Diff of the two buildlogs: -- --- b1/build.log 2021-09-07 01:12:33.397803676 +0000 +++ b2/build.log 2021-09-07 01:13:38.063484203 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Oct 9 19:34:31 -12 2022 -I: pbuilder-time-stamp: 1665387271 +I: Current time: Tue Sep 7 15:12:37 +14 2021 +I: pbuilder-time-stamp: 1630977157 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./lucy_1.20-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.IiBMaBcG/trustedkeys.kbx': General error -gpgv: Signature made Sun Apr 19 04:58:04 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.bbRR0ZeH/trustedkeys.kbx': General error +gpgv: Signature made Mon Apr 20 06:58:04 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -30,135 +30,169 @@ dpkg-source: info: applying spellings.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2037/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3170/tmp/hooks/D01_modify_environment starting +debug: Running on codethink12-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3170/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3170/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' - DISTRIBUTION='' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2037' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3170 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.NEBqR1mw8a/pbuilderrc_Ykzu --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.NEBqR1mw8a/b1 --logfile b1/build.log lucy_1.20-3.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.NEBqR1mw8a/pbuilderrc_Y3hJ --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.NEBqR1mw8a/b2 --logfile b2/build.log lucy_1.20-3.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink15-arm64 4.15.0-154-generic #161-Ubuntu SMP Fri Jul 30 13:01:15 UTC 2021 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-154-generic #161-Ubuntu SMP Fri Jul 30 13:01:15 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 - -rwxr-xr-x 1 root root 1282512 Aug 4 2021 bash - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat - -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown - -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp - -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash - -rwxr-xr-x 1 root root 101384 Sep 22 2020 date - -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd - -rwxr-xr-x 1 root root 89824 Sep 22 2020 df - -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir - -rwxr-xr-x 1 root root 76152 Jul 28 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 31512 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 64856 Jul 28 2021 findmnt - -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln - -rwxr-xr-x 1 root root 52720 Feb 7 2020 login - -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls - -rwxr-xr-x 1 root root 161960 Jul 28 2021 lsblk - -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 51368 Jul 28 2021 more - -rwsr-xr-x 1 root root 51360 Jul 28 2021 mount - -rwxr-xr-x 1 root root 14496 Jul 28 2021 mountpoint - -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash - -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm - -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Sep 23 03:47 sh -> dash - -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty - -rwsr-xr-x 1 root root 67776 Jul 28 2021 su - -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync - -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar - -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch - -rwxr-xr-x 1 root root 31512 Sep 22 2020 true - -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 30880 Jul 28 2021 umount - -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 59584 Jul 28 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/2037/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1282512 Aug 5 10:25 bash + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat + -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown + -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp + -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash + -rwxr-xr-x 1 root root 101384 Sep 23 2020 date + -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd + -rwxr-xr-x 1 root root 89824 Sep 23 2020 df + -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir + -rwxr-xr-x 1 root root 76152 Jul 29 09:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 31512 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 64856 Jul 29 09:09 findmnt + -rwsr-xr-x 1 root root 34824 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 93744 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln + -rwxr-xr-x 1 root root 52720 Feb 8 2020 login + -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls + -rwxr-xr-x 1 root root 161960 Jul 29 09:09 lsblk + -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 51368 Jul 29 09:09 more + -rwsr-xr-x 1 root root 51360 Jul 29 09:09 mount + -rwxr-xr-x 1 root root 14496 Jul 29 09:09 mountpoint + -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash + -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm + -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Sep 7 15:12 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 21 23:24 sh.distrib -> dash + -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty + -rwsr-xr-x 1 root root 67776 Jul 29 09:09 su + -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync + -rwxr-xr-x 1 root root 535768 Feb 17 2021 tar + -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch + -rwxr-xr-x 1 root root 31512 Sep 23 2020 true + -rwxr-xr-x 1 root root 14264 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 30880 Jul 29 09:09 umount + -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 59584 Jul 29 09:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/3170/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -225,7 +259,7 @@ Get: 29 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] -Fetched 17.9 MB in 4s (4703 kB/s) +Fetched 17.9 MB in 2s (10.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) @@ -365,7 +399,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/lucy-1.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lucy_1.20-3_source.changes +hostname: Temporary failure in name resolution +I: Running cd /build/lucy-1.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lucy_1.20-3_source.changes dpkg-buildpackage: info: source package lucy dpkg-buildpackage: info: source version 1.20-3 dpkg-buildpackage: info: source distribution unstable @@ -405,6 +440,7 @@ cc -g -O2 -fdebug-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o abi.o abi.c cc -g -O2 -fdebug-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vector.o vector.c cc -g -O2 -fdebug-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o splice.o splice.c +cc -g -O2 -fdebug-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o poly.o poly.c qual_trim.c:10:1: warning: "/*" within comment [-Wcomment] 10 | /* qual_trim.c - Quality trimming algorithm which determines a "clean" | @@ -522,113 +558,6 @@ qual_trim.c:48:1: warning: "/*" within comment [-Wcomment] 48 | /**************************************************************************/ | -cc -g -O2 -fdebug-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o poly.o poly.c -abi.c:24:8: warning: type defaults to 'int' in declaration of 'condition' [-Wimplicit-int] - 24 | static condition[]={ - | ^~~~~~~~~ -abi.c: In function 'abi_code': -abi.c:70:15: warning: implicit declaration of function 'random' [-Wimplicit-function-declaration] - 70 | case 5: tmp=random()%2 ? 