Diff of the two buildlogs: -- --- b1/build.log 2024-01-13 03:08:21.325085284 +0000 +++ b2/build.log 2024-01-13 03:15:31.145744943 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Feb 13 21:29:21 -12 2025 -I: pbuilder-time-stamp: 1739525361 +I: Current time: Sat Jan 13 17:08:27 +14 2024 +I: pbuilder-time-stamp: 1705115307 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: copying [./htslib_1.11-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.FUqskvvb/trustedkeys.kbx': General error +gpgv: keyblock resource '/tmp/dpkg-verify-sig.NhNeiOVh/trustedkeys.kbx': General error gpgv: Signature made Sat Jan 2 15:28:47 2021 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key @@ -36,51 +36,82 @@ dpkg-source: info: applying 273c5e76a1694aa2a13fd51c133abed2ef8ab4d3.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/113015/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/12124/tmp/hooks/D01_modify_environment starting +debug: Running on ionos2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 13 03:08 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/12124/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/12124/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=7 ' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='ab8fd2d20a864710aab63c43414282d4' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='113015' - PS1='# ' - PS2='> ' + INVOCATION_ID=3c966b3649b44b7999c51acb75f6d2b1 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=12124 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Nf2ZmTpK/pbuilderrc_SvLC --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Nf2ZmTpK/b1 --logfile b1/build.log htslib_1.11-4.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Nf2ZmTpK/pbuilderrc_eFDr --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Nf2ZmTpK/b2 --logfile b2/build.log htslib_1.11-4.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos6-i386 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-17-686-pae #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) i686 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Mar 27 2022 bash @@ -140,7 +171,7 @@ -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Feb 8 15:47 sh -> dash + lrwxrwxrwx 1 root root 9 Jan 13 03:08 sh -> /bin/bash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Jan 20 2022 su @@ -166,7 +197,7 @@ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew -I: user script /srv/workspace/pbuilder/113015/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/12124/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -264,7 +295,7 @@ Get: 46 http://deb.debian.org/debian bullseye/main i386 liblzma-dev i386 5.2.5-2.1~deb11u1 [240 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 libssl-dev i386 1.1.1w-0+deb11u1 [1852 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2+deb11u2 [194 kB] -Fetched 22.9 MB in 0s (81.2 MB/s) +Fetched 22.9 MB in 2s (10.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17763 files and directories currently installed.) @@ -472,7 +503,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/htslib-1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../htslib_1.11-4_source.changes +I: user script /srv/workspace/pbuilder/12124/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/12124/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/htslib-1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../htslib_1.11-4_source.changes dpkg-buildpackage: info: source package htslib dpkg-buildpackage: info: source version 1.11-4 dpkg-buildpackage: info: source distribution unstable @@ -486,7 +521,7 @@ make[1]: Entering directory '/build/reproducible-path/htslib-1.11' dh_auto_clean install -d /build/reproducible-path/htslib-1.11/debian/.debhelper/generated/_source/home - make -j16 distclean + make -j7 distclean make[2]: Entering directory '/build/reproducible-path/htslib-1.11' rm -f test/*.tmp test/*.tmp.* test/longrefs/*.tmp.* test/tabix/*.tmp.* test/tabix/FAIL* header-exports.txt shlib-exports-so.txt rm -f libhts.so libhts.so.