Diff of the two buildlogs: -- --- b1/build.log 2021-07-12 18:02:47.471741660 +0000 +++ b2/build.log 2021-07-12 18:08:28.686944776 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jul 12 05:52:22 -12 2021 -I: pbuilder-time-stamp: 1626112342 +I: Current time: Tue Jul 13 08:03:04 +14 2021 +I: pbuilder-time-stamp: 1626112984 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./mummer_3.23+dfsg-7.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.bg_UIaoh/trustedkeys.kbx': General error -gpgv: Signature made Sat Dec 26 06:42:46 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.0i4c2mwI/trustedkeys.kbx': General error +gpgv: Signature made Sun Dec 27 08:42:46 2020 +14 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key @@ -40,135 +40,169 @@ dpkg-source: info: applying reproducible-build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4968/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/11808/tmp/hooks/D01_modify_environment starting +debug: Running on virt64b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/11808/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/11808/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='c7be08947404415a8d89a1f62ed9da08' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4968' - PS1='# ' - PS2='> ' + INVOCATION_ID=28c59ad2b5554e149647a10309d2d1de + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=11808 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.uQsxjYr8FU/pbuilderrc_4pab --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.uQsxjYr8FU/b1 --logfile b1/build.log mummer_3.23+dfsg-7.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.uQsxjYr8FU/pbuilderrc_jFKC --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.uQsxjYr8FU/b2 --logfile b2/build.log --extrapackages usrmerge mummer_3.23+dfsg-7.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux wbq0 5.10.0-7-armmp #1 SMP Debian 5.10.40-1 (2021-05-28) armv7l GNU/Linux + Linux i-capture-the-hostname 5.10.0-7-arm64 #1 SMP Debian 5.10.40-1 (2021-05-28) aarch64 GNU/Linux I: ls -l /bin total 3580 - -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat - -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown - -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp - -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash - -rwxr-xr-x 1 root root 75880 Sep 22 2020 date - -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd - -rwxr-xr-x 1 root root 59912 Sep 22 2020 df - -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir - -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 22496 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln - -rwxr-xr-x 1 root root 35068 Feb 7 2020 login - -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls - -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more - -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash - -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm - -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 8 21:27 sh -> dash - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty - -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync - -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch - -rwxr-xr-x 1 root root 22496 Sep 22 2020 true - -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/4968/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 816764 Jun 22 16:26 bash + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat + -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown + -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp + -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash + -rwxr-xr-x 1 root root 75880 Sep 23 2020 date + -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd + -rwxr-xr-x 1 root root 59912 Sep 23 2020 df + -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir + -rwxr-xr-x 1 root root 55012 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 22496 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 47492 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 26076 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 64212 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln + -rwxr-xr-x 1 root root 35068 Feb 8 2020 login + -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls + -rwxr-xr-x 1 root root 99940 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 34408 Feb 8 04:38 more + -rwsr-xr-x 1 root root 34400 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 9824 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash + -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm + -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 13 08:03 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 9 23:24 sh.distrib -> dash + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty + -rwsr-xr-x 1 root root 46704 Feb 8 04:38 su + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync + -rwxr-xr-x 1 root root 340872 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch + -rwxr-xr-x 1 root root 22496 Sep 23 2020 true + -rwxr-xr-x 1 root root 9636 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 38512 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/11808/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -291,7 +325,7 @@ Get: 79 http://deb.debian.org/debian bullseye/main armhf texlive-fonts-recommended all 2020.20210202-3 [5002 kB] Get: 80 http://deb.debian.org/debian bullseye/main armhf texlive-latex-base all 2020.20210202-3 [1120 kB] Get: 81 http://deb.debian.org/debian bullseye/main armhf texlive-latex-recommended all 2020.20210202-3 [14.5 MB] -Fetched 81.4 MB in 7s (11.9 MB/s) +Fetched 81.4 MB in 8s (9643 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) @@ -649,8 +683,45 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main armhf libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main armhf libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main armhf libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main armhf usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (1153 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 31598 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/mummer-3.23+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mummer_3.23+dfsg-7_source.changes +hostname: Name or service not known +I: Running cd /build/mummer-3.23+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mummer_3.23+dfsg-7_source.changes dpkg-buildpackage: info: source package mummer dpkg-buildpackage: info: source version 3.23+dfsg-7 dpkg-buildpackage: info: source distribution unstable @@ -660,7 +731,7 @@ debian/rules clean dh clean dh_auto_clean - make -j3 clean + make -j4 clean make[1]: Entering directory '/build/mummer-3.23+dfsg' rm -f *~ core* cd /build/mummer-3.23+dfsg/src/kurtz; make clean @@ -713,36 +784,37 @@ FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer \ FINAL_SCRIPT_DIR=/usr/share/perl5/ \ CFLAGS="-g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" - make -j3 "INSTALL=install --strip-program=true" BIN_DIR=/build/mummer-3.23\+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/build/mummer-3.23\+dfsg/debian/tmp/usr/lib/mummer FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer FINAL_SCRIPT_DIR=/usr/share/perl5/ "CFLAGS=-g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc" "CXXFLAGS=-g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" + make -j4 "INSTALL=install --strip-program=true" BIN_DIR=/build/mummer-3.23\+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/build/mummer-3.23\+dfsg/debian/tmp/usr/lib/mummer FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer FINAL_SCRIPT_DIR=/usr/share/perl5/ "CFLAGS=-g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc" "CXXFLAGS=-g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/build/mummer-3.23+dfsg' cd /build/mummer-3.23+dfsg/src/kurtz; make mummer cd /build/mummer-3.23+dfsg/src/tigr; make CFLAGS="-g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" all cd /build/mummer-3.23+dfsg/scripts; make all make[3]: Entering directory '/build/mummer-3.23+dfsg/src/kurtz' cd libbasedir; make libbase.a +make[3]: Entering directory '/build/mummer-3.23+dfsg/src/tigr' +/usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 tigrinc.cc -c -o tigrinc.o make[3]: Entering directory '/build/mummer-3.23+dfsg/scripts' +/usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 delta.cc -c -o delta.o make[4]: Entering directory '/build/mummer-3.23+dfsg/src/kurtz/libbasedir' /usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cleanMUMcand.o cleanMUMcand.c -make[3]: Entering directory '/build/mummer-3.23+dfsg/src/tigr' -/usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 tigrinc.cc -c -o tigrinc.o cp -a ../debian/sh-replacement-scripts/exact-tandems /build/mummer-3.23+dfsg/debian/tmp/usr/bin chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/exact-tandems -/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ +/usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ mapview.pl > /build/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview -/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ +/usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ mummerplot.pl > /build/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot -/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ +/usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ nucmer.pl > /build/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer -/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ +/usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ @@ -752,16 +824,16 @@ chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer1 cp -a ../debian/sh-replacement-scripts/run-mummer3 /build/mummer-3.23+dfsg/debian/tmp/usr/bin chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer3 -/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ +/usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ nucmer2xfig.pl > /build/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig -/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ +/usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ dnadiff.pl > /build/mummer-3.23+dfsg/debian/tmp/usr/bin/dnadiff chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/dnadiff make[3]: Leaving directory '/build/mummer-3.23+dfsg/scripts' -/usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 delta.cc -c -o delta.o +/usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 sw_align.cc -c -o sw_align.o /usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o clock.o clock.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mapfile.o mapfile.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multiseq.o multiseq.c @@ -792,20 +864,22 @@ cd streesrc; make libstree.a make[4]: Entering directory '/build/mummer-3.23+dfsg/src/kurtz/streesrc' /usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o construct.o construct.c -/usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 sw_align.cc -c -o sw_align.o -/usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o access.o access.c -/usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o scanpref.o scanpref.c /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 translate.cc -c -o translate.o /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now prenuc.cc tigrinc.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prenuc; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prenuc +/usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now repeat-match.cc tigrinc.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match +/usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o access.o access.c +/usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now annotate.cc tigrinc.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate +/usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o scanpref.o scanpref.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o linkloc.o linkloc.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o depthtab.o depthtab.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ex2leav.o ex2leav.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dfs.o dfs.c -/usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now prepro.cc tigrinc.o translate.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro +/usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now combineMUMs.cc tigrinc.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/bin/combineMUMs; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/combineMUMs /usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o overmax.o overmax.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o oversucc.o oversucc.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o addleafcount.o addleafcount.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o iterator.o iterator.c +/usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now gaps.cc tigrinc.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/bin/gaps; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/gaps ar sruv libstree.a construct.o access.o scanpref.o linkloc.o depthtab.o ex2leav.o dfs.o overmax.o oversucc.o addleafcount.o iterator.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libstree.a @@ -825,17 +899,6 @@ make[4]: Entering directory '/build/mummer-3.23+dfsg/src/kurtz/mm3src' /usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmat3.o maxmat3.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmatopt.o maxmatopt.c -/usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now repeat-match.cc tigrinc.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match -/usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmatinp.o maxmatinp.c -/usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmumcand.o findmumcand.c -/usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmaxmat.o findmaxmat.c -/usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procmaxmat.o procmaxmat.c -/usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now annotate.cc tigrinc.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate -/usr/bin/gcc -Wl,-z,relro -Wl,-z,now maxmat3.o maxmatopt.o maxmatinp.o findmumcand.o findmaxmat.o procmaxmat.o ../streesrc/libstree.a ../libbasedir/libbase.a \ --o /build/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer -make[4]: Leaving directory '/build/mummer-3.23+dfsg/src/kurtz/mm3src' -make[3]: Leaving directory '/build/mummer-3.23+dfsg/src/kurtz' -/usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now combineMUMs.cc tigrinc.