Diff of the two buildlogs: -- --- b1/build.log 2021-06-18 04:04:42.846574952 +0000 +++ b2/build.log 2021-06-18 04:05:57.083786057 +0000 @@ -1,9 +1,6 @@ -W: cgroups are not available on the host, not using them. -unshare: unshare failed: Cannot allocate memory -W: pbuilder: unshare CLONE_NEWNET not available -I: pbuilder: network access is available during build! -I: Current time: Thu Jun 17 15:56:35 -12 2021 -I: pbuilder-time-stamp: 1623988595 +I: pbuilder: network access will be disabled during build +I: Current time: Fri Jul 22 00:27:45 +14 2022 +I: pbuilder-time-stamp: 1658399265 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -20,8 +17,8 @@ I: copying [./apbs_3.0.0+dfsg1-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.QbU6AHeS/trustedkeys.kbx': General error -gpgv: Signature made Wed Jul 22 22:20:29 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.SsTnqP0h/trustedkeys.kbx': General error +gpgv: Signature made Fri Jul 24 00:20:29 2020 +14 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./apbs_3.0.0+dfsg1-3.dsc @@ -38,136 +35,171 @@ dpkg-source: info: applying link_libapbs_routines.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/23123/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/26953/tmp/hooks/D01_modify_environment starting +debug: Running on ionos16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/26953/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/26953/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='23123' - PS1='# ' - PS2='> ' + INVOCATION_ID=6304009f3a8f4879978aec91d8059cc6 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=26953 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.6ziVMcO4yc/pbuilderrc_Lkpz --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.6ziVMcO4yc/b1 --logfile b1/build.log apbs_3.0.0+dfsg1-3.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/sbin/chroot' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.6ziVMcO4yc/pbuilderrc_YoJM --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.6ziVMcO4yc/b2 --logfile b2/build.log --extrapackages usrmerge apbs_3.0.0+dfsg1-3.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos2-i386 4.19.0-16-686-pae #1 SMP Debian 4.19.181-1 (2021-03-19) i686 GNU/Linux + Linux i-capture-the-hostname 4.19.0-16-amd64 #1 SMP Debian 4.19.181-1 (2021-03-19) x86_64 GNU/Linux I: ls -l /bin - total 5792 - -rwxr-xr-x 1 root root 1367848 Feb 24 08:57 bash - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat - -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown - -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp - -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash - -rwxr-xr-x 1 root root 124904 Sep 22 2020 date - -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd - -rwxr-xr-x 1 root root 100752 Sep 22 2020 df - -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir - -rwxr-xr-x 1 root root 83644 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 34664 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 71928 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 30112 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 100952 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln - -rwxr-xr-x 1 root root 55572 Feb 7 2020 login - -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls - -rwxr-xr-x 1 root root 153124 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 58920 Feb 7 02:38 more - -rwsr-xr-x 1 root root 50720 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 13856 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Feb 24 08:57 rbash -> bash - -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm - -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jun 15 21:25 sh -> dash - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty - -rwsr-xr-x 1 root root 79396 Feb 7 02:38 su - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync - -rwxr-xr-x 1 root root 602584 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch - -rwxr-xr-x 1 root root 34664 Sep 22 2020 true - -rwxr-xr-x 1 root root 17768 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 63024 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/23123/tmp/hooks/D02_print_environment finished + total 5776 + -rwxr-xr-x 1 root root 1367848 Feb 25 2021 bash + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat + -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown + -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp + -rwxr-xr-x 1 root root 128724 Dec 11 2020 dash + -rwxr-xr-x 1 root root 124904 Sep 23 2020 date + -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd + -rwxr-xr-x 1 root root 100752 Sep 23 2020 df + -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir + -rwxr-xr-x 1 root root 83644 Feb 8 2021 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 34664 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 71928 Feb 8 2021 findmnt + -rwsr-xr-x 1 root root 30112 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 100952 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln + -rwxr-xr-x 1 root root 55572 Feb 8 2020 login + -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls + -rwxr-xr-x 1 root root 153124 Feb 8 2021 lsblk + -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 58920 Feb 8 2021 more + -rwsr-xr-x 1 root root 50720 Feb 8 2021 mount + -rwxr-xr-x 1 root root 13856 Feb 8 2021 mountpoint + -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Feb 25 2021 rbash -> bash + -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm + -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 22 00:27 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 20 05:46 sh.distrib -> dash + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty + -rwsr-xr-x 1 root root 79396 Feb 8 2021 su + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync + -rwxr-xr-x 1 root root 602584 Feb 17 2021 tar + -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch + -rwxr-xr-x 1 root root 34664 Sep 23 2020 true + -rwxr-xr-x 1 root root 17768 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Feb 8 2021 umount + -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 63024 Feb 8 2021 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/26953/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -350,7 +382,7 @@ Get: 127 http://deb.debian.org/debian bullseye/main i386 python3-setuptools all 52.0.0-3 [441 kB] Get: 128 http://deb.debian.org/debian bullseye/main i386 swig4.0 i386 4.0.2-1 [1443 kB] Get: 129 http://deb.debian.org/debian bullseye/main i386 swig all 4.0.2-1 [330 kB] -Fetched 68.7 MB in 25s (2796 kB/s) +Fetched 68.7 MB in 1s (90.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) @@ -891,9 +923,41 @@ Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). -0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main i386 libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main i386 libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main i386 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (4948 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30470 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/apbs-3.0.0+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/apbs-3.0.0+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package apbs dpkg-buildpackage: info: source version 3.0.0+dfsg1-3 dpkg-buildpackage: info: source distribution unstable @@ -1037,21 +1101,21 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/apbs-3.0.0+dfsg1' dh_auto_build --sourcedir=apbs - cd obj-i686-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-i686-linux-gnu && make -j18 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' /usr/bin/cmake -S/build/apbs-3.0.0+dfsg1/apbs -B/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/CMakeFiles /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/depend -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/src/pmgc /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --color= make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/depend make -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/src/generic /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --color= +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/src/pmgc /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/python /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/apbslib_swig_compilation.