Diff of the two buildlogs: -- --- b1/build.log 2024-01-15 00:15:49.485068168 +0000 +++ b2/build.log 2024-01-15 00:40:12.844226650 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jan 14 12:02:53 -12 2024 -I: pbuilder-time-stamp: 1705276973 +I: Current time: Sun Feb 16 20:38:52 +14 2025 +I: pbuilder-time-stamp: 1739687932 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: copying [./gatb-core_1.4.2+dfsg-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.xONshiNk/trustedkeys.kbx': General error +gpgv: keyblock resource '/tmp/dpkg-verify-sig.Zcj3FrOR/trustedkeys.kbx': General error gpgv: Signature made Wed Dec 2 16:51:18 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" @@ -40,51 +40,82 @@ dpkg-source: info: applying use-int-as-return-of-fgetc.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/22153/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/119243/tmp/hooks/D01_modify_environment starting +debug: Running on ionos6-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 16 06:39 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/119243/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/119243/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15 ' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='b3f8ee62b5844510a76c5e4ef3f00b00' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='22153' - PS1='# ' - PS2='> ' + INVOCATION_ID=c7bd369d4b3242bd97efb6b35108c8fe + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=119243 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FcENhhE0/pbuilderrc_MK99 --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FcENhhE0/b1 --logfile b1/build.log gatb-core_1.4.2+dfsg-6.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FcENhhE0/pbuilderrc_BEqf --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FcENhhE0/b2 --logfile b2/build.log gatb-core_1.4.2+dfsg-6.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos12-i386 6.1.0-17-686-pae #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) i686 GNU/Linux + Linux i-capture-the-hostname 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Mar 27 2022 bash @@ -144,7 +175,7 @@ -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jan 7 09:27 sh -> dash + lrwxrwxrwx 1 root root 9 Feb 16 06:39 sh -> /bin/bash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Jan 20 2022 su @@ -170,7 +201,7 @@ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew -I: user script /srv/workspace/pbuilder/22153/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/119243/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -351,7 +382,7 @@ Get: 127 http://deb.debian.org/debian bullseye/main i386 libjpeg-dev i386 1:2.0.6-4 [67.8 kB] Get: 128 http://deb.debian.org/debian bullseye/main i386 libhdf5-dev i386 1.10.6+repack-4+deb11u1 [2585 kB] Get: 129 http://deb.debian.org/debian bullseye/main i386 libjsoncpp-dev i386 1.9.4-4 [25.4 kB] -Fetched 105 MB in 4s (25.6 MB/s) +Fetched 105 MB in 2s (52.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17763 files and directories currently installed.) @@ -889,7 +920,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gatb-core-1.4.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gatb-core_1.4.2+dfsg-6_source.changes +I: user script /srv/workspace/pbuilder/119243/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/119243/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gatb-core-1.4.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gatb-core_1.4.2+dfsg-6_source.changes dpkg-buildpackage: info: source package gatb-core dpkg-buildpackage: info: source version 1.4.2+dfsg-6 dpkg-buildpackage: info: source distribution unstable @@ -977,7 +1012,7 @@ debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg' dh_auto_build -a - cd obj-i686-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-i686-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core -B/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu//CMakeFiles/progress.marks @@ -993,13 +1028,13 @@ make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/thirdparty /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake --color= Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/depend.internal". +Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/CMakeFiles/gatbcore-static.dir/depend.internal". Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/depend.internal". +Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/CMakeFiles/gatbcore-static.dir/depend.internal". Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/thirdparty/CMakeFiles/thirdparty_copy.dir/depend.internal". Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/thirdparty/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/thirdparty/CMakeFiles/thirdparty_copy.dir/depend.internal". Scanning dependencies of target thirdparty_copy make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' -Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/CMakeFiles/gatbcore-static.dir/depend.internal". -Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/CMakeFiles/gatbcore-static.dir/depend.internal". make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/build make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/json @@ -1009,29 +1044,51 @@ make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' [ 0%] Built target thirdparty_copy Scanning dependencies of target gatbcore-dynamic +Scanning dependencies of target gatbcore-static make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/build -Scanning dependencies of target gatbcore-static -make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/build +make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' [ 0%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp -[ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o +make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' +[ 1%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o +[ 2%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankAlbum.cpp -[ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o +[ 2%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp -[ 2%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o +[ 2%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankAlbum.cpp +[ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o +[ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp -make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' -[ 2%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp +[ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o +[ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o +[ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp +[ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankFasta.cpp -[ 3%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -[ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o +[ 5%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankHelpers.cpp -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp -[ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankFasta.cpp +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankHelpers.cpp +[ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankRandom.cpp +[ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankSplitter.cpp +[ 6%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankRandom.cpp +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function 'bool gatb::core::bank::impl::checkMagic(FILE*)': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 54 | fread (&value, sizeof(value), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function 'virtual void gatb::core::bank::impl::BankBinary::Iterator::next()': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function 'bool gatb::core::bank::impl::checkMagic(FILE*)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 54 | fread (&value, sizeof(value), 1, file); @@ -1055,8 +1112,14 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -[ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankSplitter.cpp +[ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp +[ 8%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankSplitter.cpp +[ 8%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp +[ 8%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, @@ -1072,14 +1135,16 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -[ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp -[ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp -[ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o +[ 8%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp -[ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o +[ 9%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp +[ 9%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp +[ 9%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp +[ 10%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp: In function 'long unsigned int gatb::core::debruijn::impl::logging(std::string)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp:31:67: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=] 31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ", @@ -1101,14 +1166,37 @@ | ~~~~~~~~~~~~~ | | | u_int64_t {aka long long unsigned int} -[ 6%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankAlbum.cpp -[ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp -[ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o +[ 11%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp -[ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp: In function 'long unsigned int gatb::core::debruijn::impl::logging(std::string)': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp:31:67: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=] + 31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ", + | ~~~^ + | | + | long unsigned int + | %4llu + 32 | mem, memMaxProcess); + | ~~~ + | | + | u_int64_t {aka long long unsigned int} +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp:31:73: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=] + 31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ", + | ~~~^ + | | + | long unsigned int + | %4llu + 32 | mem, memMaxProcess); + | ~~~~~~~~~~~~~ + | | + | u_int64_t {aka long long unsigned int} +[ 11%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp +[ 12%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp +[ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp +[ 12%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] @@ -1118,14 +1206,12 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -[ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -1134,13 +1220,42 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 60 | props->add (0, "host"); - | ^~~~~~ -[ 8%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u +[ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp +[ 13%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp +[ 13%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp +[ 13%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp +[ 14%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u +[ 15%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, @@ -1155,8 +1270,21 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -[ 8%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u +[ 15%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, @@ -1172,6 +1300,73 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u +[ 16%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 60 | props->add (0, "host"); + | ^~~~~~ +[ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.hpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp:20: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u +[ 16%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, @@ -1185,18 +1380,19 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32: +[ 16%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ -[ 9%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp -[ 9%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp -[ 10%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp -[ 10%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 60 | props->add (0, "host"); + | ^~~~~~ +[ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, @@ -1212,16 +1408,33 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function 'bool gatb::core::bank::impl::checkMagic(FILE*)': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 54 | fread (&value, sizeof(value), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function 'virtual void gatb::core::bank::impl::BankBinary::Iterator::next()': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 11%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 60 | props->add (0, "host"); + | ^~~~~~ +[ 17%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp +[ 17%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u +[ 18%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp +[ 18%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, @@ -1237,8 +1450,22 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -[ 11%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u +[ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, @@ -1253,12 +1480,31 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u +[ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Configuration.cpp +[ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type' {aka 'unsigned int'} [-Wformat=] + 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); + | ~~^ ~~~~~~~~~~~~~~~~~~ + | | | + | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} + | %u +[ 20%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp +[ 20%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp +[ 20%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Configuration.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -1275,33 +1521,31 @@ | | | | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u -[ 11%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp -[ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp -[ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Configuration.cpp -[ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp -[ 13%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o +[ 21%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp -[ 13%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o +[ 21%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp -[ 14%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o +[ 22%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp +[ 23%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp -[ 14%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o +[ 23%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp -[ 14%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankFasta.cpp -[ 14%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o +[ 23%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp -[ 15%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o +[ 23%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include 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-I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp +[ 26%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp +[ 26%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp -[ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o +[ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp -[ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o +[ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, @@ -1315,11 +1559,14 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -[ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o +[ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp -[ 17%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o +[ 28%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp -[ 18%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o +[ 28%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp +[ 28%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp: In member function 'void gatb::core::kmer::impl::Repartitor::printInfo()': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:307:41: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=] 307 | printf("Repartitor : nbMinimizers=%ld\n", _nb_minims); @@ -1334,40 +1581,80 @@ | | | | long int u_int64_t {aka long long unsigned int} | %lld -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankHelpers.cpp -[ 18%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp -[ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o +[ 29%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp -[ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o +[ 29%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.cpp -[ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o +[ 29%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp -[ 20%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o +[ 30%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp +[ 31%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp -[ 20%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o +[ 31%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/ModelData.