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/bin/combineMUMs; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/combineMUMs combineMUMs.cc:26:38: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 26 | #define DEFAULT_ERROR_FILE_NAME "witherrors.gaps" | ^~~~~~~~~~~~~~~~~ @@ -848,13 +911,19 @@ combineMUMs.cc:145:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 145 | char * Ref_Suffix = "Ref"; | ^~~~~ -/usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta-filter.cc tigrinc.o delta.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/bin/delta-filter; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/delta-filter combineMUMs.cc: In function 'int Read_String(FILE*, char**, long int*, char*)': combineMUMs.cc:1481:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1481 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ -/usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now gaps.cc tigrinc.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/bin/gaps; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/gaps +/usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmatinp.o maxmatinp.c +/usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmumcand.o findmumcand.c +/usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmaxmat.o findmaxmat.c +/usr/bin/gcc -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procmaxmat.o procmaxmat.c /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now mgaps.cc tigrinc.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/bin/mgaps; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/mgaps +/usr/bin/gcc -Wl,-z,relro -Wl,-z,now maxmat3.o maxmatopt.o maxmatinp.o findmumcand.o findmaxmat.o procmaxmat.o ../streesrc/libstree.a ../libbasedir/libbase.a \ +-o /build/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer +make[4]: Leaving directory '/build/mummer-3.23+dfsg/src/kurtz/mm3src' +make[3]: Leaving directory '/build/mummer-3.23+dfsg/src/kurtz' /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now postnuc.cc tigrinc.o sw_align.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postnuc; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postnuc mgaps.cc: In function 'int Process_Cluster(Match_t*, int, char*)': mgaps.cc:533:20: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] @@ -865,9 +934,9 @@ 620 | label = "#\n"; | ^~~~~ /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now postpro.cc tigrinc.o sw_align.o translate.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postpro; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postpro +/usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now prepro.cc tigrinc.o translate.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-aligns.cc tigrinc.o translate.o delta.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/bin/show-aligns; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/show-aligns /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-coords.cc tigrinc.o delta.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/bin/show-coords; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/show-coords -/usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-tiling.cc tigrinc.o delta.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/bin/show-tiling; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/show-tiling show-coords.cc: In function 'void printBtab(std::vector)': show-coords.cc:799:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 799 | type = "NUCMER"; @@ -878,6 +947,7 @@ show-coords.cc:803:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 803 | type = "NULL"; | ^~~~~~ +/usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-tiling.cc tigrinc.o delta.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/bin/show-tiling; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/show-tiling /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-snps.cc tigrinc.o translate.o delta.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/bin/show-snps; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/show-snps /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-diff.cc tigrinc.o delta.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/bin/show-diff; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/show-diff /usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta2blocks.cc tigrinc.o translate.o delta.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2blocks; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2blocks @@ -1034,6 +1104,7 @@ | | | | | char (*)[(Screen_Width + 1)] | char* +/usr/bin/g++ -g -O2 -fdebug-prefix-map=/build/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta-filter.cc tigrinc.o delta.o -o /build/mummer-3.23+dfsg/debian/tmp/usr/bin/delta-filter; chmod 755 /build/mummer-3.23+dfsg/debian/tmp/usr/bin/delta-filter make[3]: Leaving directory '/build/mummer-3.23+dfsg/src/tigr' make[2]: Leaving directory '/build/mummer-3.23+dfsg' /usr/bin/make -C docs @@ -1217,7 +1288,7 @@ make[2]: Leaving directory '/build/mummer-3.23+dfsg/docs' make[1]: Leaving directory '/build/mummer-3.23+dfsg' dh_auto_test - make -j3 check + make -j4 check make[1]: Entering directory '/build/mummer-3.23+dfsg' check complete make[1]: Leaving directory '/build/mummer-3.23+dfsg' @@ -1249,22 +1320,22 @@ dh_strip -a dh_makeshlibs -a dh_shlibdeps -a -dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-diff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/mummer/usr/bin/delta-filter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/mummer/usr/bin/delta2maf contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-coords contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-snps contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-aligns contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/mummer/usr/bin/mummer-annotate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-diff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/mummer/usr/bin/delta2blocks contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/mummer/usr/bin/mummer-annotate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-snps contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-tiling contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-coords contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/mummer/usr/bin/delta2maf contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-aligns contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mummer' in '../mummer_3.23+dfsg-7_armhf.deb'. -dpkg-deb: building package 'mummer-doc' in '../mummer-doc_3.23+dfsg-7_all.deb'. dpkg-deb: building package 'mummer-dbgsym' in '../mummer-dbgsym_3.23+dfsg-7_armhf.deb'. +dpkg-deb: building package 'mummer-doc' in '../mummer-doc_3.23+dfsg-7_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../mummer_3.23+dfsg-7_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1272,12 +1343,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/11808/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/11808/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4968 and its subdirectories -I: Current time: Mon Jul 12 06:02:43 -12 2021 -I: pbuilder-time-stamp: 1626112963 +I: removing directory /srv/workspace/pbuilder/11808 and its subdirectories +I: Current time: Tue Jul 13 08:08:25 +14 2021 +I: pbuilder-time-stamp: 1626113305