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (5 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (3 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (7 ms) -10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (20 ms total) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (3 ms) +10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (8 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 14 tests from 4 test cases ran. (45 ms total) +10: [==========] 14 tests from 4 test cases ran. (17 ms total) 10: [ PASSED ] 14 tests. -10/30 Test #10: FFTUnitTests ..................... Passed 0.07 sec +10/30 Test #10: FFTUnitTests ..................... Passed 0.03 sec test 11 Start 11: GpuUtilsUnitTests @@ -107056,10 +107125,10 @@ 11: [ RUN ] HostAllocatorTestNoMem/0.MoveConstruction 11: [ OK ] HostAllocatorTestNoMem/0.MoveConstruction (0 ms) 11: [ RUN ] HostAllocatorTestNoMem/0.Swap -11: [ OK ] HostAllocatorTestNoMem/0.Swap (0 ms) +11: [ OK ] HostAllocatorTestNoMem/0.Swap (1 ms) 11: [ RUN ] HostAllocatorTestNoMem/0.Comparison 11: [ OK ] HostAllocatorTestNoMem/0.Comparison (0 ms) -11: [----------] 5 tests from HostAllocatorTestNoMem/0 (0 ms total) +11: [----------] 5 tests from HostAllocatorTestNoMem/0 (1 ms total) 11: 11: [----------] 5 tests from HostAllocatorTestNoMem/1, where TypeParam = float 11: [ RUN ] HostAllocatorTestNoMem/1.CreateVector @@ -107173,7 +107242,7 @@ 11: [----------] Global test environment tear-down 11: [==========] 62 tests from 20 test cases ran. (1 ms total) 11: [ PASSED ] 62 tests. -11/30 Test #11: GpuUtilsUnitTests ................ Passed 0.03 sec +11/30 Test #11: GpuUtilsUnitTests ................ Passed 0.02 sec test 12 Start 12: HardwareUnitTests @@ -107183,19 +107252,19 @@ 12: [----------] Global test environment set-up. 12: [----------] 4 tests from HardwareTopologyTest 12: [ RUN ] HardwareTopologyTest.Execute -12: [ OK ] HardwareTopologyTest.Execute (13 ms) +12: [ OK ] HardwareTopologyTest.Execute (7 ms) 12: [ RUN ] HardwareTopologyTest.HwlocExecute -12: [ OK ] HardwareTopologyTest.HwlocExecute (12 ms) +12: [ OK ] HardwareTopologyTest.HwlocExecute (6 ms) 12: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency -12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (12 ms) +12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (7 ms) 12: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (10 ms) -12: [----------] 4 tests from HardwareTopologyTest (48 ms total) +12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (8 ms) +12: [----------] 4 tests from HardwareTopologyTest (28 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 4 tests from 1 test case ran. (49 ms total) +12: [==========] 4 tests from 1 test case ran. (28 ms total) 12: [ PASSED ] 4 tests. -12/30 Test #12: HardwareUnitTests ................ Passed 0.07 sec +12/30 Test #12: HardwareUnitTests ................ Passed 0.04 sec test 13 Start 13: MathUnitTests @@ -107215,10 +107284,10 @@ 13: 13: [----------] 2 tests from ArrayRefWithPaddingTest/0, where TypeParam = gmx::ArrayRefWithPadding 13: [ RUN ] ArrayRefWithPaddingTest/0.AssignFromPaddedVectorWorks -13: [ OK ] ArrayRefWithPaddingTest/0.AssignFromPaddedVectorWorks (1 ms) +13: [ OK ] ArrayRefWithPaddingTest/0.AssignFromPaddedVectorWorks (0 ms) 13: [ RUN ] ArrayRefWithPaddingTest/0.ConstructFromPointersWorks 13: [ OK ] ArrayRefWithPaddingTest/0.ConstructFromPointersWorks (0 ms) -13: [----------] 2 tests from ArrayRefWithPaddingTest/0 (1 ms total) +13: [----------] 2 tests from ArrayRefWithPaddingTest/0 (0 ms total) 13: 13: [----------] 2 tests from ArrayRefWithPaddingTest/1, where TypeParam = gmx::ArrayRefWithPadding 13: [ RUN ] ArrayRefWithPaddingTest/1.AssignFromPaddedVectorWorks @@ -107236,7 +107305,7 @@ 13: 13: [----------] 8 tests from TranslateAndScaleTest 13: [ RUN ] TranslateAndScaleTest.identityTransformation -13: [ OK ] TranslateAndScaleTest.identityTransformation (0 ms) +13: [ OK ] TranslateAndScaleTest.identityTransformation (1 ms) 13: [ RUN ] TranslateAndScaleTest.translationWithIdentityScaling 13: [ OK ] TranslateAndScaleTest.translationWithIdentityScaling (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingWithZeroTranslation @@ -107251,11 +107320,11 @@ 13: [ OK ] TranslateAndScaleTest.scalingInverseNoZero (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingInverseWithOneScaleDimensionZero 13: [ OK ] TranslateAndScaleTest.scalingInverseWithOneScaleDimensionZero (0 ms) -13: [----------] 8 tests from TranslateAndScaleTest (0 ms total) +13: [----------] 8 tests from TranslateAndScaleTest (1 ms total) 13: 13: [----------] 12 tests from DensitySimilarityTest 13: [ RUN ] DensitySimilarityTest.InnerProductIsCorrect -13: [ OK ] DensitySimilarityTest.InnerProductIsCorrect (1 ms) +13: [ OK ] DensitySimilarityTest.InnerProductIsCorrect (0 ms) 13: [ RUN ] DensitySimilarityTest.InnerProductGradientIsCorrect 13: [ OK ] DensitySimilarityTest.InnerProductGradientIsCorrect (0 ms) 13: [ RUN ] DensitySimilarityTest.GradientThrowsIfDensitiesDontMatch @@ -107269,16 +107338,16 @@ 13: [ RUN ] DensitySimilarityTest.RelativeEntropyIsCorrect 13: [ OK ] DensitySimilarityTest.RelativeEntropyIsCorrect (0 ms) 13: [ RUN ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect -13: [ OK ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect (1 ms) +13: [ OK ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect (0 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsOne -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (20 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (9 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (18 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (8 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (20 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (11 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect 13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect (0 ms) -13: [----------] 12 tests from DensitySimilarityTest (60 ms total) +13: [----------] 12 tests from DensitySimilarityTest (28 ms total) 13: 13: [----------] 6 tests from StructureSimilarityTest 13: [ RUN ] StructureSimilarityTest.StructureComparedToSelfHasZeroRMSD @@ -107357,7 +107426,7 @@ 13: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 13: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble 13: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) -13: [----------] 21 tests from FunctionTest (1 ms total) +13: [----------] 21 tests from FunctionTest (0 ms total) 13: 13: [----------] 4 tests from GaussianOn1DLattice 13: [ RUN ] GaussianOn1DLattice.sumsCloseToOne @@ -107386,10 +107455,10 @@ 13: [ RUN ] GaussTransformTest.complementaryGaussAddToZero 13: [ OK ] GaussTransformTest.complementaryGaussAddToZero (0 ms) 13: [ RUN ] GaussTransformTest.centerGaussianInCubeHasExpectedValues -13: [ OK ] GaussTransformTest.centerGaussianInCubeHasExpectedValues (0 ms) +13: [ OK ] GaussTransformTest.centerGaussianInCubeHasExpectedValues (1 ms) 13: [ RUN ] GaussTransformTest.view 13: [ OK ] GaussTransformTest.view (0 ms) -13: [----------] 9 tests from GaussTransformTest (0 ms total) +13: [----------] 9 tests from GaussTransformTest (1 ms total) 13: 13: [----------] 3 tests from DensityFittingForce 13: [ RUN ] DensityFittingForce.isZeroWhenMatchingDensity @@ -107412,7 +107481,7 @@ 13: [ OK ] InvertBoxMatrixTest.IdentityIsImpotent (0 ms) 13: [ RUN ] InvertBoxMatrixTest.ComputesInverseInPlace 13: [ OK ] InvertBoxMatrixTest.ComputesInverseInPlace (0 ms) -13: [----------] 2 tests from InvertBoxMatrixTest (1 ms total) +13: [----------] 2 tests from InvertBoxMatrixTest (0 ms total) 13: 13: [----------] 15 tests from MatrixTest 13: [ RUN ] MatrixTest.canSetFromArray @@ -107586,7 +107655,7 @@ 13: [ OK ] PaddedVectorTest/6.CanMoveAssign (0 ms) 13: [ RUN ] PaddedVectorTest/6.CanSwap 13: [ OK ] PaddedVectorTest/6.CanSwap (0 ms) -13: [----------] 4 tests from PaddedVectorTest/6 (1 ms total) +13: [----------] 4 tests from PaddedVectorTest/6 (0 ms total) 13: 13: [----------] 4 tests from PaddedVectorTest/7, where TypeParam = gmx::Allocator 13: [ RUN ] PaddedVectorTest/7.ConstructsResizesAndReserves @@ -107696,12 +107765,12 @@ 13: [ OK ] RVecTest.MoveConstructorWorks (0 ms) 13: [ RUN ] RVecTest.MoveAssignmentWorks 13: [ OK ] RVecTest.MoveAssignmentWorks (0 ms) -13: [----------] 37 tests from RVecTest (0 ms total) +13: [----------] 37 tests from RVecTest (1 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 204 tests from 29 test cases ran. (65 ms total) +13: [==========] 204 tests from 29 test cases ran. (32 ms total) 13: [ PASSED ] 204 tests. -13/30 Test #13: MathUnitTests .................... Passed 0.09 sec +13/30 Test #13: MathUnitTests .................... Passed 0.05 sec test 14 Start 14: MdrunUtilityUnitTests @@ -107721,7 +107790,7 @@ 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads 14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware -14: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (1 ms) +14: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 14: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset @@ -107740,7 +107809,7 @@ 14: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto 14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced -14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (0 ms) +14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (1 ms) 14: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads 14: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing @@ -107761,9 +107830,9 @@ 15: [----------] Global test environment set-up. 15: [----------] 6 tests from ThreadAffinityMultiRankTest 15: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode -15: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (1 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (0 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride -15: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (1 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (0 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes 15: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (0 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled @@ -107771,30 +107840,30 @@ 15: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto 15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (0 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce -15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (1 ms) -15: [----------] 6 tests from ThreadAffinityMultiRankTest (3 ms total) +15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (0 ms) +15: [----------] 6 tests from ThreadAffinityMultiRankTest (0 ms total) 15: 15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly 15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (0 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (0 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (1 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (0 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly 15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (0 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly 15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (0 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (0 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (1 ms) -15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (3 ms total) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (0 ms) +15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (2 ms total) 15: 15: [----------] Global test environment tear-down -15: [==========] 13 tests from 2 test cases ran. (6 ms total) +15: [==========] 13 tests from 2 test cases ran. (3 ms total) 15: [ PASSED ] 13 tests. -15/30 Test #15: MdrunUtilityMpiUnitTests ......... Passed 0.05 sec +15/30 Test #15: MdrunUtilityMpiUnitTests ......... Passed 0.10 sec test 16 Start 16: MDSpanTests @@ -107865,12 +107934,12 @@ 16: [ RUN ] MdSpanTest/0.Extents 16: [ OK ] MdSpanTest/0.Extents (0 ms) 16: [ RUN ] MdSpanTest/0.Strides -16: [ OK ] MdSpanTest/0.Strides (1 ms) +16: [ OK ] MdSpanTest/0.Strides (0 ms) 16: [ RUN ] MdSpanTest/0.Properties 16: [ OK ] MdSpanTest/0.Properties (0 ms) 16: [ RUN ] MdSpanTest/0.Operator 16: [ OK ] MdSpanTest/0.Operator (0 ms) -16: [----------] 6 tests from MdSpanTest/0 (1 ms total) +16: [----------] 6 tests from MdSpanTest/0 (0 ms total) 16: 16: [----------] 6 tests from MdSpanTest/1, where TypeParam = gmx::basic_mdspan, gmx::layout_right, gmx::accessor_basic > 16: [ RUN ] MdSpanTest/1.Rank @@ -107888,9 +107957,9 @@ 16: [----------] 6 tests from MdSpanTest/1 (0 ms total) 16: 16: [----------] Global test environment tear-down -16: [==========] 32 tests from 7 test cases ran. (1 ms total) +16: [==========] 32 tests from 7 test cases ran. (0 ms total) 16: [ PASSED ] 32 tests. -16/30 Test #16: MDSpanTests ...................... Passed 0.03 sec +16/30 Test #16: MDSpanTests ...................... Passed 0.01 sec test 17 Start 17: OnlineHelpUnitTests @@ -107919,8 +107988,8 @@ 17: [ RUN ] HelpManagerTest.HandlesSubTopics 17: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 17: [ RUN ] HelpManagerTest.HandlesInvalidTopics -17: [ OK ] HelpManagerTest.HandlesInvalidTopics (1 ms) -17: [----------] 3 tests from HelpManagerTest (1 ms total) +17: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) +17: [----------] 3 tests from HelpManagerTest (0 ms total) 17: 17: [----------] 2 tests from HelpTopicFormattingTest 17: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic @@ -107949,15 +108018,15 @@ 17: [ RUN ] HelpWriterContextTest.FormatsSimpleTable 17: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsGridTable -17: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) +17: [ OK ] HelpWriterContextTest.FormatsGridTable (1 ms) 17: [ RUN ] HelpWriterContextTest.FormatsTitles 17: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms) 17: [----------] 11 tests from HelpWriterContextTest (1 ms total) 17: 17: [----------] Global test environment tear-down -17: [==========] 22 tests from 4 test cases ran. (3 ms total) +17: [==========] 22 tests from 4 test cases ran. (1 ms total) 17: [ PASSED ] 22 tests. -17/30 Test #17: OnlineHelpUnitTests .............. Passed 0.03 sec +17/30 Test #17: OnlineHelpUnitTests .............. Passed 0.01 sec test 18 Start 18: OptionsUnitTests @@ -107973,10 +108042,10 @@ 18: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition 18: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) 18: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition -18: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (1 ms) +18: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (0 ms) 18: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues 18: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) -18: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) +18: [----------] 5 tests from AbstractOptionStorageTest (0 ms total) 18: 18: [----------] 8 tests from FileNameOptionTest 18: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension @@ -108047,14 +108116,14 @@ 18: [ RUN ] OptionsAssignerTest.HandlesMissingValue 18: [ OK ] OptionsAssignerTest.HandlesMissingValue (0 ms) 18: [ RUN ] OptionsAssignerTest.HandlesExtraValue -18: [ OK ] OptionsAssignerTest.HandlesExtraValue (1 ms) +18: [ OK ] OptionsAssignerTest.HandlesExtraValue (0 ms) 18: [ RUN ] OptionsAssignerTest.HandlesGroups 18: [ OK ] OptionsAssignerTest.HandlesGroups (0 ms) 18: [ RUN ] OptionsAssignerTest.HandlesSections 18: [ OK ] OptionsAssignerTest.HandlesSections (0 ms) 18: [ RUN ] OptionsAssignerTest.HandlesMultipleSources 18: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms) -18: [----------] 9 tests from OptionsAssignerTest (1 ms total) +18: [----------] 9 tests from OptionsAssignerTest (0 ms total) 18: 18: [----------] 4 tests from OptionsAssignerBooleanTest 18: [ RUN ] OptionsAssignerBooleanTest.StoresYesValue @@ -108128,7 +108197,7 @@ 18: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable (0 ms) 18: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector 18: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector (0 ms) -18: [----------] 9 tests from OptionsAssignerStringTest (1 ms total) +18: [----------] 9 tests from OptionsAssignerStringTest (0 ms total) 18: 18: [----------] 6 tests from OptionsAssignerEnumTest 18: [ RUN ] OptionsAssignerEnumTest.StoresSingleValue @@ -108162,7 +108231,7 @@ 18: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (0 ms) 18: [ RUN ] RepeatingOptionSectionTest.HandlesNestedSections 18: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (0 ms) -18: [----------] 8 tests from RepeatingOptionSectionTest (0 ms total) +18: [----------] 8 tests from RepeatingOptionSectionTest (1 ms total) 18: 18: [----------] 1 test from TimeUnitManagerTest 18: [ RUN ] TimeUnitManagerTest.BasicOperations @@ -108207,7 +108276,7 @@ 18: 18: [----------] 6 tests from TreeValueSupportAdjustTest 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues -18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (1 ms) +18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues 18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues @@ -108218,7 +108287,7 @@ 18: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.OrdersValues 18: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) -18: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total) +18: [----------] 6 tests from TreeValueSupportAdjustTest (0 ms total) 18: 18: [----------] 8 tests from TreeValueSupportTest 18: [ RUN ] TreeValueSupportTest.SupportsBooleanOption @@ -108228,7 +108297,7 @@ 18: [ RUN ] TreeValueSupportTest.SupportsInt64Option 18: [ OK ] TreeValueSupportTest.SupportsInt64Option (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsStringOption -18: [ OK ] TreeValueSupportTest.SupportsStringOption (1 ms) +18: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsFloatOption 18: [ OK ] TreeValueSupportTest.SupportsFloatOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsDoubleOption @@ -108237,12 +108306,12 @@ 18: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsEnumOption 18: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) -18: [----------] 8 tests from TreeValueSupportTest (1 ms total) +18: [----------] 8 tests from TreeValueSupportTest (0 ms total) 18: 18: [----------] Global test environment tear-down -18: [==========] 110 tests from 18 test cases ran. (6 ms total) +18: [==========] 110 tests from 18 test cases ran. (2 ms total) 18: [ PASSED ] 110 tests. -18/30 Test #18: OptionsUnitTests ................. Passed 0.04 sec +18/30 Test #18: OptionsUnitTests ................. Passed 0.02 sec test 19 Start 19: PbcutilUnitTest @@ -108252,8 +108321,8 @@ 19: [----------] Global test environment set-up. 19: [----------] 1 test from PbcTest 19: [ RUN ] PbcTest.CalcShiftsWorks -19: [ OK ] PbcTest.CalcShiftsWorks (1 ms) -19: [----------] 1 test from PbcTest (1 ms total) +19: [ OK ] PbcTest.CalcShiftsWorks (0 ms) +19: [----------] 1 test from PbcTest (0 ms total) 19: 19: [----------] 2 tests from PbcEnumsTest 19: [ RUN ] PbcEnumsTest.CenteringTypeNamesAreCorrect @@ -108263,9 +108332,9 @@ 19: [----------] 2 tests from PbcEnumsTest (0 ms total) 19: 19: [----------] Global test environment tear-down -19: [==========] 3 tests from 2 test cases ran. (1 ms total) +19: [==========] 3 tests from 2 test cases ran. (0 ms total) 19: [ PASSED ] 3 tests. -19/30 Test #19: PbcutilUnitTest .................. Passed 0.03 sec +19/30 Test #19: PbcutilUnitTest .................. Passed 0.01 sec test 20 Start 20: RandomUnitTests @@ -108328,8 +108397,8 @@ 20: 20: [----------] 1 test from TabulatedNormalDistributionTableTest 20: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties -20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (2 ms) -20: [----------] 1 test from TabulatedNormalDistributionTableTest (2 ms total) +20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (0 ms) +20: [----------] 1 test from TabulatedNormalDistributionTableTest (0 ms total) 20: 20: [----------] 6 tests from ThreeFry2x64Test 20: [ RUN ] ThreeFry2x64Test.Logical @@ -108389,12 +108458,12 @@ 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms) -20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) +20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (0 ms total) 20: 20: [----------] Global test environment tear-down -20: [==========] 44 tests from 10 test cases ran. (5 ms total) +20: [==========] 44 tests from 10 test cases ran. (2 ms total) 20: [ PASSED ] 44 tests. -20/30 Test #20: RandomUnitTests .................. Passed 0.04 sec +20/30 Test #20: RandomUnitTests .................. Passed 0.02 sec test 21 Start 21: RestraintTests @@ -108404,13 +108473,13 @@ 21: [----------] Global test environment set-up. 21: [----------] 1 test from RestraintManager 21: [ RUN ] RestraintManager.restraintList -21: [ OK ] RestraintManager.restraintList (1 ms) -21: [----------] 1 test from RestraintManager (1 ms total) +21: [ OK ] RestraintManager.restraintList (0 ms) +21: [----------] 1 test from RestraintManager (0 ms total) 21: 21: [----------] Global test environment tear-down -21: [==========] 1 test from 1 test case ran. (1 ms total) +21: [==========] 1 test from 1 test case ran. (0 ms total) 21: [ PASSED ] 1 test. -21/30 Test #21: RestraintTests ................... Passed 0.02 sec +21/30 Test #21: RestraintTests ................... Passed 0.01 sec test 22 Start 22: TableUnitTests @@ -108420,54 +108489,54 @@ 22: [----------] Global test environment set-up. 22: [----------] 10 tests from SplineTableTest/0, where TypeParam = gmx::QuadraticSplineTable 22: [ RUN ] SplineTableTest/0.HandlesIncorrectInput -22: [ OK ] SplineTableTest/0.HandlesIncorrectInput (2 ms) +22: [ OK ] SplineTableTest/0.HandlesIncorrectInput (0 ms) 22: [ RUN ] SplineTableTest/0.Sinc 22: [ OK ] SplineTableTest/0.Sinc (0 ms) 22: [ RUN ] SplineTableTest/0.LJ12 -22: [ OK ] SplineTableTest/0.LJ12 (13 ms) +22: [ OK ] SplineTableTest/0.LJ12 (5 ms) 22: [ RUN ] SplineTableTest/0.PmeCorrection -22: [ OK ] SplineTableTest/0.PmeCorrection (2 ms) +22: [ OK ] SplineTableTest/0.PmeCorrection (0 ms) 22: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput -22: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (0 ms) +22: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms) 22: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr -22: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (1 ms) +22: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (0 ms) 22: [ RUN ] SplineTableTest/0.TwoFunctions -22: [ OK ] SplineTableTest/0.TwoFunctions (18 ms) +22: [ OK ] SplineTableTest/0.TwoFunctions (10 ms) 22: [ RUN ] SplineTableTest/0.ThreeFunctions -22: [ OK ] SplineTableTest/0.ThreeFunctions (16 ms) +22: [ OK ] SplineTableTest/0.ThreeFunctions (9 ms) 22: [ RUN ] SplineTableTest/0.Simd -22: [ OK ] SplineTableTest/0.Simd (3 ms) +22: [ OK ] SplineTableTest/0.Simd (2 ms) 22: [ RUN ] SplineTableTest/0.SimdTwoFunctions -22: [ OK ] SplineTableTest/0.SimdTwoFunctions (12 ms) -22: [----------] 10 tests from SplineTableTest/0 (67 ms total) +22: [ OK ] SplineTableTest/0.SimdTwoFunctions (9 ms) +22: [----------] 10 tests from SplineTableTest/0 (38 ms total) 22: 22: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 22: [ RUN ] SplineTableTest/1.HandlesIncorrectInput 22: [ OK ] SplineTableTest/1.HandlesIncorrectInput (0 ms) 22: [ RUN ] SplineTableTest/1.Sinc -22: [ OK ] SplineTableTest/1.Sinc (1 ms) +22: [ OK ] SplineTableTest/1.Sinc (0 ms) 22: [ RUN ] SplineTableTest/1.LJ12 22: [ OK ] SplineTableTest/1.LJ12 (1 ms) 22: [ RUN ] SplineTableTest/1.PmeCorrection 22: [ OK ] SplineTableTest/1.PmeCorrection (0 ms) 22: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput -22: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (0 ms) +22: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) 22: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr -22: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (1 ms) +22: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (0 ms) 22: [ RUN ] SplineTableTest/1.TwoFunctions 22: [ OK ] SplineTableTest/1.TwoFunctions (1 ms) 22: [ RUN ] SplineTableTest/1.ThreeFunctions 22: [ OK ] SplineTableTest/1.ThreeFunctions (2 ms) 22: [ RUN ] SplineTableTest/1.Simd -22: [ OK ] SplineTableTest/1.Simd (1 ms) +22: [ OK ] SplineTableTest/1.Simd (0 ms) 22: [ RUN ] SplineTableTest/1.SimdTwoFunctions 22: [ OK ] SplineTableTest/1.SimdTwoFunctions (1 ms) -22: [----------] 10 tests from SplineTableTest/1 (8 ms total) +22: [----------] 10 tests from SplineTableTest/1 (6 ms total) 22: 22: [----------] Global test environment tear-down -22: [==========] 20 tests from 2 test cases ran. (75 ms total) +22: [==========] 20 tests from 2 test cases ran. (45 ms total) 22: [ PASSED ] 20 tests. -22/30 Test #22: TableUnitTests ................... Passed 0.10 sec +22/30 Test #22: TableUnitTests ................... Passed 0.06 sec test 23 Start 23: TaskAssignmentUnitTests @@ -108484,13 +108553,13 @@ 23: 23: [----------] 1 test from GpuIdAndAssignmentStringHandlingTest 23: [ RUN ] GpuIdAndAssignmentStringHandlingTest.InvalidInputsThrow -23: [ OK ] GpuIdAndAssignmentStringHandlingTest.InvalidInputsThrow (1 ms) -23: [----------] 1 test from GpuIdAndAssignmentStringHandlingTest (1 ms total) +23: [ OK ] GpuIdAndAssignmentStringHandlingTest.InvalidInputsThrow (0 ms) +23: [----------] 1 test from GpuIdAndAssignmentStringHandlingTest (0 ms total) 23: 23: [----------] Global test environment tear-down -23: [==========] 3 tests from 2 test cases ran. (1 ms total) +23: [==========] 3 tests from 2 test cases ran. (0 ms total) 23: [ PASSED ] 3 tests. -23/30 Test #23: TaskAssignmentUnitTests .......... Passed 0.03 sec +23/30 Test #23: TaskAssignmentUnitTests .......... Passed 0.01 sec test 24 Start 24: TopologyTest @@ -108509,10 +108578,10 @@ 24: 24: [----------] 2 tests from MtopTest 24: [ RUN ] MtopTest.RangeBasedLoop -24: [ OK ] MtopTest.RangeBasedLoop (0 ms) +24: [ OK ] MtopTest.RangeBasedLoop (1 ms) 24: [ RUN ] MtopTest.Operators 24: [ OK ] MtopTest.Operators (0 ms) -24: [----------] 2 tests from MtopTest (0 ms total) +24: [----------] 2 tests from MtopTest (1 ms total) 24: 24: [----------] 6 tests from SymtabTest 24: [ RUN ] SymtabTest.EmptyOnOpen @@ -108527,12 +108596,12 @@ 24: [ OK ] SymtabTest.AddLargeNumberOfEntries (0 ms) 24: [ RUN ] SymtabTest.NoDuplicatesInLargeTable 24: [ OK ] SymtabTest.NoDuplicatesInLargeTable (0 ms) -24: [----------] 6 tests from SymtabTest (1 ms total) +24: [----------] 6 tests from SymtabTest (0 ms total) 24: 24: [----------] Global test environment tear-down 24: [==========] 11 tests from 3 test cases ran. (1 ms total) 24: [ PASSED ] 11 tests. -24/30 Test #24: TopologyTest ..................... Passed 0.02 sec +24/30 Test #24: TopologyTest ..................... Passed 0.01 sec test 25 Start 25: PullTest @@ -108556,7 +108625,7 @@ 25: [----------] Global test environment tear-down 25: [==========] 5 tests from 1 test case ran. (0 ms total) 25: [ PASSED ] 5 tests. -25/30 Test #25: PullTest ......................... Passed 0.03 sec +25/30 Test #25: PullTest ......................... Passed 0.01 sec test 26 Start 26: AwhTest @@ -108566,13 +108635,13 @@ 26: [----------] Global test environment set-up. 26: [----------] 1 test from BiasTest 26: [ RUN ] BiasTest.DetectsCovering -26: [ OK ] BiasTest.DetectsCovering (1 ms) -26: [----------] 1 test from BiasTest (1 ms total) +26: [ OK ] BiasTest.DetectsCovering (0 ms) +26: [----------] 1 test from BiasTest (0 ms total) 26: 26: [----------] 1 test from gridTest 26: [ RUN ] gridTest.neighborhood -26: [ OK ] gridTest.neighborhood (2 ms) -26: [----------] 1 test from gridTest (2 ms total) +26: [ OK ] gridTest.neighborhood (1 ms) +26: [----------] 1 test from gridTest (1 ms total) 26: 26: [----------] 8 tests from WithParameters/BiasTest 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 @@ -108580,7 +108649,7 @@ 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (0 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 @@ -108591,19 +108660,19 @@ 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (0 ms) -26: [----------] 8 tests from WithParameters/BiasTest (4 ms total) +26: [----------] 8 tests from WithParameters/BiasTest (1 ms total) 26: 26: [----------] 2 tests from WithParameters/BiasStateTest 26: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 -26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (0 ms) +26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (1 ms) 26: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1 -26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (1 ms) +26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (0 ms) 26: [----------] 2 tests from WithParameters/BiasStateTest (1 ms total) 26: 26: [----------] Global test environment tear-down -26: [==========] 12 tests from 4 test cases ran. (8 ms total) +26: [==========] 12 tests from 4 test cases ran. (3 ms total) 26: [ PASSED ] 12 tests. -26/30 Test #26: AwhTest .......................... Passed 0.03 sec +26/30 Test #26: AwhTest .......................... Passed 0.02 sec test 27 Start 27: SimdUnitTests @@ -108722,7 +108791,7 @@ 27: [ OK ] SimdFloatingpointTest.cvtFloat2Double (0 ms) 27: [ RUN ] SimdFloatingpointTest.cvtDouble2Float 27: [ OK ] SimdFloatingpointTest.cvtDouble2Float (0 ms) -27: [----------] 42 tests from SimdFloatingpointTest (1 ms total) +27: [----------] 42 tests from SimdFloatingpointTest (0 ms total) 27: 27: [----------] 16 tests from SimdFloatingpointUtilTest 27: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose4 @@ -108778,83 +108847,83 @@ 27: [ RUN ] SimdMathTest.maskzInvsqrt 27: [ OK ] SimdMathTest.maskzInvsqrt (0 ms) 27: [ RUN ] SimdMathTest.invsqrtPair -27: [ OK ] SimdMathTest.invsqrtPair (1 ms) +27: [ OK ] SimdMathTest.invsqrtPair (0 ms) 27: [ RUN ] SimdMathTest.sqrt 27: [ OK ] SimdMathTest.sqrt (1 ms) 27: [ RUN ] SimdMathTest.sqrtUnsafe -27: [ OK ] SimdMathTest.sqrtUnsafe (1 ms) +27: [ OK ] SimdMathTest.sqrtUnsafe (0 ms) 27: [ RUN ] SimdMathTest.inv -27: [ OK ] SimdMathTest.inv (2 ms) +27: [ OK ] SimdMathTest.inv (0 ms) 27: [ RUN ] SimdMathTest.maskzInv 27: [ OK ] SimdMathTest.maskzInv (0 ms) 27: [ RUN ] SimdMathTest.cbrt 27: [ OK ] SimdMathTest.cbrt (1 ms) 27: [ RUN ] SimdMathTest.invcbrt -27: [ OK ] SimdMathTest.invcbrt (2 ms) +27: [ OK ] SimdMathTest.invcbrt (1 ms) 27: [ RUN ] SimdMathTest.log2 -27: [ OK ] SimdMathTest.log2 (1 ms) +27: [ OK ] SimdMathTest.log2 (0 ms) 27: [ RUN ] SimdMathTest.log 27: [ OK ] SimdMathTest.log (1 ms) 27: [ RUN ] SimdMathTest.exp2 -27: [ OK ] SimdMathTest.exp2 (2 ms) +27: [ OK ] SimdMathTest.exp2 (0 ms) 27: [ RUN ] SimdMathTest.exp2Unsafe 27: [ OK ] SimdMathTest.exp2Unsafe (0 ms) 27: [ RUN ] SimdMathTest.exp -27: [ OK ] SimdMathTest.exp (2 ms) +27: [ OK ] SimdMathTest.exp (1 ms) 27: [ RUN ] SimdMathTest.expUnsafe -27: [ OK ] SimdMathTest.expUnsafe (1 ms) +27: [ OK ] SimdMathTest.expUnsafe (0 ms) 27: [ RUN ] SimdMathTest.pow 27: [ OK ] SimdMathTest.pow (0 ms) 27: [ RUN ] SimdMathTest.powUnsafe 27: [ OK ] SimdMathTest.powUnsafe (0 ms) 27: [ RUN ] SimdMathTest.erf -27: [ OK ] SimdMathTest.erf (0 ms) +27: [ OK ] SimdMathTest.erf (1 ms) 27: [ RUN ] SimdMathTest.erfc -27: [ OK ] SimdMathTest.erfc (1 ms) +27: [ OK ] SimdMathTest.erfc (0 ms) 27: [ RUN ] SimdMathTest.sin -27: [ OK ] SimdMathTest.sin (1 ms) +27: [ OK ] SimdMathTest.sin (0 ms) 27: [ RUN ] SimdMathTest.cos 27: [ OK ] SimdMathTest.cos (1 ms) 27: [ RUN ] SimdMathTest.tan -27: [ OK ] SimdMathTest.tan (2 ms) +27: [ OK ] SimdMathTest.tan (0 ms) 27: [ RUN ] SimdMathTest.asin -27: [ OK ] SimdMathTest.asin (0 ms) +27: [ OK ] SimdMathTest.asin (1 ms) 27: [ RUN ] SimdMathTest.acos -27: [ OK ] SimdMathTest.acos (1 ms) +27: [ OK ] SimdMathTest.acos (0 ms) 27: [ RUN ] SimdMathTest.atan -27: [ OK ] SimdMathTest.atan (1 ms) +27: [ OK ] SimdMathTest.atan (0 ms) 27: [ RUN ] SimdMathTest.atan2 27: [ OK ] SimdMathTest.atan2 (0 ms) 27: [ RUN ] SimdMathTest.pmeForceCorrection -27: [ OK ] SimdMathTest.pmeForceCorrection (0 ms) +27: [ OK ] SimdMathTest.pmeForceCorrection (1 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrection 27: [ OK ] SimdMathTest.pmePotentialCorrection (0 ms) 27: [ RUN ] SimdMathTest.invsqrtSingleAccuracy -27: [ OK ] SimdMathTest.invsqrtSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.invsqrtSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy -27: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracy -27: [ OK ] SimdMathTest.sqrtSingleAccuracy (0 ms) +27: [ OK ] SimdMathTest.sqrtSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe 27: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.invSingleAccuracy -27: [ OK ] SimdMathTest.invSingleAccuracy (2 ms) +27: [ OK ] SimdMathTest.invSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.cbrtSingleAccuracy 27: [ OK ] SimdMathTest.cbrtSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.invcbrtSingleAccuracy -27: [ OK ] SimdMathTest.invcbrtSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.invcbrtSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.log2SingleAccuracy -27: [ OK ] SimdMathTest.log2SingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.log2SingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.logSingleAccuracy 27: [ OK ] SimdMathTest.logSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracy -27: [ OK ] SimdMathTest.exp2SingleAccuracy (2 ms) +27: [ OK ] SimdMathTest.exp2SingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe 27: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracy 27: [ OK ] SimdMathTest.expSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe -27: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) +27: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.powSingleAccuracy 27: [ OK ] SimdMathTest.powSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.powSingleAccuracyUnsafe @@ -108862,17 +108931,17 @@ 27: [ RUN ] SimdMathTest.erfSingleAccuracy 27: [ OK ] SimdMathTest.erfSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.erfcSingleAccuracy -27: [ OK ] SimdMathTest.erfcSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.erfcSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.sinSingleAccuracy 27: [ OK ] SimdMathTest.sinSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.cosSingleAccuracy -27: [ OK ] SimdMathTest.cosSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.cosSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.tanSingleAccuracy 27: [ OK ] SimdMathTest.tanSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.asinSingleAccuracy 27: [ OK ] SimdMathTest.asinSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.acosSingleAccuracy -27: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.acosSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.atanSingleAccuracy 27: [ OK ] SimdMathTest.atanSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.atan2SingleAccuracy @@ -108880,8 +108949,8 @@ 27: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy 27: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy -27: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (1 ms) -27: [----------] 56 tests from SimdMathTest (42 ms total) +27: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) +27: [----------] 56 tests from SimdMathTest (19 ms total) 27: 27: [----------] 1 test from EmptyArrayRefTest 27: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -109007,7 +109076,7 @@ 27: [ RUN ] Simd4FloatingpointTest.fma 27: [ OK ] Simd4FloatingpointTest.fma (0 ms) 27: [ RUN ] Simd4FloatingpointTest.fms -27: [ OK ] Simd4FloatingpointTest.fms (0 ms) +27: [ OK ] Simd4FloatingpointTest.fms (1 ms) 27: [ RUN ] Simd4FloatingpointTest.fnma 27: [ OK ] Simd4FloatingpointTest.fnma (0 ms) 27: [ RUN ] Simd4FloatingpointTest.fnms @@ -109053,7 +109122,7 @@ 27: [ RUN ] Simd4FloatingpointTest.blend 27: [ OK ] Simd4FloatingpointTest.blend (0 ms) 27: [ RUN ] Simd4FloatingpointTest.reduce -27: [ OK ] Simd4FloatingpointTest.reduce (1 ms) +27: [ OK ] Simd4FloatingpointTest.reduce (0 ms) 27: [ RUN ] Simd4FloatingpointTest.dotProduct 27: [ OK ] Simd4FloatingpointTest.dotProduct (0 ms) 27: [ RUN ] Simd4FloatingpointTest.transpose @@ -109251,12 +109320,12 @@ 27: [ OK ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy (0 ms) 27: [ RUN ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy 27: [ OK ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) -27: [----------] 37 tests from SimdScalarMathTest (0 ms total) +27: [----------] 37 tests from SimdScalarMathTest (1 ms total) 27: 27: [----------] Global test environment tear-down -27: [==========] 288 tests from 22 test cases ran. (44 ms total) +27: [==========] 288 tests from 22 test cases ran. (21 ms total) 27: [ PASSED ] 288 tests. -27/30 Test #27: SimdUnitTests .................... Passed 0.07 sec +27/30 Test #27: SimdUnitTests .................... Passed 0.04 sec test 28 Start 28: CompatibilityHelpersTests @@ -109326,7 +109395,7 @@ 28: [ RUN ] OptionalTest.CanCopyAssignBetweenEngagedAndDisengagedOptionals 28: [ OK ] OptionalTest.CanCopyAssignBetweenEngagedAndDisengagedOptionals (0 ms) 28: [ RUN ] OptionalTest.CanCopyAssignBetweenEngagedAndDisengagedOptionalsConverting -28: [ OK ] OptionalTest.CanCopyAssignBetweenEngagedAndDisengagedOptionalsConverting (1 ms) +28: [ OK ] OptionalTest.CanCopyAssignBetweenEngagedAndDisengagedOptionalsConverting (0 ms) 28: [ RUN ] OptionalTest.CanMoveAssignBetweenEngagedAndDisengagedOptionalsConverting 28: [ OK ] OptionalTest.CanMoveAssignBetweenEngagedAndDisengagedOptionalsConverting (0 ms) 28: [ RUN ] OptionalTest.CanCopyAssignFromLiteral @@ -109454,7 +109523,7 @@ 28: [ OK ] OptionalIntValueTest.CanNonMemberSwapDisengagnedWithEngaged (0 ms) 28: [ RUN ] OptionalIntValueTest.CanNonMemberSwapEngagnedWithDisengaged 28: [ OK ] OptionalIntValueTest.CanNonMemberSwapEngagnedWithDisengaged (0 ms) -28: [----------] 20 tests from OptionalIntValueTest (1 ms total) +28: [----------] 20 tests from OptionalIntValueTest (0 ms total) 28: 28: [----------] 1 test from NotNullConstruction 28: [ RUN ] NotNullConstruction.Works @@ -109483,7 +109552,7 @@ 28: 28: [----------] 80 tests from StringViewTest 28: [ RUN ] StringViewTest.CanDefaultConstructEmptyView -28: [ OK ] StringViewTest.CanDefaultConstructEmptyView (0 ms) +28: [ OK ] StringViewTest.CanDefaultConstructEmptyView (1 ms) 28: [ RUN ] StringViewTest.CanConstructFromPointerAndSize 28: [ OK ] StringViewTest.CanConstructFromPointerAndSize (0 ms) 28: [ RUN ] StringViewTest.CanConstructFromCString @@ -109509,7 +109578,7 @@ 28: [ RUN ] StringViewTest.CanObtainSizeFromViewViaLength 28: [ OK ] StringViewTest.CanObtainSizeFromViewViaLength (0 ms) 28: [ RUN ] StringViewTest.CanObtainMaxSizeViaMaxSize -28: [ OK ] StringViewTest.CanObtainMaxSizeViaMaxSize (1 ms) +28: [ OK ] StringViewTest.CanObtainMaxSizeViaMaxSize (0 ms) 28: [ RUN ] StringViewTest.CanCheckForEmptyStringWithEmpty 28: [ OK ] StringViewTest.CanCheckForEmptyStringWithEmpty (0 ms) 28: [ RUN ] StringViewTest.CanAccessElementViaArrayIndex @@ -109642,7 +109711,7 @@ 28: [ OK ] StringViewTest.HashOfU16StringViewIsEqualToHashOfString (0 ms) 28: [ RUN ] StringViewTest.HashOfU32StringViewIsEqualToHashOfString 28: [ OK ] StringViewTest.HashOfU32StringViewIsEqualToHashOfString (0 ms) -28: [----------] 80 tests from StringViewTest (2 ms total) +28: [----------] 80 tests from StringViewTest (1 ms total) 28: 28: [----------] 5 tests from StringViewExtensionTest 28: [ RUN ] StringViewExtensionTest.CanConstructViewFromString @@ -109658,9 +109727,9 @@ 28: [----------] 5 tests from StringViewExtensionTest (0 ms total) 28: 28: [----------] Global test environment tear-down -28: [==========] 170 tests from 12 test cases ran. (4 ms total) +28: [==========] 170 tests from 12 test cases ran. (2 ms total) 28: [ PASSED ] 170 tests. -28/30 Test #28: CompatibilityHelpersTests ........ Passed 0.03 sec +28/30 Test #28: CompatibilityHelpersTests ........ Passed 0.02 sec test 29 Start 29: FileIOTests @@ -109682,18 +109751,18 @@ 29: [ OK ] MrcSerializer.DefaultHeaderHasRightSerialSize (0 ms) 29: [ RUN ] MrcSerializer.DefaultHeaderIdenticalAfterRoundTrip 29: [ OK ] MrcSerializer.DefaultHeaderIdenticalAfterRoundTrip (1 ms) -29: [----------] 3 tests from MrcSerializer (2 ms total) +29: [----------] 3 tests from MrcSerializer (1 ms total) 29: 29: [----------] 4 tests from MrcDensityMap 29: [ RUN ] MrcDensityMap.RoundTripIsIdempotent -29: [ OK ] MrcDensityMap.RoundTripIsIdempotent (1 ms) +29: [ OK ] MrcDensityMap.RoundTripIsIdempotent (0 ms) 29: [ RUN ] MrcDensityMap.ThrowsFileIOErrorWhenFileNotPresent 29: [ OK ] MrcDensityMap.ThrowsFileIOErrorWhenFileNotPresent (0 ms) 29: [ RUN ] MrcDensityMap.ReadsCoordinateTransformationFromFile 29: [ OK ] MrcDensityMap.ReadsCoordinateTransformationFromFile (0 ms) 29: [ RUN ] MrcDensityMap.ReadsDensityDataFromFile -29: [ OK ] MrcDensityMap.ReadsDensityDataFromFile (2 ms) -29: [----------] 4 tests from MrcDensityMap (3 ms total) +29: [ OK ] MrcDensityMap.ReadsDensityDataFromFile (1 ms) +29: [----------] 4 tests from MrcDensityMap (1 ms total) 29: 29: [----------] 8 tests from MrcDensityMapHeaderTest 29: [ RUN ] MrcDensityMapHeaderTest.DataSizeIsZeroForDefaultHeader @@ -109767,33 +109836,33 @@ 29: 29: [----------] 1 test from FileIOXdrSerializerTest 29: [ RUN ] FileIOXdrSerializerTest.SizeIsCorrect -29: [ OK ] FileIOXdrSerializerTest.SizeIsCorrect (1 ms) -29: [----------] 1 test from FileIOXdrSerializerTest (1 ms total) +29: [ OK ] FileIOXdrSerializerTest.SizeIsCorrect (0 ms) +29: [----------] 1 test from FileIOXdrSerializerTest (0 ms total) 29: 29: [----------] 2 tests from TngTest 29: [ RUN ] TngTest.CanOpenTngFile 29: TNG library: Cannot open file spc2-traj.tng. /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/tng_io.c: 890 29: TNG library: Cannot open file spc2-traj.tng. /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/tng_io.c: 890 -29: [ OK ] TngTest.CanOpenTngFile (0 ms) +29: [ OK ] TngTest.CanOpenTngFile (1 ms) 29: [ RUN ] TngTest.CloseBeforeOpenIsNotFatal 29: [ OK ] TngTest.CloseBeforeOpenIsNotFatal (0 ms) -29: [----------] 2 tests from TngTest (0 ms total) +29: [----------] 2 tests from TngTest (1 ms total) 29: 29: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (0 ms) 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 -29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) +29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (0 ms) 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 -29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (2 ms) +29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (1 ms) 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) -29: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (3 ms total) +29: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (1 ms total) 29: 29: [----------] Global test environment tear-down -29: [==========] 33 tests from 8 test cases ran. (10 ms total) +29: [==========] 33 tests from 8 test cases ran. (5 ms total) 29: [ PASSED ] 33 tests. -29/30 Test #29: FileIOTests ...................... Passed 0.04 sec +29/30 Test #29: FileIOTests ...................... Passed 0.02 sec test 30 Start 30: SelectionUnitTests @@ -109808,9 +109877,9 @@ 30: 30: [----------] 15 tests from IndexBlockTest 30: [ RUN ] IndexBlockTest.CreatesUnknownBlock -30: [ OK ] IndexBlockTest.CreatesUnknownBlock (0 ms) +30: [ OK ] IndexBlockTest.CreatesUnknownBlock (1 ms) 30: [ RUN ] IndexBlockTest.CreatesAtomBlock -30: [ OK ] IndexBlockTest.CreatesAtomBlock (1 ms) +30: [ OK ] IndexBlockTest.CreatesAtomBlock (0 ms) 30: [ RUN ] IndexBlockTest.CreatesResidueBlocksForSimpleTopology 30: [ OK ] IndexBlockTest.CreatesResidueBlocksForSimpleTopology (0 ms) 30: [ RUN ] IndexBlockTest.CreatesResidueBlocksForComplexTopology @@ -109818,7 +109887,7 @@ 30: [ RUN ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology 30: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology (0 ms) 30: [ RUN ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology -30: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology (1 ms) +30: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology (0 ms) 30: [ RUN ] IndexBlockTest.CreatesSingleBlock 30: [ OK ] IndexBlockTest.CreatesSingleBlock (0 ms) 30: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksPositive @@ -109837,7 +109906,7 @@ 30: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive (0 ms) 30: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative 30: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative (0 ms) -30: [----------] 15 tests from IndexBlockTest (2 ms total) +30: [----------] 15 tests from IndexBlockTest (1 ms total) 30: 30: [----------] 11 tests from IndexMapTest 30: [ RUN ] IndexMapTest.InitializesAtomBlock @@ -109853,7 +109922,7 @@ 30: [ RUN ] IndexMapTest.InitializesOrgIdGroupAll 30: [ OK ] IndexMapTest.InitializesOrgIdGroupAll (0 ms) 30: [ RUN ] IndexMapTest.InitializesMoleculeBlock -30: [ OK ] IndexMapTest.InitializesMoleculeBlock (1 ms) +30: [ OK ] IndexMapTest.InitializesMoleculeBlock (0 ms) 30: [ RUN ] IndexMapTest.MapsSingleBlock 30: [ OK ] IndexMapTest.MapsSingleBlock (0 ms) 30: [ RUN ] IndexMapTest.MapsResidueBlocks @@ -109861,8 +109930,8 @@ 30: [ RUN ] IndexMapTest.MapsResidueBlocksWithMask 30: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (0 ms) 30: [ RUN ] IndexMapTest.HandlesMultipleRequests -30: [ OK ] IndexMapTest.HandlesMultipleRequests (1 ms) -30: [----------] 11 tests from IndexMapTest (3 ms total) +30: [ OK ] IndexMapTest.HandlesMultipleRequests (0 ms) +30: [----------] 11 tests from IndexMapTest (1 ms total) 30: 30: [----------] 3 tests from IndexGroupsAndNamesTest 30: [ RUN ] IndexGroupsAndNamesTest.containsNames @@ -109875,25 +109944,25 @@ 30: 30: [----------] 15 tests from NeighborhoodSearchTest 30: [ RUN ] NeighborhoodSearchTest.SimpleSearch -30: [ OK ] NeighborhoodSearchTest.SimpleSearch (20 ms) +30: [ OK ] NeighborhoodSearchTest.SimpleSearch (7 ms) 30: [ RUN ] NeighborhoodSearchTest.SimpleSearchXY -30: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (16 ms) +30: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (7 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchBox -30: [ OK ] NeighborhoodSearchTest.GridSearchBox (2 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearchBox (1 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchTriclinic -30: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (8 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (4 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearch2DPBC -30: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (3 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (2 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchNoPBC 30: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (1 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchXYBox -30: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (2 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (1 ms) 30: [ RUN ] NeighborhoodSearchTest.SimpleSelfPairsSearch 30: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (0 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSelfPairsSearch -30: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (27 ms) +30: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (19 ms) 30: [ RUN ] NeighborhoodSearchTest.HandlesConcurrentSearches -30: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (0 ms) +30: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (1 ms) 30: [ RUN ] NeighborhoodSearchTest.HandlesNoPBC 30: [ OK ] NeighborhoodSearchTest.HandlesNoPBC (0 ms) 30: [ RUN ] NeighborhoodSearchTest.HandlesNullPBC @@ -109901,10 +109970,10 @@ 30: [ RUN ] NeighborhoodSearchTest.HandlesSkippingPairs 30: [ OK ] NeighborhoodSearchTest.HandlesSkippingPairs (0 ms) 30: [ RUN ] NeighborhoodSearchTest.SimpleSearchExclusions -30: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (2 ms) +30: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (1 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchExclusions -30: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (0 ms) -30: [----------] 15 tests from NeighborhoodSearchTest (81 ms total) +30: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (1 ms) +30: [----------] 15 tests from NeighborhoodSearchTest (45 ms total) 30: 30: [----------] 12 tests from PositionCalculationTest 30: [ RUN ] PositionCalculationTest.ComputesAtomPositions @@ -109931,25 +110000,25 @@ 30: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (0 ms) 30: [ RUN ] PositionCalculationTest.HandlesOverlappingStaticCalculations 30: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (0 ms) -30: [----------] 12 tests from PositionCalculationTest (2 ms total) +30: [----------] 12 tests from PositionCalculationTest (1 ms total) 30: 30: [----------] 29 tests from SelectionCollectionTest 30: [ RUN ] SelectionCollectionTest.HandlesNoSelections -30: [ OK ] SelectionCollectionTest.HandlesNoSelections (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesNoSelections (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType -30: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesVelocityAndForceRequests 30: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry -30: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (0 ms) 30: [ RUN ] SelectionCollectionTest.ParsesSelectionsFromFile 30: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesAtypicalWhitespace 30: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesInvalidRegularExpressions -30: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue -30: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue2 30: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue3 @@ -109959,15 +110028,15 @@ 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 -30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReference 30: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed -30: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup -30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed 30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 @@ -109981,7 +110050,7 @@ 30: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation 30: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation (0 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation2 -30: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation2 (1 ms) +30: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation2 (0 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation3 30: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation3 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets @@ -109992,11 +110061,11 @@ 30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (0 ms) -30: [----------] 29 tests from SelectionCollectionTest (6 ms total) +30: [----------] 29 tests from SelectionCollectionTest (5 ms total) 30: 30: [----------] 14 tests from SelectionCollectionInteractiveTest 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesBasicInput -30: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (0 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (1 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesContinuation 30: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput @@ -110006,7 +110075,7 @@ 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups 30: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections -30: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (0 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (1 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus 30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus @@ -110014,48 +110083,48 @@ 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus 30: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline -30: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (1 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesEmptySelections 30: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine 30: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput -30: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (0 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (1 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively 30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (0 ms) -30: [----------] 14 tests from SelectionCollectionInteractiveTest (2 ms total) +30: [----------] 14 tests from SelectionCollectionInteractiveTest (3 ms total) 30: 30: [----------] 66 tests from SelectionCollectionDataTest 30: [ RUN ] SelectionCollectionDataTest.HandlesAllNone 30: [ OK ] SelectionCollectionDataTest.HandlesAllNone (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesAtomnr -30: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesResnr 30: [ OK ] SelectionCollectionDataTest.HandlesResnr (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesResIndex -30: [ OK ] SelectionCollectionDataTest.HandlesResIndex (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesResIndex (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesMolIndex 30: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesAtomname -30: [ OK ] SelectionCollectionDataTest.HandlesAtomname (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesAtomname (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPdbAtomname 30: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesAtomtype 30: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesChain -30: [ OK ] SelectionCollectionDataTest.HandlesChain (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesChain (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesMass 30: [ OK ] SelectionCollectionDataTest.HandlesMass (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesCharge -30: [ OK ] SelectionCollectionDataTest.HandlesCharge (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesCharge (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesAltLoc 30: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesInsertCode 30: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesOccupancy -30: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBeta -30: [ OK ] SelectionCollectionDataTest.HandlesBeta (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesBeta (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesResname 30: [ OK ] SelectionCollectionDataTest.HandlesResname (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesCoordinateKeywords @@ -110067,7 +110136,7 @@ 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionKeywords 30: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesDistanceKeyword -30: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesMinDistanceKeyword 30: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesWithinKeyword @@ -110075,9 +110144,9 @@ 30: [ RUN ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword 30: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (2 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPermuteModifier -30: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPlusModifier -30: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesMergeModifier 30: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (1 ms) 30: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndCharges @@ -110093,41 +110162,41 @@ 30: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed 30: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections -30: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed 30: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositions 30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers -30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesWithinConstantPositions -30: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges 30: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingRealRanges 30: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode -30: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesWildcardMatching 30: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesRegexMatching -30: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBasicBoolean 30: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters 30: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions -30: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame 30: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords -30: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods 30: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositions -30: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic -30: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesNumericComparisons 30: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesArithmeticExpressions @@ -110139,34 +110208,34 @@ 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariables 30: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariableInModifier -30: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionInVariable -30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables 30: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis -30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables 30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables 30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesUnusedVariables -30: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups 30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups -30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (0 ms) -30: [----------] 66 tests from SelectionCollectionDataTest (25 ms total) +30: [----------] 66 tests from SelectionCollectionDataTest (22 ms total) 30: 30: [----------] 17 tests from SelectionOptionTest 30: [ RUN ] SelectionOptionTest.ParsesSimpleSelection 30: [ OK ] SelectionOptionTest.ParsesSimpleSelection (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired -30: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (0 ms) +30: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (1 ms) 30: [ RUN ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired -30: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (1 ms) +30: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (0 ms) 30: [ RUN ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired 30: [ OK ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired (0 ms) 30: [ RUN ] SelectionOptionTest.ChecksEmptySelections @@ -110180,7 +110249,7 @@ 30: [ RUN ] SelectionOptionTest.HandlesDefaultSelectionText 30: [ OK ] SelectionOptionTest.HandlesDefaultSelectionText (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesAdjuster -30: [ OK ] SelectionOptionTest.HandlesAdjuster (0 ms) +30: [ OK ] SelectionOptionTest.HandlesAdjuster (1 ms) 30: [ RUN ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster 30: [ OK ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster @@ -110199,13 +110268,13 @@ 30: 30: [----------] 9 tests from SelectionFileOptionTest 30: [ RUN ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile -30: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (0 ms) +30: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (1 ms) 30: [ RUN ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions 30: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (0 ms) 30: [ RUN ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile 30: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (0 ms) 30: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFile -30: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (1 ms) +30: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (0 ms) 30: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet 30: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (0 ms) 30: [ RUN ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile @@ -110215,22 +110284,22 @@ 30: [ RUN ] SelectionFileOptionTest.GivesErrorWithNonExistentFile 30: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (0 ms) 30: [ RUN ] SelectionFileOptionTest.GivesErrorWithMultipleFiles -30: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (0 ms) -30: [----------] 9 tests from SelectionFileOptionTest (1 ms total) +30: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (1 ms) +30: [----------] 9 tests from SelectionFileOptionTest (2 ms total) 30: 30: [----------] Global test environment tear-down -30: [==========] 192 tests from 11 test cases ran. (126 ms total) +30: [==========] 192 tests from 11 test cases ran. (83 ms total) 30: [ PASSED ] 192 tests. -30/30 Test #30: SelectionUnitTests ............... Passed 0.16 sec +30/30 Test #30: SelectionUnitTests ............... Passed 0.10 sec 100% tests passed, 0 tests failed out of 30 Label Time Summary: -GTest = 1.58 sec*proc (30 tests) -MpiTest = 0.13 sec*proc (3 tests) -UnitTest = 1.58 sec*proc (30 tests) +GTest = 1.11 sec*proc (30 tests) +MpiTest = 0.24 sec*proc (3 tests) +UnitTest = 1.11 sec*proc (30 tests) -Total Test time (real) = 1.61 sec +Total Test time (real) = 1.13 sec touch build-mpich dh_testdir /usr/bin/make -j12 -C build/openmpi @@ -110242,122 +110311,122 @@ /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend Scanning dependencies of target release-version-info Scanning dependencies of target lmfit_objlib make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +Scanning dependencies of target scanner make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp -Scanning dependencies of target scanner -Scanning dependencies of target thread_mpi +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -Scanning dependencies of target linearalgebra +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -Scanning dependencies of target mdrun_objlib +Scanning dependencies of target thread_mpi +Scanning dependencies of target tng_io_obj +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +Scanning dependencies of target linearalgebra make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/lock.cpp +[ 0%] Built target release-version-info make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp -Scanning dependencies of target tng_io_obj -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= Scanning dependencies of target modularsimulator make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f 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/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/lock.