Diff of the two buildlogs: -- --- b1/build.log 2021-06-23 18:22:57.081214303 +0000 +++ b2/build.log 2021-06-23 18:24:08.498527598 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Jun 23 06:11:11 -12 2021 -I: pbuilder-time-stamp: 1624471871 +I: Current time: Wed Jul 27 14:45:58 +14 2022 +I: pbuilder-time-stamp: 1658882758 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./hyphy_2.5.28+dfsg-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.gQIxhFu7/trustedkeys.kbx': General error -gpgv: Signature made Tue Mar 16 20:41:39 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.lLd4g3LG/trustedkeys.kbx': General error +gpgv: Signature made Wed Mar 17 22:41:39 2021 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./hyphy_2.5.28+dfsg-3.dsc @@ -31,137 +31,171 @@ dpkg-source: info: applying spelling I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/10130/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/10933/tmp/hooks/D01_modify_environment starting +debug: Running on ionos16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/10933/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/10933/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='9da37faf8f9744d99afd08bc60e46ba7' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='10130' - PS1='# ' - PS2='> ' + INVOCATION_ID=29ed7aafb9cb4b1c8535cec2e593e623 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=10933 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.pVcwzHrhBV/pbuilderrc_SC8k --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.pVcwzHrhBV/b1 --logfile b1/build.log hyphy_2.5.28+dfsg-3.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.pVcwzHrhBV/pbuilderrc_PIoC --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.pVcwzHrhBV/b2 --logfile b2/build.log --extrapackages usrmerge hyphy_2.5.28+dfsg-3.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos2-i386 4.19.0-17-686-pae #1 SMP Debian 4.19.194-1 (2021-06-10) i686 GNU/Linux + Linux i-capture-the-hostname 4.19.0-17-amd64 #1 SMP Debian 4.19.194-1 (2021-06-10) x86_64 GNU/Linux I: ls -l /bin - total 5856 - -rwxr-xr-x 1 root root 1367848 Jun 21 14:25 bash - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat - -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown - -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp - -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash - -rwxr-xr-x 1 root root 124904 Sep 22 2020 date - -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd - -rwxr-xr-x 1 root root 100752 Sep 22 2020 df - -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir - -rwxr-xr-x 1 root root 83644 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 34664 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 71928 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 30112 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 100952 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln - -rwxr-xr-x 1 root root 55572 Feb 7 2020 login - -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls - -rwxr-xr-x 1 root root 153124 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 58920 Feb 7 02:38 more - -rwsr-xr-x 1 root root 50720 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 13856 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:25 rbash -> bash - -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm - -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jun 21 22:20 sh -> dash - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty - -rwsr-xr-x 1 root root 79396 Feb 7 02:38 su - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync - -rwxr-xr-x 1 root root 602584 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch - -rwxr-xr-x 1 root root 34664 Sep 22 2020 true - -rwxr-xr-x 1 root root 17768 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 63024 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/10130/tmp/hooks/D02_print_environment finished + total 5776 + -rwxr-xr-x 1 root root 1367848 Jun 22 2021 bash + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat + -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown + -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp + -rwxr-xr-x 1 root root 128724 Dec 11 2020 dash + -rwxr-xr-x 1 root root 124904 Sep 23 2020 date + -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd + -rwxr-xr-x 1 root root 100752 Sep 23 2020 df + -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir + -rwxr-xr-x 1 root root 83644 Feb 8 2021 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 34664 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 71928 Feb 8 2021 findmnt + -rwsr-xr-x 1 root root 30112 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 100952 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln + -rwxr-xr-x 1 root root 55572 Feb 8 2020 login + -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls + -rwxr-xr-x 1 root root 153124 Feb 8 2021 lsblk + -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 58920 Feb 8 2021 more + -rwsr-xr-x 1 root root 50720 Feb 8 2021 mount + -rwxr-xr-x 1 root root 13856 Feb 8 2021 mountpoint + -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 2021 rbash -> bash + -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm + -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 27 14:46 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 26 05:46 sh.distrib -> dash + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty + -rwsr-xr-x 1 root root 79396 Feb 8 2021 su + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync + -rwxr-xr-x 1 root root 602584 Feb 17 2021 tar + -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch + -rwxr-xr-x 1 root root 34664 Sep 23 2020 true + -rwxr-xr-x 1 root root 17768 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Feb 8 2021 umount + -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 63024 Feb 8 2021 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/10933/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -320,7 +354,7 @@ Get: 106 http://deb.debian.org/debian bullseye/main i386 libssl-dev i386 1.1.1k-1 [1841 kB] Get: 107 http://deb.debian.org/debian bullseye/main i386 mpi-default-dev i386 1.13 [5476 B] Get: 108 http://deb.debian.org/debian bullseye/main i386 pkg-config i386 0.29.2-1 [66.3 kB] -Fetched 59.2 MB in 15s (4022 kB/s) +Fetched 59.2 MB in 1s (92.