Diff of the two buildlogs: -- --- b1/build.log 2021-07-07 00:54:10.851028842 +0000 +++ b2/build.log 2021-07-07 01:00:54.267974735 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jul 6 12:40:22 -12 2021 -I: pbuilder-time-stamp: 1625618422 +I: Current time: Tue Aug 9 21:17:15 +14 2022 +I: pbuilder-time-stamp: 1660029435 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./molmodel_3.0~svn842-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.Tld0NCh3/trustedkeys.kbx': General error -gpgv: Signature made Wed Jun 17 16:27:13 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.GKsxmo87/trustedkeys.kbx': General error +gpgv: Signature made Thu Jun 18 18:27:13 2020 +14 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key @@ -29,135 +29,169 @@ dpkg-source: info: applying remove-failing-tests.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/28812/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/21755/tmp/hooks/D01_modify_environment starting +debug: Running on codethink9-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/21755/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/21755/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' - DISTRIBUTION='' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='28812' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=21755 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.rbpgXTzRUD/pbuilderrc_hCNj --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.rbpgXTzRUD/b1 --logfile b1/build.log molmodel_3.0~svn842-2.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.rbpgXTzRUD/pbuilderrc_tqFf --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.rbpgXTzRUD/b2 --logfile b2/build.log --extrapackages usrmerge molmodel_3.0~svn842-2.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink16-arm64 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:18:37 UTC 2021 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:18:37 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 - -rwxr-xr-x 1 root root 1282512 Jun 21 14:26 bash - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat - -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown - -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp - -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash - -rwxr-xr-x 1 root root 101384 Sep 22 2020 date - -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd - -rwxr-xr-x 1 root root 89824 Sep 22 2020 df - -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir - -rwxr-xr-x 1 root root 76152 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 31512 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 64856 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln - -rwxr-xr-x 1 root root 52720 Feb 7 2020 login - -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls - -rwxr-xr-x 1 root root 161960 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 51368 Feb 7 02:38 more - -rwsr-xr-x 1 root root 51360 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 14496 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash - -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm - -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 5 21:25 sh -> dash - -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty - -rwsr-xr-x 1 root root 67776 Feb 7 02:38 su - -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync - -rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch - -rwxr-xr-x 1 root root 31512 Sep 22 2020 true - -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 30880 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 59584 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/28812/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1282512 Jun 22 2021 bash + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat + -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown + -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp + -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash + -rwxr-xr-x 1 root root 101384 Sep 23 2020 date + -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd + -rwxr-xr-x 1 root root 89824 Sep 23 2020 df + -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir + -rwxr-xr-x 1 root root 76152 Feb 8 2021 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 31512 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 64856 Feb 8 2021 findmnt + -rwsr-xr-x 1 root root 34824 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 93744 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln + -rwxr-xr-x 1 root root 52720 Feb 8 2020 login + -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls + -rwxr-xr-x 1 root root 161960 Feb 8 2021 lsblk + -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 51368 Feb 8 2021 more + -rwsr-xr-x 1 root root 51360 Feb 8 2021 mount + -rwxr-xr-x 1 root root 14496 Feb 8 2021 mountpoint + -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 2021 rbash -> bash + -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm + -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Aug 9 21:17 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 9 05:47 sh.distrib -> dash + -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty + -rwsr-xr-x 1 root root 67776 Feb 8 2021 su + -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync + -rwxr-xr-x 1 root root 535768 Feb 17 2021 tar + -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch + -rwxr-xr-x 1 root root 31512 Sep 23 2020 true + -rwxr-xr-x 1 root root 14264 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 30880 Feb 8 2021 umount + -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 59584 Feb 8 2021 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/21755/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -338,7 +372,7 @@ Get: 137 http://deb.debian.org/debian bullseye/main arm64 libxmu-dev arm64 2:1.1.2-2+b3 [65.5 kB] Get: 138 http://deb.debian.org/debian bullseye/main arm64 libsimbody3.6 arm64 3.6.1+dfsg-7 [2721 kB] Get: 139 http://deb.debian.org/debian bullseye/main arm64 libsimbody-dev arm64 3.6.1+dfsg-7 [2726 kB] -Fetched 72.1 MB in 2s (31.8 MB/s) +Fetched 72.1 MB in 2s (30.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) @@ -915,8 +949,45 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main arm64 libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main arm64 libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main arm64 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (2878 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26747 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/molmodel-3.0~svn842/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../molmodel_3.0~svn842-2_source.changes +hostname: Temporary failure in name resolution +I: Running cd /build/molmodel-3.0~svn842/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../molmodel_3.0~svn842-2_source.changes dpkg-buildpackage: info: source package molmodel dpkg-buildpackage: info: source version 3.0~svn842-2 dpkg-buildpackage: info: source distribution unstable @@ -976,22 +1047,22 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f sharedTarget/CMakeFiles/SimTKmolmodel.dir/build.make sharedTarget/CMakeFiles/SimTKmolmodel.