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o 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-I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat 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/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/constraintelement.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 1%] Built target thread_mpi -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/sparsematrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/dict.c -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security 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/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/domdechelper.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffman.c +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops 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/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffmem.c +[ 1%] Built target thread_mpi +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +Scanning dependencies of target mdrun_objlib +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/constraintelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/mtf.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/rle.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 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-I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/warnmalloc.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/widemuldiv.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o 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-DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/tng_io.c +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 1%] Built target lmfit_objlib +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src 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-I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat 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/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem 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CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/modularsimulator.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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'/build/reproducible-path/gromacs-2020.6/build/openmpi' [ 2%] Built target linearalgebra make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' [ 2%] Built target scanner @@ -110765,12 +110834,12 @@ cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/nsgrid.cpp /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp:103:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem 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/build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/perf_est.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_gamess.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_gaussian.cpp @@ -110825,12 +110894,12 @@ cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_pp.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_redistribute.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_solve.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spline_work.cpp /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_solve.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spline_work.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spread.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_gpu_program.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp @@ -110989,127 +111058,127 @@ /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= -Scanning dependencies of target release-version-info Scanning dependencies of target lmfit_objlib make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -Scanning dependencies of target linearalgebra -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +Scanning dependencies of target release-version-info /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -Scanning dependencies of target scanner make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +Scanning dependencies of target scanner Scanning dependencies of target thread_mpi -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/selection && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp Scanning dependencies of target mdrun_objlib -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/selection && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp +Scanning dependencies of target linearalgebra make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/selection && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -Scanning dependencies of target tng_io_obj +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/selection && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/nonbonded_bench.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp +Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -[ 0%] Built target release-version-info +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' Scanning dependencies of target modularsimulator -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/checkpointhelper.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp +[ 0%] Built target release-version-info +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat 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/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/nrjac.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/system_error.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/constraintelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/domdechelper.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +[ 1%] Built target thread_mpi +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/energyelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/energyelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/forceelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +[ 1%] Built target lmfit_objlib cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/dict.c -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/sparsematrix.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/fixpoint.c -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/modularsimulator.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffman.c -[ 1%] Built target thread_mpi -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffmem.c +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +[ 2%] Built target mdrun_objlib cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/lz77.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/merge_sort.c -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/nonbonded_bench.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/mtf.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/rle.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/tng_compress.c +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/vals16.c -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/propagator.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/warnmalloc.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/widemuldiv.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc2.c -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/constraintelement.cpp -[ 1%] Built target lmfit_objlib +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/shellfcelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc3.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/tng_io.c -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/md5.c -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/domdechelper.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/energyelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/energyelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/forceelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/modularsimulator.cpp -[ 2%] Built target mdrun_objlib -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/propagator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/shellfcelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/signallers.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/statepropagatordata.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/topologyholder.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/trajectoryelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/vrescalethermostat.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -[ 2%] Built target linearalgebra +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/md5.c +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/nrjac.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/sparsematrix.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' [ 2%] Built target scanner make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -[ 5%] Built target tng_io_obj +[ 2%] Built target linearalgebra make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -[ 8%] Built target modularsimulator +[ 5%] Built target modularsimulator +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +[ 8%] Built target tng_io_obj /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/VersionInfo.cmake -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /build/reproducible-path/gromacs-2020.6/cmake/gmxConfigureVersionInfo.cmake @@ -111573,12 +111642,12 @@ cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_solve.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spline_work.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spread.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_gpu_program.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_gpu_program.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_gpu_program_impl.cpp @@ -111738,58 +111807,65 @@ /usr/bin/make -f CMakeFiles/Makefile2 CMakeFiles/tests.dir/all make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -cd 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+[ 0%] Built target release-version-info make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. +make[4]: Leaving directory 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'src/gromacs/CMakeFiles/thread_mpi.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +[ 3%] Built target tng_io_obj +[ 3%] Built target linearalgebra make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/external/googletest/googlemock/gtest /build/reproducible-path/gromacs-2020.6/build/openmpi/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build Scanning dependencies of target gtest @@ -111798,16 +111874,9 @@ make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build -[ 0%] Built target scanner -[ 0%] Built target lmfit_objlib -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 3%] Built target thread_mpi -[ 3%] Built target tng_io_obj -[ 3%] Built target linearalgebra [ 5%] Built target modularsimulator make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/external/googletest/googlemock/gtest && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -I/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=c++14 -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/src/gtest-all.cc -[ 5%] Built target release-version-info /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= @@ -111873,113 +111942,150 @@ make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' [ 76%] Built target testutils /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= +Scanning dependencies of target testutils-mpi-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= -Scanning dependencies of target testutils-mpi-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -Scanning dependencies of target utility-mpi-test /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build -Scanning dependencies of target onlinehelp-test-shared +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/mpitest.cpp +Scanning dependencies of target selection-test +Scanning dependencies of target testutils-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build -Scanning dependencies of target domdec-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend +Scanning dependencies of target utility-mpi-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build +Scanning dependencies of target utility-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -Scanning dependencies of target testutils-test -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/hashedmap.cpp -Scanning dependencies of target selection-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/indexutil.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' Scanning dependencies of target applied_forces-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/nbsearch.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/interactivetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/poscalc.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build +Scanning dependencies of target onlinehelp-test-shared +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build -Scanning dependencies of target fft-test -Scanning dependencies of target gpu_utils-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/alignedallocator.cpp +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp +Scanning dependencies of target mdlib-test +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectioncollection.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 77%] Built target testutils-mpi-test +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp -/usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 +Scanning dependencies of target domdec-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/indexutil.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/hashedmap.cpp +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constr.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 77%] Built target utility-mpi-test +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests/fft.cpp -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/testasserts_tests.cpp Scanning dependencies of target ewald-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/gputest.cpp /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build -Scanning dependencies of target utility-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmebsplinetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectionoption.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingoptions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o +/usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build -Scanning dependencies of target mdlib-test +[ 77%] Built target onlinehelp-test-shared +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= +Scanning dependencies of target fft-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/alignedallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests/fft.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/toputils.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/electricfield.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/xvgtest_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd 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CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/arrayref.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask32.cpp +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestdata.cpp +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 77%] Built target domdec-test +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/clfftinitializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/hostallocator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constr.cpp -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= +Scanning dependencies of target gpu_utils-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/gputest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask64.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 76%] Built target utility-mpi-test +[ 77%] Built target fft-test /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= @@ -111988,24 +112094,25 @@ /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests/hardwaretopology.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/clfftinitializer.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 77%] Built target testutils-mpi-test +[ 77%] Built target testutils-test /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingoptions.cpp Scanning dependencies of target math-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/arrayrefwithpadding.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -/usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask128.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/hostallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/cstringutil.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestrunners.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 77%] Built target onlinehelp-test-shared +[ 77%] Built target applied_forces-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= @@ -112014,44 +112121,44 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/defaultinitializationallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/enumerationhelpers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/ebin.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/fixedcapacityvector.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/inmemoryserializer.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 77%] Built target fft-test +[ 77%] Built target hardware-test /usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/nbsearch.cpp Scanning dependencies of target mdspan-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/accessor_policy.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/energyoutput.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreeserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/coordinatetransformation.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp /usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extents.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' [ 78%] Built target mdrunutility-test-shared /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 Scanning dependencies of target onlinehelp-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpformat.cpp -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extents.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 78%] Built target domdec-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= @@ -112060,8 +112167,14 @@ /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/abstractoptionstorage.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/logger.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extensions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/mutex.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 78%] Built target hardware-test +[ 79%] Built target selection-test /usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= @@ -112070,72 +112183,70 @@ /usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbc.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/electricfield.cpp -cd 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CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/expanded.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/poscalc.cpp -[ 78%] Built target pbcutil-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp +[ 79%] Built target pbcutil-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/stringutil.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Scanning dependencies of target random-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/exponentialdistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/xvgtest_tests.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/layouts.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/ebin.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textreader.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/mdspan.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectioncollection.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/energyoutput.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 79%] Built target onlinehelp-test +[ 80%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/restraint/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/gammadistribution.cpp Scanning dependencies of target restraintpotential-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/restraint/tests/manager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textwriter.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/typetraits.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/gammadistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 79%] Built target testutils-test +[ 80%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 Scanning dependencies of target table-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/tables/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests/splinetable.cpp -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfit.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoption.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoptionmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrog.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/dofit.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -[ 79%] Built target applied_forces-test +[ 80%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= @@ -112144,49 +112255,58 @@ /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests/usergpuids.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoption.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/normaldistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/exponentialmovingaverage.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmetestcommon.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/option.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/optionsassigner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/functions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/seed.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settle.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/repeatingsection.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestdata.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 79%] Built target restraintpotential-test +[ 81%] Built target ewald-test /usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp Scanning dependencies of target topology-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/exclusionblocks.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/normaldistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestrunners.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/mtop.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/symtab.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/expanded.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoptionmanager.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 79%] Built target gpu_utils-test +[ 82%] Built target taskassignment-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/dofit.cpp Scanning dependencies of target pull-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/gausstransform.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests/pull.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/seed.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/exponentialmovingaverage.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/shake.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformintdistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/symtab.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 80%] Built target taskassignment-test +[ 82%] Built target mdspan-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= @@ -112195,20 +112315,15 @@ /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/bias.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/simulationsignal.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmetestcommon.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 81%] Built target pull-test -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/biasstate.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/functions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrog.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/timeunitmanager.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 82%] Built target topology-test +[ 83%] Built target pull-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroups.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Scanning dependencies of target simd-test @@ -112216,20 +112331,17 @@ /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/bootstrap_loadstore.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/option.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectionoption.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/optionsassigner.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security 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../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/tables/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroupscog.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfittingforce.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/treesupport.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 82%] Built target mdspan-test +[ 84%] Built target topology-test /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= @@ -112238,15 +112350,14 @@ /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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/usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/gausstransform.