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) @@ -772,8 +806,44 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main i386 libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main i386 libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main i386 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (5195 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 28361 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/hyphy-2.5.28+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/hyphy-2.5.28+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package hyphy dpkg-buildpackage: info: source version 2.5.28+dfsg-3 dpkg-buildpackage: info: source distribution unstable @@ -783,9 +853,9 @@ debian/rules clean dh clean --buildsystem=cmake debian/rules override_dh_auto_clean -make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.28+dfsg“ wird betreten dh_auto_clean -make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.28+dfsg“ wird verlassen dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary @@ -793,7 +863,7 @@ dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure -make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.28+dfsg“ wird betreten dh_auto_configure -- -DINSTALL_PREFIX=/usr -DNOAVX=ON -DNOSSE3=ON cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DINSTALL_PREFIX=/usr -DNOAVX=ON -DNOSSE3=ON .. -- The C compiler identification is GNU 10.2.1 @@ -836,9 +906,9 @@ -- Build files have been written to: /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu -make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.28+dfsg“ wird verlassen debian/rules override_dh_auto_build -make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.28+dfsg“ wird betreten # convert a few ISO-8859-1 files to address national-encoding set -e \ ; for file in res/TemplateBatchFiles/PARRIS.bf res/TemplateBatchFiles/TemplateModels/MEC.mdl res/TemplateBatchFiles/TemplateModels/models.lst \ @@ -846,69 +916,69 @@ ; mv "${file}.new" "${file}" \ ; done dh_auto_build -- MP MPI - cd obj-i686-linux-gnu && make -j10 "INSTALL=install --strip-program=true" MP MPI VERBOSE=1 -make[2]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' + cd obj-i686-linux-gnu && make -j18 "INSTALL=install --strip-program=true" MP MPI VERBOSE=1 +make[2]: Verzeichnis „/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu“ wird betreten /usr/bin/cmake -S/build/hyphy-2.5.28+dfsg -B/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 MP -make[3]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' +make[3]: Verzeichnis „/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu“ wird betreten /usr/bin/cmake -S/build/hyphy-2.5.28+dfsg -B/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles 20 make -f CMakeFiles/Makefile2 CMakeFiles/MP.dir/all -make[4]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' +make[4]: Verzeichnis „/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu“ wird betreten make -f CMakeFiles/hyphy.dir/build.make CMakeFiles/hyphy.dir/depend -make[5]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' +make[5]: Verzeichnis „/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu“ wird betreten cd /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hyphy-2.5.28+dfsg /build/hyphy-2.5.28+dfsg /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles/hyphy.dir/DependInfo.cmake --color= Dependee "/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles/hyphy.dir/DependInfo.cmake" is newer than depender "/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles/hyphy.dir/depend.internal". Dependee "/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles/hyphy.dir/depend.internal". Scanning dependencies of target hyphy -make[5]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' +make[5]: Verzeichnis „/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu“ wird verlassen make -f CMakeFiles/hyphy.dir/build.make CMakeFiles/hyphy.dir/build -make[5]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' -[ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/alignment.cpp.o +make[5]: Verzeichnis „/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu“ wird betreten [ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o -[ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllistx.cpp.o -[ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllist.cpp.o -[ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllistx_iterator.cpp.o -[ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o +[ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/alignment.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/_hyExecutionContext.cpp +[ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllistxl.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/hyphy.dir/src/core/alignment.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/alignment.cpp -[ 10%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllistxl.cpp.o +[ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllistx.cpp.o +[ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o +[ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllistx_iterator.cpp.o +[ 10%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllist.cpp.o +/usr/bin/c++ 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-I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/hyphy.dir/src/core/avllistxl_iterator.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/avllistxl_iterator.cpp -/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. 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-lcrypto -lcurl -lssl -lsqlite3 -lgomp -lpthread mklink HYPHYMP -> hyphy ln -sf hyphy HYPHYMP -make[5]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' +make[5]: Verzeichnis „/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu“ wird verlassen [100%] Built target hyphy make -f CMakeFiles/MP.dir/build.make CMakeFiles/MP.dir/depend -make[5]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' +make[5]: Verzeichnis „/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu“ wird betreten cd /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hyphy-2.5.28+dfsg /build/hyphy-2.5.28+dfsg /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles/MP.dir/DependInfo.cmake --color= Dependee "/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles/MP.dir/DependInfo.cmake" is newer than depender 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Dependee "/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles/MP.dir/depend.internal". 