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 1%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o -[ 1%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o +[ 3%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o +[ 3%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o +[ 3%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Biotype.cpp.o +[ 3%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" 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-DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o -c "/build/molmodel-3.0~svn842/src/AtomSubsystem.cpp" -[ 3%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/Biotype.cpp.o -c "/build/molmodel-3.0~svn842/src/Biotype.cpp" +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o -c "/build/molmodel-3.0~svn842/src/BondGeometry.cpp" [ 4%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Compound.cpp.o +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/Compound.cpp.o -c "/build/molmodel-3.0~svn842/src/Compound.cpp" [ 4%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/CompoundSystem.cpp.o -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o -c "/build/molmodel-3.0~svn842/src/BondGeometry.cpp" cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/CompoundSystem.cpp.o -c "/build/molmodel-3.0~svn842/src/CompoundSystem.cpp" -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/Compound.cpp.o -c "/build/molmodel-3.0~svn842/src/Compound.cpp" -[ 5%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o -c "/build/molmodel-3.0~svn842/src/DuMMForceFieldSubsystemRep.cpp" -[ 6%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystem.cpp.o +[ 5%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystem.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystem.cpp.o -c "/build/molmodel-3.0~svn842/src/DuMMForceFieldSubsystem.cpp" +[ 6%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o -c "/build/molmodel-3.0~svn842/src/DuMMForceFieldSubsystemRep.cpp" [ 6%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o -c "/build/molmodel-3.0~svn842/src/Element.cpp" [ 7%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o @@ 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make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleRigidProtein.dir/DependInfo.cmake" --color= -make -f examples/CMakeFiles/MolmodelInstallTestNoViz.dir/build.make examples/CMakeFiles/MolmodelInstallTestNoViz.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/MolmodelInstallTestNoViz.dir/DependInfo.cmake" --color= -make -f examples/CMakeFiles/ExampleLoadPdb.dir/build.make examples/CMakeFiles/ExampleLoadPdb.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleLoadPdb.dir/DependInfo.cmake" --color= +Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleCreatePropane.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleCreatePropane.dir/depend.internal". 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Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleLoadPdb2.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleLoadPdb2.dir/depend.internal". +Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/depend.internal". +Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleCreatePropane.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleLoadPdb2.dir/depend.internal". -Scanning dependencies of target ExampleSimpleProtein -make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -make -f examples/CMakeFiles/ExampleSimpleProtein.dir/build.make examples/CMakeFiles/ExampleSimpleProtein.dir/build +Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleSimpleProtein.dir/depend.internal". +Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleRigidProtein.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleRigidProtein.dir/depend.internal". -make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' +Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleFoldPolyalanine.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleFoldPolyalanine.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleRigidProtein.dir/depend.internal". -[ 21%] Building CXX object examples/CMakeFiles/ExampleSimpleProtein.dir/ExampleSimpleProtein.cpp.o -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleSimpleProtein.dir/ExampleSimpleProtein.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleSimpleProtein.cpp" -Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleCreatePropane.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleCreatePropane.dir/depend.internal". -Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleCreatePropane.dir/depend.internal". +Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleFoldPolyalanine.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/MolmodelInstallTestNoViz.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/MolmodelInstallTestNoViz.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/MolmodelInstallTestNoViz.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleLoadPdb.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleLoadPdb.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleLoadPdb.dir/depend.internal". -Scanning dependencies of target ExampleFoldPolyalanine -make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -make -f examples/CMakeFiles/ExampleFoldPolyalanine.dir/build.make examples/CMakeFiles/ExampleFoldPolyalanine.dir/build -make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' Scanning dependencies of target ExampleRigidProtein -make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -make -f examples/CMakeFiles/ExampleRigidProtein.dir/build.make examples/CMakeFiles/ExampleRigidProtein.dir/build -[ 22%] Building CXX object examples/CMakeFiles/ExampleFoldPolyalanine.dir/ExampleFoldPolyalanine.cpp.o -make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleFoldPolyalanine.dir/ExampleFoldPolyalanine.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleFoldPolyalanine.cpp" +Scanning dependencies of target ExampleAdenylateMobilitiesVMD +Scanning dependencies of target ExampleSimpleProtein +Scanning dependencies of target ExampleFoldPolyalanine +Scanning dependencies of target ExampleLoadPdb2 Scanning dependencies of target ExampleCreatePropane Scanning dependencies of target ExampleLoadPdb +Scanning dependencies of target MolmodelInstallTestNoViz make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -make -f examples/CMakeFiles/ExampleCreatePropane.dir/build.make examples/CMakeFiles/ExampleCreatePropane.dir/build make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -make -f examples/CMakeFiles/ExampleLoadPdb.dir/build.make examples/CMakeFiles/ExampleLoadPdb.dir/build -Scanning dependencies of target ExampleAdenylateMobilitiesVMD -make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 23%] Building CXX object examples/CMakeFiles/ExampleRigidProtein.dir/ExampleRigidProtein.cpp.o -Scanning dependencies of target ExampleLoadPdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -make -f examples/CMakeFiles/ExampleLoadPdb2.dir/build.make examples/CMakeFiles/ExampleLoadPdb2.dir/build -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleRigidProtein.dir/ExampleRigidProtein.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleRigidProtein.cpp" +make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' +make -f examples/CMakeFiles/ExampleSimpleProtein.dir/build.make examples/CMakeFiles/ExampleSimpleProtein.dir/build +make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/build.make examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/build -[ 24%] Building CXX object examples/CMakeFiles/ExampleLoadPdb.dir/ExampleLoadPdb.cpp.o +make -f examples/CMakeFiles/ExampleLoadPdb2.dir/build.make examples/CMakeFiles/ExampleLoadPdb2.dir/build +make -f examples/CMakeFiles/ExampleCreatePropane.dir/build.make examples/CMakeFiles/ExampleCreatePropane.dir/build +make -f examples/CMakeFiles/ExampleFoldPolyalanine.dir/build.make examples/CMakeFiles/ExampleFoldPolyalanine.dir/build +make -f examples/CMakeFiles/ExampleRigidProtein.dir/build.make examples/CMakeFiles/ExampleRigidProtein.dir/build +make -f examples/CMakeFiles/MolmodelInstallTestNoViz.dir/build.make examples/CMakeFiles/MolmodelInstallTestNoViz.dir/build +make -f examples/CMakeFiles/ExampleLoadPdb.dir/build.make examples/CMakeFiles/ExampleLoadPdb.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleLoadPdb.dir/ExampleLoadPdb.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleLoadPdb.cpp" -Scanning dependencies of target MolmodelInstallTestNoViz -make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -make -f examples/CMakeFiles/MolmodelInstallTestNoViz.dir/build.make examples/CMakeFiles/MolmodelInstallTestNoViz.