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests 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CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 82%] Built target table-test +[ 87%] Built target utility-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= @@ -112255,11 +112366,16 @@ /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/confio.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfittingforce.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi 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CMakeFiles/table-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/expanded.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 83%] Built target ewald-test +[ 87%] Built target table-test /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= @@ -112268,9 +112384,9 @@ /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/invertmatrix.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 84%] Built target awh-test +[ 88%] Built target random-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= @@ -112279,22 +112395,14 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformintdistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/invertmatrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/filemd5.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settle.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/matrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/biasstate.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/string_view.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/multidimarray.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/filemd5.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 84%] Built target mdrunutility-mpi-test +[ 90%] Built target mdlib-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= @@ -112303,116 +112411,77 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/repeatingsection.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymap.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_vector_operations.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/grid.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 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../../../../lib/libgmock.a ../../../../lib/libgtest.a cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops 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-I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask32.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_math.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 90%] Built target mdrunutility-mpi-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_memory.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymap.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 91%] Built target options-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymapheader.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/vectypes.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 85%] Built target random-test +[ 92%] Built target awh-test cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask64.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/toputils.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestrunners.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymapheader.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 85%] Built target mdrunutility-test -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask128.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/shake.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/tngio.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +[ 92%] Built target mdrunutility-test cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" 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/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textreader.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_vector_operations.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_math.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 89%] Built target compat-test -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textwriter.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_util.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 91%] Built target math-test cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_math.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 93%] Built target fileio-test cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/typetraits.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 93%] Built target mdlib-test +[ 94%] Built target compat-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 94%] Built target commandline-test +[ 95%] Built target commandline-test cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 96%] Built target simd-test -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +[ 97%] Built target simd-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm /usr/lib/gcc/aarch64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[100%] Built target utility-test +[100%] Built target math-test /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/CMakeFiles/tests.dir/DependInfo.cmake --color= @@ -112453,9 +112522,9 @@ 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession 1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (1 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput @@ -112463,14 +112532,14 @@ 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput -1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (1 ms) -1: [----------] 10 tests from InteractiveTestHelperTest (4 ms total) +1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) +1: [----------] 10 tests from InteractiveTestHelperTest (1 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData @@ -112480,11 +112549,11 @@ 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks 1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData -1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesStringBlockData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData 1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData -1: [ OK ] ReferenceDataTest.HandlesSequenceData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData 1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData @@ -112506,17 +112575,17 @@ 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey -1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (1 ms) +1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesAnysWithIncorrectValue 1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectValue (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesAnysWithIncorrectType 1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile -1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) +1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings 1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace -1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (1 ms) +1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings 1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock @@ -112524,7 +112593,7 @@ 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices 1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData -1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds @@ -112540,8 +112609,8 @@ 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (1 ms) -1: [----------] 34 tests from ReferenceDataTest (7 ms total) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) +1: [----------] 34 tests from ReferenceDataTest (3 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues @@ -112580,12 +112649,12 @@ 1: [ OK ] XvgTests.CheckExtra (0 ms) 1: [ RUN ] XvgTests.ReadIncorrect 1: [ OK ] XvgTests.ReadIncorrect (0 ms) -1: [----------] 4 tests from XvgTests (1 ms total) +1: [----------] 4 tests from XvgTests (0 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (12 ms total) +1: [==========] 59 tests from 5 test cases ran. (4 ms total) 1: [ PASSED ] 59 tests. - 1/30 Test #1: TestUtilsUnitTests ............... Passed 0.21 sec + 1/30 Test #1: TestUtilsUnitTests ............... Passed 0.47 sec test 2 Start 2: TestUtilsMpiUnitTests @@ -112595,13 +112664,13 @@ 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs -2: [ OK ] MpiSelfTest.Runs (0 ms) -2: [----------] 1 test from MpiSelfTest (0 ms total) +2: [ OK ] MpiSelfTest.Runs (3 ms) +2: [----------] 1 test from MpiSelfTest (3 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 1 test from 1 test case ran. (0 ms total) +2: [==========] 1 test from 1 test case ran. (3 ms total) 2: [ PASSED ] 1 test. - 2/30 Test #2: TestUtilsMpiUnitTests ............ Passed 0.20 sec + 2/30 Test #2: TestUtilsMpiUnitTests ............ Passed 0.69 sec test 3 Start 3: UtilityUnitTests @@ -112680,12 +112749,12 @@ 3: [ RUN ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment 3: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment -3: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (1 ms) +3: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/5.Move 3: [ OK ] AllocatorTest/5.Move (0 ms) 3: [ RUN ] AllocatorTest/5.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/5.StatelessAllocatorUsesNoMemory (0 ms) -3: [----------] 5 tests from AllocatorTest/5 (1 ms total) +3: [----------] 5 tests from AllocatorTest/5 (0 ms total) 3: 3: [----------] 1 test from AllocatorUntypedTest 3: [ RUN ] AllocatorUntypedTest.Comparison @@ -112952,7 +113021,7 @@ 3: [ OK ] ArrayRefTest/11.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/11 (1 ms total) +3: [----------] 9 tests from ArrayRefTest/11 (0 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/12, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/12.MakeWithAssignmentWorks @@ -112994,7 +113063,7 @@ 3: [ OK ] ArrayRefTest/13.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/13 (0 ms total) +3: [----------] 9 tests from ArrayRefTest/13 (1 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/14, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/14.MakeWithAssignmentWorks @@ -113159,14 +113228,14 @@ 3: [ RUN ] FixedCapacityVectorTest.EmplaceBackWorks 3: [ OK ] FixedCapacityVectorTest.EmplaceBackWorks (0 ms) 3: [ RUN ] FixedCapacityVectorTest.AtThrows -3: [ OK ] FixedCapacityVectorTest.AtThrows (1 ms) +3: [ OK ] FixedCapacityVectorTest.AtThrows (0 ms) 3: [ RUN ] FixedCapacityVectorTest.IteratorWorks 3: [ OK ] FixedCapacityVectorTest.IteratorWorks (0 ms) 3: [ RUN ] FixedCapacityVectorTest.ReverseIteratorWorks 3: [ OK ] FixedCapacityVectorTest.ReverseIteratorWorks (0 ms) 3: [ RUN ] FixedCapacityVectorTest.ZeroCapacityWorks 3: [ OK ] FixedCapacityVectorTest.ZeroCapacityWorks (0 ms) -3: [----------] 9 tests from FixedCapacityVectorTest (1 ms total) +3: [----------] 9 tests from FixedCapacityVectorTest (0 ms total) 3: 3: [----------] 5 tests from InMemorySerializerTest 3: [ RUN ] InMemorySerializerTest.Roundtrip @@ -113204,7 +113273,7 @@ 3: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings 3: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 3: [ RUN ] TreeValueTransformTest.ScopedTransformRules -3: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) +3: [ OK ] TreeValueTransformTest.ScopedTransformRules (1 ms) 3: [----------] 6 tests from TreeValueTransformTest (1 ms total) 3: 3: [----------] 1 test from TreeValueTransformErrorTest @@ -113224,10 +113293,10 @@ 3: [ RUN ] LoggerTest.LogsToMultipleStreams 3: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms) 3: [ RUN ] LoggerTest.LogsToMultipleFiles -3: [ OK ] LoggerTest.LogsToMultipleFiles (0 ms) +3: [ OK ] LoggerTest.LogsToMultipleFiles (4 ms) 3: [ RUN ] LoggerTest.LogsToStreamAndFile 3: [ OK ] LoggerTest.LogsToStreamAndFile (0 ms) -3: [----------] 7 tests from LoggerTest (1 ms total) +3: [----------] 7 tests from LoggerTest (4 ms total) 3: 3: [----------] 4 tests from MutexBasicTest 3: [ RUN ] MutexBasicTest.CanBeMade @@ -113242,12 +113311,12 @@ 3: 3: [----------] 3 tests from MutexTaskTest 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock -3: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (1 ms) +3: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (16 ms) 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread -3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms) +3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (16 ms) 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) -3: [----------] 3 tests from MutexTaskTest (1 ms total) +3: [----------] 3 tests from MutexTaskTest (32 ms total) 3: 3: [----------] 2 tests from PathTest 3: [ RUN ] PathTest.StripSourcePrefixWorks @@ -113277,7 +113346,7 @@ 3: [ RUN ] StringUtilityTest.SplitDelimitedString 3: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) 3: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString -3: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (0 ms) +3: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (1 ms) 3: [ RUN ] StringUtilityTest.CanCompareCaseInsensitive 3: [ OK ] StringUtilityTest.CanCompareCaseInsensitive (0 ms) 3: [ RUN ] StringUtilityTest.CanCompareCaseInsensitiveInLength @@ -113333,7 +113402,7 @@ 3: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks 3: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks (0 ms) 3: [ RUN ] TextLineWrapperTest.HandlesIndent -3: [ OK ] TextLineWrapperTest.HandlesIndent (1 ms) +3: [ OK ] TextLineWrapperTest.HandlesIndent (0 ms) 3: [ RUN ] TextLineWrapperTest.HandlesIndentWithEmptyLines 3: [ OK ] TextLineWrapperTest.HandlesIndentWithEmptyLines (0 ms) 3: [ RUN ] TextLineWrapperTest.HandlesHangingIndent @@ -113342,7 +113411,7 @@ 3: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) 3: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace 3: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms) -3: [----------] 10 tests from TextLineWrapperTest (1 ms total) +3: [----------] 10 tests from TextLineWrapperTest (0 ms total) 3: 3: [----------] 6 tests from TextWriterTest 3: [ RUN ] TextWriterTest.WritesLines @@ -113435,24 +113504,24 @@ 3: 3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (1 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (15 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (12 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (16 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (16 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (16 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (16 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) -3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (1 ms total) +3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (91 ms total) 3: 3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 @@ -113469,12 +113538,12 @@ 3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (0 ms) 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (0 ms) -3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) +3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (0 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 347 tests from 56 test cases ran. (11 ms total) +3: [==========] 347 tests from 56 test cases ran. (130 ms total) 3: [ PASSED ] 347 tests. - 3/30 Test #3: UtilityUnitTests ................. Passed 0.21 sec + 3/30 Test #3: UtilityUnitTests ................. Passed 0.68 sec test 4 Start 4: UtilityMpiUnitTests @@ -113484,15 +113553,15 @@ 4: [----------] Global test environment set-up. 4: [----------] 2 tests from PhysicalNodeCommunicatorTest 4: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct -4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (0 ms) +4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (11 ms) 4: [ RUN ] PhysicalNodeCommunicatorTest.CanCallBarrier -4: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (0 ms) -4: [----------] 2 tests from PhysicalNodeCommunicatorTest (1 ms total) +4: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (1 ms) +4: [----------] 2 tests from PhysicalNodeCommunicatorTest (12 ms total) 4: 4: [----------] Global test environment tear-down -4: [==========] 2 tests from 1 test case ran. (1 ms total) +4: [==========] 2 tests from 1 test case ran. (12 ms total) 4: [ PASSED ] 2 tests. - 4/30 Test #4: UtilityMpiUnitTests .............. Passed 0.21 sec + 4/30 Test #4: UtilityMpiUnitTests .............. Passed 0.72 sec test 5 Start 5: MdlibUnitTest @@ -113507,21 +113576,21 @@ 5: 5: [----------] 2 tests from PrEbinTest 5: [ RUN ] PrEbinTest.HandlesAverages -5: [ OK ] PrEbinTest.HandlesAverages (1 ms) +5: [ OK ] PrEbinTest.HandlesAverages (0 ms) 5: [ RUN ] PrEbinTest.HandlesEmptyAverages 5: [ OK ] PrEbinTest.HandlesEmptyAverages (0 ms) -5: [----------] 2 tests from PrEbinTest (1 ms total) +5: [----------] 2 tests from PrEbinTest (0 ms total) 5: 5: [----------] 4 tests from ShakeTest 5: [ RUN ] ShakeTest.ConstrainsOneBond -5: [ OK ] ShakeTest.ConstrainsOneBond (0 ms) +5: [ OK ] ShakeTest.ConstrainsOneBond (1 ms) 5: [ RUN ] ShakeTest.ConstrainsTwoDisjointBonds 5: [ OK ] ShakeTest.ConstrainsTwoDisjointBonds (0 ms) 5: [ RUN ] ShakeTest.ConstrainsTwoBondsWithACommonAtom 5: [ OK ] ShakeTest.ConstrainsTwoBondsWithACommonAtom (0 ms) 5: [ RUN ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms 5: [ OK ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms (0 ms) -5: [----------] 4 tests from ShakeTest (0 ms total) +5: [----------] 4 tests from ShakeTest (1 ms total) 5: 5: [----------] 1 test from NullSignalTest 5: [ RUN ] NullSignalTest.NullSignallerWorks @@ -113559,23 +113628,23 @@ 5: [ RUN ] UpdateGroups.waterFourSite 5: [ OK ] UpdateGroups.waterFourSite (0 ms) 5: [ RUN ] UpdateGroups.fourAtomsWithSettle -5: [ OK ] UpdateGroups.fourAtomsWithSettle (1 ms) +5: [ OK ] UpdateGroups.fourAtomsWithSettle (0 ms) 5: [ RUN ] UpdateGroups.waterFlexAngle 5: [ OK ] UpdateGroups.waterFlexAngle (0 ms) 5: [ RUN ] UpdateGroups.twoMoltypes 5: [ OK ] UpdateGroups.twoMoltypes (0 ms) -5: [----------] 9 tests from UpdateGroups (1 ms total) +5: [----------] 9 tests from UpdateGroups (0 ms total) 5: 5: [----------] 1 test from UpdateGroupsCog 5: [ RUN ] UpdateGroupsCog.ComputesCogs -5: [ OK ] UpdateGroupsCog.ComputesCogs (1 ms) -5: [----------] 1 test from UpdateGroupsCog (1 ms total) +5: [ OK ] UpdateGroupsCog.ComputesCogs (0 ms) +5: [----------] 1 test from UpdateGroupsCog (0 ms total) 5: 5: [----------] 84 tests from WithParameters/ConstraintsTest 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/0 5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/0 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/1 -5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/1 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/1 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/2 5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/2 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/3 @@ -113649,7 +113718,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/13 5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/13 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/14 -5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/14 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/14 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/15 5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/15 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/0 @@ -113687,7 +113756,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/16 5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/16 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/17 -5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/17 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/17 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/18 5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/18 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/19 @@ -113727,7 +113796,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/16 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/16 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/17 -5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/17 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/17 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/18 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/18 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/19 @@ -113740,42 +113809,42 @@ 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/22 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 (0 ms) -5: [----------] 84 tests from WithParameters/ConstraintsTest (5 ms total) +5: [----------] 84 tests from WithParameters/ConstraintsTest (7 ms total) 5: 5: [----------] 11 tests from WithParameters/EnergyOutputTest 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/0 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_0.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/0 (3 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/0 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/1 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_1.edr as single precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/1 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/2 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_2.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (3 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/3 -5: [ OK ] WithParameters/EnergyOutputTest.CheckOutput/3 (1 ms) +5: [ OK ] WithParameters/EnergyOutputTest.CheckOutput/3 (0 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/4 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_4.edr as single precision energy file -5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (8 ms) +5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (20 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/5 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_5.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/6 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_6.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/6 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/6 (5 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/7 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_7.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/8 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_8.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/8 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/8 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/9 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_9.edr as single precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/9 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/10 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_10.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/10 (1 ms) -5: [----------] 11 tests from WithParameters/EnergyOutputTest (31 ms total) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/10 (10 ms) +5: [----------] 11 tests from WithParameters/EnergyOutputTest (43 ms total) 5: 5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/0 @@ -113857,11 +113926,11 @@ 5: [ OK ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/12 (0 ms) 5: [ RUN ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/13 5: [ OK ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/13 (0 ms) -5: [----------] 14 tests from RegressionTests/CalculateAcceptanceWeightRangeRegression (1 ms total) +5: [----------] 14 tests from RegressionTests/CalculateAcceptanceWeightRangeRegression (0 ms total) 5: 5: [----------] 16 tests from WithParameters/LeapFrogTest 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/0 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/0 (0 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/0 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/1 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/1 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/2 @@ -113871,7 +113940,7 @@ 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/4 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/4 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/5 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/5 (2 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/5 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/6 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (4 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/7 @@ -113892,7 +113961,7 @@ 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/14 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/15 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/15 (1 ms) -5: [----------] 16 tests from WithParameters/LeapFrogTest (15 ms total) +5: [----------] 16 tests from WithParameters/LeapFrogTest (24 ms total) 5: 5: [----------] 13 tests from WithParameters/SettleTest 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 @@ -113906,27 +113975,27 @@ 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/4 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/5 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/6 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/7 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (5 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (1 ms) -5: [----------] 13 tests from WithParameters/SettleTest (5 ms total) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (0 ms) +5: [----------] 13 tests from WithParameters/SettleTest (7 ms total) 5: 5: [----------] Global test environment tear-down -5: [==========] 187 tests from 13 test cases ran. (61 ms total) +5: [==========] 187 tests from 13 test cases ran. (83 ms total) 5: [ PASSED ] 187 tests. - 5/30 Test #5: MdlibUnitTest .................... Passed 0.26 sec + 5/30 Test #5: MdlibUnitTest .................... Passed 0.41 sec test 6 Start 6: AppliedForcesUnitTest @@ -113938,8 +114007,8 @@ 6: [ RUN ] DensityFittingTest.ForceProviderLackingInputThrows 6: [ OK ] DensityFittingTest.ForceProviderLackingInputThrows (1 ms) 6: [ RUN ] DensityFittingTest.SingleAtom -6: [ OK ] DensityFittingTest.SingleAtom (1 ms) -6: [----------] 2 tests from DensityFittingTest (2 ms total) +6: [ OK ] DensityFittingTest.SingleAtom (0 ms) +6: [----------] 2 tests from DensityFittingTest (1 ms total) 6: 6: [----------] 8 tests from DensityFittingOptionsTest 6: [ RUN ] DensityFittingOptionsTest.DefaultParameters @@ -113955,10 +114024,10 @@ 6: [ RUN ] DensityFittingOptionsTest.InternalsToKvt 6: [ OK ] DensityFittingOptionsTest.InternalsToKvt (0 ms) 6: [ RUN ] DensityFittingOptionsTest.KvtToInternal -6: [ OK ] DensityFittingOptionsTest.KvtToInternal (1 ms) +6: [ OK ] DensityFittingOptionsTest.KvtToInternal (0 ms) 6: [ RUN ] DensityFittingOptionsTest.RoundTripForInternalsIsIdempotent 6: [ OK ] DensityFittingOptionsTest.RoundTripForInternalsIsIdempotent (0 ms) -6: [----------] 8 tests from DensityFittingOptionsTest (1 ms total) +6: [----------] 8 tests from DensityFittingOptionsTest (0 ms total) 6: 6: [----------] 7 tests from DensityFittingAmplitudeLookupTest 6: [ RUN ] DensityFittingAmplitudeLookupTest.Unity @@ -113987,9 +114056,9 @@ 6: [----------] 3 tests from ElectricFieldTest (0 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 20 tests from 4 test cases ran. (3 ms total) +6: [==========] 20 tests from 4 test cases ran. (1 ms total) 6: [ PASSED ] 20 tests. - 6/30 Test #6: AppliedForcesUnitTest ............ Passed 0.19 sec + 6/30 Test #6: AppliedForcesUnitTest ............ Passed 0.56 sec test 7 Start 7: CommandLineUnitTests @@ -114003,12 +114072,12 @@ 7: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic 7: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 7: [ RUN ] CommandLineHelpModuleTest.ExportsHelp -7: [ OK ] CommandLineHelpModuleTest.ExportsHelp (1 ms) -7: [----------] 3 tests from CommandLineHelpModuleTest (2 ms total) +7: [ OK ] CommandLineHelpModuleTest.ExportsHelp (0 ms) +7: [----------] 3 tests from CommandLineHelpModuleTest (1 ms total) 7: 7: [----------] 7 tests from CommandLineHelpWriterTest 7: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes -7: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (1 ms) +7: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables 7: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions @@ -114016,12 +114085,12 @@ 7: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions 7: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups -7: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (1 ms) +7: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText 7: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesKnownIssues 7: [ OK ] CommandLineHelpWriterTest.HandlesKnownIssues (0 ms) -7: [----------] 7 tests from CommandLineHelpWriterTest (2 ms total) +7: [----------] 7 tests from CommandLineHelpWriterTest (1 ms total) 7: 7: [----------] 6 tests from CommandLineModuleManagerTest 7: [ RUN ] CommandLineModuleManagerTest.RunsModule @@ -114036,7 +114105,7 @@ 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 7: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) -7: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) +7: [----------] 6 tests from CommandLineModuleManagerTest (0 ms total) 7: 7: [----------] 13 tests from CommandLineParserTest 7: [ RUN ] CommandLineParserTest.HandlesSingleValues @@ -114065,11 +114134,11 @@ 7: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 7: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions 7: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms) -7: [----------] 13 tests from CommandLineParserTest (1 ms total) +7: [----------] 13 tests from CommandLineParserTest (0 ms total) 7: 7: [----------] 6 tests from CommandLineProgramContextTest 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath -7: [ OK ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath (0 ms) +7: [ OK ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath (1 ms) 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithRelativePath 7: [ OK ] CommandLineProgramContextTest.FindsBinaryWithRelativePath (0 ms) 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromPath @@ -114080,7 +114149,7 @@ 7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (0 ms) 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink 7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms) -7: [----------] 6 tests from CommandLineProgramContextTest (0 ms total) +7: [----------] 6 tests from CommandLineProgramContextTest (1 ms total) 7: 7: [----------] 3 tests from OutputNamesTest 7: [ RUN ] OutputNamesTest.CanBeSuffixed @@ -114131,15 +114200,15 @@ 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile 7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (0 ms) 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName -7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) +7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (0 ms) 7: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 7: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) -7: [----------] 21 tests from ParseCommonArgsTest (2 ms total) +7: [----------] 21 tests from ParseCommonArgsTest (0 ms total) 7: 7: [----------] Global test environment tear-down -7: [==========] 59 tests from 7 test cases ran. (8 ms total) +7: [==========] 59 tests from 7 test cases ran. (3 ms total) 7: [ PASSED ] 59 tests. - 7/30 Test #7: CommandLineUnitTests ............. Passed 0.20 sec + 7/30 Test #7: CommandLineUnitTests ............. Passed 0.54 sec test 8 Start 8: DomDecTests @@ -114172,9 +114241,9 @@ 8: [----------] 2 tests from LocalAtomSetManager (0 ms total) 8: 8: [----------] Global test environment tear-down -8: [==========] 9 tests from 2 test cases ran. (1 ms total) +8: [==========] 9 tests from 2 test cases ran. (0 ms total) 8: [ PASSED ] 9 tests. - 8/30 Test #8: DomDecTests ...................... Passed 0.19 sec + 8/30 Test #8: DomDecTests ...................... Passed 0.50 sec test 9 Start 9: EwaldUnitTests @@ -114184,75 +114253,75 @@ 9: [----------] Global test environment set-up. 9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (1 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (3 ms) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (1 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) -9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (3 ms total) +9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (2 ms total) 9: 9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (9 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (5 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (4 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (10 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (5 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (2 ms) -9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (36 ms total) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (5 ms) +9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (46 ms total) 9: 9: [----------] 144 tests from SaneInput/PmeGatherTest 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 @@ -114260,19 +114329,19 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 @@ -114282,11 +114351,11 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 @@ -114294,7 +114363,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 @@ -114316,11 +114385,11 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (8 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 @@ -114328,7 +114397,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 @@ -114352,7 +114421,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 @@ -114360,11 +114429,11 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 @@ -114374,11 +114443,11 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 @@ -114386,13 +114455,13 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 @@ -114400,7 +114469,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 @@ -114412,9 +114481,9 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 @@ -114424,7 +114493,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 @@ -114432,13 +114501,13 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 @@ -114450,9 +114519,9 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 @@ -114462,7 +114531,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (8 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 @@ -114474,7 +114543,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 @@ -114486,11 +114555,11 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 @@ -114502,11 +114571,11 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 @@ -114516,7 +114585,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 @@ -114526,16 +114595,16 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (0 ms) -9: [----------] 144 tests from SaneInput/PmeGatherTest (24 ms total) +9: [----------] 144 tests from SaneInput/PmeGatherTest (32 ms total) 9: 9: [----------] 16 tests from SaneInput/PmeSolveTest 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 @@ -114543,11 +114612,11 @@ 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 @@ -114557,11 +114626,11 @@ 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (8 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 @@ -114569,33 +114638,33 @@ 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (1 ms) -9: [----------] 16 tests from SaneInput/PmeSolveTest (8 ms total) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (0 ms) +9: [----------] 16 tests from SaneInput/PmeSolveTest (14 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (0 ms) 9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (2 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (0 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (0 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (0 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 @@ -114607,8 +114676,8 @@ 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (4 ms total) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (0 ms) +9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (3 ms total) 9: 9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 @@ -114616,23 +114685,23 @@ 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (8 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 @@ -114640,10 +114709,10 @@ 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) -9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (6 ms total) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (0 ms) +9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (14 ms total) 9: 9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 @@ -114659,22 +114728,22 @@ 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (0 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (0 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (0 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (0 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (0 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (0 ms) -9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (6 ms total) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) +9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (8 ms total) 9: 9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (0 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 @@ -114684,7 +114753,7 @@ 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (0 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 @@ -114692,44 +114761,44 @@ 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (0 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (0 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (0 ms) -9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (8 ms total) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (1 ms) +9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (9 ms total) 9: 9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (4 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) -9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (24 ms total) +9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (25 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 257 tests from 10 test cases ran. (132 ms total) +9: [==========] 257 tests from 10 test cases ran. (224 ms total) 9: [ PASSED ] 257 tests. - 9/30 Test #9: EwaldUnitTests ................... Passed 0.34 sec + 9/30 Test #9: EwaldUnitTests ................... Passed 0.64 sec test 10 Start 10: FFTUnitTests @@ -114739,48 +114808,48 @@ 10: [----------] Global test environment set-up. 10: [----------] 2 tests from ManyFFTTest 10: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (7 ms) +10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (2 ms) 10: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (10 ms) -10: [----------] 2 tests from ManyFFTTest (19 ms total) +10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (3 ms) +10: [----------] 2 tests from ManyFFTTest (15 ms total) 10: 10: [----------] 1 test from FFTTest 10: [ RUN ] FFTTest.Real2DLength18_15Test -10: [ OK ] FFTTest.Real2DLength18_15Test (3 ms) -10: [----------] 1 test from FFTTest (4 ms total) +10: [ OK ] FFTTest.Real2DLength18_15Test (2 ms) +10: [----------] 1 test from FFTTest (2 ms total) 10: 10: [----------] 1 test from FFFTest3D 10: [ RUN ] FFFTest3D.Real5_6_9 -10: [ OK ] FFFTest3D.Real5_6_9 (2 ms) -10: [----------] 1 test from FFFTest3D (2 ms total) +10: [ OK ] FFFTest3D.Real5_6_9 (1 ms) +10: [----------] 1 test from FFFTest3D (1 ms total) 10: 10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (5 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (5 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (2 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (6 ms) -10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (19 ms total) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (7 ms) +10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (16 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 14 tests from 4 test cases ran. (44 ms total) +10: [==========] 14 tests from 4 test cases ran. (34 ms total) 10: [ PASSED ] 14 tests. -10/30 Test #10: FFTUnitTests ..................... Passed 0.23 sec +10/30 Test #10: FFTUnitTests ..................... Passed 0.46 sec test 11 Start 11: GpuUtilsUnitTests @@ -114973,9 +115042,9 @@ 11: [----------] 4 tests from AllocatorTest/3 (0 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 62 tests from 20 test cases ran. (1 ms total) +11: [==========] 62 tests from 20 test cases ran. (0 ms total) 11: [ PASSED ] 62 tests. -11/30 Test #11: GpuUtilsUnitTests ................ Passed 0.19 sec +11/30 Test #11: GpuUtilsUnitTests ................ Passed 0.51 sec test 12 Start 12: HardwareUnitTests @@ -114985,19 +115054,19 @@ 12: [----------] Global test environment set-up. 12: [----------] 4 tests from HardwareTopologyTest 12: [ RUN ] HardwareTopologyTest.Execute -12: [ OK ] HardwareTopologyTest.Execute (8 ms) +12: [ OK ] HardwareTopologyTest.Execute (3 ms) 12: [ RUN ] HardwareTopologyTest.HwlocExecute -12: [ OK ] HardwareTopologyTest.HwlocExecute (7 ms) +12: [ OK ] HardwareTopologyTest.HwlocExecute (4 ms) 12: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency -12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (8 ms) +12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (11 ms) 12: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (7 ms) -12: [----------] 4 tests from HardwareTopologyTest (31 ms total) +12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (8 ms) +12: [----------] 4 tests from HardwareTopologyTest (26 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 4 tests from 1 test case ran. (31 ms total) +12: [==========] 4 tests from 1 test case ran. (26 ms total) 12: [ PASSED ] 4 tests. -12/30 Test #12: HardwareUnitTests ................ Passed 0.22 sec +12/30 Test #12: HardwareUnitTests ................ Passed 0.29 sec test 13 Start 13: MathUnitTests @@ -115048,16 +115117,16 @@ 13: [ RUN ] TranslateAndScaleTest.scalingIdentity 13: [ OK ] TranslateAndScaleTest.scalingIdentity (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingNonTrivial -13: [ OK ] TranslateAndScaleTest.scalingNonTrivial (1 ms) +13: [ OK ] TranslateAndScaleTest.scalingNonTrivial (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingInverseNoZero 13: [ OK ] TranslateAndScaleTest.scalingInverseNoZero (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingInverseWithOneScaleDimensionZero 13: [ OK ] TranslateAndScaleTest.scalingInverseWithOneScaleDimensionZero (0 ms) -13: [----------] 8 tests from TranslateAndScaleTest (1 ms total) +13: [----------] 8 tests from TranslateAndScaleTest (0 ms total) 13: 13: [----------] 12 tests from DensitySimilarityTest 13: [ RUN ] DensitySimilarityTest.InnerProductIsCorrect -13: [ OK ] DensitySimilarityTest.InnerProductIsCorrect (0 ms) +13: [ OK ] DensitySimilarityTest.InnerProductIsCorrect (1 ms) 13: [ RUN ] DensitySimilarityTest.InnerProductGradientIsCorrect 13: [ OK ] DensitySimilarityTest.InnerProductGradientIsCorrect (0 ms) 13: [ RUN ] DensitySimilarityTest.GradientThrowsIfDensitiesDontMatch @@ -115073,14 +115142,14 @@ 13: [ RUN ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect 13: [ OK ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect (0 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsOne -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (21 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (17 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (17 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (20 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (20 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (23 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect 13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect (0 ms) -13: [----------] 12 tests from DensitySimilarityTest (59 ms total) +13: [----------] 12 tests from DensitySimilarityTest (62 ms total) 13: 13: [----------] 6 tests from StructureSimilarityTest 13: [ RUN ] StructureSimilarityTest.StructureComparedToSelfHasZeroRMSD @@ -115128,7 +115197,7 @@ 13: [ RUN ] FunctionTest.InvsqrtFloat 13: [ OK ] FunctionTest.InvsqrtFloat (0 ms) 13: [ RUN ] FunctionTest.InvsqrtDouble -13: [ OK ] FunctionTest.InvsqrtDouble (1 ms) +13: [ OK ] FunctionTest.InvsqrtDouble (0 ms) 13: [ RUN ] FunctionTest.InvsqrtInteger 13: [ OK ] FunctionTest.InvsqrtInteger (0 ms) 13: [ RUN ] FunctionTest.InvcbrtFloat @@ -115158,19 +115227,19 @@ 13: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 13: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 13: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble -13: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) +13: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (1 ms) 13: [----------] 21 tests from FunctionTest (1 ms total) 13: 13: [----------] 4 tests from GaussianOn1DLattice 13: [ RUN ] GaussianOn1DLattice.sumsCloseToOne -13: [ OK ] GaussianOn1DLattice.sumsCloseToOne (1 ms) +13: [ OK ] GaussianOn1DLattice.sumsCloseToOne (0 ms) 13: [ RUN ] GaussianOn1DLattice.isCorrect 13: [ OK ] GaussianOn1DLattice.isCorrect (0 ms) 13: [ RUN ] GaussianOn1DLattice.complementaryAmplitudesSumToZero 13: [ OK ] GaussianOn1DLattice.complementaryAmplitudesSumToZero (0 ms) 13: [ RUN ] GaussianOn1DLattice.doesNotOverflowForLargeRange 13: [ OK ] GaussianOn1DLattice.doesNotOverflowForLargeRange (0 ms) -13: [----------] 4 tests from GaussianOn1DLattice (1 ms total) +13: [----------] 4 tests from GaussianOn1DLattice (0 ms total) 13: 13: [----------] 9 tests from GaussTransformTest 13: [ RUN ] GaussTransformTest.isZeroUponConstruction @@ -115300,7 +115369,7 @@ 13: [ OK ] MultiDimArrayTest.constViewConstBegin (0 ms) 13: [ RUN ] MultiDimArrayTest.constViewConstEnd 13: [ OK ] MultiDimArrayTest.constViewConstEnd (0 ms) -13: [----------] 25 tests from MultiDimArrayTest (0 ms total) +13: [----------] 25 tests from MultiDimArrayTest (8 ms total) 13: 13: [----------] 4 tests from MultiDimArrayToMdSpanTest 13: [ RUN ] MultiDimArrayToMdSpanTest.convertsToMdSpan @@ -115365,8 +115434,8 @@ 13: [ RUN ] PaddedVectorTest/4.CanMoveAssign 13: [ OK ] PaddedVectorTest/4.CanMoveAssign (0 ms) 13: [ RUN ] PaddedVectorTest/4.CanSwap -13: [ OK ] PaddedVectorTest/4.CanSwap (1 ms) -13: [----------] 4 tests from PaddedVectorTest/4 (1 ms total) +13: [ OK ] PaddedVectorTest/4.CanSwap (0 ms) +13: [----------] 4 tests from PaddedVectorTest/4 (0 ms total) 13: 13: [----------] 4 tests from PaddedVectorTest/5, where TypeParam = gmx::Allocator 13: [ RUN ] PaddedVectorTest/5.ConstructsResizesAndReserves @@ -115388,7 +115457,7 @@ 13: [ OK ] PaddedVectorTest/6.CanMoveAssign (0 ms) 13: [ RUN ] PaddedVectorTest/6.CanSwap 13: [ OK ] PaddedVectorTest/6.CanSwap (0 ms) -13: [----------] 4 tests from PaddedVectorTest/6 (0 ms total) +13: [----------] 4 tests from PaddedVectorTest/6 (1 ms total) 13: 13: [----------] 4 tests from PaddedVectorTest/7, where TypeParam = gmx::Allocator 13: [ RUN ] PaddedVectorTest/7.ConstructsResizesAndReserves @@ -115501,9 +115570,9 @@ 13: [----------] 37 tests from RVecTest (0 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 204 tests from 29 test cases ran. (63 ms total) +13: [==========] 204 tests from 29 test cases ran. (72 ms total) 13: [ PASSED ] 204 tests. -13/30 Test #13: MathUnitTests .................... Passed 0.26 sec +13/30 Test #13: MathUnitTests .................... Passed 0.66 sec test 14 Start 14: MdrunUtilityUnitTests @@ -115513,7 +115582,7 @@ 14: [----------] Global test environment set-up. 14: [----------] 17 tests from ThreadAffinityTest 14: [ RUN ] ThreadAffinityTest.DoesNothingWhenDisabled -14: [ OK ] ThreadAffinityTest.DoesNothingWhenDisabled (1 ms) +14: [ OK ] ThreadAffinityTest.DoesNothingWhenDisabled (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWhenNotSupported 14: [ OK ] ThreadAffinityTest.DoesNothingWhenNotSupported (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads @@ -115527,33 +115596,33 @@ 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 14: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset -14: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (1 ms) +14: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 14: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto -14: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (0 ms) +14: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (1 ms) 14: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced 14: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced -14: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (1 ms) +14: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (0 ms) 14: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread 14: NOTE: Affinity setting failed. 14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto -14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (1 ms) +14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (10 ms) 14: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced 14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads -14: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (0 ms) +14: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (4 ms) 14: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 14: NOTE: Affinity setting for 1/2 threads failed. -14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (1 ms) -14: [----------] 17 tests from ThreadAffinityTest (5 ms total) +14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (8 ms) +14: [----------] 17 tests from ThreadAffinityTest (23 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 17 tests from 1 test case ran. (5 ms total) +14: [==========] 17 tests from 1 test case ran. (23 ms total) 14: [ PASSED ] 17 tests. -14/30 Test #14: MdrunUtilityUnitTests ............ Passed 0.19 sec +14/30 Test #14: MdrunUtilityUnitTests ............ Passed 0.57 sec test 15 Start 15: MdrunUtilityMpiUnitTests @@ -115580,23 +115649,23 @@ 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly 15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (0 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (1 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (0 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (0 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (1 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (0 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (0 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (1 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (0 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (0 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (1 ms) 15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (3 ms total) 15: 15: [----------] Global test environment tear-down -15: [==========] 13 tests from 2 test cases ran. (6 ms total) +15: [==========] 13 tests from 2 test cases ran. (7 ms total) 15: [ PASSED ] 13 tests. -15/30 Test #15: MdrunUtilityMpiUnitTests ......... Passed 0.22 sec +15/30 Test #15: MdrunUtilityMpiUnitTests ......... Passed 0.41 sec test 16 Start 16: MDSpanTests @@ -115692,7 +115761,7 @@ 16: [----------] Global test environment tear-down 16: [==========] 32 tests from 7 test cases ran. (0 ms total) 16: [ PASSED ] 32 tests. -16/30 Test #16: MDSpanTests ...................... Passed 0.19 sec +16/30 Test #16: MDSpanTests ...................... Passed 0.37 sec test 17 Start 17: OnlineHelpUnitTests @@ -115721,8 +115790,8 @@ 17: [ RUN ] HelpManagerTest.HandlesSubTopics 17: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 17: [ RUN ] HelpManagerTest.HandlesInvalidTopics -17: [ OK ] HelpManagerTest.HandlesInvalidTopics (1 ms) -17: [----------] 3 tests from HelpManagerTest (1 ms total) +17: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) +17: [----------] 3 tests from HelpManagerTest (0 ms total) 17: 17: [----------] 2 tests from HelpTopicFormattingTest 17: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic @@ -115733,7 +115802,7 @@ 17: 17: [----------] 11 tests from HelpWriterContextTest 17: [ RUN ] HelpWriterContextTest.FormatsParagraphs -17: [ OK ] HelpWriterContextTest.FormatsParagraphs (0 ms) +17: [ OK ] HelpWriterContextTest.FormatsParagraphs (1 ms) 17: [ RUN ] HelpWriterContextTest.FormatsRstStyleParagraphs 17: [ OK ] HelpWriterContextTest.FormatsRstStyleParagraphs (0 ms) 17: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace @@ -115745,7 +115814,7 @@ 17: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation 17: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsBulletList -17: [ OK ] HelpWriterContextTest.FormatsBulletList (1 ms) +17: [ OK ] HelpWriterContextTest.FormatsBulletList (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList 17: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsSimpleTable @@ -115757,9 +115826,9 @@ 17: [----------] 11 tests from HelpWriterContextTest (1 ms total) 17: 17: [----------] Global test environment tear-down -17: [==========] 22 tests from 4 test cases ran. (3 ms total) +17: [==========] 22 tests from 4 test cases ran. (1 ms total) 17: [ PASSED ] 22 tests. -17/30 Test #17: OnlineHelpUnitTests .............. Passed 0.19 sec +17/30 Test #17: OnlineHelpUnitTests .............. Passed 0.39 sec test 18 Start 18: OptionsUnitTests @@ -115769,13 +115838,13 @@ 18: [----------] Global test environment set-up. 18: [----------] 5 tests from AbstractOptionStorageTest 18: [ RUN ] AbstractOptionStorageTest.HandlesSetInFinish -18: [ OK ] AbstractOptionStorageTest.HandlesSetInFinish (1 ms) +18: [ OK ] AbstractOptionStorageTest.HandlesSetInFinish (0 ms) 18: [ RUN ] AbstractOptionStorageTest.HandlesValueRemoval 18: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (0 ms) 18: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition 18: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) 18: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition -18: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (0 ms) +18: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (1 ms) 18: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues 18: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) 18: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) @@ -115784,7 +115853,7 @@ 18: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension 18: [ OK ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension (0 ms) 18: [ RUN ] FileNameOptionTest.HandlesRequiredOptionWithoutValue -18: [ OK ] FileNameOptionTest.HandlesRequiredOptionWithoutValue (1 ms) +18: [ OK ] FileNameOptionTest.HandlesRequiredOptionWithoutValue (0 ms) 18: [ RUN ] FileNameOptionTest.HandlesOptionalUnsetOption 18: [ OK ] FileNameOptionTest.HandlesOptionalUnsetOption (0 ms) 18: [ RUN ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension @@ -115797,7 +115866,7 @@ 18: [ OK ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix (0 ms) 18: [ RUN ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix 18: [ OK ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix (0 ms) -18: [----------] 8 tests from FileNameOptionTest (1 ms total) +18: [----------] 8 tests from FileNameOptionTest (0 ms total) 18: 18: [----------] 15 tests from FileNameOptionManagerTest 18: [ RUN ] FileNameOptionManagerTest.AddsMissingExtension @@ -115827,10 +115896,10 @@ 18: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile 18: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile (0 ms) 18: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile -18: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (1 ms) +18: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 18: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 18: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) -18: [----------] 15 tests from FileNameOptionManagerTest (1 ms total) +18: [----------] 15 tests from FileNameOptionManagerTest (0 ms total) 18: 18: [----------] 1 test from OptionsTest 18: [ RUN ] OptionsTest.FailsOnNonsafeStorage @@ -115895,8 +115964,8 @@ 18: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue 18: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 18: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment -18: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (1 ms) -18: [----------] 13 tests from OptionsAssignerIntegerTest (1 ms total) +18: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms) +18: [----------] 13 tests from OptionsAssignerIntegerTest (0 ms total) 18: 18: [----------] 5 tests from OptionsAssignerDoubleTest 18: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue @@ -115998,14 +116067,14 @@ 18: [ RUN ] TreeValueSupportCheckTest.HandlesEmpty 18: [ OK ] TreeValueSupportCheckTest.HandlesEmpty (0 ms) 18: [ RUN ] TreeValueSupportCheckTest.HandlesMatchingTree -18: [ OK ] TreeValueSupportCheckTest.HandlesMatchingTree (1 ms) +18: [ OK ] TreeValueSupportCheckTest.HandlesMatchingTree (0 ms) 18: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree1 18: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree1 (0 ms) 18: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree2 18: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree2 (0 ms) 18: [ RUN ] TreeValueSupportCheckTest.DetectsExtraValue 18: [ OK ] TreeValueSupportCheckTest.DetectsExtraValue (0 ms) -18: [----------] 5 tests from TreeValueSupportCheckTest (1 ms total) +18: [----------] 5 tests from TreeValueSupportCheckTest (0 ms total) 18: 18: [----------] 6 tests from TreeValueSupportAdjustTest 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues @@ -116039,12 +116108,12 @@ 18: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsEnumOption 18: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) -18: [----------] 8 tests from TreeValueSupportTest (1 ms total) +18: [----------] 8 tests from TreeValueSupportTest (0 ms total) 18: 18: [----------] Global test environment tear-down -18: [==========] 110 tests from 18 test cases ran. (6 ms total) +18: [==========] 110 tests from 18 test cases ran. (2 ms total) 18: [ PASSED ] 110 tests. -18/30 Test #18: OptionsUnitTests ................. Passed 0.20 sec +18/30 Test #18: OptionsUnitTests ................. Passed 0.24 sec test 19 Start 19: PbcutilUnitTest @@ -116054,8 +116123,8 @@ 19: [----------] Global test environment set-up. 19: [----------] 1 test from PbcTest 19: [ RUN ] PbcTest.CalcShiftsWorks -19: [ OK ] PbcTest.CalcShiftsWorks (1 ms) -19: [----------] 1 test from PbcTest (1 ms total) +19: [ OK ] PbcTest.CalcShiftsWorks (0 ms) +19: [----------] 1 test from PbcTest (0 ms total) 19: 19: [----------] 2 tests from PbcEnumsTest 19: [ RUN ] PbcEnumsTest.CenteringTypeNamesAreCorrect @@ -116065,9 +116134,9 @@ 19: [----------] 2 tests from PbcEnumsTest (0 ms total) 19: 19: [----------] Global test environment tear-down -19: [==========] 3 tests from 2 test cases ran. (1 ms total) +19: [==========] 3 tests from 2 test cases ran. (0 ms total) 19: [ PASSED ] 3 tests. -19/30 Test #19: PbcutilUnitTest .................. Passed 0.16 sec +19/30 Test #19: PbcutilUnitTest .................. Passed 0.34 sec test 20 Start 20: RandomUnitTests @@ -116088,14 +116157,14 @@ 20: 20: [----------] 4 tests from GammaDistributionTest 20: [ RUN ] GammaDistributionTest.Output -20: [ OK ] GammaDistributionTest.Output (1 ms) +20: [ OK ] GammaDistributionTest.Output (0 ms) 20: [ RUN ] GammaDistributionTest.Logical 20: [ OK ] GammaDistributionTest.Logical (0 ms) 20: [ RUN ] GammaDistributionTest.Reset 20: [ OK ] GammaDistributionTest.Reset (0 ms) 20: [ RUN ] GammaDistributionTest.AltParam 20: [ OK ] GammaDistributionTest.AltParam (0 ms) -20: [----------] 4 tests from GammaDistributionTest (1 ms total) +20: [----------] 4 tests from GammaDistributionTest (0 ms total) 20: 20: [----------] 4 tests from NormalDistributionTest 20: [ RUN ] NormalDistributionTest.Output @@ -116130,8 +116199,8 @@ 20: 20: [----------] 1 test from TabulatedNormalDistributionTableTest 20: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties -20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (2 ms) -20: [----------] 1 test from TabulatedNormalDistributionTableTest (2 ms total) +20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (1 ms) +20: [----------] 1 test from TabulatedNormalDistributionTableTest (1 ms total) 20: 20: [----------] 6 tests from ThreeFry2x64Test 20: [ RUN ] ThreeFry2x64Test.Logical @@ -116163,14 +116232,14 @@ 20: [ RUN ] UniformRealDistributionTest.GenerateCanonical 20: [ OK ] UniformRealDistributionTest.GenerateCanonical (0 ms) 20: [ RUN ] UniformRealDistributionTest.Output -20: [ OK ] UniformRealDistributionTest.Output (1 ms) +20: [ OK ] UniformRealDistributionTest.Output (0 ms) 20: [ RUN ] UniformRealDistributionTest.Logical 20: [ OK ] UniformRealDistributionTest.Logical (0 ms) 20: [ RUN ] UniformRealDistributionTest.Reset 20: [ OK ] UniformRealDistributionTest.Reset (0 ms) 20: [ RUN ] UniformRealDistributionTest.AltParam 20: [ OK ] UniformRealDistributionTest.AltParam (0 ms) -20: [----------] 5 tests from UniformRealDistributionTest (1 ms total) +20: [----------] 5 tests from UniformRealDistributionTest (0 ms total) 20: 20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 @@ -116194,9 +116263,9 @@ 20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (0 ms total) 20: 20: [----------] Global test environment tear-down -20: [==========] 44 tests from 10 test cases ran. (4 ms total) +20: [==========] 44 tests from 10 test cases ran. (1 ms total) 20: [ PASSED ] 44 tests. -20/30 Test #20: RandomUnitTests .................. Passed 0.20 sec +20/30 Test #20: RandomUnitTests .................. Passed 0.32 sec test 21 Start 21: RestraintTests @@ -116212,7 +116281,7 @@ 21: [----------] Global test environment tear-down 21: [==========] 1 test from 1 test case ran. (0 ms total) 21: [ PASSED ] 1 test. -21/30 Test #21: RestraintTests ................... Passed 0.19 sec +21/30 Test #21: RestraintTests ................... Passed 0.26 sec test 22 Start 22: TableUnitTests @@ -116222,54 +116291,54 @@ 22: [----------] Global test environment set-up. 22: [----------] 10 tests from SplineTableTest/0, where TypeParam = gmx::QuadraticSplineTable 22: [ RUN ] SplineTableTest/0.HandlesIncorrectInput -22: [ OK ] SplineTableTest/0.HandlesIncorrectInput (1 ms) +22: [ OK ] SplineTableTest/0.HandlesIncorrectInput (0 ms) 22: [ RUN ] SplineTableTest/0.Sinc 22: [ OK ] SplineTableTest/0.Sinc (1 ms) 22: [ RUN ] SplineTableTest/0.LJ12 -22: [ OK ] SplineTableTest/0.LJ12 (13 ms) +22: [ OK ] SplineTableTest/0.LJ12 (6 ms) 22: [ RUN ] SplineTableTest/0.PmeCorrection -22: [ OK ] SplineTableTest/0.PmeCorrection (1 ms) +22: [ OK ] SplineTableTest/0.PmeCorrection (8 ms) 22: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput -22: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms) +22: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (0 ms) 22: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr 22: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (1 ms) 22: [ RUN ] SplineTableTest/0.TwoFunctions -22: [ OK ] SplineTableTest/0.TwoFunctions (21 ms) +22: [ OK ] SplineTableTest/0.TwoFunctions (17 ms) 22: [ RUN ] SplineTableTest/0.ThreeFunctions 22: [ OK ] SplineTableTest/0.ThreeFunctions (18 ms) 22: [ RUN ] SplineTableTest/0.Simd -22: [ OK ] SplineTableTest/0.Simd (3 ms) +22: [ OK ] SplineTableTest/0.Simd (2 ms) 22: [ RUN ] SplineTableTest/0.SimdTwoFunctions -22: [ OK ] SplineTableTest/0.SimdTwoFunctions (12 ms) -22: [----------] 10 tests from SplineTableTest/0 (72 ms total) +22: [ OK ] SplineTableTest/0.SimdTwoFunctions (16 ms) +22: [----------] 10 tests from SplineTableTest/0 (77 ms total) 22: 22: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 22: [ RUN ] SplineTableTest/1.HandlesIncorrectInput -22: [ OK ] SplineTableTest/1.HandlesIncorrectInput (0 ms) +22: [ OK ] SplineTableTest/1.HandlesIncorrectInput (1 ms) 22: [ RUN ] SplineTableTest/1.Sinc -22: [ OK ] SplineTableTest/1.Sinc (1 ms) +22: [ OK ] SplineTableTest/1.Sinc (0 ms) 22: [ RUN ] SplineTableTest/1.LJ12 22: [ OK ] SplineTableTest/1.LJ12 (1 ms) 22: [ RUN ] SplineTableTest/1.PmeCorrection -22: [ OK ] SplineTableTest/1.PmeCorrection (0 ms) +22: [ OK ] SplineTableTest/1.PmeCorrection (8 ms) 22: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput -22: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) +22: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (0 ms) 22: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr -22: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (0 ms) +22: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (1 ms) 22: [ RUN ] SplineTableTest/1.TwoFunctions 22: [ OK ] SplineTableTest/1.TwoFunctions (1 ms) 22: [ RUN ] SplineTableTest/1.ThreeFunctions -22: [ OK ] SplineTableTest/1.ThreeFunctions (2 ms) +22: [ OK ] SplineTableTest/1.ThreeFunctions (1 ms) 22: [ RUN ] SplineTableTest/1.Simd 22: [ OK ] SplineTableTest/1.Simd (1 ms) 22: [ RUN ] SplineTableTest/1.SimdTwoFunctions -22: [ OK ] SplineTableTest/1.SimdTwoFunctions (1 ms) -22: [----------] 10 tests from SplineTableTest/1 (8 ms total) +22: [ OK ] SplineTableTest/1.SimdTwoFunctions (9 ms) +22: [----------] 10 tests from SplineTableTest/1 (23 ms total) 22: 22: [----------] Global test environment tear-down -22: [==========] 20 tests from 2 test cases ran. (81 ms total) +22: [==========] 20 tests from 2 test cases ran. (100 ms total) 22: [ PASSED ] 20 tests. -22/30 Test #22: TableUnitTests ................... Passed 0.27 sec +22/30 Test #22: TableUnitTests ................... Passed 0.38 sec test 23 Start 23: TaskAssignmentUnitTests @@ -116286,13 +116355,13 @@ 23: 23: [----------] 1 test from GpuIdAndAssignmentStringHandlingTest 23: [ RUN ] GpuIdAndAssignmentStringHandlingTest.InvalidInputsThrow -23: [ OK ] GpuIdAndAssignmentStringHandlingTest.InvalidInputsThrow (1 ms) -23: [----------] 1 test from GpuIdAndAssignmentStringHandlingTest (1 ms total) +23: [ OK ] GpuIdAndAssignmentStringHandlingTest.InvalidInputsThrow (0 ms) +23: [----------] 1 test from GpuIdAndAssignmentStringHandlingTest (0 ms total) 23: 23: [----------] Global test environment tear-down -23: [==========] 3 tests from 2 test cases ran. (1 ms total) +23: [==========] 3 tests from 2 test cases ran. (0 ms total) 23: [ PASSED ] 3 tests. -23/30 Test #23: TaskAssignmentUnitTests .......... Passed 0.19 sec +23/30 Test #23: TaskAssignmentUnitTests .......... Passed 0.42 sec test 24 Start 24: TopologyTest @@ -116311,10 +116380,10 @@ 24: 24: [----------] 2 tests from MtopTest 24: [ RUN ] MtopTest.RangeBasedLoop -24: [ OK ] MtopTest.RangeBasedLoop (1 ms) +24: [ OK ] MtopTest.RangeBasedLoop (0 ms) 24: [ RUN ] MtopTest.Operators 24: [ OK ] MtopTest.Operators (0 ms) -24: [----------] 2 tests from MtopTest (1 ms total) +24: [----------] 2 tests from MtopTest (0 ms total) 24: 24: [----------] 6 tests from SymtabTest 24: [ RUN ] SymtabTest.EmptyOnOpen @@ -116332,9 +116401,9 @@ 24: [----------] 6 tests from SymtabTest (0 ms total) 24: 24: [----------] Global test environment tear-down -24: [==========] 11 tests from 3 test cases ran. (1 ms total) +24: [==========] 11 tests from 3 test cases ran. (0 ms total) 24: [ PASSED ] 11 tests. -24/30 Test #24: TopologyTest ..................... Passed 0.19 sec +24/30 Test #24: TopologyTest ..................... Passed 0.32 sec test 25 Start 25: PullTest @@ -116356,9 +116425,9 @@ 25: [----------] 5 tests from PullTest (0 ms total) 25: 25: [----------] Global test environment tear-down -25: [==========] 5 tests from 1 test case ran. (1 ms total) +25: [==========] 5 tests from 1 test case ran. (0 ms total) 25: [ PASSED ] 5 tests. -25/30 Test #25: PullTest ......................... Passed 0.19 sec +25/30 Test #25: PullTest ......................... Passed 0.35 sec test 26 Start 26: AwhTest @@ -116368,19 +116437,19 @@ 26: [----------] Global test environment set-up. 26: [----------] 1 test from BiasTest 26: [ RUN ] BiasTest.DetectsCovering -26: [ OK ] BiasTest.DetectsCovering (1 ms) -26: [----------] 1 test from BiasTest (1 ms total) +26: [ OK ] BiasTest.DetectsCovering (0 ms) +26: [----------] 1 test from BiasTest (0 ms total) 26: 26: [----------] 1 test from gridTest 26: [ RUN ] gridTest.neighborhood -26: [ OK ] gridTest.neighborhood (2 ms) -26: [----------] 1 test from gridTest (2 ms total) +26: [ OK ] gridTest.neighborhood (1 ms) +26: [----------] 1 test from gridTest (1 ms total) 26: 26: [----------] 8 tests from WithParameters/BiasTest 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (1 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 @@ -116393,7 +116462,7 @@ 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (0 ms) -26: [----------] 8 tests from WithParameters/BiasTest (4 ms total) +26: [----------] 8 tests from WithParameters/BiasTest (1 ms total) 26: 26: [----------] 2 tests from WithParameters/BiasStateTest 26: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 @@ -116403,9 +116472,9 @@ 26: [----------] 2 tests from WithParameters/BiasStateTest (0 ms total) 26: 26: [----------] Global test environment tear-down -26: [==========] 12 tests from 4 test cases ran. (7 ms total) +26: [==========] 12 tests from 4 test cases ran. (2 ms total) 26: [ PASSED ] 12 tests. -26/30 Test #26: AwhTest .......................... Passed 0.20 sec +26/30 Test #26: AwhTest .......................... Passed 0.50 sec test 27 Start 27: SimdUnitTests @@ -116443,7 +116512,7 @@ 27: [ RUN ] SimdFloatingpointTest.setZero 27: [ OK ] SimdFloatingpointTest.setZero (0 ms) 27: [ RUN ] SimdFloatingpointTest.set -27: [ OK ] SimdFloatingpointTest.set (0 ms) +27: [ OK ] SimdFloatingpointTest.set (1 ms) 27: [ RUN ] SimdFloatingpointTest.add 27: [ OK ] SimdFloatingpointTest.add (0 ms) 27: [ RUN ] SimdFloatingpointTest.maskAdd @@ -116463,7 +116532,7 @@ 27: [ RUN ] SimdFloatingpointTest.fnma 27: [ OK ] SimdFloatingpointTest.fnma (0 ms) 27: [ RUN ] SimdFloatingpointTest.fnms -27: [ OK ] SimdFloatingpointTest.fnms (1 ms) +27: [ OK ] SimdFloatingpointTest.fnms (0 ms) 27: [ RUN ] SimdFloatingpointTest.abs 27: [ OK ] SimdFloatingpointTest.abs (0 ms) 27: [ RUN ] SimdFloatingpointTest.neg @@ -116572,7 +116641,7 @@ 27: 27: [----------] 56 tests from SimdMathTest 27: [ RUN ] SimdMathTest.generateTestPointsFloat -27: [ OK ] SimdMathTest.generateTestPointsFloat (1 ms) +27: [ OK ] SimdMathTest.generateTestPointsFloat (0 ms) 27: [ RUN ] SimdMathTest.copysign 27: [ OK ] SimdMathTest.copysign (0 ms) 27: [ RUN ] SimdMathTest.invsqrt @@ -116582,27 +116651,27 @@ 27: [ RUN ] SimdMathTest.invsqrtPair 27: [ OK ] SimdMathTest.invsqrtPair (1 ms) 27: [ RUN ] SimdMathTest.sqrt -27: [ OK ] SimdMathTest.sqrt (1 ms) +27: [ OK ] SimdMathTest.sqrt (0 ms) 27: [ RUN ] SimdMathTest.sqrtUnsafe -27: [ OK ] SimdMathTest.sqrtUnsafe (1 ms) +27: [ OK ] SimdMathTest.sqrtUnsafe (0 ms) 27: [ RUN ] SimdMathTest.inv 27: [ OK ] SimdMathTest.inv (1 ms) 27: [ RUN ] SimdMathTest.maskzInv 27: [ OK ] SimdMathTest.maskzInv (0 ms) 27: [ RUN ] SimdMathTest.cbrt -27: [ OK ] SimdMathTest.cbrt (1 ms) +27: [ OK ] SimdMathTest.cbrt (8 ms) 27: [ RUN ] SimdMathTest.invcbrt -27: [ OK ] SimdMathTest.invcbrt (2 ms) +27: [ OK ] SimdMathTest.invcbrt (1 ms) 27: [ RUN ] SimdMathTest.log2 -27: [ OK ] SimdMathTest.log2 (1 ms) +27: [ OK ] SimdMathTest.log2 (0 ms) 27: [ RUN ] SimdMathTest.log 27: [ OK ] SimdMathTest.log (0 ms) 27: [ RUN ] SimdMathTest.exp2 -27: [ OK ] SimdMathTest.exp2 (2 ms) +27: [ OK ] SimdMathTest.exp2 (1 ms) 27: [ RUN ] SimdMathTest.exp2Unsafe -27: [ OK ] SimdMathTest.exp2Unsafe (1 ms) +27: [ OK ] SimdMathTest.exp2Unsafe (0 ms) 27: [ RUN ] SimdMathTest.exp -27: [ OK ] SimdMathTest.exp (2 ms) +27: [ OK ] SimdMathTest.exp (1 ms) 27: [ RUN ] SimdMathTest.expUnsafe 27: [ OK ] SimdMathTest.expUnsafe (0 ms) 27: [ RUN ] SimdMathTest.pow @@ -116614,13 +116683,13 @@ 27: [ RUN ] SimdMathTest.erfc 27: [ OK ] SimdMathTest.erfc (1 ms) 27: [ RUN ] SimdMathTest.sin -27: [ OK ] SimdMathTest.sin (1 ms) +27: [ OK ] SimdMathTest.sin (0 ms) 27: [ RUN ] SimdMathTest.cos -27: [ OK ] SimdMathTest.cos (1 ms) +27: [ OK ] SimdMathTest.cos (8 ms) 27: [ RUN ] SimdMathTest.tan 27: [ OK ] SimdMathTest.tan (1 ms) 27: [ RUN ] SimdMathTest.asin -27: [ OK ] SimdMathTest.asin (1 ms) +27: [ OK ] SimdMathTest.asin (0 ms) 27: [ RUN ] SimdMathTest.acos 27: [ OK ] SimdMathTest.acos (0 ms) 27: [ RUN ] SimdMathTest.atan @@ -116628,35 +116697,35 @@ 27: [ RUN ] SimdMathTest.atan2 27: [ OK ] SimdMathTest.atan2 (0 ms) 27: [ RUN ] SimdMathTest.pmeForceCorrection -27: [ OK ] SimdMathTest.pmeForceCorrection (1 ms) +27: [ OK ] SimdMathTest.pmeForceCorrection (0 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrection -27: [ OK ] SimdMathTest.pmePotentialCorrection (1 ms) +27: [ OK ] SimdMathTest.pmePotentialCorrection (0 ms) 27: [ RUN ] SimdMathTest.invsqrtSingleAccuracy -27: [ OK ] SimdMathTest.invsqrtSingleAccuracy (0 ms) +27: [ OK ] SimdMathTest.invsqrtSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy -27: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracy -27: [ OK ] SimdMathTest.sqrtSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.sqrtSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe 27: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.invSingleAccuracy 27: [ OK ] SimdMathTest.invSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.cbrtSingleAccuracy -27: [ OK ] SimdMathTest.cbrtSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.cbrtSingleAccuracy (4 ms) 27: [ RUN ] SimdMathTest.invcbrtSingleAccuracy -27: [ OK ] SimdMathTest.invcbrtSingleAccuracy (2 ms) +27: [ OK ] SimdMathTest.invcbrtSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.log2SingleAccuracy -27: [ OK ] SimdMathTest.log2SingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.log2SingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.logSingleAccuracy -27: [ OK ] SimdMathTest.logSingleAccuracy (0 ms) +27: [ OK ] SimdMathTest.logSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracy -27: [ OK ] SimdMathTest.exp2SingleAccuracy (2 ms) +27: [ OK ] SimdMathTest.exp2SingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe 27: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracy 27: [ OK ] SimdMathTest.expSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe -27: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) +27: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.powSingleAccuracy 27: [ OK ] SimdMathTest.powSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.powSingleAccuracyUnsafe @@ -116666,24 +116735,24 @@ 27: [ RUN ] SimdMathTest.erfcSingleAccuracy 27: [ OK ] SimdMathTest.erfcSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.sinSingleAccuracy -27: [ OK ] SimdMathTest.sinSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.sinSingleAccuracy (12 ms) 27: [ RUN ] SimdMathTest.cosSingleAccuracy 27: [ OK ] SimdMathTest.cosSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.tanSingleAccuracy -27: [ OK ] SimdMathTest.tanSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.tanSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.asinSingleAccuracy 27: [ OK ] SimdMathTest.asinSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.acosSingleAccuracy 27: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.atanSingleAccuracy -27: [ OK ] SimdMathTest.atanSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.atanSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.atan2SingleAccuracy 27: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy 27: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy 27: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (1 ms) -27: [----------] 56 tests from SimdMathTest (43 ms total) +27: [----------] 56 tests from SimdMathTest (49 ms total) 27: 27: [----------] 1 test from EmptyArrayRefTest 27: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -116855,12 +116924,12 @@ 27: [ RUN ] Simd4FloatingpointTest.blend 27: [ OK ] Simd4FloatingpointTest.blend (0 ms) 27: [ RUN ] Simd4FloatingpointTest.reduce -27: [ OK ] Simd4FloatingpointTest.reduce (1 ms) +27: [ OK ] Simd4FloatingpointTest.reduce (0 ms) 27: [ RUN ] Simd4FloatingpointTest.dotProduct 27: [ OK ] Simd4FloatingpointTest.dotProduct (0 ms) 27: [ RUN ] Simd4FloatingpointTest.transpose 27: [ OK ] Simd4FloatingpointTest.transpose (0 ms) -27: [----------] 32 tests from Simd4FloatingpointTest (1 ms total) +27: [----------] 32 tests from Simd4FloatingpointTest (0 ms total) 27: 27: [----------] 1 test from Simd4VectorOperationsTest 27: [ RUN ] Simd4VectorOperationsTest.norm2 @@ -117056,9 +117125,9 @@ 27: [----------] 37 tests from SimdScalarMathTest (0 ms total) 27: 27: [----------] Global test environment tear-down -27: [==========] 288 tests from 22 test cases ran. (45 ms total) +27: [==========] 288 tests from 22 test cases ran. (50 ms total) 27: [ PASSED ] 288 tests. -27/30 Test #27: SimdUnitTests .................... Passed 0.24 sec +27/30 Test #27: SimdUnitTests .................... Passed 0.46 sec test 28 Start 28: CompatibilityHelpersTests @@ -117088,7 +117157,7 @@ 28: [ RUN ] OptionalTest.CanMoveConstructFromEmptyOptionalNonExplicitConverting 28: [ OK ] OptionalTest.CanMoveConstructFromEmptyOptionalNonExplicitConverting (0 ms) 28: [ RUN ] OptionalTest.CanCopyConstructFromNonEmptyOptional -28: [ OK ] OptionalTest.CanCopyConstructFromNonEmptyOptional (1 ms) +28: [ OK ] OptionalTest.CanCopyConstructFromNonEmptyOptional (0 ms) 28: [ RUN ] OptionalTest.CanCopyConstructFromNonEmptyOptionalExplicitConverting 28: [ OK ] OptionalTest.CanCopyConstructFromNonEmptyOptionalExplicitConverting (0 ms) 28: [ RUN ] OptionalTest.CanCopyConstructFromNonEmptyOptionalNonExplicitConverting @@ -117174,7 +117243,7 @@ 28: sizeof( optional ): 32 (16) 28: sizeof( optional ): 2 (1) 28: [ OK ] OptionalTest.ShowSizeDependingOnBaseType (0 ms) -28: [----------] 45 tests from OptionalTest (1 ms total) +28: [----------] 45 tests from OptionalTest (0 ms total) 28: 28: [----------] 7 tests from MakeOptionalTest 28: [ RUN ] MakeOptionalTest.CanMoveAssignBetweenEngagedAndDisengagedOptionals @@ -117202,7 +117271,7 @@ 28: [ OK ] OptionalMemberSwapTest.CanSwapDisengagedWithEngaged (0 ms) 28: [ RUN ] OptionalMemberSwapTest.CanSwapEngagedWithEngaged 28: [ OK ] OptionalMemberSwapTest.CanSwapEngagedWithEngaged (0 ms) -28: [----------] 4 tests from OptionalMemberSwapTest (0 ms total) +28: [----------] 4 tests from OptionalMemberSwapTest (1 ms total) 28: 28: [----------] 4 tests from OptionalImplicitValueTest 28: [ RUN ] OptionalImplicitValueTest.CanObtainValueConst @@ -117256,7 +117325,7 @@ 28: [ OK ] OptionalIntValueTest.CanNonMemberSwapDisengagnedWithEngaged (0 ms) 28: [ RUN ] OptionalIntValueTest.CanNonMemberSwapEngagnedWithDisengaged 28: [ OK ] OptionalIntValueTest.CanNonMemberSwapEngagnedWithDisengaged (0 ms) -28: [----------] 20 tests from OptionalIntValueTest (1 ms total) +28: [----------] 20 tests from OptionalIntValueTest (0 ms total) 28: 28: [----------] 1 test from NotNullConstruction 28: [ RUN ] NotNullConstruction.Works @@ -117337,7 +117406,7 @@ 28: [ RUN ] StringViewTest.CanObtainSubstringWithSubstr 28: [ OK ] StringViewTest.CanObtainSubstringWithSubstr (0 ms) 28: [ RUN ] StringViewTest.ThrowsOnOutOfBoundsSubstr -28: [ OK ] StringViewTest.ThrowsOnOutOfBoundsSubstr (1 ms) +28: [ OK ] StringViewTest.ThrowsOnOutOfBoundsSubstr (0 ms) 28: [ RUN ] StringViewTest.CanLexicallyCompareViewWithCompare 28: [ OK ] StringViewTest.CanLexicallyCompareViewWithCompare (0 ms) 28: [ RUN ] StringViewTest.CanCompareEmptyViewsWIthCompare @@ -117444,7 +117513,7 @@ 28: [ OK ] StringViewTest.HashOfU16StringViewIsEqualToHashOfString (0 ms) 28: [ RUN ] StringViewTest.HashOfU32StringViewIsEqualToHashOfString 28: [ OK ] StringViewTest.HashOfU32StringViewIsEqualToHashOfString (0 ms) -28: [----------] 80 tests from StringViewTest (1 ms total) +28: [----------] 80 tests from StringViewTest (0 ms total) 28: 28: [----------] 5 tests from StringViewExtensionTest 28: [ RUN ] StringViewExtensionTest.CanConstructViewFromString @@ -117460,9 +117529,9 @@ 28: [----------] 5 tests from StringViewExtensionTest (0 ms total) 28: 28: [----------] Global test environment tear-down -28: [==========] 170 tests from 12 test cases ran. (3 ms total) +28: [==========] 170 tests from 12 test cases ran. (1 ms total) 28: [ PASSED ] 170 tests. -28/30 Test #28: CompatibilityHelpersTests ........ Passed 0.19 sec +28/30 Test #28: CompatibilityHelpersTests ........ Passed 0.27 sec test 29 Start 29: FileIOTests @@ -117472,10 +117541,10 @@ 29: [----------] Global test environment set-up. 29: [----------] 2 tests from FileMD5Test 29: [ RUN ] FileMD5Test.CanComputeMD5 -29: [ OK ] FileMD5Test.CanComputeMD5 (2 ms) +29: [ OK ] FileMD5Test.CanComputeMD5 (1 ms) 29: [ RUN ] FileMD5Test.ReturnsErrorIfFileModeIsWrong 29: [ OK ] FileMD5Test.ReturnsErrorIfFileModeIsWrong (0 ms) -29: [----------] 2 tests from FileMD5Test (2 ms total) +29: [----------] 2 tests from FileMD5Test (1 ms total) 29: 29: [----------] 3 tests from MrcSerializer 29: [ RUN ] MrcSerializer.DefaultHeaderValuesAreSet @@ -117488,14 +117557,14 @@ 29: 29: [----------] 4 tests from MrcDensityMap 29: [ RUN ] MrcDensityMap.RoundTripIsIdempotent -29: [ OK ] MrcDensityMap.RoundTripIsIdempotent (1 ms) +29: [ OK ] MrcDensityMap.RoundTripIsIdempotent (0 ms) 29: [ RUN ] MrcDensityMap.ThrowsFileIOErrorWhenFileNotPresent -29: [ OK ] MrcDensityMap.ThrowsFileIOErrorWhenFileNotPresent (1 ms) +29: [ OK ] MrcDensityMap.ThrowsFileIOErrorWhenFileNotPresent (0 ms) 29: [ RUN ] MrcDensityMap.ReadsCoordinateTransformationFromFile 29: [ OK ] MrcDensityMap.ReadsCoordinateTransformationFromFile (0 ms) 29: [ RUN ] MrcDensityMap.ReadsDensityDataFromFile 29: [ OK ] MrcDensityMap.ReadsDensityDataFromFile (1 ms) -29: [----------] 4 tests from MrcDensityMap (4 ms total) +29: [----------] 4 tests from MrcDensityMap (1 ms total) 29: 29: [----------] 8 tests from MrcDensityMapHeaderTest 29: [ RUN ] MrcDensityMapHeaderTest.DataSizeIsZeroForDefaultHeader @@ -117585,17 +117654,17 @@ 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (0 ms) 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 -29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) +29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (0 ms) 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 -29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (2 ms) +29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (1 ms) 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) -29: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (3 ms total) +29: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (1 ms total) 29: 29: [----------] Global test environment tear-down -29: [==========] 33 tests from 8 test cases ran. (11 ms total) +29: [==========] 33 tests from 8 test cases ran. (5 ms total) 29: [ PASSED ] 33 tests. -29/30 Test #29: FileIOTests ...................... Passed 0.20 sec +29/30 Test #29: FileIOTests ...................... Passed 0.33 sec test 30 Start 30: SelectionUnitTests @@ -117612,7 +117681,7 @@ 30: [ RUN ] IndexBlockTest.CreatesUnknownBlock 30: [ OK ] IndexBlockTest.CreatesUnknownBlock (0 ms) 30: [ RUN ] IndexBlockTest.CreatesAtomBlock -30: [ OK ] IndexBlockTest.CreatesAtomBlock (1 ms) +30: [ OK ] IndexBlockTest.CreatesAtomBlock (0 ms) 30: [ RUN ] IndexBlockTest.CreatesResidueBlocksForSimpleTopology 30: [ OK ] IndexBlockTest.CreatesResidueBlocksForSimpleTopology (0 ms) 30: [ RUN ] IndexBlockTest.CreatesResidueBlocksForComplexTopology @@ -117620,7 +117689,7 @@ 30: [ RUN ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology 30: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology (0 ms) 30: [ RUN ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology -30: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology (1 ms) +30: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology (0 ms) 30: [ RUN ] IndexBlockTest.CreatesSingleBlock 30: [ OK ] IndexBlockTest.CreatesSingleBlock (0 ms) 30: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksPositive @@ -117639,7 +117708,7 @@ 30: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive (0 ms) 30: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative 30: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative (0 ms) -30: [----------] 15 tests from IndexBlockTest (2 ms total) +30: [----------] 15 tests from IndexBlockTest (0 ms total) 30: 30: [----------] 11 tests from IndexMapTest 30: [ RUN ] IndexMapTest.InitializesAtomBlock @@ -117647,9 +117716,9 @@ 30: [ RUN ] IndexMapTest.InitializesOrgIdGroupAtom 30: [ OK ] IndexMapTest.InitializesOrgIdGroupAtom (0 ms) 30: [ RUN ] IndexMapTest.InitializesOrgIdGroupSingle -30: [ OK ] IndexMapTest.InitializesOrgIdGroupSingle (1 ms) +30: [ OK ] IndexMapTest.InitializesOrgIdGroupSingle (0 ms) 30: [ RUN ] IndexMapTest.InitializesOrgIdGroupResidue -30: [ OK ] IndexMapTest.InitializesOrgIdGroupResidue (0 ms) +30: [ OK ] IndexMapTest.InitializesOrgIdGroupResidue (1 ms) 30: [ RUN ] IndexMapTest.InitializesOrgIdGroupMolecule 30: [ OK ] IndexMapTest.InitializesOrgIdGroupMolecule (0 ms) 30: [ RUN ] IndexMapTest.InitializesOrgIdGroupAll @@ -117663,8 +117732,8 @@ 30: [ RUN ] IndexMapTest.MapsResidueBlocksWithMask 30: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (0 ms) 30: [ RUN ] IndexMapTest.HandlesMultipleRequests -30: [ OK ] IndexMapTest.HandlesMultipleRequests (1 ms) -30: [----------] 11 tests from IndexMapTest (3 ms total) +30: [ OK ] IndexMapTest.HandlesMultipleRequests (0 ms) +30: [----------] 11 tests from IndexMapTest (1 ms total) 30: 30: [----------] 3 tests from IndexGroupsAndNamesTest 30: [ RUN ] IndexGroupsAndNamesTest.containsNames @@ -117677,44 +117746,44 @@ 30: 30: [----------] 15 tests from NeighborhoodSearchTest 30: [ RUN ] NeighborhoodSearchTest.SimpleSearch -30: [ OK ] NeighborhoodSearchTest.SimpleSearch (20 ms) +30: [ OK ] NeighborhoodSearchTest.SimpleSearch (15 ms) 30: [ RUN ] NeighborhoodSearchTest.SimpleSearchXY -30: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (16 ms) +30: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (15 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchBox 30: [ OK ] NeighborhoodSearchTest.GridSearchBox (2 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchTriclinic -30: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (8 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (4 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearch2DPBC -30: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (3 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (6 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchNoPBC 30: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (1 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchXYBox -30: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (2 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (1 ms) 30: [ RUN ] NeighborhoodSearchTest.SimpleSelfPairsSearch 30: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (0 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSelfPairsSearch -30: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (27 ms) +30: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (40 ms) 30: [ RUN ] NeighborhoodSearchTest.HandlesConcurrentSearches 30: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (0 ms) 30: [ RUN ] NeighborhoodSearchTest.HandlesNoPBC -30: [ OK ] NeighborhoodSearchTest.HandlesNoPBC (1 ms) +30: [ OK ] NeighborhoodSearchTest.HandlesNoPBC (0 ms) 30: [ RUN ] NeighborhoodSearchTest.HandlesNullPBC 30: [ OK ] NeighborhoodSearchTest.HandlesNullPBC (0 ms) 30: [ RUN ] NeighborhoodSearchTest.HandlesSkippingPairs 30: [ OK ] NeighborhoodSearchTest.HandlesSkippingPairs (0 ms) 30: [ RUN ] NeighborhoodSearchTest.SimpleSearchExclusions -30: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (2 ms) +30: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (10 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchExclusions 30: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (0 ms) -30: [----------] 15 tests from NeighborhoodSearchTest (82 ms total) +30: [----------] 15 tests from NeighborhoodSearchTest (94 