2 : 0; break; - | ^~~~~~ -abi.c:82:5: warning: implicit declaration of function 'giveup' [-Wimplicit-function-declaration] - 82 | giveup("how can other cases happen in tag_code?"); - | ^~~~~~ -abi.c: In function 'abi_align': -abi.c:195:18: warning: array subscript has type 'char' [-Wchar-subscripts] - 195 | if (badness[a[i]][b[j]]) { - | ~^~~ -abi.c:195:24: warning: array subscript has type 'char' [-Wchar-subscripts] - 195 | if (badness[a[i]][b[j]]) { - | ~^~~ -abi.c:221:18: warning: array subscript has type 'char' [-Wchar-subscripts] - 221 | if (badness[a[i]][b[j]]) { - | ~^~~ -abi.c:221:24: warning: array subscript has type 'char' [-Wchar-subscripts] - 221 | if (badness[a[i]][b[j]]) { - | ~^~~ -abi.c:226:39: warning: array subscript has type 'char' [-Wchar-subscripts] - 226 | l=0 && r>=0 && badness[a[l]][b[r]]==0 - | ~^~~ -abi.c:294:38: warning: array subscript has type 'char' [-Wchar-subscripts] - 294 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 - | ~^~~ -abi.c:301:23: warning: array subscript has type 'char' [-Wchar-subscripts] - 301 | if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 - | ~^~~ -abi.c:313:38: warning: array subscript has type 'char' [-Wchar-subscripts] - 313 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 - | ~^~~ -abi.c:320:23: warning: array subscript has type 'char' [-Wchar-subscripts] - 320 | if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 - | ~^~~ -abi.c:334:38: warning: array subscript has type 'char' [-Wchar-subscripts] - 334 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 - | ~^~~ -abi.c:341:23: warning: array subscript has type 'char' [-Wchar-subscripts] - 341 | if ((count+=badness[a[l]][b[r]])=span && j>=width-max_i || j>height/2) | ~~~~~~~~^~~~~~~~~~~~~~~~~ +abi.c:24:8: warning: type defaults to 'int' in declaration of 'condition' [-Wimplicit-int] + 24 | static condition[]={ + | ^~~~~~~~~ abi.c: In function 'abi_code': -abi.c:84:10: warning: 'tmp' may be used uninitialized in this function [-Wmaybe-uninitialized] - 84 | return tmp; - | ^~~ +abi.c:70:15: warning: implicit declaration of function 'random' [-Wimplicit-function-declaration] + 70 | case 5: tmp=random()%2 ? 2 : 0; break; + | ^~~~~~ +abi.c:82:5: warning: implicit declaration of function 'giveup' [-Wimplicit-function-declaration] + 82 | giveup("how can other cases happen in tag_code?"); + | ^~~~~~ +abi.c: In function 'abi_align': +abi.c:195:18: warning: array subscript has type 'char' [-Wchar-subscripts] + 195 | if (badness[a[i]][b[j]]) { + | ~^~~ +abi.c:195:24: warning: array subscript has type 'char' [-Wchar-subscripts] + 195 | if (badness[a[i]][b[j]]) { + | ~^~~ +abi.c:221:18: warning: array subscript has type 'char' [-Wchar-subscripts] + 221 | if (badness[a[i]][b[j]]) { + | ~^~~ +abi.c:221:24: warning: array subscript has type 'char' [-Wchar-subscripts] + 221 | if (badness[a[i]][b[j]]) { + | ~^~~ +abi.c:226:39: warning: array subscript has type 'char' [-Wchar-subscripts] + 226 | l=0 && r>=0 && badness[a[l]][b[r]]==0 + | ~^~~ +abi.c:294:38: warning: array subscript has type 'char' [-Wchar-subscripts] + 294 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 + | ~^~~ +abi.c:301:23: warning: array subscript has type 'char' [-Wchar-subscripts] + 301 | if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 + | ~^~~ +abi.c:313:38: warning: array subscript has type 'char' [-Wchar-subscripts] + 313 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 + | ~^~~ +abi.c:320:23: warning: array subscript has type 'char' [-Wchar-subscripts] + 320 | if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 + | ~^~~ +abi.c:334:38: warning: array subscript has type 'char' [-Wchar-subscripts] + 334 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 + | ~^~~ +abi.c:341:23: warning: array subscript has type 'char' [-Wchar-subscripts] + 341 | if ((count+=badness[a[l]][b[r]])left), &(ptr->right)); + | ^~~~~~~~~~~~ qual_trim.c:434:1: warning: "/*" within comment [-Wcomment] 434 | /* Determines a single clean range, after recursively considering all of | @@ -857,6 +916,9 @@ qual_trim.c:437:1: warning: "/*" within comment [-Wcomment] 437 | /* error. | +lucy.c:669:5: warning: implicit declaration of function 'prepare_abi_mask' [-Wimplicit-function-declaration] + 669 | prepare_abi_mask(); + | ^~~~~~~~~~~~~~~~ qual_trim.c:438:1: warning: "/*" within comment [-Wcomment] 438 | /* | @@ -926,6 +988,9 @@ qual_trim.c:596:1: warning: "/*" within comment [-Wcomment] 596 | /* its results are used to limit the range of sequence that will be | +lucy.c:713:2: warning: implicit declaration of function 'abi_align' [-Wimplicit-function-declaration] + 713 | abi_align(phred_seq, ptr->len, abi_seq, bases, &left, &right); + | ^~~~~~~~~ qual_trim.c:597:1: warning: "/*" within comment [-Wcomment] 597 | /* considered by that function. | @@ -956,10 +1021,6 @@ qual_trim.c:685:1: warning: "/*" within comment [-Wcomment] 685 | /* ( for each window size) | -lucy.c: In function 'work_splice': -lucy.c:206:5: warning: implicit declaration of function 'splice_align_left' [-Wimplicit-function-declaration] - 206 | splice_align_left(id, target_seq[id], - | ^~~~~~~~~~~~~~~~~ qual_trim.c:686:1: warning: "/*" within comment [-Wcomment] 686 | /* double max_avg_error, (maximum allowed average probability of error) | @@ -995,6 +1056,9 @@ qual_trim.c:794:1: warning: "/*" within comment [-Wcomment] 794 | /* | +lucy.c:792:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] + 792 | (i=(int)fgets(buf, BUFFER_LENGTH, spl_file)) && buf[0]!='>'; ) { + | ^ qual_trim.c:795:1: warning: "/*" within comment [-Wcomment] 795 | /* Globals used: | @@ -1025,13 +1089,6 @@ qual_trim.c:828:1: warning: "/*" within comment [-Wcomment] 828 | /* | -lucy.c:247:7: warning: implicit declaration of function 'splice_align_right' [-Wimplicit-function-declaration] - 247 | splice_align_right(id, target_seq[id]+seqs[i].left, - | ^~~~~~~~~~~~~~~~~~ -lucy.c: At top level: -lucy.c:284:1: warning: return type defaults to 'int' [-Wimplicit-int] - 284 | main (argc, argv) - | ^~~~ qual_trim.c:829:1: warning: "/*" within comment [-Wcomment] 829 | /* Globals used: | @@ -1059,38 +1116,16 @@ qual_trim.c:837:1: warning: "/*" within comment [-Wcomment] 837 | /* | -lucy.c: In function 'main': -lucy.c:361:9: warning: implicit declaration of function 'set_bracket' [-Wimplicit-function-declaration] - 361 | set_bracket(bracket_size, bracket_err); - | ^~~~~~~~~~~ -lucy.c:469:5: warning: implicit declaration of function 'default_windows' [-Wimplicit-function-declaration] - 469 | default_windows(); - | ^~~~~~~~~~~~~~~ -lucy.c:531:51: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] - 531 | if (pthread_create(&threads[i], NULL, worker, (void*)i)) - | ^ -vector.c: In function 'tag_code': -vector.c:44:10: warning: 'tmp' may be used uninitialized in this function [-Wmaybe-uninitialized] - 44 | return tmp; - | ^~~ -lucy.c:639:7: warning: implicit declaration of function 'quality_trim' [-Wimplicit-function-declaration] - 639 | quality_trim(conf_val_raw, j, minimum, &(ptr->left), &(ptr->right)); - | ^~~~~~~~~~~~ -lucy.c:669:5: warning: implicit declaration of function 'prepare_abi_mask' [-Wimplicit-function-declaration] - 669 | prepare_abi_mask(); - | ^~~~~~~~~~~~~~~~ -lucy.c:713:2: warning: implicit declaration of function 'abi_align' [-Wimplicit-function-declaration] - 713 | abi_align(phred_seq, ptr->len, abi_seq, bases, &left, &right); - | ^~~~~~~~~ -lucy.c:792:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] - 792 | (i=(int)fgets(buf, BUFFER_LENGTH, spl_file)) && buf[0]!='>'; ) { - | ^ lucy.c:891:7: warning: implicit declaration of function 'poly_at_left' [-Wimplicit-function-declaration] 891 | left=poly_at_left(&phred_seq[seqs[i].left], | ^~~~~~~~~~~~ lucy.c:894:8: warning: implicit declaration of function 'poly_at_right' [-Wimplicit-function-declaration] 894 | right=poly_at_right(&phred_seq[seqs[i].right], | ^~~~~~~~~~~~~ +abi.c: In function 'abi_code': +abi.c:84:10: warning: 'tmp' may be used uninitialized in this function [-Wmaybe-uninitialized] + 84 | return tmp; + | ^~~ lucy.c:934:5: warning: implicit declaration of function 'construct_vector_tags' [-Wimplicit-function-declaration] 934 | construct_vector_tags(vec_seq, bases); | ^~~~~~~~~~~~~~~~~~~~~ @@ -1210,12 +1245,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3170/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3170/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2037 and its subdirectories -I: Current time: Sun Oct 9 19:35:30 -12 2022 -I: pbuilder-time-stamp: 1665387330 +I: removing directory /srv/workspace/pbuilder/3170 and its subdirectories +I: Current time: Tue Sep 7 15:13:36 +14 2021 +I: pbuilder-time-stamp: 1630977216