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/src/generic /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --color= Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc/CMakeFiles/apbs_pmgc.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc/CMakeFiles/apbs_pmgc.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic/CMakeFiles/apbs_generic.dir/depend.internal". @@ -1061,72 +1125,70 @@ Scanning dependencies of target apbslib_swig_compilation make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/build +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' Scanning dependencies of target apbs_generic make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -Scanning dependencies of target apbs_pmgc [ 1%] Swig compile apbslib.i for python -[ 2%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python && /usr/bin/cmake -E make_directory /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/_apbslib.dir -make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build +[ 2%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o +[ 3%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o +[ 4%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/nosh.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/nosh.c -[ 3%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/mgparm.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/mgparm.c -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -[ 4%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o +[ 5%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o +[ 6%] Building C object src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o +[ 8%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o +[ 9%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/femparm.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/femparm.c -[ 5%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbamparm.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/pbamparm.c -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python && /usr/bin/cmake -E touch /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON.stamp -[ 8%] Building C object src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o -[ 8%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o -[ 9%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o -[ 10%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbsamparm.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/pbsamparm.c -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/buildBd.c -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbeparm.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/pbeparm.c -[ 11%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/buildAd.c -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python && /usr/bin/cmake -E env SWIG_LIB=/usr/share/swig4.0 /usr/bin/swig4.0 -python -outdir /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python -interface _apbslib -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -I/usr/include/python3.9 -I/build/apbs-3.0.0+dfsg1/apbs/tools/python -o /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c /build/apbs-3.0.0+dfsg1/apbs/tools/python/apbslib.i +[ 10%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbamparm.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/pbamparm.c +[ 11%] Building C object src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o +[ 12%] Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/bemparm.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/bemparm.c -[ 12%] Building C object src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/geoflowparm.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/geoflowparm.c -[ 13%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/apolparm.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/apolparm.c -[ 15%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildGd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/buildGd.c -[ 16%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o +[ 13%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/geoflowparm.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/geoflowparm.c +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python && /usr/bin/cmake -E touch /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON.stamp +[ 15%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vacc.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/vacc.c -[ 17%] Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o +[ 16%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbeparm.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/pbeparm.c +[ 17%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o +[ 18%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/valist.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/valist.c -[ 18%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildPd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/buildPd.c -[ 19%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vatom.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/vatom.c -make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -[ 20%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o +[ 19%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vpbe.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/vpbe.c -[ 20%] Built target apbslib_swig_compilation -[ 22%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/cgd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/cgd.c -[ 23%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vcap.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/vcap.c -[ 24%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vclist.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/vclist.c -[ 25%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vstring.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/vstring.c -[ 26%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/gsd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/gsd.c -[ 27%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python && /usr/bin/cmake -E env SWIG_LIB=/usr/share/swig4.0 /usr/bin/swig4.0 -python -outdir /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python -interface _apbslib -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -I/usr/include/python3.9 -I/build/apbs-3.0.0+dfsg1/apbs/tools/python -o /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c /build/apbs-3.0.0+dfsg1/apbs/tools/python/apbslib.i +Scanning dependencies of target apbs_pmgc +make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +[ 20%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/buildAd.c +[ 22%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vparam.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/vparam.c -[ 29%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o +[ 23%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vgreen.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/vgreen.c +[ 24%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/buildBd.c +[ 25%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildGd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/buildGd.c +[ 26%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildPd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/buildPd.c +[ 27%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/cgd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/cgd.c +[ 29%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/gsd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/gsd.c [ 30%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o -[ 31%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/matvecd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/matvecd.c +[ 31%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/mgcsd.c [ 32%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/mgdrvd.c @@ -1135,22 +1197,24 @@ [ 34%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mikpckd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/mikpckd.c [ 36%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o +[ 37%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o +[ 38%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/mlinpckd.c -[ 37%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mypdec.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/mypdec.c -[ 38%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/newtond.