ms total) 30: 30: [----------] 12 tests from PositionCalculationTest 30: [ RUN ] PositionCalculationTest.ComputesAtomPositions 30: [ OK ] PositionCalculationTest.ComputesAtomPositions (0 ms) 30: [ RUN ] PositionCalculationTest.ComputesResidueCOGPositions -30: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (1 ms) +30: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (0 ms) 30: [ RUN ] PositionCalculationTest.ComputesResidueCOMPositions -30: [ OK ] PositionCalculationTest.ComputesResidueCOMPositions (0 ms) +30: [ OK ] PositionCalculationTest.ComputesResidueCOMPositions (1 ms) 30: [ RUN ] PositionCalculationTest.ComputesGroupCOGPositions 30: [ OK ] PositionCalculationTest.ComputesGroupCOGPositions (0 ms) 30: [ RUN ] PositionCalculationTest.ComputesGroupCOMPositions @@ -117728,18 +117797,18 @@ 30: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms 30: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (0 ms) 30: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms2 -30: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (1 ms) +30: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (0 ms) 30: [ RUN ] PositionCalculationTest.HandlesIdenticalStaticCalculations 30: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (0 ms) 30: [ RUN ] PositionCalculationTest.HandlesOverlappingStaticCalculations 30: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (0 ms) -30: [----------] 12 tests from PositionCalculationTest (2 ms total) +30: [----------] 12 tests from PositionCalculationTest (1 ms total) 30: 30: [----------] 29 tests from SelectionCollectionTest 30: [ RUN ] SelectionCollectionTest.HandlesNoSelections -30: [ OK ] SelectionCollectionTest.HandlesNoSelections (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesNoSelections (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType -30: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesVelocityAndForceRequests 30: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry @@ -117755,11 +117824,11 @@ 30: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue2 30: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue3 -30: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 -30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 @@ -117771,15 +117840,15 @@ 30: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup 30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed -30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (0 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo -30: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (1 ms) +30: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (0 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromMissingAtomTypes -30: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (0 ms) +30: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (4 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromMissingPDBInfo -30: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (0 ms) +30: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (1 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation 30: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation (0 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation2 @@ -117787,18 +117856,18 @@ 30: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation3 30: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation3 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets -30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 -30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (0 ms) -30: [----------] 29 tests from SelectionCollectionTest (6 ms total) +30: [----------] 29 tests from SelectionCollectionTest (11 ms total) 30: 30: [----------] 14 tests from SelectionCollectionInteractiveTest 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesBasicInput -30: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (1 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesContinuation 30: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput @@ -117806,26 +117875,26 @@ 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput 30: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups -30: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (0 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (1 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections -30: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (1 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus 30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus 30: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus -30: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (0 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (1 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline 30: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesEmptySelections -30: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (1 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine -30: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (0 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (8 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput 30: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively -30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (0 ms) -30: [----------] 14 tests from SelectionCollectionInteractiveTest (3 ms total) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (1 ms) +30: [----------] 14 tests from SelectionCollectionInteractiveTest (11 ms total) 30: 30: [----------] 66 tests from SelectionCollectionDataTest 30: [ RUN ] SelectionCollectionDataTest.HandlesAllNone @@ -117833,31 +117902,31 @@ 30: [ RUN ] SelectionCollectionDataTest.HandlesAtomnr 30: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesResnr -30: [ OK ] SelectionCollectionDataTest.HandlesResnr (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesResnr (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesResIndex -30: [ OK ] SelectionCollectionDataTest.HandlesResIndex (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesResIndex (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesMolIndex 30: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesAtomname -30: [ OK ] SelectionCollectionDataTest.HandlesAtomname (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesAtomname (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPdbAtomname 30: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesAtomtype 30: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesChain -30: [ OK ] SelectionCollectionDataTest.HandlesChain (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesChain (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesMass -30: [ OK ] SelectionCollectionDataTest.HandlesMass (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesMass (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesCharge 30: [ OK ] SelectionCollectionDataTest.HandlesCharge (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesAltLoc 30: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesInsertCode -30: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesOccupancy 30: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBeta -30: [ OK ] SelectionCollectionDataTest.HandlesBeta (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesBeta (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesResname 30: [ OK ] SelectionCollectionDataTest.HandlesResname (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesCoordinateKeywords @@ -117873,15 +117942,15 @@ 30: [ RUN ] SelectionCollectionDataTest.HandlesMinDistanceKeyword 30: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesWithinKeyword -30: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword -30: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (10 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPermuteModifier -30: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (2 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPlusModifier -30: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesMergeModifier -30: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (2 ms) 30: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndCharges 30: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (0 ms) 30: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology @@ -117897,29 +117966,29 @@ 30: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections 30: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed -30: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (9 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositions 30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers -30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesWithinConstantPositions 30: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges -30: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingRealRanges 30: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode -30: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesWildcardMatching 30: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesRegexMatching -30: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBasicBoolean -30: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters 30: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions -30: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame 30: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords @@ -117939,28 +118008,28 @@ 30: [ RUN ] SelectionCollectionDataTest.HandlesComplexNumericVariables 30: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariables -30: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (8 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariableInModifier -30: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionInVariable -30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables -30: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis -30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables 30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables -30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesUnusedVariables 30: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups -30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups 30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 -30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (0 ms) -30: [----------] 66 tests from SelectionCollectionDataTest (25 ms total) +30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (1 ms) +30: [----------] 66 tests from SelectionCollectionDataTest (51 ms total) 30: 30: [----------] 17 tests from SelectionOptionTest 30: [ RUN ] SelectionOptionTest.ParsesSimpleSelection @@ -117997,11 +118066,11 @@ 30: [ OK ] SelectionOptionTest.HandlesDelayedOptionalSelection (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster 30: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (0 ms) -30: [----------] 17 tests from SelectionOptionTest (2 ms total) +30: [----------] 17 tests from SelectionOptionTest (3 ms total) 30: 30: [----------] 9 tests from SelectionFileOptionTest 30: [ RUN ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile -30: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (1 ms) +30: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (0 ms) 30: [ RUN ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions 30: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (0 ms) 30: [ RUN ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile @@ -118015,24 +118084,24 @@ 30: [ RUN ] SelectionFileOptionTest.GivesErrorWithNoFile 30: [ OK ] SelectionFileOptionTest.GivesErrorWithNoFile (0 ms) 30: [ RUN ] SelectionFileOptionTest.GivesErrorWithNonExistentFile -30: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (0 ms) +30: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (1 ms) 30: [ RUN ] SelectionFileOptionTest.GivesErrorWithMultipleFiles -30: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (1 ms) -30: [----------] 9 tests from SelectionFileOptionTest (2 ms total) +30: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (0 ms) +30: [----------] 9 tests from SelectionFileOptionTest (1 ms total) 30: 30: [----------] Global test environment tear-down -30: [==========] 192 tests from 11 test cases ran. (128 ms total) +30: [==========] 192 tests from 11 test cases ran. (175 ms total) 30: [ PASSED ] 192 tests. -30/30 Test #30: SelectionUnitTests ............... Passed 0.32 sec +30/30 Test #30: SelectionUnitTests ............... Passed 0.62 sec 100% tests passed, 0 tests failed out of 30 Label Time Summary: -GTest = 6.44 sec*proc (30 tests) -MpiTest = 0.63 sec*proc (3 tests) -UnitTest = 6.44 sec*proc (30 tests) +GTest = 13.64 sec*proc (30 tests) +MpiTest = 1.81 sec*proc (3 tests) +UnitTest = 13.64 sec*proc (30 tests) -Total Test time (real) = 6.47 sec +Total Test time (real) = 13.67 sec touch build-openmpi dh_testdir # Build speedy, stripped-down version just for documentation generation. @@ -118281,185 +118350,185 @@ /usr/bin/make -f CMakeFiles/Makefile2 src/programs/CMakeFiles/gmx.dir/all make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= +Scanning dependencies of target mdrun_objlib make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +Scanning dependencies of target scanner make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_zlib.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp Scanning dependencies of target release-version-info -Scanning dependencies of target tng_io_zlib make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -Scanning dependencies of target scanner -Scanning dependencies of target vmddlopen +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/nonbonded_bench.cpp +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +Scanning dependencies of target tng_io_obj make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/build -Scanning dependencies of target mdrun_objlib -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -Scanning dependencies of target linearalgebra -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -Scanning dependencies of target lmfit_objlib -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -Scanning dependencies of target view_objlib +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +Scanning dependencies of target tng_io_zlib +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp -Scanning dependencies of target tng_io_obj +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/build +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/adler32.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/adler32.c -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/nonbonded_bench.cpp -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build +Scanning dependencies of target lmfit_objlib make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/compress.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/compress.c make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/vmd_molfile/vmddlopen.cpp -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c +[ 0%] Built target release-version-info +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/view.cpp +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= Scanning dependencies of target thread_mpi +Scanning dependencies of target linearalgebra +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/crc32.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/crc32.c make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -Scanning dependencies of target modularsimulator make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/checkpointhelper.cpp -[ 0%] Built target release-version-info -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/compress.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/compress.c -[ 0%] Built target vmddlopen -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/crc32.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/crc32.c +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src 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-I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/dict.c cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security 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/build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffmem.c cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inflate.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/inflate.c cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -std=c++14 -o 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/build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/lz77.c -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/pthreads.cpp -[ 0%] Built target view_objlib -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/merge_sort.c -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inftrees.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/inftrees.c cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/mtf.c -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 0%] Built target lmfit_objlib -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o 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/build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/uncompr.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/uncompr.c -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/system_error.cpp cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/tng_compress.c -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/zutil.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/zutil.c cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/vals16.c -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/nrjac.cpp -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/warnmalloc.c +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/system_error.cpp cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/widemuldiv.c cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc2.c -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc3.c +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inftrees.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/inftrees.c +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/trees.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/trees.c +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/uncompr.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/uncompr.c +[ 0%] Built target lmfit_objlib +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/zutil.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/zutil.c +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/tng_io.c cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/alltoall.cpp +Scanning dependencies of target modularsimulator make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 0%] Built target tng_io_zlib -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc3.c -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src 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3%] Built target thread_mpi cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/statepropagatordata.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +[ 3%] Built target scanner cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/topologyholder.cpp cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/trajectoryelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/vrescalethermostat.cpp @@ -119292,45 +119361,49 @@ /usr/bin/make -f CMakeFiles/Makefile2 docs/CMakeFiles/man.dir/all make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/depend +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_zlib.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +[ 0%] Built target mdrun_objlib make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +[ 0%] Built target scanner make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_zlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +[ 0%] Built target release-version-info make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/build +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_zlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' @@ -119338,82 +119411,78 @@ make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 0%] Built target mdrun_objlib -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 2%] Built target tng_io_obj -[ 2%] Built target scanner -[ 2%] Built target release-version-info -[ 2%] Built target tng_io_zlib +[ 0%] Built target tng_io_zlib /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +[ 2%] Built target tng_io_obj [ 2%] Built target lmfit_objlib +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend -/usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/depend -/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs /build/reproducible-path/gromacs-2020.6/build/documentation/docs/CMakeFiles/sphinx-image-conversion.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs /build/reproducible-path/gromacs-2020.6/build/documentation/docs/CMakeFiles/sphinx-input-rst.dir/DependInfo.cmake --color= +make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -Scanning dependencies of target sphinx-image-conversion -Scanning dependencies of target sphinx-input-rst +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build +[ 2%] Built target linearalgebra +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend +[ 5%] Built target thread_mpi make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend +[ 7%] Built target modularsimulator +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs /build/reproducible-path/gromacs-2020.6/build/documentation/docs/CMakeFiles/sphinx-input-rst.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs /build/reproducible-path/gromacs-2020.6/build/documentation/docs/CMakeFiles/sphinx-image-conversion.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/build -/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/build +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build +Scanning dependencies of target sphinx-input-rst +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E touch /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-image-conversion-timestamp.txt +Scanning dependencies of target sphinx-image-conversion +/usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/build +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/plots/xvgr.png /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/plots/xvgr.png +/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/build cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -D VERSION_VARIABLES=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/docs/conf-vars.py.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/conf-vars.py -D SPHINX_EXTENSION_PATH=/build/reproducible-path/gromacs-2020.6/docs -D RELENG_PATH= -D IMAGE_CONVERT_STRING=impossible -D EXPECTED_DOXYGEN_VERSION=1.8.5 -D EXPECTED_SPHINX_VERSION=1.6.1 -D CMAKE_MINIMUM_REQUIRED_VERSION=3.9.6 -D REQUIRED_CUDA_VERSION=9.0 -D REQUIRED_OPENCL_MIN_VERSION=1.2 -D REQUIRED_CUDA_COMPUTE_CAPABILITY=3.0 -D REGRESSIONTEST_VERSION=2020.6-Debian-2020.6-2 -D SOURCE_MD5SUM=unknown -D REGRESSIONTEST_MD5SUM_STRING=unknown -D GMX_TNG_MINIMUM_REQUIRED_VERSION=1.7.10 -D GMX_LMFIT_REQUIRED_VERSION=7.0 -D "GMX_MANUAL_DOI_STRING=This is not a release build of GROMACS, so please reference one of the GROMACS papers and the base release of the manual." -D "GMX_SOURCE_DOI_STRING=This is not a release build of GROMACS. Please reference one of the GROMACS papers, as well as the base release that this version is built from. Also, please state what modifcations have been performed or where the version was sourced from." -D GMXAPI_PYTHON_STAGING_DIR= -P /build/reproducible-path/gromacs-2020.6/cmake/gmxConfigureVersionInfo.cmake +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E touch /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-image-conversion-timestamp.txt cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/index.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/index.rst -[ 4%] Built target modularsimulator -[ 4%] Built target linearalgebra -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +[ 7%] Built target vmddlopen cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/download.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/download.rst -[ 7%] Built target thread_mpi -cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/conf.py /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/conf.py +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E touch /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/conf-vars.py [ 7%] Built target view_objlib -[ 7%] Built target vmddlopen +cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/conf.py /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/conf.py /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend [ 7%] Built target sphinx-image-conversion -cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E touch /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/conf-vars.py cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/links.dat /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/links.dat cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/build-system.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/build-system.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/change-management.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/change-management.rst @@ -119437,6 +119506,8 @@ cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/reportstyle.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/reportstyle.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/style.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/style.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/testutils.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/testutils.rst +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/tools.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/tools.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/code-formatting.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/code-formatting.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/fragments/doxygen-links.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/fragments/doxygen-links.rst @@ -119444,6 +119515,8 @@ cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/how-to/beginners.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/how-to/beginners.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/how-to/topology.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/how-to/topology.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/how-to/special.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/how-to/special.rst +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/how-to/visualize.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/how-to/visualize.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/install-guide/index.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/install-guide/index.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/index.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/index.rst @@ -119456,8 +119529,6 @@ cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2020/major/highlights.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2020/major/highlights.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2020/major/features.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2020/major/features.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2020/major/performance.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2020/major/performance.rst -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2020/major/tools.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2020/major/tools.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2020/major/bugs-fixed.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2020/major/bugs-fixed.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2020/major/removed-functionality.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2020/major/removed-functionality.rst @@ -119465,17 +119536,28 @@ cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2020/major/portability.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2020/major/portability.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2020/major/miscellaneous.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2020/major/miscellaneous.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2019/2019.6.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2019/2019.6.rst -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2019/2019.5.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2019/2019.5.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2019/2019.4.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2019/2019.4.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2019/2019.3.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2019/2019.3.rst +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2019/2019.2.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2019/2019.2.rst +[ 83%] Built target libgromacs +/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2019/2019.1.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2019/2019.1.