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u +[ 31%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o -c 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-I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/api/Data.cpp -[ 25%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o +[ 37%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp -[ 25%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp: In member function 'void gatb::core::kmer::impl::Repartitor::printInfo()': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:307:41: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=] + 307 | printf("Repartitor : nbMinimizers=%ld\n", _nb_minims); + | ~~^ ~~~~~~~~~~ + | | | + | | u_int64_t {aka long long unsigned int} + | long int + | %lld +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:308:71: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=] + 308 | for (u_int64_t ii=0; ii<_nb_minims; ii++ ) { printf(" table[%ld] = %d \n",ii,_repart_table[ii]); } + | ~~^ ~~ + | | | + | long int u_int64_t {aka long long unsigned int} + | %lld +[ 37%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp +[ 38%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp +[ 39%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, @@ -1383,9 +1670,12 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp -[ 26%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp +[ 39%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp +[ 39%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp +[ 39%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, @@ -1416,8 +1706,14 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -[ 27%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankSplitter.cpp +[ 40%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp +[ 40%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp +[ 41%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/ThreadMacos.cpp +[ 41%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function 'void Leon::createBloom()': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:323:26: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] 323 | getInfo()->add (0, "Abundance threshold"); @@ -1457,8 +1753,10 @@ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:1429:23: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] 1429 | getInfo()->add(0, "Decompression"); | ^~~~~~~~~~~~~~~ -[ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp +[ 41%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o -c 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/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp: In member function 'virtual void gatb::core::tools::misc::impl::ProgressTimerAndSystem::fillBuffer(double)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", @@ -1493,10 +1791,16 @@ | ~~~~~~~~~~~~~ | | | u_int64_t {aka long long unsigned int} -[ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include 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/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp -[ 31%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8: +[ 45%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/api/Data.cpp +[ 45%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -1532,47 +1832,19 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -[ 31%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp -[ 31%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp -[ 32%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp: In function 'long unsigned int gatb::core::debruijn::impl::logging(std::string)': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp:31:67: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=] - 31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ", - | ~~~^ - | | - | long unsigned int - | %4llu - 32 | mem, memMaxProcess); - | ~~~ - | | - | u_int64_t {aka long long unsigned int} -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp:31:73: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=] - 31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ", - | ~~~^ - | | - | long unsigned int - | %4llu - 32 | mem, memMaxProcess); - | ~~~~~~~~~~~~~ - | | - | u_int64_t {aka long long unsigned int} -[ 32%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp -[ 33%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp -[ 34%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp -[ 34%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp +[ 46%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Tool.cpp +[ 47%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp +[ 47%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -1581,14 +1853,15 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -[ 35%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp -[ 35%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp -[ 35%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2: +[ 47%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -1597,10 +1870,124 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -[ 35%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function 'void Leon::createBloom()': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:323:26: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 323 | getInfo()->add (0, "Abundance threshold"); + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:328:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 328 | getInfo()->add (0, "Abundance threshold"); + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function 'void Leon::executeCompression()': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:404:22: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 404 | getInfo()->add (0, "Input format: FastQ"); + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:410:30: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 410 | getInfo()->add (0, "Quality compression: LOSSLESS mode"); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:412:30: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 412 | getInfo()->add (0, "Quality compression: lossy mode (use '-lossless' for lossless compression)"); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:422:22: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 422 | getInfo()->add (0, "Input format: FastA"); + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:429:22: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 429 | getInfo()->add (0, "Input format: unknown. Input extension must be one among fasta (.fa, .fasta) or fastq (.fq, .fastq)"); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function 'void Leon::endCompression()': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:727:23: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 727 | getInfo()->add(0, "End compression"); + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function 'void Leon::endHeaderCompression()': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:883:20: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 883 | getInfo()->add(0, "End Header compression"); + | ^~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function 'void Leon::endDnaCompression()': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:970:21: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 970 | getInfo()->add(0, "End Sequence compression"); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function 'void Leon::executeDecompression()': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:1429:23: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 1429 | getInfo()->add(0, "Decompression"); + | ^~~~~~~~~~~~~~~ +[ 47%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp +[ 48%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp +[ 48%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp +[ 50%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Property.cpp +[ 50%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function 'virtual void gatb::core::tools::misc::impl::Properties::setInt(const string&, const int64_t&)': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Property.cpp:438:42: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'long long int' [-Wformat=] + 438 | snprintf (buffer, sizeof(buffer), "%ld", value); + | ~~^ ~~~~~ + | | | + | | long long int + | long int + | %lld +[ 51%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp: In member function 'virtual void gatb::core::tools::misc::impl::ProgressTimerAndSystem::fillBuffer(double)': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=] + 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", + | ~~~^ + | | + | long unsigned int + | %4llu + 351 | _cpuinfo->getUsage(), + 352 | mem, _memMax, memMaxProcess + | ~~~ + | | + | u_int64_t {aka long long unsigned int} +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:68: warning: format '%lu' expects argument of type 'long unsigned int', but argument 6 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=] + 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", + | ~~~^ + | | + | long unsigned int + | %4llu + 351 | _cpuinfo->getUsage(), + 352 | mem, _memMax, memMaxProcess + | ~~~~~~~ + | | + | u_int64_t {aka long long unsigned int} +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:74: warning: format '%lu' expects argument of type 'long unsigned int', but argument 7 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=] + 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", + | ~~~^ + | | + | long unsigned int + | %4llu + 351 | _cpuinfo->getUsage(), + 352 | mem, _memMax, memMaxProcess + | ~~~~~~~~~~~~~ + | | + | u_int64_t {aka long long unsigned int} +[ 51%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp +[ 51%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp +[ 51%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp +[ 52%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp +[ 52%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Tool.cpp +[ 53%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp +[ 53%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp +[ 54%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp +[ 54%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp +[ 55%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp +[ 55%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp +[ 55%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -1609,6 +1996,11 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp +[ 55%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp +[ 56%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 128; std::string = std::__cxx11::basic_string]' /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:30:9: required from here @@ -1633,6 +2025,30 @@ | ~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} +[ 57%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp +[ 57%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 32; std::string = std::__cxx11::basic_string]' /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:30:9: required from here @@ -1657,16 +2073,34 @@ | ~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 64; std::string = std::__cxx11::basic_string]' +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:30:9: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:842:28: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::unordered_map, std::equal_to, std::allocator > >::size_type' {aka 'unsigned int'} [-Wformat=] + 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", + | ~~~~^ + | | + | long unsigned int + | %12u + 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, + | ~~~~~~~~~~~~~~~~~~~~~~~ + | | + | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:842:66: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::unordered_map, std::equal_to, std::allocator > >::size_type' {aka 'unsigned int'} [-Wformat=] + 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", + | ~~^ + | | + | long unsigned int + | %u + 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, + 844 | _final_hash.size() ); + | ~~~~~~~~~~~~~~~~~~ + | | + | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} +[ 57%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp +[ 58%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': @@ -1677,6 +2111,34 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 96; std::string = std::__cxx11::basic_string]' +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:30:9: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:842:28: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::unordered_map, std::equal_to, std::allocator > >::size_type' {aka 'unsigned int'} [-Wformat=] + 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", + | ~~~~^ + | | + | long unsigned int + | %12u + 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, + | ~~~~~~~~~~~~~~~~~~~~~~~ + | | + | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:842:66: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::unordered_map, std::equal_to, std::allocator > >::size_type' {aka 'unsigned int'} [-Wformat=] + 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", + | ~~^ + | | + | long unsigned int + | %u + 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, + 844 | _final_hash.size() ); + | ~~~~~~~~~~~~~~~~~~ + | | + | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} +[ 58%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp +[ 59%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: @@ -1716,9 +2178,64 @@ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:195:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] 195 | result.add (0, "histogram"); | ^~~~~~~~~~~ +[ 59%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp +[ 59%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSoliditySum<32>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 153 | result.add (0, "kmers"); + | ^~~~~~~ +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSolidityAll<32>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSolidityCustom<32>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSolidityOne<32>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSolidityMax<32>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSolidityMin<32>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:28, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorDump::getProperties() const [with unsigned int span = 32]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:159:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:172:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 172 | result.add (0, "partitions"); + | ^~~~~~~~~~~~ +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorHistogram::getProperties() const [with unsigned int span = 32]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:191:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:195:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 195 | result.add (0, "histogram"); + | ^~~~~~~~~~~ +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u +[ 60%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 64; std::string = std::__cxx11::basic_string]' -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:30:9: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 128; std::string = std::__cxx11::basic_string]' +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:30:9: required from here /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:842:28: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::unordered_map, std::equal_to, std::allocator > >::size_type' {aka 'unsigned int'} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ @@ -1740,13 +2257,28 @@ | ~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -1779,28 +2311,179 @@ | ~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} -[ 35%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp -[ 36%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 60 | props->add (0, "host"); - | ^~~~~~ +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 64; std::string = std::__cxx11::basic_string]' +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:30:9: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:842:28: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::unordered_map, std::equal_to, std::allocator > >::size_type' {aka 'unsigned int'} [-Wformat=] + 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", + | ~~~~^ + | | + | long unsigned int + | %12u + 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, + | ~~~~~~~~~~~~~~~~~~~~~~~ + | | + | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:842:66: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::unordered_map, std::equal_to, std::allocator > >::size_type' {aka 'unsigned int'} [-Wformat=] + 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", + | ~~^ + | | + | long unsigned int + | %u + 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, + 844 | _final_hash.size() ); + | ~~~~~~~~~~~~~~~~~~ + | | + | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 32; std::string = std::__cxx11::basic_string]' +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:30:9: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:842:28: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::unordered_map, std::equal_to, std::allocator > >::size_type' {aka 'unsigned int'} [-Wformat=] + 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", + | ~~~~^ + | | + | long unsigned int + | %12u + 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, + | ~~~~~~~~~~~~~~~~~~~~~~~ + | | + | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:842:66: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::unordered_map, std::equal_to, std::allocator > >::size_type' {aka 'unsigned int'} [-Wformat=] + 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", + | ~~^ + | | + | long unsigned int + | %u + 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, + 844 | _final_hash.size() ); + | ~~~~~~~~~~~~~~~~~~ + | | + | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSoliditySum<128>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 153 | result.add (0, "kmers"); + | ^~~~~~~ +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSolidityAll<128>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSolidityCustom<128>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSolidityOne<128>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSolidityMax<128>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSolidityMin<128>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:28, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorDump::getProperties() const [with unsigned int span = 128]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:159:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:172:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 172 | result.add (0, "partitions"); + | ^~~~~~~~~~~~ +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorHistogram::getProperties() const [with unsigned int span = 128]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:191:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:195:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 195 | result.add (0, "histogram"); + | ^~~~~~~~~~~ +[ 60%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSoliditySum<64>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 153 | result.add (0, "kmers"); + | ^~~~~~~ +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSolidityAll<64>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSolidityCustom<64>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSolidityOne<64>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSolidityMax<64>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSolidityMin<64>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:28, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorDump::getProperties() const [with unsigned int span = 64]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:159:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:172:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 172 | result.add (0, "partitions"); + | ^~~~~~~~~~~~ +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorHistogram::getProperties() const [with unsigned int span = 64]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:191:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:195:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 195 | result.add (0, "histogram"); + | ^~~~~~~~~~~ +[ 61%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSoliditySum<96>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 153 | result.add (0, "kmers"); + | ^~~~~~~ +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSolidityAll<96>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSolidityCustom<96>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSolidityOne<96>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSolidityMax<96>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSolidityMin<96>]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:28, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorDump::getProperties() const [with unsigned int span = 96]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:159:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:172:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 172 | result.add (0, "partitions"); + | ^~~~~~~~~~~~ +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorHistogram::getProperties() const [with unsigned int span = 96]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:191:35: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:195:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 195 | result.add (0, "histogram"); + | ^~~~~~~~~~~ +[ 61%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp +[ 62%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: @@ -1840,8 +2523,6 @@ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:195:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] 195 | result.add (0, "histogram"); | ^~~~~~~~~~~ -[ 36%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: @@ -1881,12 +2562,12 @@ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:195:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] 195 | result.add (0, "histogram"); | ^~~~~~~~~~~ -[ 37%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp -[ 37%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o +[ 62%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp -[ 37%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o +[ 62%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp +[ 62%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: @@ -1926,12 +2607,16 @@ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:195:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] 195 | result.add (0, "histogram"); | ^~~~~~~~~~~ -[ 38%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp -[ 38%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp -[ 39%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp +[ 62%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp +[ 63%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp +[ 63%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp +[ 64%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp +[ 64%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, @@ -1945,8 +2630,12 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -[ 39%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp +[ 65%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp +[ 65%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp +[ 66%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, @@ -1960,17 +2649,11 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -[ 39%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp -[ 40%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp -[ 40%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:6: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:6: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -1979,13 +2662,19 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -[ 41%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp +[ 66%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp +[ 67%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp +[ 67%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp +[ 67%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:6: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:6: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -2036,12 +2725,116 @@ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ -[ 41%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o +[ 68%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp:6: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u +[ 68%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp +[ 68%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:6: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:6: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u +[ 69%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:6: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u +[ 69%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp +[ 70%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:7: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 60 | props->add (0, "host"); + | ^~~~~~ +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:7: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 60 | props->add (0, "host"); + | ^~~~~~ +[ 70%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp -[ 42%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o +[ 71%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp -[ 42%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, @@ -2057,8 +2850,6 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -[ 42%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:7: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': @@ -2080,14 +2871,44 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:7: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 60 | props->add (0, "host"); + | ^~~~~~ +[ 71%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:7: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 60 | props->add (0, "host"); + | ^~~~~~ +[ 72%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -2102,6 +2923,61 @@ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ +[ 72%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type' {aka 'unsigned int'} [-Wformat=] + 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); + | ~~^ ~~~~~~~~~~~~~~~~~~ + | | | + | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} + | %u +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:18:16: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set > >, std::less > > >, std::allocator > > > >::size_type' {aka 'unsigned int'} [-Wformat=] + 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); + | ~~^ ~~~~~~~~~~~~~~~~~~ + | | | + | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} + | %u +[ 72%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u +[ 73%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here @@ -2119,6 +2995,8 @@ | | | | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u +[ 73%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, @@ -2152,16 +3030,14 @@ | | | | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u -[ 43%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp -[ 44%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -2170,11 +3046,27 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 60 | props->add (0, "host"); - | ^~~~~~ +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type' {aka 'unsigned int'} [-Wformat=] + 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); + | ~~^ ~~~~~~~~~~~~~~~~~~ + | | | + | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} + | %u +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:18:16: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set > >, std::less > > >, std::allocator > > > >::size_type' {aka 'unsigned int'} [-Wformat=] + 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); + | ~~^ ~~~~~~~~~~~~~~~~~~ + | | | + | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} + | %u +[ 75%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp +[ 75%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, @@ -2208,16 +3100,14 @@ | | | | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u -[ 44%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp -[ 44%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.hpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp:20: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -2226,8 +3116,25 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -[ 45%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type' {aka 'unsigned int'} [-Wformat=] + 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); + | ~~^ ~~~~~~~~~~~~~~~~~~ + | | | + | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} + | %u +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:18:16: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set > >, std::less > > >, std::allocator > > > >::size_type' {aka 'unsigned int'} [-Wformat=] + 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); + | ~~^ ~~~~~~~~~~~~~~~~~~ + | | | + | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} + | %u +[ 75%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, @@ -2244,8 +3151,6 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -[ 46%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here @@ -2263,8 +3168,10 @@ | | | | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u -[ 46%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp +[ 76%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp +[ 76%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, @@ -2290,8 +3197,10 @@ from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -2300,8 +3209,25 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -[ 46%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o +[ 76%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type' {aka 'unsigned int'} [-Wformat=] + 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); + | ~~^ ~~~~~~~~~~~~~~~~~~ + | | | + | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} + | %u +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:18:16: required from here +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set > >, std::less > > >, std::allocator > > > >::size_type' {aka 'unsigned int'} [-Wformat=] + 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); + | ~~^ ~~~~~~~~~~~~~~~~~~ + | | | + | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} + | %u In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, @@ -2323,14 +3249,15 @@ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ -[ 46%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp +[ 77%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -2339,10 +3266,14 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -[ 46%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:2: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 60 | props->add (0, "host"); + | ^~~~~~ +[ 77%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp -[ 47%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, @@ -2364,68 +3295,11 @@ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type' {aka 'unsigned int'} [-Wformat=] - 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); - | ~~^ ~~~~~~~~~~~~~~~~~~ - | | | - | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} - | %u -[ 47%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp -[ 48%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp -[ 48%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp -[ 48%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Configuration.cpp -[ 50%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp -[ 50%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp -[ 51%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp -[ 51%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp -[ 51%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp -[ 52%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o +[ 78%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -[ 53%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp -[ 53%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, @@ -2444,10 +3318,8 @@ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ -[ 54%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp -[ 54%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp +[ 78%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, @@ -2463,23 +3335,21 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -[ 54%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/ModelData.cpp -[ 55%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31, from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ +[ 78%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -2488,12 +3358,14 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:3: +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:2: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ +[ 79%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, @@ -2515,870 +3387,17 @@ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp: In member function 'void gatb::core::kmer::impl::Repartitor::printInfo()': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:307:41: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=] - 307 | printf("Repartitor : nbMinimizers=%ld\n", _nb_minims); - | ~~^ ~~~~~~~~~~ - | | | - | | u_int64_t {aka long long unsigned int} - | long int - | %lld -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:308:71: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=] - 308 | for (u_int64_t ii=0; ii<_nb_minims; ii++ ) { printf(" table[%ld] = %d \n",ii,_repart_table[ii]); } - | ~~^ ~~ - | | | - | long int u_int64_t {aka long long unsigned int} - | %lld -[ 55%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. 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-o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp -[ 56%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp -[ 56%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp -[ 57%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp -[ 57%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp -[ 57%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.cpp -[ 58%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp -[ 58%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp -[ 58%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp -[ 59%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/ThreadMacos.cpp -[ 59%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp -[ 59%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:1: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:3: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 60 | props->add (0, "host"); - | ^~~~~~ -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -[ 60%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_128.cpp -[ 60%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp -[ 61%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp -[ 61%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp -[ 62%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp -[ 62%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function 'void Leon::createBloom()': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:323:26: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 323 | getInfo()->add (0, "Abundance threshold"); - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:328:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 328 | getInfo()->add (0, "Abundance threshold"); - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function 'void Leon::executeCompression()': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:404:22: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 404 | getInfo()->add (0, "Input format: FastQ"); - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:410:30: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 410 | getInfo()->add (0, "Quality compression: LOSSLESS mode"); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:412:30: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 412 | getInfo()->add (0, "Quality compression: lossy mode (use '-lossless' for lossless compression)"); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:422:22: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 422 | getInfo()->add (0, "Input format: FastA"); - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:429:22: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 429 | getInfo()->add (0, "Input format: unknown. Input extension must be one among fasta (.fa, .fasta) or fastq (.fq, .fastq)"); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function 'void Leon::endCompression()': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:727:23: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 727 | getInfo()->add(0, "End compression"); - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function 'void Leon::endHeaderCompression()': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:883:20: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 883 | getInfo()->add(0, "End Header compression"); - | ^~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function 'void Leon::endDnaCompression()': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:970:21: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 970 | getInfo()->add(0, "End Sequence compression"); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp: In member function 'void Leon::executeDecompression()': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:1429:23: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 1429 | getInfo()->add(0, "Decompression"); - | ^~~~~~~~~~~~~~~ -[ 63%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/RangeCoder.cpp -[ 63%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp -[ 63%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp -[ 64%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/api/Data.cpp -[ 64%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 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src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp: In member function 'virtual void gatb::core::tools::misc::impl::ProgressTimerAndSystem::fillBuffer(double)': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=] - 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", - | ~~~^ - | | - | long unsigned int - | %4llu - 351 | _cpuinfo->getUsage(), - 352 | mem, _memMax, memMaxProcess - | ~~~ - | | - | u_int64_t {aka long long unsigned int} -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:68: warning: format '%lu' expects argument of type 'long unsigned int', but argument 6 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=] - 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", - | ~~~^ - | | - | long unsigned int - | %4llu - 351 | _cpuinfo->getUsage(), - 352 | mem, _memMax, memMaxProcess - | ~~~~~~~ - | | - | u_int64_t {aka long long unsigned int} -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:74: warning: format '%lu' expects argument of type 'long unsigned int', but argument 7 has type 'u_int64_t' {aka 'long long unsigned int'} [-Wformat=] - 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", - | ~~~^ - | | - | long unsigned int - | %4llu - 351 | _cpuinfo->getUsage(), - 352 | mem, _memMax, memMaxProcess - | ~~~~~~~~~~~~~ - | | - | u_int64_t {aka long long unsigned int} -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function 'virtual void gatb::core::tools::misc::impl::Properties::setInt(const string&, const int64_t&)': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Property.cpp:438:42: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'long long int' [-Wformat=] - 438 | snprintf (buffer, sizeof(buffer), "%ld", value); - | ~~^ ~~~~~ - | | | - | | long long int - | long int - | %lld -[ 67%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c 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-I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp -[ 70%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp -[ 71%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp -[ 71%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -[ 71%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 128; std::string = std::__cxx11::basic_string]' -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:30:9: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:842:28: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::unordered_map, std::equal_to, std::allocator > >::size_type' {aka 'unsigned int'} [-Wformat=] - 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", - | ~~~~^ - | | - | long unsigned int - | %12u - 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, - | ~~~~~~~~~~~~~~~~~~~~~~~ - | | - | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:842:66: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::unordered_map, std::equal_to, std::allocator > >::size_type' {aka 'unsigned int'} [-Wformat=] - 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", - | ~~^ - | | - | long unsigned int - | %u - 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, - 844 | _final_hash.size() ); - | ~~~~~~~~~~~~~~~~~~ - | | - | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} -[ 72%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 32; std::string = std::__cxx11::basic_string]' -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:30:9: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:842:28: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::unordered_map, std::equal_to, std::allocator > >::size_type' {aka 'unsigned int'} [-Wformat=] - 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", - | ~~~~^ - | | - | long unsigned int - | %12u - 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, - | ~~~~~~~~~~~~~~~~~~~~~~~ - | | - | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:842:66: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::unordered_map, std::equal_to, std::allocator > >::size_type' {aka 'unsigned int'} [-Wformat=] - 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", - | ~~^ - | | - | long unsigned int - | %u - 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, - 844 | _final_hash.size() ); - | ~~~~~~~~~~~~~~~~~~ - | | - | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} -[ 72%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSoliditySum<128>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 153 | result.add (0, "kmers"); - | ^~~~~~~ -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSolidityAll<128>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSolidityCustom<128>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSolidityOne<128>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSolidityMax<128>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 128; Derived = gatb::core::kmer::impl::CountProcessorSolidityMin<128>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 64; std::string = std::__cxx11::basic_string]' -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:30:9: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:842:28: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::unordered_map, std::equal_to, std::allocator > >::size_type' {aka 'unsigned int'} [-Wformat=] - 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", - | ~~~~^ - | | - | long unsigned int - | %12u - 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, - | ~~~~~~~~~~~~~~~~~~~~~~~ - | | - | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:842:66: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::unordered_map, std::equal_to, std::allocator > >::size_type' {aka 'unsigned int'} [-Wformat=] - 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", - | ~~^ - | | - | long unsigned int - | %u - 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, - 844 | _final_hash.size() ); - | ~~~~~~~~~~~~~~~~~~ - | | - | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:28, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorDump::getProperties() const [with unsigned int span = 128]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:159:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:172:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 172 | result.add (0, "partitions"); - | ^~~~~~~~~~~~ -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorHistogram::getProperties() const [with unsigned int span = 128]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:191:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:195:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 195 | result.add (0, "histogram"); - | ^~~~~~~~~~~ -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In instantiation of 'uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from 'void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 96; std::string = std::__cxx11::basic_string]' -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:30:9: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:842:28: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::unordered_map, std::equal_to, std::allocator > >::size_type' {aka 'unsigned int'} [-Wformat=] - 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", - | ~~~~^ - | | - | long unsigned int - | %12u - 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, - | ~~~~~~~~~~~~~~~~~~~~~~~ - | | - | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:842:66: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::unordered_map, std::equal_to, std::allocator > >::size_type' {aka 'unsigned int'} [-Wformat=] - 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", - | ~~^ - | | - | long unsigned int - | %u - 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, - 844 | _final_hash.size() ); - | ~~~~~~~~~~~~~~~~~~ - | | - | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSoliditySum<32>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 153 | result.add (0, "kmers"); - | ^~~~~~~ -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSolidityAll<32>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSolidityCustom<32>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSolidityOne<32>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSolidityMax<32>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 32; Derived = gatb::core::kmer::impl::CountProcessorSolidityMin<32>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:28, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorDump::getProperties() const [with unsigned int span = 32]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:159:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:172:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 172 | result.add (0, "partitions"); - | ^~~~~~~~~~~~ -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorHistogram::getProperties() const [with unsigned int span = 32]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:191:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:195:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 195 | result.add (0, "histogram"); - | ^~~~~~~~~~~ -[ 73%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSoliditySum<64>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 153 | result.add (0, "kmers"); - | ^~~~~~~ -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSolidityAll<64>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSolidityCustom<64>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSolidityOne<64>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSolidityMax<64>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 64; Derived = gatb::core::kmer::impl::CountProcessorSolidityMin<64>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:28, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorDump::getProperties() const [with unsigned int span = 64]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:159:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:172:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 172 | result.add (0, "partitions"); - | ^~~~~~~~~~~~ -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorHistogram::getProperties() const [with unsigned int span = 64]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:191:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:195:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 195 | result.add (0, "histogram"); - | ^~~~~~~~~~~ -[ 73%] Linking CXX shared library ../lib/None/libgatbcore.so -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-dynamic.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgatbcore.so.3 -o ../lib/None/libgatbcore.so.3 CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o 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CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o 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CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -[ 73%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp -[ 73%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp -[ 75%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp -[ 75%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSoliditySum<96>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 153 | result.add (0, "kmers"); - | ^~~~~~~ -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSolidityAll<96>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSolidityCustom<96>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSolidityOne<96>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSolidityMax<96>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorSolidityAbstract::getProperties() const [with unsigned int span = 96; Derived = gatb::core::kmer::impl::CountProcessorSolidityMin<96>]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:150:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorSolidity.hpp:153:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:28, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorDump::getProperties() const [with unsigned int span = 96]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:159:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorDump.hpp:172:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 172 | result.add (0, "partitions"); - | ^~~~~~~~~~~~ -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessor.hpp:27, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp: In instantiation of 'gatb::core::tools::misc::impl::Properties gatb::core::kmer::impl::CountProcessorHistogram::getProperties() const [with unsigned int span = 96]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:191:35: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp:195:24: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 195 | result.add (0, "histogram"); - | ^~~~~~~~~~~ -[ 76%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp -[ 76%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp:6: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library ../lib/None/libgatbcore.so.3 ../lib/None/libgatbcore.so.3 ../lib/None/libgatbcore.so -make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' -[ 76%] Built target gatbcore-dynamic -[ 76%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp -[ 77%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:6: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:6: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -[ 77%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:6: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -[ 78%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp -[ 78%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:7: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 60 | props->add (0, "host"); - | ^~~~~~ -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:7: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 60 | props->add (0, "host"); - | ^~~~~~ -[ 78%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp -[ 79%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:7: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 60 | props->add (0, "host"); - | ^~~~~~ -[ 79%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp -[ 80%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp -[ 80%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:7: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 60 | props->add (0, "host"); - | ^~~~~~ -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type' {aka 'unsigned int'} [-Wformat=] - 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); - | ~~^ ~~~~~~~~~~~~~~~~~~ - | | | - | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} - | %u -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:18:16: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set > >, std::less > > >, std::allocator > > > >::size_type' {aka 'unsigned int'} [-Wformat=] - 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); - | ~~^ ~~~~~~~~~~~~~~~~~~ - | | | - | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} - | %u -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type' {aka 'unsigned int'} [-Wformat=] - 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); - | ~~^ ~~~~~~~~~~~~~~~~~~ - | | | - | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} - | %u -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:18:16: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set > >, std::less > > >, std::allocator > > > >::size_type' {aka 'unsigned int'} [-Wformat=] - 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); - | ~~^ ~~~~~~~~~~~~~~~~~~ - | | | - | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} - | %u -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type' {aka 'unsigned int'} [-Wformat=] - 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); - | ~~^ ~~~~~~~~~~~~~~~~~~ - | | | - | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} - | %u -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:18:16: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set > >, std::less > > >, std::allocator > > > >::size_type' {aka 'unsigned int'} [-Wformat=] - 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); - | ~~^ ~~~~~~~~~~~~~~~~~~ - | | | - | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} - | %u -[ 80%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp -[ 81%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp -[ 81%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp -[ 82%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o +[ 80%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type' {aka 'unsigned int'} [-Wformat=] - 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); - | ~~^ ~~~~~~~~~~~~~~~~~~ - | | | - | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} - | %u -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of 'bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:18:16: required from here -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set > >, std::less > > >, std::allocator > > > >::size_type' {aka 'unsigned int'} [-Wformat=] - 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); - | ~~^ ~~~~~~~~~~~~~~~~~~ - | | | - | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} - | %u +[ 80%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -3388,7 +3407,7 @@ | long unsigned int | %u In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:2: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:2: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] 60 | props->add (0, "host"); @@ -3399,7 +3418,7 @@ from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -3409,18 +3428,20 @@ | long unsigned int | %u In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:2: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:2: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ +[ 80%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -3429,21 +3450,21 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:2: +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ -[ 82%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp +[ 80%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:1: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -3452,15 +3473,13 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:2: +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ -[ 82%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp -[ 83%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o +[ 81%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, @@ -3468,7 +3487,7 @@ from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:1: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:1: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -3478,14 +3497,14 @@ | long unsigned int | %u In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:3: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ -[ 83%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o +[ 81%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp -[ 84%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o +[ 82%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, @@ -3493,7 +3512,7 @@ from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:1: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -3508,7 +3527,7 @@ from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:1: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -3518,11 +3537,27 @@ | long unsigned int | %u In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:3: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:3: +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] + 60 | props->add (0, "host"); + | ^~~~~~ +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ +[ 82%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_128.cpp +[ 82%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp +[ 83%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp +[ 83%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp +[ 83%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, @@ -3539,25 +3574,19 @@ | long unsigned int | %u In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:3: -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] - 60 | props->add (0, "host"); - | ^~~~~~ -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:31, from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp: In static member function 'static gatb::core::tools::misc::IProperties& gatb::core::tools::misc::impl::HostInfo::getInfo()': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/HostInfo.hpp:60:28: warning: ISO C++ forbids converting a string constant to 'va_list' {aka 'char*'} [-Wwrite-strings] 60 | props->add (0, "host"); | ^~~~~~ -[ 84%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_128.cpp -[ 84%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp -[ 85%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp -[ 85%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp +[ 84%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_128.cpp +[ 84%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp +[ 85%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp +[ 85%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp [ 86%] Linking CXX static library ../lib/None/libgatbcore.a cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/gatbcore-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-static.dir/link.txt --verbose=1 @@ -3572,51 +3601,76 @@ make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools/CMakeFiles/leon.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools/CMakeFiles/dbgh5.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit/CMakeFiles/gatb-core-cppunit.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools/CMakeFiles/dbginfo.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core 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"/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools/CMakeFiles/leon.dir/depend.internal". -Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools/CMakeFiles/leon.dir/depend.internal". +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools/CMakeFiles/dbgh5.dir/DependInfo.cmake --color= Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools/CMakeFiles/dbginfo.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools/CMakeFiles/dbginfo.dir/depend.internal". Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools/CMakeFiles/dbginfo.dir/depend.internal". +Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools/CMakeFiles/leon.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools/CMakeFiles/leon.dir/depend.internal". +Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools/CMakeFiles/leon.dir/depend.internal". Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit/CMakeFiles/gatb-core-cppunit.