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/newtond.c -[ 39%] Linking C shared library ../../lib/libapbs_generic.so -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs_generic.dir/link.txt --verbose=1 -/usr/bin/cc -fPIC -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libapbs_generic.so.3 -o ../../lib/libapbs_generic.so.3 CMakeFiles/apbs_generic.dir/nosh.c.o CMakeFiles/apbs_generic.dir/mgparm.c.o CMakeFiles/apbs_generic.dir/femparm.c.o CMakeFiles/apbs_generic.dir/pbamparm.c.o CMakeFiles/apbs_generic.dir/pbsamparm.c.o CMakeFiles/apbs_generic.dir/pbeparm.c.o CMakeFiles/apbs_generic.dir/bemparm.c.o CMakeFiles/apbs_generic.dir/geoflowparm.c.o CMakeFiles/apbs_generic.dir/apolparm.c.o CMakeFiles/apbs_generic.dir/vacc.c.o CMakeFiles/apbs_generic.dir/valist.c.o CMakeFiles/apbs_generic.dir/vatom.c.o CMakeFiles/apbs_generic.dir/vpbe.c.o CMakeFiles/apbs_generic.dir/vcap.c.o CMakeFiles/apbs_generic.dir/vclist.c.o CMakeFiles/apbs_generic.dir/vstring.c.o CMakeFiles/apbs_generic.dir/vparam.c.o CMakeFiles/apbs_generic.dir/vgreen.c.o -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -[ 40%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o +[ 39%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/newdrvd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/newdrvd.c -[ 41%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o +[ 40%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/powerd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/powerd.c -[ 43%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o +[ 41%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/smoothd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/smoothd.c -[ 44%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o +make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +[ 41%] Built target apbslib_swig_compilation +[ 43%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgfasd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/mgfasd.c +[ 44%] Linking C shared library ../../lib/libapbs_generic.so +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs_generic.dir/link.txt --verbose=1 +/usr/bin/cc -fPIC -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libapbs_generic.so.3 -o ../../lib/libapbs_generic.so.3 CMakeFiles/apbs_generic.dir/nosh.c.o CMakeFiles/apbs_generic.dir/mgparm.c.o CMakeFiles/apbs_generic.dir/femparm.c.o CMakeFiles/apbs_generic.dir/pbamparm.c.o CMakeFiles/apbs_generic.dir/pbsamparm.c.o CMakeFiles/apbs_generic.dir/pbeparm.c.o CMakeFiles/apbs_generic.dir/bemparm.c.o CMakeFiles/apbs_generic.dir/geoflowparm.c.o CMakeFiles/apbs_generic.dir/apolparm.c.o CMakeFiles/apbs_generic.dir/vacc.c.o CMakeFiles/apbs_generic.dir/valist.c.o CMakeFiles/apbs_generic.dir/vatom.c.o CMakeFiles/apbs_generic.dir/vpbe.c.o CMakeFiles/apbs_generic.dir/vcap.c.o CMakeFiles/apbs_generic.dir/vclist.c.o CMakeFiles/apbs_generic.dir/vstring.c.o CMakeFiles/apbs_generic.dir/vparam.c.o CMakeFiles/apbs_generic.dir/vgreen.c.o -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cmake -E cmake_symlink_library ../../lib/libapbs_generic.so.3 ../../lib/libapbs_generic.so.3 ../../lib/libapbs_generic.so make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [ 44%] Built target apbs_generic @@ -1169,14 +1233,14 @@ make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/build make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -[ 46%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vmgrid.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/mg/vmgrid.c -[ 47%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vgrid.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/mg/vgrid.c +[ 46%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o +[ 47%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o [ 48%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vopot.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/mg/vopot.c -[ 51%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vgrid.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/mg/vgrid.c +[ 50%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vmgrid.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/mg/vmgrid.c [ 51%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vopot.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/mg/vopot.c cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vpmg.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/mg/vpmg.c cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vpmgp.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/mg/vpmgp.c In file included from /usr/include/maloc/maloc.h:38, @@ -1208,112 +1272,200 @@ make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/depend make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/depend +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/src /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake --color= make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/depend +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake --color= make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/depend make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/depend -make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/depend -make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/depend -make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/depend make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake --color= +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/smooth.dir/DependInfo.cmake --color= +make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/depend make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake --color= +make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/depend make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mgmesh.dir/DependInfo.cmake --color= -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/value.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake --color= +make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/depend +make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/depend make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/multivalue.dir/DependInfo.cmake --color= +make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/depend make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/DependInfo.cmake --color= +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/value.dir/DependInfo.cmake --color= +make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/depend make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/smooth.dir/DependInfo.cmake --color= +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/similarity.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/similarity.dir/DependInfo.cmake --color= +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake --color= +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/tensor2dx.dir/DependInfo.cmake --color= +make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/depend +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake --color= +make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/depend +make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/depend +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake --color= +make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/depend +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake --color= +make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/depend +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/manip /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/born.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/manip /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake --color= +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/apbs_routines.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/apbs_routines.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/del2dx.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/del2dx.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/smooth.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/smooth.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/smooth.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dxmath.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/multivalue.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/multivalue.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/multivalue.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/similarity.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/similarity.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/similarity.