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2019/major/highlights.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2019/major/highlights.rst +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2019/major/features.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2019/major/features.rst +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2019/major/performance.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2019/major/performance.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2019/major/tools.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2019/major/tools.rst +[ 85%] Built target gmx cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2019/major/bugs-fixed.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2019/major/bugs-fixed.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2019/major/removed-functionality.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2019/major/removed-functionality.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2019/major/deprecated-functionality.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2019/major/deprecated-functionality.rst @@ -119510,32 +119592,19 @@ cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2016/major/miscellaneous.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2016/major/miscellaneous.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/older/index.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/older/index.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/user-guide/cmdline.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/cmdline.rst -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/user-guide/deprecation-policy.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/deprecation-policy.rst -[ 83%] Built target libgromacs cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/user-guide/environment-variables.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/environment-variables.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/user-guide/faq.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/faq.rst -/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/user-guide/floating-point.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/floating-point.rst -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/user-guide/flow.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/flow.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/user-guide/force-fields.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/force-fields.rst -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/user-guide/getting-started.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/getting-started.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/user-guide/index.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/index.rst -/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/user-guide/managing-simulations.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/managing-simulations.rst -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/user-guide/mdp-options.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/mdp-options.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/user-guide/mdrun-features.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/mdrun-features.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/user-guide/mdrun-performance.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/mdrun-performance.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/user-guide/run-time-errors.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/run-time-errors.rst -[ 85%] Built target gmx cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/user-guide/security.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/security.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/user-guide/system-preparation.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/system-preparation.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/user-guide/terminology.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/terminology.rst @@ -119600,7 +119669,7 @@ cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/sphinx-build -q -b man -w sphinx-man.log -d /build/reproducible-path/gromacs-2020.6/build/documentation/docs/_doctrees -t do_man /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input /build/reproducible-path/gromacs-2020.6/build/documentation/docs/man WARNING: html_static_path entry '_static' does not exist WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/algorithms' /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/functions' /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/special' @@ -119625,163 +119694,163 @@ make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/DependInfo.cmake --color= /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend -/usr/bin/make -f docs/manual/CMakeFiles/manual.dir/build.make docs/manual/CMakeFiles/manual.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= +/usr/bin/make -f docs/manual/CMakeFiles/manual.dir/build.make docs/manual/CMakeFiles/manual.dir/depend +Scanning dependencies of target doxygen-source-timestamp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/manual /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/manual /build/reproducible-path/gromacs-2020.6/build/documentation/docs/manual/CMakeFiles/manual.dir/DependInfo.cmake --color= /usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/depend -Scanning dependencies of target doxygen-source-timestamp +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/manual /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/manual /build/reproducible-path/gromacs-2020.6/build/documentation/docs/manual/CMakeFiles/manual.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs /build/reproducible-path/gromacs-2020.6/build/documentation/docs/CMakeFiles/sphinx-image-conversion.dir/DependInfo.cmake --color= /usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/build.make docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/build -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -E touch /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/doxygen-source-timestamp.txt -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_zlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +/usr/bin/make -f docs/manual/CMakeFiles/manual.dir/build.make docs/manual/CMakeFiles/manual.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/manual && /usr/bin/cmake -E echo "Cannot build PDF manual, because a working form of ImageMagick convert is not available" make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build /usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'docs/CMakeFiles/sphinx-image-conversion.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +Cannot build PDF manual, because a working form of ImageMagick convert is not available make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +[ 0%] Built target doxygen-source-timestamp +[ 0%] Built target release-version-info +[ 0%] Built target manual +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +[ 0%] Built target sphinx-image-conversion make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/depend make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f docs/manual/CMakeFiles/manual.dir/build.make docs/manual/CMakeFiles/manual.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Nothing to be done for 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/build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_zlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 0%] Built target sphinx-image-conversion make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/build -[ 0%] Built target scanner +[ 0%] Built target mdrun_objlib +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/build +[ 0%] Built target scanner make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_zlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +[ 2%] Built target tng_io_obj +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +[ 2%] Built target tng_io_zlib +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -Cannot build PDF manual, because a working form of ImageMagick convert is not available +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 0%] Built target release-version-info -[ 2%] Built target tng_io_obj -[ 2%] Built target manual -[ 2%] Built target mdrun_objlib -[ 2%] Built target tng_io_zlib -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend [ 2%] Built target lmfit_objlib [ 5%] Built target thread_mpi +[ 5%] Built target linearalgebra /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend +[ 7%] Built target modularsimulator /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-version.dir/build.make docs/doxygen/CMakeFiles/doxygen-version.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/doxygen-version.dir/DependInfo.cmake --color= -/usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/depend -[ 5%] Built target linearalgebra -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs /build/reproducible-path/gromacs-2020.6/build/documentation/docs/CMakeFiles/sphinx-input-rst.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build -Scanning dependencies of target doxygen-version make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-version.dir/build.make docs/doxygen/CMakeFiles/doxygen-version.dir/build +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. +make[4]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +[ 7%] Built target vmddlopen +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-version.dir/build.make docs/doxygen/CMakeFiles/doxygen-version.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -D VERSION_VARIABLES=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/docs/doxygen/Doxyfile-version.cmakein -D VERSION_OUT=Doxyfile-version -P /build/reproducible-path/gromacs-2020.6/cmake/gmxConfigureVersionInfo.cmake +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/doxygen-version.dir/DependInfo.cmake --color= +[ 7%] Built target view_objlib +/usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs /build/reproducible-path/gromacs-2020.6/build/documentation/docs/CMakeFiles/sphinx-input-rst.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +Scanning dependencies of target doxygen-version make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-version.dir/build.make docs/doxygen/CMakeFiles/doxygen-version.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 5%] Built target vmddlopen -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -D VERSION_VARIABLES=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/docs/doxygen/Doxyfile-version.cmakein -D VERSION_OUT=Doxyfile-version -P /build/reproducible-path/gromacs-2020.6/cmake/gmxConfigureVersionInfo.cmake /usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -E touch Doxyfile-version make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'docs/CMakeFiles/sphinx-input-rst.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 7%] Built target modularsimulator -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 8%] Built target view_objlib +cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -E touch Doxyfile-version [ 19%] Built target sphinx-input-rst /usr/bin/make -f docs/CMakeFiles/sphinx-input.dir/build.make docs/CMakeFiles/sphinx-input.dir/depend +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs /build/reproducible-path/gromacs-2020.6/build/documentation/docs/CMakeFiles/sphinx-input.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f docs/CMakeFiles/sphinx-input.dir/build.make docs/CMakeFiles/sphinx-input.dir/build [ 19%] Built target doxygen-version +/usr/bin/make -f docs/CMakeFiles/sphinx-input.dir/build.make docs/CMakeFiles/sphinx-input.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'docs/CMakeFiles/sphinx-input.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-xml.dir/build.make docs/doxygen/CMakeFiles/doxygen-xml.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/doxygen-xml.dir/DependInfo.cmake --color= [ 19%] Built target sphinx-input +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/doxygen-xml.dir/DependInfo.cmake --color= Scanning dependencies of target doxygen-xml make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-xml.dir/build.make docs/doxygen/CMakeFiles/doxygen-xml.dir/build @@ -119828,11 +119897,7 @@ cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E make_directory /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/_static cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/sphinx-build -q -b html -w sphinx-html.log -d /build/reproducible-path/gromacs-2020.6/build/documentation/docs/_doctrees /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input /build/reproducible-path/gromacs-2020.6/build/documentation/docs/html WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) -/build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/algorithms' -/build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/functions' -/build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/special' -/build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/analysis' +intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) The following warnings were produced by Doxygen: /build/reproducible-path/gromacs-2020.6/src/gromacs/math/vec.h:642: warning: unbalanced grouping commands /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/settle.cpp:861: warning: Reached end of file while still inside a (nested) comment. Nesting level 1 (probable line reference: 399) @@ -119976,51 +120041,55 @@ make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' [ 97%] Built target doxygen-xml /usr/bin/make -f docs/doxygen/CMakeFiles/dep-graphs-dot.dir/build.make docs/doxygen/CMakeFiles/dep-graphs-dot.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-user.dir/build.make docs/doxygen/CMakeFiles/doxygen-user.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/dep-graphs-dot.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/doxygen-user.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/dep-graphs-dot.dir/DependInfo.cmake --color= -Scanning dependencies of target doxygen-user Scanning dependencies of target dep-graphs-dot +Scanning dependencies of target doxygen-user make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f docs/doxygen/CMakeFiles/dep-graphs-dot.dir/build.make docs/doxygen/CMakeFiles/dep-graphs-dot.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-user.dir/build.make docs/doxygen/CMakeFiles/doxygen-user.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/python3 /build/reproducible-path/gromacs-2020.6/docs/doxygen/graphbuilder.py -S /build/reproducible-path/gromacs-2020.6 -B /build/reproducible-path/gromacs-2020.6/build/documentation --ignore-cycles /build/reproducible-path/gromacs-2020.6/docs/doxygen/cycle-suppressions.txt -o /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/depgraphs +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-user.dir/build.make docs/doxygen/CMakeFiles/doxygen-user.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -E make_directory /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/depgraphs cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -DDOCTYPE=user -P RunDoxygen.cmake NOTE: You are using Doxygen version 1.9.1. The documentation is designed for 1.8.5. Other versions may or may not work, but very likely produce extra warnings. Running Doxygen... +Scanning source tree... warning: Tag 'MSCGEN_PATH' at line 36 of file 'Doxyfile-common' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" -Scanning source tree... Reading source files... +/build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/algorithms' +/build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/functions' +/build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/special' +/build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/analysis' Reading Doxygen XML files... Writing graphs... cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -E touch /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/dep-graphs-dot-timestamp.txt make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' [ 98%] Built target dep-graphs-dot /usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-lib.dir/build.make docs/doxygen/CMakeFiles/doxygen-lib.dir/depend -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-full.dir/build.make docs/doxygen/CMakeFiles/doxygen-full.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/doxygen-lib.dir/DependInfo.cmake --color= +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-full.dir/build.make docs/doxygen/CMakeFiles/doxygen-full.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/doxygen-full.dir/DependInfo.cmake --color= -Scanning dependencies of target doxygen-full +Scanning dependencies of target doxygen-lib make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-full.dir/build.make docs/doxygen/CMakeFiles/doxygen-full.dir/build +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-lib.dir/build.make docs/doxygen/CMakeFiles/doxygen-lib.dir/build +Scanning dependencies of target doxygen-full make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -E make_directory /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/depgraphs -Scanning dependencies of target doxygen-lib make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-lib.dir/build.make docs/doxygen/CMakeFiles/doxygen-lib.dir/build +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-full.dir/build.make docs/doxygen/CMakeFiles/doxygen-full.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -E make_directory /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/depgraphs -cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -DDOCTYPE=full -P RunDoxygen.cmake cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -DDOCTYPE=lib -P RunDoxygen.cmake +cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -DDOCTYPE=full -P RunDoxygen.cmake NOTE: You are using Doxygen version 1.9.1. The documentation is designed for 1.8.5. Other versions may or may not work, but very likely produce extra warnings. Running Doxygen... NOTE: You are using Doxygen version 1.9.1. The documentation is designed for 1.8.5. Other versions may or may not work, but very likely produce extra warnings. @@ -120063,10 +120132,10 @@ /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/terminology.rst:72: WARNING: undefined label: pbc /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/terminology.rst:135: WARNING: undefined label: temp-coupling /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/terminology.rst:370: WARNING: undefined label: md -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 98%] Built target webpage-sphinx libpath/shortest.c:324: triangulation failed libpath/shortest.c:324: triangulation failed +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +[ 98%] Built target webpage-sphinx The following warnings were produced by Doxygen: /build/reproducible-path/gromacs-2020.6/src/gromacs/math/vec.h:642: warning: unbalanced grouping commands /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/settle.cpp:861: warning: Reached end of file while still inside a (nested) comment. Nesting level 1 (probable line reference: 399) @@ -121081,96 +121150,96 @@ /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 0%] Built target scanner make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +[ 0%] Built target lmfit_objlib make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 0%] Built target release-version-info make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +[ 3%] Built target thread_mpi make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 5%] Built target tng_io_obj +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build -[ 0%] Built target lmfit_objlib -[ 0%] Built target scanner -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -[ 1%] Built target linearalgebra -[ 1%] Built target vmddlopen make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend +[ 6%] Built target linearalgebra +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +[ 8%] Built target modularsimulator +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. +make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 3%] Built target tng_io_obj -[ 5%] Built target mdrun_objlib -[ 6%] Built target modularsimulator -[ 10%] Built target thread_mpi -[ 11%] Built target view_objlib -[ 11%] Built target release-version-info +[ 10%] Built target mdrun_objlib +[ 10%] Built target vmddlopen /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +[ 11%] Built target view_objlib make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' @@ -121180,31 +121249,31 @@ make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' [ 98%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend -/usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/share/template /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/share/template /build/reproducible-path/gromacs-2020.6/build/basic/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= +/usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/depend +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/CMakeFiles/gmxapi.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build -/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Nothing to be done for 'share/template/CMakeFiles/template.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 98%] Built target template +/usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Nothing to be done for 'src/api/cpp/CMakeFiles/gmxapi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' [ 98%] Built target gmx -[ 98%] Built target template [100%] Built target gmxapi make[2]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/basic/CMakeFiles 0 @@ -121909,93 +121978,93 @@ /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 1%] Built target scanner +[ 1%] Built target release-version-info +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +[ 1%] Built target lmfit_objlib +[ 5%] Built target thread_mpi +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +[ 6%] Built target tng_io_obj +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 6%] Built target linearalgebra +[ 8%] Built target modularsimulator +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +[ 8%] Built target vmddlopen make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 1%] Built target scanner -[ 1%] Built target linearalgebra -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 1%] Built target lmfit_objlib /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 3%] Built target modularsimulator -[ 3%] Built target vmddlopen -[ 6%] Built target thread_mpi -[ 8%] Built target tng_io_obj -[ 8%] Built target release-version-info [ 8%] Built target mdrun_objlib /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend [ 10%] Built target view_objlib @@ -122008,18 +122077,18 @@ make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' [ 98%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend -/usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= +/usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/CMakeFiles/gmxapi.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Nothing to be done for 'src/api/cpp/CMakeFiles/gmxapi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' @@ -122654,78 +122723,78 @@ /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 0%] Built target scanner +[ 0%] Built target release-version-info +[ 0%] Built target lmfit_objlib +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +[ 1%] Built target thread_mpi make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build -[ 0%] Built target lmfit_objlib +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 0%] Built target scanner +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 1%] Built target thread_mpi -[ 2%] Built target mdrun_objlib -[ 2%] Built target linearalgebra -[ 5%] Built target tng_io_obj -[ 8%] Built target modularsimulator -[ 8%] Built target release-version-info +[ 4%] Built target tng_io_obj +[ 4%] Built target linearalgebra +[ 7%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +[ 8%] Built target mdrun_objlib make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' @@ -122773,78 +122842,78 @@ /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/mpich-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/mpich-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +[ 0%] Built target scanner +[ 0%] Built target release-version-info +[ 0%] Built target lmfit_objlib +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/mpich-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/mpich-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +[ 1%] Built target thread_mpi +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -[ 0%] Built target linearalgebra +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -[ 0%] Built target scanner -[ 1%] Built target thread_mpi +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -[ 1%] Built target lmfit_objlib -[ 2%] Built target mdrun_objlib +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -[ 5%] Built target tng_io_obj -[ 8%] Built target modularsimulator -[ 8%] Built target release-version-info +[ 4%] Built target tng_io_obj +[ 4%] Built target linearalgebra +[ 7%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +[ 8%] Built target mdrun_objlib make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' @@ -122904,76 +122973,76 @@ /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 0%] Built target scanner +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 0%] Built target lmfit_objlib +[ 1%] Built target thread_mpi +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +[ 4%] Built target tng_io_obj make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +[ 4%] Built target release-version-info make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +[ 4%] Built target linearalgebra make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 0%] Built target scanner -[ 2%] Built target lmfit_objlib -[ 2%] Built target tng_io_obj -[ 4%] Built target linearalgebra -[ 4%] Built target thread_mpi -[ 5%] Built target mdrun_objlib make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 5%] Built target release-version-info +[ 5%] Built target mdrun_objlib [ 8%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' @@ -123024,77 +123093,77 @@ make[2]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +[ 0%] Built target scanner +[ 0%] Built target release-version-info +[ 0%] Built target lmfit_objlib +[ 1%] Built target thread_mpi +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +[ 4%] Built target tng_io_obj make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -[ 0%] Built target scanner +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -[ 0%] Built target lmfit_objlib -[ 0%] Built target linearalgebra -[ 4%] Built target thread_mpi -[ 4%] Built target tng_io_obj make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -[ 5%] Built target mdrun_objlib -[ 8%] Built target modularsimulator -[ 8%] Built target release-version-info +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +[ 4%] Built target linearalgebra +[ 7%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +[ 8%] Built target mdrun_objlib make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' @@ -130579,13 +130648,13 @@ dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'gromacs' in '../gromacs_2020.6-2_arm64.deb'. -dpkg-deb: building package 'gromacs-dbgsym' in '../gromacs-dbgsym_2020.6-2_arm64.deb'. dpkg-deb: building package 'libgromacs5' in '../libgromacs5_2020.6-2_arm64.deb'. +dpkg-deb: building package 'gromacs-mpich-dbgsym' in '../gromacs-mpich-dbgsym_2020.6-2_arm64.deb'. dpkg-deb: building package 'libgromacs5-dbgsym' in '../libgromacs5-dbgsym_2020.6-2_arm64.deb'. -dpkg-deb: building package 'gromacs-openmpi' in '../gromacs-openmpi_2020.6-2_arm64.deb'. -dpkg-deb: building package 'libgromacs-dev' in '../libgromacs-dev_2020.6-2_arm64.deb'. dpkg-deb: building package 'gromacs-mpich' in '../gromacs-mpich_2020.6-2_arm64.deb'. -dpkg-deb: building package 'gromacs-mpich-dbgsym' in '../gromacs-mpich-dbgsym_2020.6-2_arm64.deb'. +dpkg-deb: building package 'libgromacs-dev' in '../libgromacs-dev_2020.6-2_arm64.deb'. +dpkg-deb: building package 'gromacs-openmpi' in '../gromacs-openmpi_2020.6-2_arm64.deb'. +dpkg-deb: building package 'gromacs-dbgsym' in '../gromacs-dbgsym_2020.6-2_arm64.deb'. dpkg-deb: building package 'gromacs-openmpi-dbgsym' in '../gromacs-openmpi-dbgsym_2020.6-2_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../gromacs_2020.6-2_arm64.changes @@ -130594,12 +130663,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/934917/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/934917/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/463863 and its subdirectories -I: Current time: Fri Feb 2 12:16:27 -12 2024 -I: pbuilder-time-stamp: 1706919387 +I: removing directory /srv/workspace/pbuilder/934917 and its subdirectories +I: Current time: Fri Mar 7 21:58:54 +14 2025 +I: pbuilder-time-stamp: 1741334334