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 25%] Building CXX object examples/CMakeFiles/ExampleCreatePropane.dir/ExampleCreatePropane.cpp.o -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleCreatePropane.dir/ExampleCreatePropane.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleCreatePropane.cpp" -[ 25%] Building CXX object examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/ExampleAdenylateMobilitiesVMD.cpp.o -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/ExampleAdenylateMobilitiesVMD.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleAdenylateMobilitiesVMD.cpp" -[ 25%] Building CXX object examples/CMakeFiles/ExampleLoadPdb2.dir/ExampleLoadPdb2.cpp.o -[ 25%] Building CXX object examples/CMakeFiles/MolmodelInstallTestNoViz.dir/MolmodelInstallTestNoViz.cpp.o +make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' +[ 21%] Building CXX object examples/CMakeFiles/ExampleSimpleProtein.dir/ExampleSimpleProtein.cpp.o +[ 21%] Building CXX object examples/CMakeFiles/ExampleLoadPdb2.dir/ExampleLoadPdb2.cpp.o +[ 21%] Building CXX object examples/CMakeFiles/MolmodelInstallTestNoViz.dir/MolmodelInstallTestNoViz.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleLoadPdb2.dir/ExampleLoadPdb2.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleLoadPdb2.cpp" +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleSimpleProtein.dir/ExampleSimpleProtein.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleSimpleProtein.cpp" cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/MolmodelInstallTestNoViz.dir/MolmodelInstallTestNoViz.cpp.o -c "/build/molmodel-3.0~svn842/examples/MolmodelInstallTestNoViz.cpp" +[ 22%] Building CXX object examples/CMakeFiles/ExampleRigidProtein.dir/ExampleRigidProtein.cpp.o +[ 24%] Building CXX object examples/CMakeFiles/ExampleFoldPolyalanine.dir/ExampleFoldPolyalanine.cpp.o +[ 23%] Building CXX object examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/ExampleAdenylateMobilitiesVMD.cpp.o +[ 24%] Building CXX object examples/CMakeFiles/ExampleCreatePropane.dir/ExampleCreatePropane.cpp.o +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleRigidProtein.dir/ExampleRigidProtein.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleRigidProtein.cpp" +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleFoldPolyalanine.dir/ExampleFoldPolyalanine.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleFoldPolyalanine.cpp" +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/ExampleAdenylateMobilitiesVMD.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleAdenylateMobilitiesVMD.cpp" +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleCreatePropane.dir/ExampleCreatePropane.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleCreatePropane.cpp" +[ 25%] Building CXX object examples/CMakeFiles/ExampleLoadPdb.dir/ExampleLoadPdb.cpp.o +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleLoadPdb.dir/ExampleLoadPdb.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleLoadPdb.cpp" [ 26%] Linking CXX executable ../ExampleLoadPdb cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleLoadPdb.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleLoadPdb.dir/ExampleLoadPdb.cpp.o -o ../ExampleLoadPdb -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 27%] Linking CXX executable ../ExampleLoadPdb2 +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleLoadPdb2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleLoadPdb2.dir/ExampleLoadPdb2.cpp.o -o ../ExampleLoadPdb2 -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 26%] Built target ExampleLoadPdb +[ 27%] Built target ExampleLoadPdb make -f examples/CMakeFiles/ExampleSimpleRNA.dir/build.make examples/CMakeFiles/ExampleSimpleRNA.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleSimpleRNA.dir/DependInfo.cmake" --color= @@ -1155,21 +1229,18 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f examples/CMakeFiles/ExampleSimpleRNA.dir/build.make examples/CMakeFiles/ExampleSimpleRNA.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 27%] Building CXX object examples/CMakeFiles/ExampleSimpleRNA.dir/ExampleSimpleRNA.cpp.o +[ 28%] Building CXX object examples/CMakeFiles/ExampleSimpleRNA.dir/ExampleSimpleRNA.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleSimpleRNA.dir/ExampleSimpleRNA.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleSimpleRNA.cpp" -[ 28%] Linking CXX executable ../ExampleLoadPdb2 -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleLoadPdb2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleLoadPdb2.dir/ExampleLoadPdb2.cpp.o -o ../ExampleLoadPdb2 -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 -[ 29%] Linking CXX executable ../ExampleCreatePropane -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleCreatePropane.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleCreatePropane.dir/ExampleCreatePropane.cpp.o -o ../ExampleCreatePropane -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 29%] Built target ExampleLoadPdb2 +[ 28%] Built target ExampleLoadPdb2 make -f examples/CMakeFiles/ExampleTwoArgonAtoms.dir/build.make examples/CMakeFiles/ExampleTwoArgonAtoms.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleTwoArgonAtoms.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleTwoArgonAtoms.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleTwoArgonAtoms.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleTwoArgonAtoms.dir/depend.internal". +[ 29%] Linking CXX executable ../ExampleCreatePropane +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleCreatePropane.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleCreatePropane.dir/ExampleCreatePropane.cpp.o -o ../ExampleCreatePropane -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 Scanning dependencies of target ExampleTwoArgonAtoms make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f examples/CMakeFiles/ExampleTwoArgonAtoms.dir/build.make examples/CMakeFiles/ExampleTwoArgonAtoms.dir/build @@ -1181,19 +1252,25 @@ make -f examples/CMakeFiles/ExampleTwoEthanes.dir/build.make examples/CMakeFiles/ExampleTwoEthanes.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleTwoEthanes.dir/DependInfo.cmake" --color= +[ 31%] Linking CXX executable ../ExampleRigidProtein +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleRigidProtein.dir/link.txt --verbose=1 Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleTwoEthanes.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleTwoEthanes.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleTwoEthanes.dir/depend.internal". +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleRigidProtein.dir/ExampleRigidProtein.cpp.o -o ../ExampleRigidProtein -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 Scanning dependencies of target ExampleTwoEthanes make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f examples/CMakeFiles/ExampleTwoEthanes.dir/build.make examples/CMakeFiles/ExampleTwoEthanes.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 31%] Building CXX object examples/CMakeFiles/ExampleTwoEthanes.dir/ExampleTwoEthanes.cpp.o +[ 32%] Building CXX object examples/CMakeFiles/ExampleTwoEthanes.dir/ExampleTwoEthanes.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleTwoEthanes.dir/ExampleTwoEthanes.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleTwoEthanes.cpp" -[ 32%] Linking CXX executable ../ExampleAdenylateMobilitiesVMD -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/ExampleAdenylateMobilitiesVMD.cpp.o -o ../ExampleAdenylateMobilitiesVMD -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 33%] Linking CXX executable ../ExampleSimpleProtein +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleSimpleProtein.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleSimpleProtein.dir/ExampleSimpleProtein.cpp.o -o ../ExampleSimpleProtein -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 34%] Linking CXX executable ../MolmodelInstallTestNoViz +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolmodelInstallTestNoViz.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/MolmodelInstallTestNoViz.dir/MolmodelInstallTestNoViz.cpp.o -o ../MolmodelInstallTestNoViz -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 32%] Built target ExampleAdenylateMobilitiesVMD +[ 34%] Built target ExampleRigidProtein make -f examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/build.make examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/DependInfo.cmake" --color= @@ -1203,61 +1280,55 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/build.make examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 33%] Building CXX object examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/ExampleAdenylateMobilitiesViz.cpp.o +[ 35%] Building CXX object examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/ExampleAdenylateMobilitiesViz.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleAdenylateMobilitiesViz.dir/ExampleAdenylateMobilitiesViz.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleAdenylateMobilitiesViz.cpp" -[ 34%] Linking CXX executable ../ExampleSimpleProtein -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleSimpleProtein.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleSimpleProtein.dir/ExampleSimpleProtein.cpp.o -o ../ExampleSimpleProtein -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 -[ 35%] Linking CXX executable ../MolmodelInstallTestNoViz -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolmodelInstallTestNoViz.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/MolmodelInstallTestNoViz.dir/MolmodelInstallTestNoViz.cpp.o -o ../MolmodelInstallTestNoViz -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 36%] Linking CXX executable ../ExampleAdenylateMobilitiesVMD +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/ExampleAdenylateMobilitiesVMD.cpp.o -o ../ExampleAdenylateMobilitiesVMD -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 36%] Linking CXX executable ../ExampleFoldPolyalanine +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleFoldPolyalanine.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleFoldPolyalanine.dir/ExampleFoldPolyalanine.cpp.o -o ../ExampleFoldPolyalanine -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 35%] Built target ExampleSimpleProtein +[ 36%] Built target ExampleSimpleProtein make -f examples/CMakeFiles/MolmodelInstallTest.dir/build.make examples/CMakeFiles/MolmodelInstallTest.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/MolmodelInstallTest.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/MolmodelInstallTest.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/MolmodelInstallTest.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/MolmodelInstallTest.dir/depend.internal". -Scanning dependencies of target MolmodelInstallTest -make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -make -f examples/CMakeFiles/MolmodelInstallTest.dir/build.make examples/CMakeFiles/MolmodelInstallTest.dir/build -make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 36%] Building CXX object examples/CMakeFiles/MolmodelInstallTest.dir/MolmodelInstallTest.cpp.o -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/MolmodelInstallTest.dir/MolmodelInstallTest.cpp.o -c "/build/molmodel-3.0~svn842/examples/MolmodelInstallTest.cpp" -[ 36%] Linking CXX executable ../ExampleFoldPolyalanine -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleFoldPolyalanine.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleFoldPolyalanine.dir/ExampleFoldPolyalanine.cpp.o -o ../ExampleFoldPolyalanine -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 36%] Built target MolmodelInstallTestNoViz make -f tests/CMakeFiles/TestWriteSimtimePdb.dir/build.make tests/CMakeFiles/TestWriteSimtimePdb.dir/depend +Scanning dependencies of target MolmodelInstallTest make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestWriteSimtimePdb.dir/DependInfo.cmake" --color= +make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' +make -f examples/CMakeFiles/MolmodelInstallTest.dir/build.make examples/CMakeFiles/MolmodelInstallTest.dir/build +make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestWriteSimtimePdb.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestWriteSimtimePdb.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestWriteSimtimePdb.dir/depend.internal". +[ 37%] Building CXX object examples/CMakeFiles/MolmodelInstallTest.dir/MolmodelInstallTest.cpp.o +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/MolmodelInstallTest.dir/MolmodelInstallTest.cpp.o -c "/build/molmodel-3.0~svn842/examples/MolmodelInstallTest.cpp" Scanning dependencies of target TestWriteSimtimePdb make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestWriteSimtimePdb.dir/build.make tests/CMakeFiles/TestWriteSimtimePdb.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 37%] Building CXX object tests/CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o +[ 38%] Building CXX object tests/CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestWriteSimtimePdb.cpp" make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 37%] Built target ExampleFoldPolyalanine +[ 38%] Built target ExampleAdenylateMobilitiesVMD make -f tests/CMakeFiles/TestTorsionPartitioner.dir/build.make tests/CMakeFiles/TestTorsionPartitioner.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestTorsionPartitioner.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestTorsionPartitioner.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestTorsionPartitioner.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestTorsionPartitioner.dir/depend.internal". -[ 38%] Linking CXX executable ../ExampleRigidProtein -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleRigidProtein.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleRigidProtein.dir/ExampleRigidProtein.cpp.o -o ../ExampleRigidProtein -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 Scanning dependencies of target TestTorsionPartitioner make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestTorsionPartitioner.dir/build.make tests/CMakeFiles/TestTorsionPartitioner.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 39%] Building CXX object tests/CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestTorsionPartitioner.cpp" -make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 39%] Built target ExampleRigidProtein +[ 39%] Built target ExampleFoldPolyalanine make -f tests/CMakeFiles/TestTinkerAmber.dir/build.make tests/CMakeFiles/TestTinkerAmber.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestTinkerAmber.dir/DependInfo.cmake" --color= @@ -1272,9 +1343,12 @@ [ 41%] Linking CXX executable ../ExampleTwoArgonAtoms cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleTwoArgonAtoms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleTwoArgonAtoms.dir/ExampleTwoArgonAtoms.cpp.o -o ../ExampleTwoArgonAtoms -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 -[ 41%] Linking CXX executable ../ExampleTwoEthanes -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleTwoEthanes.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleTwoEthanes.dir/ExampleTwoEthanes.cpp.o -o ../ExampleTwoEthanes -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 41%] Linking CXX executable ../TestTinkerAmber +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestTinkerAmber.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o -o ../TestTinkerAmber -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 41%] Linking CXX executable ../ExampleSimpleRNA +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleSimpleRNA.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleSimpleRNA.dir/ExampleSimpleRNA.cpp.o -o ../ExampleSimpleRNA -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 41%] Built target ExampleTwoArgonAtoms make -f tests/CMakeFiles/TestWriteDefaultPdb.dir/build.make tests/CMakeFiles/TestWriteDefaultPdb.dir/depend @@ -1282,17 +1356,20 @@ cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestWriteDefaultPdb.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestWriteDefaultPdb.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestWriteDefaultPdb.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestWriteDefaultPdb.dir/depend.internal". +[ 41%] Linking CXX executable ../ExampleTwoEthanes +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleTwoEthanes.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleTwoEthanes.dir/ExampleTwoEthanes.cpp.o -o ../ExampleTwoEthanes -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' Scanning dependencies of target TestWriteDefaultPdb make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestWriteDefaultPdb.dir/build.make tests/CMakeFiles/TestWriteDefaultPdb.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 42%] Building CXX object tests/CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestWriteDefaultPdb.cpp" -make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 42%] Built target ExampleTwoEthanes +[ 41%] Built target TestTinkerAmber make -f tests/CMakeFiles/TestShortPdbLines.dir/build.make tests/CMakeFiles/TestShortPdbLines.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestShortPdbLines.dir/DependInfo.cmake" --color= +[ 42%] Building CXX object tests/CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestWriteDefaultPdb.cpp" Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestShortPdbLines.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestShortPdbLines.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestShortPdbLines.dir/depend.internal". Scanning dependencies of target TestShortPdbLines @@ -1301,9 +1378,6 @@ make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 42%] Building CXX object tests/CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestShortPdbLines.cpp" -[ 42%] Linking CXX executable ../ExampleSimpleRNA -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleSimpleRNA.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleSimpleRNA.dir/ExampleSimpleRNA.cpp.o -o ../ExampleSimpleRNA -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 42%] Built target ExampleSimpleRNA make -f tests/CMakeFiles/TestGetAtomName.dir/build.make tests/CMakeFiles/TestGetAtomName.dir/depend @@ -1317,28 +1391,22 @@ make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 43%] Building CXX object tests/CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestGetAtomName.cpp" -[ 43%] Linking CXX executable ../TestTinkerAmber -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestTinkerAmber.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o -o ../TestTinkerAmber -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 43%] Built target TestTinkerAmber +[ 43%] Built target ExampleTwoEthanes make -f tests/CMakeFiles/TestNoseHooverThermostat.dir/build.make tests/CMakeFiles/TestNoseHooverThermostat.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestNoseHooverThermostat.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestNoseHooverThermostat.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestNoseHooverThermostat.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestNoseHooverThermostat.dir/depend.internal". -[ 44%] Linking CXX executable ../MolmodelInstallTest -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolmodelInstallTest.dir/link.txt --verbose=1 Scanning dependencies of target TestNoseHooverThermostat make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestNoseHooverThermostat.dir/build.make tests/CMakeFiles/TestNoseHooverThermostat.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/MolmodelInstallTest.dir/MolmodelInstallTest.cpp.o -o ../MolmodelInstallTest -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 -[ 44%] Building CXX object tests/CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o +[ 43%] Building CXX object tests/CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestNoseHooverThermostat.cpp" -[ 44%] Linking CXX executable ../ExampleAdenylateMobilitiesViz -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleAdenylateMobilitiesViz.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleAdenylateMobilitiesViz.dir/ExampleAdenylateMobilitiesViz.cpp.o -o ../ExampleAdenylateMobilitiesViz -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 44%] Linking CXX executable ../MolmodelInstallTest +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolmodelInstallTest.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/MolmodelInstallTest.dir/MolmodelInstallTest.cpp.o -o ../MolmodelInstallTest -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 44%] Built target MolmodelInstallTest make -f tests/CMakeFiles/TestGbsa.dir/build.make tests/CMakeFiles/TestGbsa.dir/depend @@ -1352,6 +1420,9 @@ make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 44%] Building CXX object tests/CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestGbsa.cpp" +[ 44%] Linking CXX executable ../ExampleAdenylateMobilitiesViz +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleAdenylateMobilitiesViz.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleAdenylateMobilitiesViz.dir/ExampleAdenylateMobilitiesViz.cpp.o -o ../ExampleAdenylateMobilitiesViz -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 44%] Built target ExampleAdenylateMobilitiesViz make -f tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/build.make tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/depend @@ -1368,11 +1439,8 @@ [ 45%] Linking CXX executable ../TestWriteSimtimePdb cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestWriteSimtimePdb.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o -o ../TestWriteSimtimePdb -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 -[ 46%] Linking CXX executable ../TestTorsionPartitioner -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestTorsionPartitioner.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o -o ../TestTorsionPartitioner -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 46%] Built target TestWriteSimtimePdb +[ 45%] Built target TestWriteSimtimePdb make -f tests/CMakeFiles/TestPositiveControl.dir/build.make tests/CMakeFiles/TestPositiveControl.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestPositiveControl.dir/DependInfo.cmake" --color= @@ -1382,10 +1450,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestPositiveControl.dir/build.make tests/CMakeFiles/TestPositiveControl.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 47%] Building CXX object tests/CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o +[ 46%] Building CXX object tests/CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestPositiveControl.cpp" +[ 46%] Linking CXX executable ../TestPositiveControl +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPositiveControl.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o -o ../TestPositiveControl -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 47%] Built target TestTorsionPartitioner +[ 46%] Built target TestPositiveControl make -f tests/CMakeFiles/TestBodyIds.dir/build.make tests/CMakeFiles/TestBodyIds.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestBodyIds.dir/DependInfo.cmake" --color= @@ -1395,13 +1466,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestBodyIds.dir/build.make tests/CMakeFiles/TestBodyIds.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 47%] Building CXX object tests/CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o +[ 46%] Building CXX object tests/CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestBodyIds.cpp" -[ 47%] Linking CXX executable ../TestPositiveControl -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPositiveControl.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o -o ../TestPositiveControl -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 47%] Linking CXX executable ../TestTorsionPartitioner +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestTorsionPartitioner.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o -o ../TestTorsionPartitioner -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 47%] Built target TestPositiveControl +[ 47%] Built target TestTorsionPartitioner make -f tests/CMakeFiles/TestEthane.dir/build.make tests/CMakeFiles/TestEthane.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestEthane.dir/DependInfo.cmake" --color= @@ -1439,17 +1510,20 @@ cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestProteinDihedrals.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestProteinDihedrals.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestProteinDihedrals.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestProteinDihedrals.dir/depend.internal". -[ 52%] Linking CXX executable ../TestGetAtomName -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestGetAtomName.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o -o ../TestGetAtomName -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 Scanning dependencies of target TestProteinDihedrals make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestProteinDihedrals.dir/build.make tests/CMakeFiles/TestProteinDihedrals.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 52%] Building CXX object tests/CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o +[ 51%] Building CXX object tests/CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestProteinDihedrals.cpp" +[ 52%] Linking CXX executable ../TestNoseHooverThermostat +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestNoseHooverThermostat.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o -o ../TestNoseHooverThermostat -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 53%] Linking CXX executable ../TestGetAtomName +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestGetAtomName.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o -o ../TestGetAtomName -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 52%] Built target TestGetAtomName +[ 53%] Built target TestNoseHooverThermostat make -f tests/CMakeFiles/TestBiotypeSelfCode.dir/build.make tests/CMakeFiles/TestBiotypeSelfCode.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestBiotypeSelfCode.dir/DependInfo.cmake" --color= @@ -1459,16 +1533,10 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestBiotypeSelfCode.dir/build.make tests/CMakeFiles/TestBiotypeSelfCode.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 53%] Building CXX object tests/CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o +[ 54%] Building CXX object tests/CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestBiotypeSelfCode.cpp" -[ 54%] Linking CXX executable ../TestGbsa -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestGbsa.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o -o ../TestGbsa -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 -[ 55%] Linking CXX executable ../TestNoseHooverThermostat -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestNoseHooverThermostat.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o -o ../TestNoseHooverThermostat -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 55%] Built target TestGbsa +[ 54%] Built target TestGetAtomName make -f tests/CMakeFiles/TestForeignBodyIds.dir/build.make tests/CMakeFiles/TestForeignBodyIds.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestForeignBodyIds.dir/DependInfo.cmake" --color= @@ -1478,24 +1546,27 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestForeignBodyIds.dir/build.make tests/CMakeFiles/TestForeignBodyIds.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 56%] Building CXX object tests/CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o +[ 55%] Building CXX object tests/CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestForeignBodyIds.cpp" +[ 56%] Linking CXX executable ../TestGbsa +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestGbsa.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o -o ../TestGbsa -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 56%] Built target TestNoseHooverThermostat +[ 56%] Built target TestGbsa make -f tests/CMakeFiles/TestAtomTargetLocations.dir/build.make tests/CMakeFiles/TestAtomTargetLocations.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestAtomTargetLocations.dir/DependInfo.cmake" --color= -[ 57%] Linking CXX executable ../TestLoadVariantRnaAtomNames -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestLoadVariantRnaAtomNames.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o -o ../TestLoadVariantRnaAtomNames -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestAtomTargetLocations.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestAtomTargetLocations.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestAtomTargetLocations.dir/depend.internal". Scanning dependencies of target TestAtomTargetLocations make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestAtomTargetLocations.dir/build.make tests/CMakeFiles/TestAtomTargetLocations.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 58%] Building CXX object tests/CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o +[ 57%] Building CXX object tests/CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestAtomTargetLocations.cpp" +[ 58%] Linking CXX executable ../TestLoadVariantRnaAtomNames +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestLoadVariantRnaAtomNames.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o -o ../TestLoadVariantRnaAtomNames -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 58%] Built target TestLoadVariantRnaAtomNames make -f tests/CMakeFiles/TestSetTorsion.dir/build.make tests/CMakeFiles/TestSetTorsion.dir/depend @@ -1529,10 +1600,7 @@ cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBiotypeSelfCode.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o -o ../TestBiotypeSelfCode -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 62%] Linking CXX executable ../TestEthane -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestEthane.dir/link.txt --verbose=1 [ 62%] Built target TestBiotypeSelfCode -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestEthane.dir/TestEthane.cpp.o -o ../TestEthane -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make -f tests/CMakeFiles/TestMgSolvationEnergy.dir/build.make tests/CMakeFiles/TestMgSolvationEnergy.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestMgSolvationEnergy.dir/DependInfo.cmake" --color= @@ -1544,8 +1612,14 @@ make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 63%] Building CXX object tests/CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestMgSolvationEnergy.cpp" +[ 63%] Linking CXX executable ../TestEthane +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestEthane.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestEthane.dir/TestEthane.cpp.o -o ../TestEthane -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 64%] Linking CXX executable ../TestProteinDihedrals +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestProteinDihedrals.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o -o ../TestProteinDihedrals -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 63%] Built target TestEthane +[ 64%] Built target TestEthane make -f tests/CMakeFiles/TestLoneAtomCoordinates.dir/build.make tests/CMakeFiles/TestLoneAtomCoordinates.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestLoneAtomCoordinates.dir/DependInfo.cmake" --color= @@ -1555,21 +1629,18 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestLoneAtomCoordinates.dir/build.make tests/CMakeFiles/TestLoneAtomCoordinates.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 64%] Building CXX object tests/CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o +[ 65%] Building CXX object tests/CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestLoneAtomCoordinates.cpp" -[ 65%] Linking CXX executable ../TestProteinDihedrals -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestProteinDihedrals.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o -o ../TestProteinDihedrals -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 65%] Linking CXX executable ../TestBiopolymer +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBiopolymer.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o -o ../TestBiopolymer -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 65%] Built target TestProteinDihedrals make -f tests/CMakeFiles/TestMethanol.dir/build.make tests/CMakeFiles/TestMethanol.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestMethanol.dir/DependInfo.cmake" --color= -[ 65%] Linking CXX executable ../TestBiopolymer -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBiopolymer.dir/link.txt --verbose=1 Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestMethanol.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestMethanol.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestMethanol.dir/depend.internal". -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o -o ../TestBiopolymer -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 Scanning dependencies of target TestMethanol make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestMethanol.dir/build.make tests/CMakeFiles/TestMethanol.dir/build @@ -1589,14 +1660,11 @@ make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 67%] Building CXX object tests/CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestNucleotide2.cpp" -[ 68%] Linking CXX executable ../TestAtomTargetLocations -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestAtomTargetLocations.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o -o ../TestAtomTargetLocations -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 -[ 69%] Linking CXX executable ../TestForeignBodyIds +[ 68%] Linking CXX executable ../TestForeignBodyIds cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestForeignBodyIds.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o -o ../TestForeignBodyIds -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 69%] Built target TestAtomTargetLocations +[ 68%] Built target TestForeignBodyIds make -f tests/CMakeFiles/TestOxygenMolecule.dir/build.make tests/CMakeFiles/TestOxygenMolecule.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestOxygenMolecule.dir/DependInfo.cmake" --color= @@ -1606,10 +1674,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestOxygenMolecule.dir/build.make tests/CMakeFiles/TestOxygenMolecule.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 69%] Building CXX object tests/CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o +[ 68%] Building CXX object tests/CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestOxygenMolecule.cpp" +[ 69%] Linking CXX executable ../TestAtomTargetLocations +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestAtomTargetLocations.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o -o ../TestAtomTargetLocations -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 69%] Built target TestForeignBodyIds +[ 69%] Built target TestAtomTargetLocations make -f tests/CMakeFiles/TestVelocityRescalingThermostat.dir/build.make tests/CMakeFiles/TestVelocityRescalingThermostat.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestVelocityRescalingThermostat.dir/DependInfo.cmake" --color= @@ -1621,11 +1692,11 @@ make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 70%] Building CXX object tests/CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestVelocityRescalingThermostat.cpp" -[ 71%] Linking CXX executable ../TestSetTorsion -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSetTorsion.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o -o ../TestSetTorsion -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 71%] Linking CXX executable ../TestMethaneCartesian +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMethaneCartesian.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o -o ../TestMethaneCartesian -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 71%] Built target TestSetTorsion +[ 71%] Built target TestMethaneCartesian make -f tests/CMakeFiles/TestCompoundTransforms.dir/build.make tests/CMakeFiles/TestCompoundTransforms.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestCompoundTransforms.dir/DependInfo.cmake" --color= @@ -1637,11 +1708,11 @@ make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 72%] Building CXX object tests/CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestCompoundTransforms.cpp" -[ 73%] Linking CXX executable ../TestMethaneCartesian -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMethaneCartesian.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o -o ../TestMethaneCartesian -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 73%] Linking CXX executable ../TestSetTorsion +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSetTorsion.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o -o ../TestSetTorsion -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 73%] Built target TestMethaneCartesian +[ 73%] Built target TestSetTorsion make -f tests/CMakeFiles/TestPartitionerDihedrals.dir/build.make tests/CMakeFiles/TestPartitionerDihedrals.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestPartitionerDihedrals.dir/DependInfo.cmake" --color= @@ -1684,8 +1755,8 @@ make -f tests/CMakeFiles/TestPartitioner.dir/build.make tests/CMakeFiles/TestPartitioner.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 77%] Building CXX object tests/CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestPartitioner.cpp" [ 77%] Linking CXX executable ../TestMethanol +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestPartitioner.cpp" cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMethanol.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o -o ../TestMethanol -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' @@ -1717,11 +1788,11 @@ make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 80%] Building CXX object tests/CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestRiboseMobilizer.cpp" -[ 80%] Linking CXX executable ../TestVelocityRescalingThermostat -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVelocityRescalingThermostat.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o -o ../TestVelocityRescalingThermostat -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 81%] Linking CXX executable ../TestOxygenMolecule +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestOxygenMolecule.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o -o ../TestOxygenMolecule -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 80%] Built target TestVelocityRescalingThermostat +[ 81%] Built target TestOxygenMolecule make -f tests/CMakeFiles/TestRna.dir/build.make tests/CMakeFiles/TestRna.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestRna.dir/DependInfo.cmake" --color= @@ -1731,13 +1802,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestRna.dir/build.make tests/CMakeFiles/TestRna.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 80%] Building CXX object tests/CMakeFiles/TestRna.dir/TestRna.cpp.o +[ 81%] Building CXX object tests/CMakeFiles/TestRna.dir/TestRna.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestRna.dir/TestRna.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestRna.cpp" -[ 81%] Linking CXX executable ../TestOxygenMolecule -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestOxygenMolecule.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o -o ../TestOxygenMolecule -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 81%] Linking CXX executable ../TestVelocityRescalingThermostat +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVelocityRescalingThermostat.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o -o ../TestVelocityRescalingThermostat -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 81%] Built target TestOxygenMolecule +[ 81%] Built target TestVelocityRescalingThermostat make -f tests/CMakeFiles/TestFitMagnesiums.dir/build.make tests/CMakeFiles/TestFitMagnesiums.