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/value.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/value.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/value.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mergedx2.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mergedx2.dir/depend.internal". -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/multivalue.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/multivalue.dir/depend.internal". -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/multivalue.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mgmesh.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mgmesh.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mgmesh.dir/depend.internal". -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/src /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake --color= -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dxmath.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/tensor2dx.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/tensor2dx.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/tensor2dx.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/benchmark.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/benchmark.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2mol.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2mol.dir/depend.internal". +Scanning dependencies of target uhbd_asc2bin +Scanning dependencies of target del2dx +make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build +Scanning dependencies of target smooth Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dxmath.dir/depend.internal". -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/smooth.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/smooth.dir/depend.internal". -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/smooth.dir/depend.internal". -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend.internal". -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend.internal". Scanning dependencies of target multivalue -Scanning dependencies of target del2dx +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +Scanning dependencies of target value +Scanning dependencies of target similarity +Scanning dependencies of target apbs_routines +make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/build -Scanning dependencies of target smooth -Scanning dependencies of target mergedx2 make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/build -Scanning dependencies of target uhbd_asc2bin make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -Scanning dependencies of target dxmath make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -Scanning dependencies of target value -make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/analysis.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/analysis.dir/depend.internal". +Scanning dependencies of target tensor2dx +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mergedx.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mergedx.dir/depend.internal". +Scanning dependencies of target benchmark make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/similarity.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/similarity.dir/depend.internal". -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/similarity.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/coulomb.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/coulomb.dir/depend.internal". +make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/build +make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +Scanning dependencies of target dx2mol make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/build make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/build +Scanning dependencies of target mergedx2 Scanning dependencies of target mgmesh -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/build +make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/build +make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/build +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/born.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/born.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/born.dir/depend.internal". +make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/build make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/apbs_routines.dir/depend.internal". -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/apbs_routines.dir/depend.internal". make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/build +Scanning dependencies of target dxmath make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -Scanning dependencies of target similarity make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/build make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -[ 53%] Building C object tools/mesh/CMakeFiles/multivalue.dir/multivalue.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/multivalue.dir/multivalue.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/multivalue.c make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/build -make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/build -[ 54%] Building C object tools/mesh/CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -[ 55%] Building C object tools/mesh/CMakeFiles/del2dx.dir/del2dx.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/del2dx.dir/del2dx.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/del2dx.c +make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/build make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -Scanning dependencies of target apbs_routines +Scanning dependencies of target coulomb +make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/build +Scanning dependencies of target mergedx make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/build make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/build -[ 56%] Building C object tools/mesh/CMakeFiles/smooth.dir/smooth.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/smooth.dir/smooth.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/smooth.c +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2uhbd.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2uhbd.dir/depend.internal". +make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/build +make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +Scanning dependencies of target analysis +make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/build make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -[ 58%] Building C object tools/mesh/CMakeFiles/dxmath.dir/dxmath.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/dxmath.dir/dxmath.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/dxmath.c -[ 59%] Building C object tools/mesh/CMakeFiles/mgmesh.dir/mgmesh.c.o +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/build +make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/build +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +[ 53%] Building C object tools/mesh/CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o +Scanning dependencies of target born +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +Scanning dependencies of target dx2uhbd +make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +[ 54%] Building C object tools/mesh/CMakeFiles/multivalue.dir/multivalue.c.o +[ 55%] Building C object src/CMakeFiles/apbs_routines.dir/routines.c.o +make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/build +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/build +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/multivalue.dir/multivalue.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/multivalue.c +[ 56%] Building C object tools/mesh/CMakeFiles/del2dx.dir/del2dx.c.o +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src && /usr/bin/cc -Dapbs_routines_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_routines.dir/routines.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/routines.c +[ 59%] Building C object tools/mesh/CMakeFiles/value.dir/value.c.o +[ 59%] Building C object tools/mesh/CMakeFiles/smooth.dir/smooth.c.o +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/del2dx.dir/del2dx.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/del2dx.c +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/value.dir/value.