* @@ -603,7 +638,7 @@ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" \ PACKAGE_VERSION="1.11-4" \ libdir=/usr/lib/i386-linux-gnu - make -j16 "CFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.11-4 libdir=/usr/lib/i386-linux-gnu + make -j7 "CFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.11-4 libdir=/usr/lib/i386-linux-gnu make[2]: Entering directory '/build/reproducible-path/htslib-1.11' gcc -g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c gcc -g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o knetfile.o knetfile.c @@ -715,9 +750,9 @@ sed -n '/^static_libs=/s/[^=]*=/HTSLIB_static_LIBS = /p;/^static_ldflags=/s/[^=]*=/HTSLIB_static_LDFLAGS = /p' htslib.pc.tmp > htslib_static.mk sed -e 's#@-includedir@#'`pwd`'#g;s#@-libdir@#'`pwd`'#g' htslib.pc.tmp > htslib-uninstalled.pc gcc -g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c +gcc -shared -Wl,-soname,libhts.so.3 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o libhts.so kfunc.pico knetfile.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hfile_net.pico hts.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_samtools.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/rANS_static.pico cram/string_alloc.pico plugin.pico -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/hts_endian test/hts_endian.o -ldeflate -llzma -lbz2 -lz -lm -ldl gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/plugins-dlhts test/plugins-dlhts.o -ldeflate -llzma -lbz2 -lz -lm -ldl -gcc -shared -Wl,-soname,libhts.so.3 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o libhts.so kfunc.pico knetfile.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hfile_net.pico hts.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_samtools.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/rANS_static.pico cram/string_alloc.pico plugin.pico -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/string_alloc.o plugin.o ranlib libhts.a gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o bgzip bgzip.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread @@ -739,8 +774,8 @@ gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-bcf-sr test/test-bcf-sr.o libhts.a -lz -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-bcf-translate test/test-bcf-translate.o libhts.a -lz -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread -gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-parse-reg test/test-parse-reg.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread ln -sf libhts.so libhts.so.3 +gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-parse-reg test/test-parse-reg.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o hfile_libcurl.so hfile_libcurl.pico libhts.so -ldeflate -llzma -lbz2 -lz -lm -ldl -lcurl -lpthread gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o hfile_gcs.so hfile_gcs.pico libhts.so -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o hfile_s3.so hfile_s3.pico libhts.so -ldeflate -llzma -lbz2 -lz -lm -ldl -lcrypto -lpthread @@ -760,7 +795,7 @@ if find . -name "FAIL*" > /dev/null ; then \ for file in $(find . -name "FAIL*"); do echo ${file}; cat ${file}; done && false ; \ fi - make -j16 test VERBOSE=1 "CFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.11-4 libdir=/usr/lib/i386-linux-gnu + make -j7 test VERBOSE=1 "CFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.11-4 libdir=/usr/lib/i386-linux-gnu make[2]: Entering directory '/build/reproducible-path/htslib-1.11' test/hts_endian test/test_kfunc @@ -843,139 +878,139 @@ bgzip -b -I 4 threads: .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -l 0 -b -m 14 -x /tmp/AfpkuAgc_l/index.bam.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/AfpkuAgc_l/index.bam + /build/reproducible-path/htslib-1.11/test/test_view -l 0 -b -m 14 -x /tmp/o4gnzqWMBj/index.bam.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/o4gnzqWMBj/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/AfpkuAgc_l/index.bam + /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/o4gnzqWMBj/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -l 0 -b -m 0 -x /tmp/AfpkuAgc_l/index.bam.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/AfpkuAgc_l/index.bam + /build/reproducible-path/htslib-1.11/test/test_view -l 0 -b -m 0 -x /tmp/o4gnzqWMBj/index.bam.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/o4gnzqWMBj/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/AfpkuAgc_l/index.bam + /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/o4gnzqWMBj/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 14 -x /tmp/AfpkuAgc_l/index.sam.gz.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/AfpkuAgc_l/index.sam.gz + /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 14 -x /tmp/o4gnzqWMBj/index.sam.gz.