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit/CMakeFiles/gatb-core-cppunit.dir/depend.internal". Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit/CMakeFiles/gatb-core-cppunit.dir/depend.internal". +Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools/CMakeFiles/dbgh5.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools/CMakeFiles/dbgh5.dir/depend.internal". +Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools/CMakeFiles/dbgh5.dir/depend.internal". +Scanning dependencies of target dbginfo Scanning dependencies of target dbgh5 -make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' -make -f tools/CMakeFiles/dbgh5.dir/build.make tools/CMakeFiles/dbgh5.dir/build Scanning dependencies of target leon make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' +make -f tools/CMakeFiles/dbginfo.dir/build.make tools/CMakeFiles/dbginfo.dir/build +make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' make -f tools/CMakeFiles/leon.dir/build.make tools/CMakeFiles/leon.dir/build -Scanning dependencies of target dbginfo make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' -make -f tools/CMakeFiles/dbginfo.dir/build.make tools/CMakeFiles/dbginfo.dir/build +make -f tools/CMakeFiles/dbgh5.dir/build.make tools/CMakeFiles/dbgh5.dir/build make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' -[ 87%] Building CXX object tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/dbgh5.dir/dbgh5.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools/dbgh5.cpp +[ 87%] Building CXX object tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/dbginfo.dir/dbginfo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools/dbginfo.cpp [ 87%] Building CXX object tools/CMakeFiles/leon.dir/leon.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/leon.dir/leon.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools/leon.cpp -[ 88%] Building CXX object tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/dbginfo.dir/dbginfo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools/dbginfo.cpp +[ 88%] Building CXX object tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o Scanning dependencies of target gatb-core-cppunit +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. 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-I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/bank/TestBank.cpp [ 89%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/bank/TestLeon.cpp [ 89%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g 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/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/debruijn/TestDebruijnUnitigs.cpp +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/debruijn/TestSimplifications.cpp +[ 91%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/debruijn/TestSimplificationsUnitigs.cpp +[ 92%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/kmer/TestDSK.cpp +[ 92%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/kmer/TestDebloom.cpp +[ 92%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/kmer/TestKmer.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/debruijn/TestSimplifications.cpp:33: +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': +/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 546 | printf("rank array : size %lu \n",_ranks.size()); + | ~~^ ~~~~~~~~~~~~~ + | | | + | | std::vector::size_type {aka unsigned int} + | long unsigned int + | %u /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/bank/TestBank.cpp: In member function 'void gatb::tests::TestBank::bank_checkSample1_aux(const string&, gatb::core::bank::impl::BankFasta::Iterator::CommentMode_e)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/bank/TestBank.cpp:118:53: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 118 | snprintf (buffer, sizeof(buffer), "seq%ld%s", i+1, (mode == BankFasta::Iterator::FULL ? " generic" : "")); @@ -3657,8 +3711,7 @@ from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools/dbginfo.cpp:20: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/debruijn/TestDebruijn.cpp:33: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -3672,7 +3725,8 @@ from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools/dbgh5.cpp:20: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/bank/TestLeon.cpp:32: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -3686,22 +3740,7 @@ from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools/leon.cpp:20: -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': -/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 546 | printf("rank array : size %lu \n",_ranks.size()); - | ~~^ ~~~~~~~~~~~~~ - | | | - | | std::vector::size_type {aka unsigned int} - | long unsigned int - | %u -[ 90%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/debruijn/TestDebruijnUnitigs.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/debruijn/TestDebruijn.cpp:33: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools/dbgh5.cpp:20: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -3714,9 +3753,8 @@ from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/bank/TestLeon.cpp:32: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/debruijn/TestSimplificationsUnitigs.cpp:33: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -3725,18 +3763,6 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools/dbgh5.cpp: In function 'void sendEmail(gatb::core::tools::misc::IProperties*, gatb::core::tools::misc::IProperties*)': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools/dbgh5.cpp:127:13: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 127 | ::system (cmd.str().c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ -[ 91%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/debruijn/TestSimplifications.cpp -[ 91%] Linking CXX executable ../bin/None/dbginfo -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbginfo.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/dbginfo.dir/dbginfo.cpp.o -o ../bin/None/dbginfo -Wl,-rpath,/usr/lib/i386-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/i386-linux-gnu/libpthread.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so -[ 92%] Linking CXX executable ../bin/None/leon -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/leon.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/leon.dir/leon.cpp.o -o ../bin/None/leon -Wl,-rpath,/usr/lib/i386-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/i386-linux-gnu/libpthread.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, @@ -3754,7 +3780,8 @@ from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/debruijn/TestSimplifications.cpp:33: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools/dbginfo.cpp:20: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -3763,22 +3790,12 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' -[ 92%] Built target leon -[ 92%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/debruijn/TestSimplificationsUnitigs.cpp -[ 92%] Linking CXX executable ../bin/None/dbgh5 -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbgh5.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/dbgh5.dir/dbgh5.cpp.o -o ../bin/None/dbgh5 -Wl,-rpath,/usr/lib/i386-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/i386-linux-gnu/libpthread.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so -[ 93%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/kmer/TestDSK.cpp -make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/debruijn/TestSimplificationsUnitigs.cpp:33: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools/leon.cpp:20: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h: In member function 'void boomphf::bitVector::print() const': /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None/BooPHF/BooPHF.h:546:32: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); @@ -3787,17 +3804,23 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -[ 93%] Built target dbginfo -[ 93%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/kmer/TestDebloom.cpp -[ 93%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/kmer/TestKmer.cpp -make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' -[ 93%] Built target dbgh5 -[ 94%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools/dbgh5.cpp: In function 'void sendEmail(gatb::core::tools::misc::IProperties*, gatb::core::tools::misc::IProperties*)': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools/dbgh5.cpp:127:13: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 127 | ::system (cmd.str().c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ +[ 93%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/kmer/TestKmerBank.cpp -[ 94%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o +[ 93%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/kmer/TestMPHF.cpp +[ 94%] Linking CXX executable ../bin/None/leon +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/leon.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/leon.dir/leon.cpp.o -o ../bin/None/leon -Wl,-rpath,/usr/lib/i386-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/i386-linux-gnu/libpthread.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so +[ 94%] Linking CXX executable ../bin/None/dbginfo +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbginfo.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/dbginfo.dir/dbginfo.cpp.o -o ../bin/None/dbginfo -Wl,-rpath,/usr/lib/i386-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/i386-linux-gnu/libpthread.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so +[ 94%] Linking CXX executable ../bin/None/dbgh5 +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbgh5.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/dbgh5.dir/dbgh5.cpp.o -o ../bin/None/dbgh5 -Wl,-rpath,/usr/lib/i386-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/i386-linux-gnu/libpthread.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, @@ -3814,6 +3837,8 @@ cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/main.cpp [ 95%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/system/TestSystem.cpp +make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' +[ 95%] Built target leon [ 95%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/tools/collections/TestBag.cpp [ 96%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o @@ -3822,10 +3847,23 @@ cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/tools/collections/TestContainer.cpp [ 97%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/tools/collections/TestIterable.cpp +make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' +[ 97%] Built target dbginfo [ 97%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/tools/collections/TestMap.cpp +[ 97%] Linking CXX shared library ../lib/None/libgatbcore.so +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-dynamic.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgatbcore.so.3 -o ../lib/None/libgatbcore.so.3 CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o 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-I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/tools/misc/TestMisc.cpp +[100%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/tools/storage/TestStorage.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/tools/collections/TestMap.cpp:24: @@ -3837,12 +3875,9 @@ | | std::vector::size_type {aka unsigned int} | long unsigned int | %u -[ 98%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/tools/math/TestMath.cpp -[ 98%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o -c 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/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/tools/storage/TestStorage.cpp +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library ../lib/None/libgatbcore.so.3 ../lib/None/libgatbcore.so.3 ../lib/None/libgatbcore.so +make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' +[100%] Built target gatbcore-dynamic [100%] Linking CXX executable ../../bin/None/gatb-core-cppunit cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu/test/unit && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatb-core-cppunit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o -o ../../bin/None/gatb-core-cppunit -Wl,-rpath,/usr/lib/i386-linux-gnu/hdf5/serial: ../../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/i386-linux-gnu/libpthread.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/i386-linux-gnu/libcppunit.so @@ -3867,7 +3902,7 @@ Nothing to do here make[1]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg' dh_auto_install -O--sourcedirectory=gatb-core -Ngatb-core-testdata - cd obj-i686-linux-gnu && make -j8 install DESTDIR=/build/reproducible-path/gatb-core-1.4.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-i686-linux-gnu && make -j15 install DESTDIR=/build/reproducible-path/gatb-core-1.4.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core -B/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -3878,342 +3913,342 @@ /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/CMakeLists.txt -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage7.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage5.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage6.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage9.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage2.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage4.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage10.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage1.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage8.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage3.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage10.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/README.md --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators9.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators6.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading2.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators5.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading3.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators7.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading6.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators3.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/optionsparser2.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators8.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/observer1.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading1.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading7.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators4.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading4.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/ToyTool.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading5.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators2.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading8.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/optionsparser1.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators1.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/protos --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/protos/histo2D.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/protos/MicroSNP.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer3.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer14.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer4.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer17.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer8.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer7.