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/value.c +[ 60%] Building C object tools/mesh/CMakeFiles/mgmesh.dir/mgmesh.c.o +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/smooth.dir/smooth.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/smooth.c +[ 61%] Building C object tools/mesh/CMakeFiles/dxmath.dir/dxmath.c.o +[ 62%] Building C object tools/mesh/CMakeFiles/similarity.dir/similarity.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/mgmesh.dir/mgmesh.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/mgmesh.c -[ 60%] Building C object tools/mesh/CMakeFiles/similarity.dir/similarity.c.o -[ 61%] Building C object tools/mesh/CMakeFiles/mergedx2.dir/mergedx2.c.o +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/dxmath.dir/dxmath.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/dxmath.c +[ 63%] Building C object tools/mesh/CMakeFiles/dx2mol.dir/dx2mol.c.o +[ 65%] Building C object tools/manip/CMakeFiles/coulomb.dir/coulomb.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/similarity.dir/similarity.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/similarity.c -[ 62%] Building C object tools/mesh/CMakeFiles/value.dir/value.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/value.dir/value.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/value.c +[ 67%] Building C object tools/mesh/CMakeFiles/tensor2dx.dir/tensor2dx.c.o +[ 67%] Building C object tools/mesh/CMakeFiles/mergedx2.dir/mergedx2.c.o +[ 69%] Building C object tools/mesh/CMakeFiles/benchmark.dir/benchmark.c.o +[ 69%] Building C object tools/mesh/CMakeFiles/mergedx.dir/mergedx.c.o +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/dx2mol.dir/dx2mol.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/dx2mol.c cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/mergedx2.dir/mergedx2.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/mergedx2.c -[ 63%] Building C object src/CMakeFiles/apbs_routines.dir/routines.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src && /usr/bin/cc -Dapbs_routines_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_routines.dir/routines.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/routines.c +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/coulomb.dir/coulomb.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/manip/coulomb.c +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/benchmark.dir/benchmark.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/benchmark.c +[ 70%] Building C object tools/mesh/CMakeFiles/analysis.dir/analysis.c.o +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/tensor2dx.dir/tensor2dx.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/mergedx.dir/mergedx.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/mergedx.c +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/analysis.dir/analysis.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/analysis.c +[ 72%] Building C object tools/manip/CMakeFiles/born.dir/born.c.o +[ 73%] Building C object tools/mesh/CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/dx2uhbd.c +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/born.dir/born.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/manip/born.c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/del2dx.c: In function 'main': /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/del2dx.c:76:2: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 76 | fread(&igrid, 1, sizeof(int), pfile); @@ -1330,6 +1482,37 @@ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/del2dx.c:106:2: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 106 | fread(oldmid, 3, sizeof(float), pfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c: In function 'main': +/build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:97:2: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 97 | fscanf(pfile1,"%lf %lf %lf",&origin_xyz[0],&origin_xyz[1],&origin_xyz[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:98:2: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 98 | fscanf(pfile1,"%lf %lf %lf",&gspace[0],&gspace[1],&gspace[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:137:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 137 | fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:138:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 138 | fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:139:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 139 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:140:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 140 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:155:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 155 | fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:156:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 156 | fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:157:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 157 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:158:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 158 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c: In function 'main': /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:30:5: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result] 30 | scanf("%s", flnm); @@ -1418,175 +1601,91 @@ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:138:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 138 | fscanf(inFile, "%lf", RAT3(grid, i, j, k)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 65%] Linking C executable ../bin/mgmesh +[ 74%] Linking C executable ../bin/value +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/value.dir/link.txt --verbose=1 +[ 75%] Linking C executable ../bin/mgmesh cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mgmesh.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/value.dir/value.c.o -o ../bin/value ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/mgmesh.dir/mgmesh.c.o -o ../bin/mgmesh ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 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/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/uhbd_asc2bin.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -o ../bin/uhbd_asc2bin ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp +[ 80%] Linking C executable ../bin/tensor2dx +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/tensor2dx.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/del2dx.dir/del2dx.c.o -o ../bin/del2dx ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/value.dir/value.c.o -o ../bin/value ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 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../bin/smooth +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/tensor2dx.dir/tensor2dx.c.o -o ../bin/tensor2dx ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp +[ 81%] Linking C executable ../bin/uhbd_asc2bin +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/uhbd_asc2bin.dir/link.txt --verbose=1 +[ 82%] Linking C executable ../bin/dx2uhbd +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -o ../bin/uhbd_asc2bin ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dx2uhbd.dir/link.txt --verbose=1 +[ 83%] Linking C executable ../bin/benchmark +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/benchmark.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -o ../bin/dx2uhbd ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/benchmark.dir/benchmark.c.o -o ../bin/benchmark ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp +[ 84%] Linking C executable ../bin/coulomb +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip && /usr/bin/cmake -E cmake_link_script CMakeFiles/coulomb.dir/link.txt --verbose=1 +[ 86%] Linking C executable ../bin/born +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip && /usr/bin/cmake -E cmake_link_script CMakeFiles/born.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/coulomb.dir/coulomb.c.o -o ../bin/coulomb ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/born.dir/born.c.o -o ../bin/born ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp +[ 87%] Linking C executable ../bin/smooth cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/smooth.dir/link.txt --verbose=1 +[ 88%] Linking C executable ../bin/analysis +[ 89%] Linking C executable ../bin/dxmath +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysis.dir/link.txt --verbose=1 +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dxmath.