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/o4gnzqWMBj/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/AfpkuAgc_l/index.sam.gz + /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/o4gnzqWMBj/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 0 -x /tmp/AfpkuAgc_l/index.sam.gz.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/AfpkuAgc_l/index.sam.gz + /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 0 -x /tmp/o4gnzqWMBj/index.sam.gz.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/o4gnzqWMBj/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/AfpkuAgc_l/index.sam.gz + /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/o4gnzqWMBj/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -l 0 -C -x /tmp/AfpkuAgc_l/index.cram.crai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/AfpkuAgc_l/index.cram + /build/reproducible-path/htslib-1.11/test/test_view -l 0 -C -x /tmp/o4gnzqWMBj/index.cram.crai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/o4gnzqWMBj/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index /tmp/AfpkuAgc_l/index.cram + /build/reproducible-path/htslib-1.11/test/test_index /tmp/o4gnzqWMBj/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -l 0 -b -m 14 -x /tmp/AfpkuAgc_l/index.bcf.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/AfpkuAgc_l/index.bcf + /build/reproducible-path/htslib-1.11/test/test_view -l 0 -b -m 14 -x /tmp/o4gnzqWMBj/index.bcf.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/o4gnzqWMBj/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/AfpkuAgc_l/index.bcf + /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/o4gnzqWMBj/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 14 -x /tmp/AfpkuAgc_l/index.vcf.gz.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/AfpkuAgc_l/index.vcf.gz + /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 14 -x /tmp/o4gnzqWMBj/index.vcf.gz.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/o4gnzqWMBj/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/AfpkuAgc_l/index.vcf.gz + /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/o4gnzqWMBj/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 0 -x /tmp/AfpkuAgc_l/index.vcf.gz.tbi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/AfpkuAgc_l/index.vcf.gz + /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 0 -x /tmp/o4gnzqWMBj/index.vcf.gz.tbi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/o4gnzqWMBj/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -t /tmp/AfpkuAgc_l/index.vcf.gz + /build/reproducible-path/htslib-1.11/test/test_index -t /tmp/o4gnzqWMBj/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/tabix /tmp/AfpkuAgc_l/index.vcf.gz##idx##/tmp/AfpkuAgc_l/index.vcf.gz.tbi 1:10000060-10000060 + /build/reproducible-path/htslib-1.11/tabix /tmp/o4gnzqWMBj/index.vcf.gz##idx##/tmp/o4gnzqWMBj/index.vcf.gz.tbi 1:10000060-10000060 .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -b -m 14 -x /tmp/AfpkuAgc_l/index.bam.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/AfpkuAgc_l/index.bam + /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -b -m 14 -x /tmp/o4gnzqWMBj/index.bam.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/o4gnzqWMBj/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/AfpkuAgc_l/index.bam + /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/o4gnzqWMBj/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -b -m 0 -x /tmp/AfpkuAgc_l/index.bam.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/AfpkuAgc_l/index.bam + /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -b -m 0 -x /tmp/o4gnzqWMBj/index.bam.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/o4gnzqWMBj/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/AfpkuAgc_l/index.bam + /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/o4gnzqWMBj/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 14 -x /tmp/AfpkuAgc_l/index.sam.gz.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/AfpkuAgc_l/index.sam.gz + /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 14 -x /tmp/o4gnzqWMBj/index.sam.gz.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/o4gnzqWMBj/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/AfpkuAgc_l/index.sam.gz + /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/o4gnzqWMBj/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 0 -x /tmp/AfpkuAgc_l/index.sam.gz.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/AfpkuAgc_l/index.sam.gz + /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 0 -x /tmp/o4gnzqWMBj/index.sam.gz.