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer1.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer2.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer10.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer12.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer11.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer13.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer16.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer5.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer9.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer15.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer6.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage9.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage5.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage7.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage2.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage6.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn7.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn9.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/traversal1.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn19.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn4.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn13.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn27.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn12.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn5.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn18.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn22.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn20.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn14.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn10.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn3.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/traversal2.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn16.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn25.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn21.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn22.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn6.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn26.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn1.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn15.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/traversal2.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn8.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn6.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn17.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn19.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn23.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn15.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn7.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn20.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn25.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn17.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn2.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn11.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn14.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn24.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn26.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn27.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/CMakeLists.txt --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/Makefile +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/traversal1.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn21.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn5.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn3.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn13.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn11.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn18.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank19.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank27.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank7.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank5.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank11.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank21.cpp +-- Installing: 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/build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank10.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank15.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank13.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank9.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank23.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank16.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank17.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank18.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank8.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank4.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank14.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank21.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank1.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank19.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank3.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank6.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank28.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank4.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank5.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank26.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank22.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank20.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank11.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank14.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank7.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank13.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank2.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank16.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank3.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank8.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank25.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank26.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank12.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank20.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/protos +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/protos/MicroSNP.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/protos/histo2D.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading7.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/observer1.cpp +-- Installing: 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/build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer14.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/./README.txt -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libgatbcore.a -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libgatbcore.so.3 -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libgatbcore.so -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/gatb_core.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2 +-- Installing: 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/build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/GraphUnitigs.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/IterativeExtensions.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Traversal.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/rank_vector.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/ContainerNode.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Frontline.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/ExtremityInfo.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/NodesDeleter.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/api +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/api/IContainerNode.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/template +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/ThreadMacos.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/ThreadLinux.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemLinux.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemMacos.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/System.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/MemoryCommon.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemCommon.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/TimeCommon.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/SystemInfoCommon.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ISmartPointer.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/Exception.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IFileSystem.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IMemory.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/types.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IThread.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ITime.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ISystemInfo.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/config_sha1.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/Bank.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/Banks.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankHelpers.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankSplitter.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankStrings.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankComposite.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/Alphabet.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankRandom.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/AbstractBank.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankConverterAlgorithm.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankAlbum.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankFasta.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankBinary.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api/IBank.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api/Sequence.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api/IAlphabet.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/Observer.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/IteratorHelpers.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/Command.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/IObserver.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/ICommand.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/Iterator.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/Bloom.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/ContainerSet.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BooPHF.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BloomGroup.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BagPartition.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BagCache.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BagFile.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/MapMPHF.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/CollectionCache.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/Hash16.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/CollectionAbstract.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/IterableHelpers.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/IteratorFile.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/OAHash.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/api +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/api/Bag.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/api/Collection.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/api/Container.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/api/Iterable.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Tool.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Histogram.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Property.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Progress.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Stringify.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/OptionsParser.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/StringLine.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Algorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/HostInfo.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Progress.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/XmlReader.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Tokenizer.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/StringLine.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/LibraryInfo.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Pool.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/XmlReader.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Stringify.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Histogram.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/TimeInfo.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Property.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/HostInfo.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/OptionsParser.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/LibraryInfo.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Tool.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/StringsRepository.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Range.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Vector.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Abundance.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/IHistogram.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Range.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Macros.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/IProperty.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Data.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Enums.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/IOptionsParser.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Macros.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Data.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Vector.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt128.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt32.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/FastMinimizer.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt2.pri +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt16.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt8.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt64.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt16.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt1.pri +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt32.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/Integer.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt2.pri +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt128.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/FastMinimizer.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Cell.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionFile.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Storage.tpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionHDF5.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageTools.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageHDF5.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageFile.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionHDF5Patch.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageTools.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Storage.tpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionHDF5.