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/dxmath.dir/dxmath.c.o -o ../bin/dxmath ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/analysis.dir/analysis.c.o -o ../bin/analysis ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/smooth.dir/smooth.c.o -o ../bin/smooth ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -[ 73%] Linking C executable ../bin/similarity -[ 73%] Built target value -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/similarity.dir/link.txt --verbose=1 -make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/depend -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake --color= +[ 89%] Built target mgmesh +[ 89%] Built target dx2mol +[ 89%] Built target value make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -[ 73%] Built target uhbd_asc2bin -[ 74%] Linking C executable ../bin/mergedx2 -[ 74%] Built target del2dx -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mergedx2.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/similarity.dir/similarity.c.o -o ../bin/similarity ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/depend -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/analysis.dir/depend.internal". -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/analysis.dir/depend.internal". -[ 74%] Built target multivalue -make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/depend -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/tensor2dx.dir/DependInfo.cmake --color= -make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/depend +[ 89%] Built target del2dx +[ 89%] Built target tensor2dx make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake --color= -Scanning dependencies of target analysis -[ 74%] Built target mgmesh -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/mergedx2.dir/mergedx2.c.o -o ../bin/mergedx2 ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/depend make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +[ 89%] Built target multivalue make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/tensor2dx.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/tensor2dx.dir/depend.internal". -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/tensor2dx.dir/depend.internal". -[ 74%] Built target smooth -make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/build -Scanning dependencies of target tensor2dx +[ 89%] Built target uhbd_asc2bin make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/build -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/depend -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/benchmark.dir/depend.internal". -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/benchmark.dir/depend.internal". -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2mol.dir/depend.internal". -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2mol.dir/depend.internal". -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake --color= -[ 75%] Building C object tools/mesh/CMakeFiles/tensor2dx.dir/tensor2dx.c.o -[ 75%] Built target dxmath -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/tensor2dx.dir/tensor2dx.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c -Scanning dependencies of target benchmark +[ 89%] Built target dx2uhbd +[ 89%] Built target benchmark +[ 90%] Linking C executable ../bin/similarity +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/similarity.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mergedx.dir/depend.internal". -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mergedx.dir/depend.internal". -make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/build -Scanning dependencies of target dx2mol +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/similarity.dir/similarity.c.o -o ../bin/similarity ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/build -[ 76%] Building C object tools/mesh/CMakeFiles/analysis.dir/analysis.c.o -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2uhbd.dir/depend.internal". -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2uhbd.dir/depend.internal". -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/analysis.dir/analysis.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/analysis.c -Scanning dependencies of target mergedx -make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/depend make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/build -Scanning dependencies of target dx2uhbd make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/build -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +[ 90%] Built target smooth +[ 90%] Built target coulomb +[ 90%] Built target born +[ 90%] Built target analysis make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -[ 77%] Building C object tools/mesh/CMakeFiles/benchmark.dir/benchmark.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/benchmark.dir/benchmark.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/benchmark.c -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/manip /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/born.dir/DependInfo.cmake --color= -[ 79%] Building C object tools/mesh/CMakeFiles/dx2mol.dir/dx2mol.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/dx2mol.dir/dx2mol.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/dx2mol.c -[ 80%] Building C object tools/mesh/CMakeFiles/mergedx.dir/mergedx.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/mergedx.dir/mergedx.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/mergedx.c -[ 81%] Building C object tools/mesh/CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/dx2uhbd.c -[ 79%] Built target similarity -make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/depend -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/manip /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake --color= -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/born.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/born.dir/depend.internal". -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/born.dir/depend.internal". -Scanning dependencies of target born +[ 90%] Built target dxmath +[ 91%] Linking C executable ../bin/mergedx +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mergedx.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/mergedx.dir/mergedx.c.o -o ../bin/mergedx ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/build -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/coulomb.dir/depend.internal". -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/coulomb.dir/depend.internal". +[ 91%] Built target similarity make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -Scanning dependencies of target coulomb +[ 93%] Linking C executable ../bin/mergedx2 +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mergedx2.dir/link.txt --verbose=1 +[ 93%] Built target mergedx +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/mergedx2.dir/mergedx2.c.o -o ../bin/mergedx2 ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/build -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -[ 82%] Building C object tools/manip/CMakeFiles/born.dir/born.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/born.dir/born.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/manip/born.c -[ 82%] Built target mergedx2 -[ 83%] Building C object tools/manip/CMakeFiles/coulomb.dir/coulomb.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/coulomb.dir/coulomb.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/manip/coulomb.c -/build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c: In function 'main': -/build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:97:2: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 97 | fscanf(pfile1,"%lf %lf %lf",&origin_xyz[0],&origin_xyz[1],&origin_xyz[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:98:2: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 98 | fscanf(pfile1,"%lf %lf %lf",&gspace[0],&gspace[1],&gspace[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:137:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 137 | fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:138:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 138 | fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:139:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 139 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:140:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 140 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:155:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 155 | fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:156:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 156 | fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:157:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 157 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:158:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 158 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 84%] Linking C executable ../bin/tensor2dx -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/tensor2dx.dir/link.txt --verbose=1 -[ 86%] Linking C executable ../bin/dx2mol -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dx2mol.