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/o4gnzqWMBj/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/AfpkuAgc_l/index.sam.gz + /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/o4gnzqWMBj/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -C -x /tmp/AfpkuAgc_l/index.cram.crai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/AfpkuAgc_l/index.cram + /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -C -x /tmp/o4gnzqWMBj/index.cram.crai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/o4gnzqWMBj/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index /tmp/AfpkuAgc_l/index.cram + /build/reproducible-path/htslib-1.11/test/test_index /tmp/o4gnzqWMBj/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -b -m 14 -x /tmp/AfpkuAgc_l/index.bcf.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/AfpkuAgc_l/index.bcf + /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -b -m 14 -x /tmp/o4gnzqWMBj/index.bcf.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/o4gnzqWMBj/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/AfpkuAgc_l/index.bcf + /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/o4gnzqWMBj/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 14 -x /tmp/AfpkuAgc_l/index.vcf.gz.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/AfpkuAgc_l/index.vcf.gz + /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 14 -x /tmp/o4gnzqWMBj/index.vcf.gz.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/o4gnzqWMBj/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/AfpkuAgc_l/index.vcf.gz + /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/o4gnzqWMBj/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 0 -x /tmp/AfpkuAgc_l/index.vcf.gz.tbi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/AfpkuAgc_l/index.vcf.gz + /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 0 -x /tmp/o4gnzqWMBj/index.vcf.gz.tbi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/o4gnzqWMBj/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -t /tmp/AfpkuAgc_l/index.vcf.gz + /build/reproducible-path/htslib-1.11/test/test_index -t /tmp/o4gnzqWMBj/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/tabix /tmp/AfpkuAgc_l/index.vcf.gz##idx##/tmp/AfpkuAgc_l/index.vcf.gz.tbi 1:10000060-10000060 + /build/reproducible-path/htslib-1.11/tabix /tmp/o4gnzqWMBj/index.vcf.gz##idx##/tmp/o4gnzqWMBj/index.vcf.gz.tbi 1:10000060-10000060 .. ok test_view testing multi-ref CRAM modes: @@ -3060,9 +3095,9 @@ .. ok test_vcf_api: - /build/reproducible-path/htslib-1.11/test/test-vcf-api /tmp/AfpkuAgc_l/test-vcf-api.bcf + /build/reproducible-path/htslib-1.11/test/test-vcf-api /tmp/o4gnzqWMBj/test-vcf-api.bcf [E::bcf_index_build3] TBI indices for BCF files are not supported -[E::idx_find_and_load] Could not retrieve index file for '/tmp/AfpkuAgc_l/test-vcf-api.bcf' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/o4gnzqWMBj/test-vcf-api.bcf' .. ok test_bcf2vcf: @@ -3070,7 +3105,7 @@ .. ok test_vcf_sweep: - /build/reproducible-path/htslib-1.11/test/test-vcf-sweep /tmp/AfpkuAgc_l/test-vcf-api.bcf + /build/reproducible-path/htslib-1.11/test/test-vcf-sweep /tmp/o4gnzqWMBj/test-vcf-api.bcf .. ok test_vcf_various: @@ -3090,43 +3125,43 @@ .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/AfpkuAgc_l -s 493737710 + /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/o4gnzqWMBj -s 501059974 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/AfpkuAgc_l -s 1567990729 + /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/o4gnzqWMBj -s 116752042 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/AfpkuAgc_l -s 47965804 + /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/o4gnzqWMBj -s 1375153075 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/AfpkuAgc_l -s 1493897368 + /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/o4gnzqWMBj -s 1692094740 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/AfpkuAgc_l -s 770432338 + /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/o4gnzqWMBj -s 556819428 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/AfpkuAgc_l -s 668822764 + /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/o4gnzqWMBj -s 819463073 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/AfpkuAgc_l -s 1512378202 + /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/o4gnzqWMBj -s 231505510 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/AfpkuAgc_l -s 1646354548 + /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/o4gnzqWMBj -s 555755195 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/AfpkuAgc_l -s 1019229230 + /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/o4gnzqWMBj -s 1573826449 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/AfpkuAgc_l -s 533240866 + /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/o4gnzqWMBj -s 1083054300 .. ok test_command: @@ -3134,15 +3169,15 @@ .. ok test_convert_padded_header: - /build/reproducible-path/htslib-1.11/test/test_view -t ce.fa -C /tmp/AfpkuAgc_l/headernul0.bam + /build/reproducible-path/htslib-1.11/test/test_view -t ce.fa -C /tmp/o4gnzqWMBj/headernul0.bam .. ok test_convert_padded_header: - /build/reproducible-path/htslib-1.11/test/test_view -t ce.fa -C /tmp/AfpkuAgc_l/headernul1.bam + /build/reproducible-path/htslib-1.11/test/test_view -t ce.fa -C /tmp/o4gnzqWMBj/headernul1.bam .. ok test_convert_padded_header: - /build/reproducible-path/htslib-1.11/test/test_view -t ce.fa -C /tmp/AfpkuAgc_l/headernul678.bam + /build/reproducible-path/htslib-1.11/test/test_view -t ce.fa -C /tmp/o4gnzqWMBj/headernul678.bam .. ok test_rebgzip: Alternate zlib/deflate library detected @@ -3197,7 +3232,7 @@ failed .. 0 make[2]: Leaving directory '/build/reproducible-path/htslib-1.11' - rm -fr -- /tmp/dh-xdg-rundir-lTLMOmmu + rm -fr -- /tmp/dh-xdg-rundir-jO6sc84M make[1]: Leaving directory '/build/reproducible-path/htslib-1.11' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_test-indep @@ -3221,7 +3256,7 @@ PACKAGE_VERSION="1.11-4" \ libdir=/usr/lib/i386-linux-gnu install -d /build/reproducible-path/htslib-1.11/debian/tmp - make -j16 install DESTDIR=/build/reproducible-path/htslib-1.11/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.11-4 libdir=/usr/lib/i386-linux-gnu + make -j7 install DESTDIR=/build/reproducible-path/htslib-1.11/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.11-4 libdir=/usr/lib/i386-linux-gnu make[2]: Entering directory '/build/reproducible-path/htslib-1.11' mkdir -p -m 755 /build/reproducible-path/htslib-1.11/debian/tmp/usr/bin /build/reproducible-path/htslib-1.11/debian/tmp/usr/include /build/reproducible-path/htslib-1.11/debian/tmp/usr/include/htslib /build/reproducible-path/htslib-1.11/debian/tmp/usr/lib/i386-linux-gnu /build/reproducible-path/htslib-1.11/debian/tmp/usr/share/man/man1 /build/reproducible-path/htslib-1.11/debian/tmp/usr/share/man/man5 /build/reproducible-path/htslib-1.11/debian/tmp/usr/share/man/man7 /build/reproducible-path/htslib-1.11/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig if test -n "/htslib"; then mkdir -p -m 755 /build/reproducible-path/htslib-1.11/debian/tmp/htslib; fi @@ -3302,12 +3337,12 @@ debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/htslib-1.11' dh_installchangelogs NEWS + install -p -m0644 debian/changelog debian/tabix/usr/share/doc/tabix/changelog.Debian + install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog install -p -m0644 debian/changelog debian/libhts3/usr/share/doc/libhts3/changelog.Debian install -p -m0644 NEWS debian/libhts3/usr/share/doc/libhts3/changelog install -p -m0644 debian/changelog debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog - install -p -m0644 debian/changelog debian/tabix/usr/share/doc/tabix/changelog.Debian - install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog install -p -m0644 debian/changelog debian/htslib-test/usr/share/doc/htslib-test/changelog.Debian install -p -m0644 NEWS debian/htslib-test/usr/share/doc/htslib-test/changelog make[1]: Leaving directory '/build/reproducible-path/htslib-1.11' @@ -3320,25 +3355,25 @@ install -p -m0644 ./bgzip.1 debian/tabix/usr/share/man/man1/bgzip.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man5/faidx.5 man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man5/sam.5 - man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man5/vcf.5 man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 - man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/bgzip.1 man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/htsfile.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/bgzip.