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Storage.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageHDF5.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Cell.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/api -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/api/ICell.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BagPartition.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BooPHF.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/Bloom.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BagFile.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/CollectionCache.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/ContainerSet.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/IteratorFile.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/MapMPHF.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BagCache.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/Hash16.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/IterableHelpers.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/OAHash.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/CollectionAbstract.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BloomGroup.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/api --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/api/Container.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/api/Iterable.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/api/Collection.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/api/Bag.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/DnaCoder.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/Leon.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/CompressionUtils.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/HeaderCoder.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/Leon.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/DnaCoder.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/RangeCoder.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/IteratorHelpers.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/Observer.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/Command.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/ICommand.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/IObserver.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/Iterator.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BloomBuilder.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorProxy.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/PartitionsCommand.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/RepartitionAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Configuration.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessor.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Sequence2SuperKmer.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/PartiInfo.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Model.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorSolidity.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BankKmers.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithm.pri +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Model.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BankKmerIterator.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/SortingCountAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorSolidity.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorChain.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BloomAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomMinimizerAlgorithm.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Sequence2SuperKmer.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/MPHFAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/ConfigurationAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorHistogram.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorProxy.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BloomBuilder.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/PartiInfo.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithmFactory.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomMinimizerAlgorithm.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/LinearCounter.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Model.pri --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BankKmerIterator.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorChain.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorCutoff.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorAbstract.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/ConfigurationAlgorithm.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Configuration.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorDump.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithmFactory.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorAbstract.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorHistogram.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessor.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithm.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorCutoff.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/RepartitionAlgorithm.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithm.pri -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/api --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/api/IModel.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/api/ICountProcessor.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/System.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/ThreadLinux.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/MemoryCommon.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemLinux.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/TimeCommon.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemCommon.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemMacos.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/SystemInfoCommon.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/ThreadMacos.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/Exception.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ISystemInfo.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ITime.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ISmartPointer.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/types.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IMemory.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IFileSystem.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IThread.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/config_sha1.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/BranchingAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/GraphUnitigs.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Graph.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/LinkTigs.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/UnitigsConstructionAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Frontline.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/dag_vector.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/ContainerNode.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/NodesDeleter.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/ExtremityInfo.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Traversal.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/rank_vector.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Terminator.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Simplifications.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/IterativeExtensions.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/api --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/api/IContainerNode.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2 --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/unionFind.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/ThreadPool.h --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/binSeq.h --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/ograph.h --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/bglue_algo.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/ographBin.h --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/logging.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/bcalm_algo.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/gatb_core.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankAlbum.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/Alphabet.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankRandom.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/Banks.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankHelpers.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankSplitter.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankConverterAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankBinary.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/AbstractBank.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankComposite.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/Bank.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankFasta.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankStrings.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api/Sequence.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api/IBank.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api/IAlphabet.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/api/IModel.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/config.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test/gatb-core-cppunit -- Set runtime path of "/build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test/gatb-core-cppunit" to "" -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon1.fastq.leon-ref --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/album.txt --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1_list_ids.txt --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample.fastq --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/README.md --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon1.fastq +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample1.fa -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample.fastq.gz --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/query.fa --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/celegans_reads.h5 --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/query.fa.gz --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads2.fa --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample2.fa +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon1.fastq -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1.fa.gz --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample1.fa.gz -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1.fa --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon2.fastq --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample1.fa --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/microsnp.fa -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon2.fastq.leon-ref +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample1.fa.gz +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/query.fa.gz +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/celegans_reads.h5 +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/query.fa -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads3.fa.gz +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample.fastq +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/album.txt +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1_list_ids.txt +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/microsnp.fa +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/README.md +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample2.fa +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon2.fastq +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads2.fa +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon1.fastq.leon-ref -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/dbgh5 -- Set runtime path of "/build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/dbgh5" to "" -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/dbginfo @@ -4269,27 +4304,27 @@ dh_strip -a -O--sourcedirectory=gatb-core dh_makeshlibs -a -O--sourcedirectory=gatb-core dh_shlibdeps -a -O--sourcedirectory=gatb-core -dpkg-shlibdeps: warning: symbol H5Sget_simple_extent_dims used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Fcreate used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol gzprintf used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol gzopen used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Aread used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Pcreate used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol gzrewind used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Dread used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Fclose used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol inflateEnd used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5T_NATIVE_UINT16_g used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol deflate used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Pset_chunk used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Gopen2 used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Sselect_hyperslab used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Aread used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol deflateInit_ used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol gzerror used by debian/libgatbcore3/usr/lib/i386-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: 58 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--sourcedirectory=gatb-core dh_gencontrol -O--sourcedirectory=gatb-core dh_md5sums -O--sourcedirectory=gatb-core dh_builddeb -O--sourcedirectory=gatb-core -dpkg-deb: building package 'gatb-core-dbgsym' in '../gatb-core-dbgsym_1.4.2+dfsg-6_i386.deb'. -dpkg-deb: building package 'gatb-core' in '../gatb-core_1.4.2+dfsg-6_i386.deb'. -dpkg-deb: building package 'libgatbcore-dev' in '../libgatbcore-dev_1.4.2+dfsg-6_i386.deb'. dpkg-deb: building package 'gatb-core-testdata' in '../gatb-core-testdata_1.4.2+dfsg-6_all.deb'. -dpkg-deb: building package 'libgatbcore3' in '../libgatbcore3_1.4.2+dfsg-6_i386.deb'. +dpkg-deb: building package 'gatb-core' in '../gatb-core_1.4.2+dfsg-6_i386.deb'. dpkg-deb: building package 'libgatbcore3-dbgsym' in '../libgatbcore3-dbgsym_1.4.2+dfsg-6_i386.deb'. +dpkg-deb: building package 'gatb-core-dbgsym' in '../gatb-core-dbgsym_1.4.2+dfsg-6_i386.deb'. +dpkg-deb: building package 'libgatbcore3' in '../libgatbcore3_1.4.2+dfsg-6_i386.deb'. +dpkg-deb: building package 'libgatbcore-dev' in '../libgatbcore-dev_1.4.2+dfsg-6_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../gatb-core_1.4.2+dfsg-6_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -4297,12 +4332,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/119243/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/119243/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/22153 and its subdirectories -I: Current time: Sun Jan 14 12:15:48 -12 2024 -I: pbuilder-time-stamp: 1705277748 +I: removing directory /srv/workspace/pbuilder/119243 and its subdirectories +I: Current time: Sun Feb 16 21:03:07 +14 2025 +I: pbuilder-time-stamp: 1739689387