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/tensor2dx.dir/tensor2dx.c.o -o ../bin/tensor2dx ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp +[ 93%] Built target mergedx2 /build/apbs-3.0.0+dfsg1/apbs/src/routines.c: In function 'writematMG': /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:1840:30: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 1840 | sprintf(outpath, "%s.%s", writematstem, "mat"); @@ -1602,33 +1701,6 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/dx2mol.dir/dx2mol.c.o -o ../bin/dx2mol ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -[ 88%] Linking C executable ../bin/benchmark -[ 87%] Linking C executable ../bin/dx2uhbd -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dx2uhbd.dir/link.txt --verbose=1 -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/benchmark.dir/link.txt --verbose=1 -[ 89%] Linking C executable ../bin/analysis -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysis.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/benchmark.dir/benchmark.c.o -o ../bin/benchmark ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -o ../bin/dx2uhbd ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/analysis.dir/analysis.c.o -o ../bin/analysis ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -[ 90%] Linking C executable ../bin/born -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip && /usr/bin/cmake -E cmake_link_script CMakeFiles/born.dir/link.txt --verbose=1 -[ 91%] Linking C executable ../bin/coulomb -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/born.dir/born.c.o -o ../bin/born ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip && /usr/bin/cmake -E cmake_link_script CMakeFiles/coulomb.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/coulomb.dir/coulomb.c.o -o ../bin/coulomb ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -[ 91%] Built target tensor2dx -make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -[ 91%] Built target benchmark -[ 91%] Built target dx2mol -make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -[ 91%] Built target born /build/apbs-3.0.0+dfsg1/apbs/src/routines.c: In function 'writedataMG': /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:2676:30: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2676 | sprintf(outpath, "%s.%s", writestem, "dxbin"); @@ -1728,14 +1800,6 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 91%] Built target analysis -[ 91%] Built target dx2uhbd -[ 91%] Built target coulomb -[ 93%] Linking C executable ../bin/mergedx -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mergedx.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/mergedx.dir/mergedx.c.o -o ../bin/mergedx ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp -make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -[ 93%] Built target mergedx [ 94%] Linking C shared library ../lib/libapbs_routines.so cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs_routines.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libapbs_routines.so.3 -o ../lib/libapbs_routines.so.3 CMakeFiles/apbs_routines.dir/routines.c.o -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp ../lib/libapbs_mg.so.3 ../lib/libapbs_generic.so.3 ../lib/libapbs_pmgc.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp @@ -1748,18 +1812,24 @@ cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/src /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/apbs.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/python /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/DependInfo.cmake --color= -Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/apbs.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/apbs.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/apbs.dir/depend.internal". +Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/depend.internal". Scanning dependencies of target apbs make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/build make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +Scanning dependencies of target _apbslib +make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' +make -f tools/python/CMakeFiles/_apbslib.dir/build.make tools/python/CMakeFiles/_apbslib.dir/build +make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [ 95%] Building C object src/CMakeFiles/apbs.dir/main.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/apbs.dir/main.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/main.c [ 96%] Building C object src/CMakeFiles/apbs.dir/routines.c.o +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/apbs.dir/main.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/main.c cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/apbs.dir/routines.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/routines.c +[ 97%] Building C object tools/python/CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o +cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python && /usr/bin/cc -D_apbslib_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -I/usr/include/python3.9 -I/build/apbs-3.0.0+dfsg1/apbs/tools/python -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o -c /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c /build/apbs-3.0.0+dfsg1/apbs/src/main.c: In function 'main': /build/apbs-3.0.0+dfsg1/apbs/src/main.c:288:64: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 288 | Vnm_tprint( 1, "This executable compiled on %s at %s\n\n", __DATE__, __TIME__); @@ -1767,12 +1837,6 @@ /build/apbs-3.0.0+dfsg1/apbs/src/main.c:288:74: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 288 | Vnm_tprint( 1, "This executable compiled on %s at %s\n\n", __DATE__, __TIME__); | ^~~~~~~~ -Scanning dependencies of target _apbslib -make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -make -f tools/python/CMakeFiles/_apbslib.dir/build.make tools/python/CMakeFiles/_apbslib.dir/build -make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' -[ 97%] Building C object tools/python/CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o -cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python && /usr/bin/cc -D_apbslib_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -I/usr/include/python3.9 -I/build/apbs-3.0.0+dfsg1/apbs/tools/python -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o -c /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c /build/apbs-3.0.0+dfsg1/apbs/src/routines.c: In function 'writematMG': /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:1840:30: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 1840 | sprintf(outpath, "%s.