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man5/vcf.5 man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/tabix.1 - mv debian/libhts3/usr/share/man/man5/faidx.5.dh-new debian/libhts3/usr/share/man/man5/faidx.5 - chmod 0644 -- debian/libhts3/usr/share/man/man5/faidx.5 mv debian/libhts3/usr/share/man/man5/sam.5.dh-new debian/libhts3/usr/share/man/man5/sam.5 chmod 0644 -- debian/libhts3/usr/share/man/man5/sam.5 - mv debian/libhts3/usr/share/man/man5/vcf.5.dh-new debian/libhts3/usr/share/man/man5/vcf.5 - chmod 0644 -- debian/libhts3/usr/share/man/man5/vcf.5 - mv debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7.dh-new debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 - chmod 0644 -- debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 - mv debian/tabix/usr/share/man/man1/bgzip.1.dh-new debian/tabix/usr/share/man/man1/bgzip.1 - chmod 0644 -- debian/tabix/usr/share/man/man1/bgzip.1 mv debian/tabix/usr/share/man/man1/htsfile.1.dh-new debian/tabix/usr/share/man/man1/htsfile.1 chmod 0644 -- debian/tabix/usr/share/man/man1/htsfile.1 + mv debian/libhts3/usr/share/man/man5/faidx.5.dh-new debian/libhts3/usr/share/man/man5/faidx.5 + chmod 0644 -- debian/libhts3/usr/share/man/man5/faidx.5 mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 chmod 0644 -- debian/tabix/usr/share/man/man1/tabix.1 + mv debian/tabix/usr/share/man/man1/bgzip.1.dh-new debian/tabix/usr/share/man/man1/bgzip.1 + chmod 0644 -- debian/tabix/usr/share/man/man1/bgzip.1 + mv debian/libhts3/usr/share/man/man5/vcf.5.dh-new debian/libhts3/usr/share/man/man5/vcf.5 + chmod 0644 -- debian/libhts3/usr/share/man/man5/vcf.5 + mv debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7.dh-new debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 + chmod 0644 -- debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 dh_lintian install -d debian/htslib-test/usr/share/lintian/overrides install -p -m0644 debian/htslib-test.lintian-overrides debian/htslib-test/usr/share/lintian/overrides/htslib-test @@ -3354,18 +3389,18 @@ ln -s tabix.1.gz debian/tabix/usr/share/man/man1/bgzip.1.gz dh_strip_nondeterminism dh_compress + cd debian/htslib-test cd debian/libhts3 cd debian/libhts-dev - cd debian/htslib-test cd debian/tabix - chmod a-x usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 chmod a-x usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian - chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 - gzip -9nf usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 + chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian + chmod a-x usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 gzip -9nf usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 + gzip -9nf usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 cd '/build/reproducible-path/htslib-1.11' cd '/build/reproducible-path/htslib-1.11' cd '/build/reproducible-path/htslib-1.11' @@ -3378,25 +3413,25 @@ find debian/libhts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/htslib-test ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s + find debian/htslib-test/usr/share/doc -type f -a -true -a ! -regex 'debian/htslib-test/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts3/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/htslib-test/usr/share/doc -type f -a -true -a ! -regex 'debian/htslib-test/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libhts3/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/htslib-test/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libhts3/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libhts3/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/htslib-test/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libhts3 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/htslib-test -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libhts3/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w + find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libhts3 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/libhts3/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w - find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian -name simple_test_driver.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/build/reproducible-path/htslib-1.11' rm -f debian/htslib-test.debhelper.log debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log @@ -3419,10 +3454,10 @@ make[1]: Entering directory '/build/reproducible-path/htslib-1.11' # This is apparently important for the interpretation by ldc2 in sambamba dh_strip -Xlibhts.a - install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/3b - objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/i386-linux-gnu/libhts.so.1.11-4 debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/3b/f94b62cfa420cdbd0c9f6521965c11cb53f156.debug install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b5 objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b5/53a7bba9c3edd87daf607e9a2c6612d3fa433f.debug + install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/3b + objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/i386-linux-gnu/libhts.so.1.11-4 debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/3b/f94b62cfa420cdbd0c9f6521965c11cb53f156.