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestFitMagnesiums.dir/DependInfo.cmake" --color= @@ -1752,11 +1823,8 @@ [ 83%] Linking CXX executable ../TestCompoundTransforms cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCompoundTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o -o ../TestCompoundTransforms -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 -[ 84%] Linking CXX executable ../TestPartitionerDihedrals -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPartitionerDihedrals.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o -o ../TestPartitionerDihedrals -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 84%] Built target TestCompoundTransforms +[ 83%] Built target TestCompoundTransforms make -f tests/CMakeFiles/TestDuMMForces.dir/build.make tests/CMakeFiles/TestDuMMForces.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestDuMMForces.dir/DependInfo.cmake" --color= @@ -1766,8 +1834,11 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestDuMMForces.dir/build.make tests/CMakeFiles/TestDuMMForces.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 84%] Building CXX object tests/CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o +[ 83%] Building CXX object tests/CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestDuMMForces.cpp" +[ 84%] Linking CXX executable ../TestPartitionerDihedrals +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPartitionerDihedrals.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o -o ../TestPartitionerDihedrals -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 84%] Built target TestPartitionerDihedrals make -f tests/CMakeFiles/TestSanityDuMM.dir/build.make tests/CMakeFiles/TestSanityDuMM.dir/depend @@ -1800,16 +1871,16 @@ [ 87%] Linking CXX executable ../TestRiboseMobilizer cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestRiboseMobilizer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o -o ../TestRiboseMobilizer -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 88%] Linking CXX executable ../TestProtein +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestProtein.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestProtein.dir/TestProtein.cpp.o -o ../TestProtein -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 87%] Built target TestRiboseMobilizer +[ 88%] Built target TestRiboseMobilizer make -f tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/build.make tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests/adhoc" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/DependInfo.cmake" --color= -[ 88%] Linking CXX executable ../TestProtein -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestProtein.dir/link.txt --verbose=1 Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/depend.internal". -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestProtein.dir/TestProtein.cpp.o -o ../TestProtein -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 Scanning dependencies of target TestEthaneFromSimbody make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/build.make tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/build @@ -1864,6 +1935,9 @@ [ 92%] Linking CXX executable ../TestRna cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestRna.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestRna.dir/TestRna.cpp.o -o ../TestRna -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 92%] Linking CXX executable ../TestFitMagnesiums +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestFitMagnesiums.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o -o ../TestFitMagnesiums -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 92%] Built target TestRna make -f tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/depend @@ -1877,9 +1951,6 @@ make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 93%] Building CXX object tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o -c "/build/molmodel-3.0~svn842/tests/adhoc/RemoveMassCenterDrift.cpp" -[ 93%] Linking CXX executable ../TestFitMagnesiums -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestFitMagnesiums.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o -o ../TestFitMagnesiums -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 93%] Built target TestFitMagnesiums make -f tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/depend @@ -1896,18 +1967,18 @@ [ 94%] Linking CXX executable ../TestDuMMForces cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestDuMMForces.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o -o ../TestDuMMForces -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 -[ 94%] Linking CXX executable ../../TestSerineWithViz -cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerineWithViz.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 94%] Built target TestDuMMForces -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o -o ../../TestSerineWithViz -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 [ 95%] Linking CXX executable ../../RemoveMassCenterDriftWithOptimizer cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o -o ../../RemoveMassCenterDriftWithOptimizer -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 95%] Built target TestSerineWithViz -make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 95%] Built target RemoveMassCenterDriftWithOptimizer +[ 95%] Linking CXX executable ../../TestSerineWithViz +cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerineWithViz.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o -o ../../TestSerineWithViz -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' +[ 95%] Built target TestSerineWithViz [ 96%] Linking CXX executable ../../TestEthaneFromSimbody cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestEthaneFromSimbody.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o -o ../../TestEthaneFromSimbody -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 @@ -1916,12 +1987,12 @@ [ 97%] Linking CXX executable ../../TestSimpleProtein cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSimpleProtein.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o -o ../../TestSimpleProtein -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 -make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' -[ 97%] Built target TestSimpleProtein [ 98%] Linking CXX executable ../../TestSodiumWithViz cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSodiumWithViz.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSodiumWithViz.dir/TestSodiumWithViz.cpp.o -o ../../TestSodiumWithViz -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' +[ 98%] Built target TestSimpleProtein +make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 98%] Built target TestSodiumWithViz [ 99%] Linking CXX executable ../../TestWriteLargerPdb cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestWriteLargerPdb.dir/link.txt --verbose=1 @@ -2066,9 +2137,9 @@ dh_gencontrol dh_md5sums dh_builddeb +dpkg-deb: building package 'libsimtkmolmodel3.0' in '../libsimtkmolmodel3.0_3.0~svn842-2_arm64.deb'. dpkg-deb: building package 'libsimtkmolmodel-dev' in '../libsimtkmolmodel-dev_3.0~svn842-2_arm64.deb'. dpkg-deb: building package 'libsimtkmolmodel3.0-dbgsym' in '../libsimtkmolmodel3.0-dbgsym_3.0~svn842-2_arm64.deb'. -dpkg-deb: building package 'libsimtkmolmodel3.0' in '../libsimtkmolmodel3.0_3.0~svn842-2_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../molmodel_3.0~svn842-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2076,12 +2147,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/21755/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/21755/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/28812 and its subdirectories -I: Current time: Tue Jul 6 12:54:09 -12 2021 -I: pbuilder-time-stamp: 1625619249 +I: removing directory /srv/workspace/pbuilder/21755 and its subdirectories +I: Current time: Tue Aug 9 21:23:53 +14 2022 +I: pbuilder-time-stamp: 1660029833