%s", writematstem, "mat"); @@ -1919,7 +1983,7 @@ debian/rules override_dh_auto_install make[1]: Entering directory '/build/apbs-3.0.0+dfsg1' dh_auto_install --sourcedir=apbs --destdir=/build/apbs-3.0.0+dfsg1/debian/tmp/ - cd obj-i686-linux-gnu && make -j10 install DESTDIR=/build/apbs-3.0.0\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-i686-linux-gnu && make -j18 install DESTDIR=/build/apbs-3.0.0\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' /usr/bin/cmake -S/build/apbs-3.0.0+dfsg1/apbs -B/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1930,484 +1994,484 @@ /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc --- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/ReleaseNotes.md +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/data-ontology +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/data-ontology/protege.sh +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/data-ontology/catalog-v001.xml +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/data-ontology/README.md +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/data-ontology/data-ontology.ttl -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/ChangeLog.md +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/release_procedure.md +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/ReleaseNotes.md +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/README -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/icons +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/icons/APBS_128.png -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/icons/APBS_512.png -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/icons/APBS_128_v2.png +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/icons/APBS_1024.png +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/icons/APBS_256.png +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/icons/APBS_16.png -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/icons/APBS_64.png -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/icons/APBS_32.png --- Installing: 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/build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples --- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam --- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam/README.md +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam/toy_dynamics.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam/toy_energyforce.in --- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam/1a63.pqr --- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam/neg_1.xyz -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam/neg_2.xyz --- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam/pos_1.xyz --- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam/neg_charge.pqr --- Installing: 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/build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/windows/command-line support +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/windows/command-line support/apbs-cli.bat +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/tensor2dx.c +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/value.c +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/dx2mol.c +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/similarity.c +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/mergedx2.c +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/uhbd_asc2bin.c +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/mergedx.c +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/multivalue.c +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/CMakeLists.txt +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/smooth.c +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/dx2uhbd.c +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/dxmath.c +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/del2dx.c +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/analysis.c +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/benchmark.c +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/mgmesh.c -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin --- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/smooth --- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/mergedx --- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/dxmath --- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/tensor2dx --- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/coulomb --- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/dx2mol --- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/multivalue --- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/del2dx --- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/born --- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/similarity --- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/mergedx2 -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/uhbd_asc2bin +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/benchmark +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/dx2uhbd -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/value +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/born +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/dx2mol +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/multivalue +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/dxmath -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/analysis --- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/benchmark +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/del2dx +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/tensor2dx +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/coulomb +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/mergedx -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/mgmesh --- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/dx2uhbd +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/smooth +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/mergedx2 +-- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/similarity -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libapbs_routines.so.3 -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libapbs_routines.so -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/apbs.h @@ -2504,12 +2568,12 @@ dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libapbs3/usr/lib/i386-linux-gnu/libapbs_generic.so.3 was not linked against libpthread.so.0 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx were not linked against libgomp.so.1 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx were not linked against libapbs_pmgc.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/bin/apbs was not linked against libapbs_routines.so.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd were not linked against libmpi.so.40 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd were not linked against libapbs_pmgc.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd were not linked against libstdc++.so.6 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd were not linked against libpthread.so.0 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd were not linked against libgomp.so.1 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx were not linked against libmpi.so.40 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx were not linked against libpthread.so.0 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx were not linked against libstdc++.so.6 (they use none of the library's symbols) dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libapbs-dev: substitution variable ${shlibs:Depends} used, but is not defined @@ -2519,25 +2583,28 @@ dpkg-gencontrol: warning: package python3-apbslib: substitution variable ${python3:Versions} unused, but is defined dh_md5sums dh_builddeb -dpkg-deb: building package 'libapbs3' in '../libapbs3_3.0.0+dfsg1-3_i386.deb'. -dpkg-deb: building package 'python3-apbslib-dbgsym' in '../python3-apbslib-dbgsym_3.0.0+dfsg1-3_i386.deb'. -dpkg-deb: building package 'libapbs3-dbgsym' in '../libapbs3-dbgsym_3.0.0+dfsg1-3_i386.deb'. dpkg-deb: building package 'apbs' in '../apbs_3.0.0+dfsg1-3_i386.deb'. dpkg-deb: building package 'apbs-dbgsym' in '../apbs-dbgsym_3.0.0+dfsg1-3_i386.deb'. -dpkg-deb: building package 'apbs-data' in '../apbs-data_3.0.0+dfsg1-3_all.deb'. +dpkg-deb: building package 'python3-apbslib-dbgsym' in '../python3-apbslib-dbgsym_3.0.0+dfsg1-3_i386.deb'. dpkg-deb: building package 'python3-apbslib' in '../python3-apbslib_3.0.0+dfsg1-3_i386.deb'. dpkg-deb: building package 'libapbs-dev' in '../libapbs-dev_3.0.0+dfsg1-3_i386.deb'. +dpkg-deb: building package 'libapbs3' in '../libapbs3_3.0.0+dfsg1-3_i386.deb'. +dpkg-deb: building package 'apbs-data' in '../apbs-data_3.0.0+dfsg1-3_all.deb'. +dpkg-deb: building package 'libapbs3-dbgsym' in '../libapbs3-dbgsym_3.0.0+dfsg1-3_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../apbs_3.0.0+dfsg1-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) +I: copying local configuration +I: user script /srv/workspace/pbuilder/26953/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/26953/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/23123 and its subdirectories -I: Current time: Thu Jun 17 16:04:41 -12 2021 -I: pbuilder-time-stamp: 1623989082 +I: removing directory /srv/workspace/pbuilder/26953 and its subdirectories +I: Current time: Fri Jul 22 00:28:55 +14 2022 +I: pbuilder-time-stamp: 1658399335