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b5/53a7bba9c3edd87daf607e9a2c6612d3fa433f.debug strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b5/53a7bba9c3edd87daf607e9a2c6612d3fa433f.debug debian/tabix/usr/bin/htsfile @@ -3441,27 +3476,27 @@ chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/72/a6656120de41c8f0ce2c2e3fed48892a2da64a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_gcs.so objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/72/a6656120de41c8f0ce2c2e3fed48892a2da64a.debug debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_gcs.so - install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/6e - objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/6e/f8ae7cc8ecf4492d1975fb230dbbf395ab0cc0.debug - chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/6e/f8ae7cc8ecf4492d1975fb230dbbf395ab0cc0.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so - objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/6e/f8ae7cc8ecf4492d1975fb230dbbf395ab0cc0.debug debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/22 objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_libcurl.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/22/eb0fc19a7751073d9eda7c53aff44329c542b1.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/22/eb0fc19a7751073d9eda7c53aff44329c542b1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_libcurl.so objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/22/eb0fc19a7751073d9eda7c53aff44329c542b1.debug debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_libcurl.so + chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/8a/a4dc10705d8e8b7f00ac0e11c3e4a5c97b3533.debug + strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix + install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/6e + objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/6e/f8ae7cc8ecf4492d1975fb230dbbf395ab0cc0.debug + objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/8a/a4dc10705d8e8b7f00ac0e11c3e4a5c97b3533.debug debian/tabix/usr/bin/tabix + chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/6e/f8ae7cc8ecf4492d1975fb230dbbf395ab0cc0.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so + objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/6e/f8ae7cc8ecf4492d1975fb230dbbf395ab0cc0.debug debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libhts3/usr/lib/debug/.dwz/i386-linux-gnu debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.dwz + install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/61 + objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/61/81a5163a7add8c25ece260135727cc38f153f5.debug rm -fr debian/libhts3/usr/lib/debug/.dwz - chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/8a/a4dc10705d8e8b7f00ac0e11c3e4a5c97b3533.debug - strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix rmdir -p --ignore-fail-on-non-empty debian/libhts3/usr/lib/debug install -d debian/.debhelper/libhts3/dbgsym-root/usr/share/doc ln -s libhts3 debian/.debhelper/libhts3/dbgsym-root/usr/share/doc/libhts3-dbgsym - objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/8a/a4dc10705d8e8b7f00ac0e11c3e4a5c97b3533.debug debian/tabix/usr/bin/tabix - install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/61 - objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/61/81a5163a7add8c25ece260135727cc38f153f5.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/61/81a5163a7add8c25ece260135727cc38f153f5.debug strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/61/81a5163a7add8c25ece260135727cc38f153f5.debug debian/tabix/usr/bin/bgzip @@ -3482,7 +3517,7 @@ rm -f debian/libhts-dev/DEBIAN/shlibs rm -f debian/tabix/DEBIAN/shlibs dh_shlibdeps -a - dpkg-shlibdeps -Tdebian/libhts3.substvars debian/libhts3/usr/lib/i386-linux-gnu/libhts.so.1.11-4 debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_s3.so debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_gcs.so debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_libcurl.so + dpkg-shlibdeps -Tdebian/libhts3.substvars debian/libhts3/usr/lib/i386-linux-gnu/libhts.so.1.11-4 debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_s3.so debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_gcs.so debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_libcurl.so debian/libhts3/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so install -d debian/tabix/DEBIAN dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix debian/tabix/usr/bin/bgzip dh_installdeb @@ -3490,12 +3525,12 @@ install -d debian/libhts-dev/DEBIAN install -d debian/htslib-test/DEBIAN dh_gencontrol - echo misc:Depends= >> debian/libhts-dev.substvars - echo misc:Pre-Depends= >> debian/libhts-dev.substvars - dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -Pdebian/libhts-dev echo misc:Depends= >> debian/htslib-test.substvars echo misc:Pre-Depends= >> debian/htslib-test.substvars dpkg-gencontrol -phtslib-test -ldebian/changelog -Tdebian/htslib-test.substvars -Pdebian/htslib-test + echo misc:Depends= >> debian/libhts-dev.substvars + echo misc:Pre-Depends= >> debian/libhts-dev.substvars + dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -Pdebian/libhts-dev echo misc:Depends= >> debian/libhts3.substvars echo misc:Pre-Depends= >> debian/libhts3.substvars install -d debian/.debhelper/libhts3/dbgsym-root/DEBIAN @@ -3504,40 +3539,40 @@ echo misc:Pre-Depends= >> debian/tabix.substvars install -d debian/.debhelper/tabix/dbgsym-root/DEBIAN dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=tabix-dbgsym "-DDepends=tabix (= \${binary:Version})" "-DDescription=debug symbols for tabix" "-DBuild-Ids=6181a5163a7add8c25ece260135727cc38f153f5 8aa4dc10705d8e8b7f00ac0e11c3e4a5c97b3533 b553a7bba9c3edd87daf607e9a2c6612d3fa433f" -DSection=debug -UMulti-Arch -UReplaces -UBreaks - chmod 0644 -- debian/libhts-dev/DEBIAN/control chmod 0644 -- debian/htslib-test/DEBIAN/control + chmod 0644 -- debian/libhts-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/libhts3 chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/tabix - chmod 0644 -- debian/libhts3/DEBIAN/control chmod 0644 -- debian/tabix/DEBIAN/control + chmod 0644 -- debian/libhts3/DEBIAN/control dh_md5sums cd debian/libhts3 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libhts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/htslib-test >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts3/DEBIAN/md5sums chmod 0644 -- debian/tabix/DEBIAN/md5sums - cd debian/.debhelper/libhts3/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/tabix/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/md5sums + cd debian/.debhelper/libhts3/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums - chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/htslib-test/DEBIAN/md5sums + chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/md5sums + chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/libhts3 .. - dpkg-deb --root-owner-group --build debian/.debhelper/libhts3/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libhts-dev .. dpkg-deb --root-owner-group --build debian/htslib-test .. - dpkg-deb --root-owner-group --build debian/tabix .. + dpkg-deb --root-owner-group --build debian/.debhelper/libhts3/dbgsym-root .. dpkg-deb --root-owner-group --build debian/.debhelper/tabix/dbgsym-root .. -dpkg-deb: building package 'libhts3' in '../libhts3_1.11-4_i386.deb'. + dpkg-deb --root-owner-group --build debian/tabix .. +dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.11-4_i386.deb'. +dpkg-deb: building package 'htslib-test' in '../htslib-test_1.11-4_all.deb'. dpkg-deb: building package 'libhts-dev' in '../libhts-dev_1.11-4_i386.deb'. +dpkg-deb: building package 'libhts3' in '../libhts3_1.11-4_i386.deb'. dpkg-deb: building package 'libhts3-dbgsym' in '../libhts3-dbgsym_1.11-4_i386.deb'. -dpkg-deb: building package 'htslib-test' in '../htslib-test_1.11-4_all.deb'. dpkg-deb: building package 'tabix' in '../tabix_1.11-4_i386.deb'. -dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.11-4_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../htslib_1.11-4_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -3546,12 +3581,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/12124/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/12124/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/113015 and its subdirectories -I: Current time: Thu Feb 13 21:31:18 -12 2025 -I: pbuilder-time-stamp: 1739525478 +I: removing directory /srv/workspace/pbuilder/12124 and its subdirectories +I: Current time: Sat Jan 13 17:15:28 +14 2024 +I: pbuilder-time-stamp: 1705115728