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-D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/avllist.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/avllist.cpp /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/avllistx.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/avllistx.cpp +[ 15%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/batchlan.cpp.o +[ 15%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/batchlan2.cpp.o +[ 15%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/batchlanhelpers.cpp.o +[ 15%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/baseobj.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib 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15%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/batchlanhelpers.cpp.o -[ 15%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/batchlan2.cpp.o +[ 20%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o +/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/batchlan.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/batchlan.cpp +[ 20%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/batchlan2.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/batchlan2.cpp +[ 20%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ 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-I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/nexus.cpp @@ -1117,10 +1187,10 @@ /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/string_file_wrapper.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/string_file_wrapper.cpp [ 65%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/strings.cpp -[ 65%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/time_difference.cpp.o -/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/time_difference.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/time_difference.cpp [ 70%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/topology.cpp +[ 70%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/time_difference.cpp.o +/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/time_difference.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/time_difference.cpp [ 70%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/translation_table.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/translation_table.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/translation_table.cpp [ 70%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/tree.cpp.o @@ -1160,35 +1230,35 @@ [100%] Linking CXX executable HYPHYMPI /usr/bin/cmake -E cmake_link_script CMakeFiles/HYPHYMPI.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -fsigned-char -O3 -std=c++14 -pthread -g CMakeFiles/HYPHYMPI.dir/src/core/_hyExecutionContext.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/alignment.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/associative_list.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllist.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllistx.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllistx_iterator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllistxl.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllistxl_iterator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/baseobj.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/batchlan.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/batchlan2.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/batchlanhelpers.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/batchlanruntime.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/calcnode.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/fisher_exact.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/formula.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/formula_parsing_context.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/fstring.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/global_things.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/hbl_env.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/ntuplestorage.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/operation.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/parser.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/parser2.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/polynoml.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/string_file_wrapper.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/time_difference.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/translation_table.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/tree.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/tree_evaluator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/tree_iterator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/trie_iterator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/variable.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/vector.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph2.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bgm.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bgm2.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o CMakeFiles/HYPHYMPI.dir/src/contrib/regex.cpp.o CMakeFiles/HYPHYMPI.dir/src/mains/unix.cpp.o -o HYPHYMPI -Wl,-rpath,/usr/lib/i386-linux-gnu/openmpi/lib: -ldl -lpthread -lcrypto -lcurl -lssl -lsqlite3 /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lgomp -lpthread -make[5]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' +make[5]: Verzeichnis „/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu“ wird verlassen [100%] Built target HYPHYMPI make -f CMakeFiles/MPI.dir/build.make CMakeFiles/MPI.dir/depend -make[5]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' +make[5]: Verzeichnis „/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu“ wird betreten cd /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hyphy-2.5.28+dfsg 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Scanning dependencies of target MPI -make[5]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' +make[5]: Verzeichnis „/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu“ wird verlassen make -f CMakeFiles/MPI.dir/build.make CMakeFiles/MPI.dir/build -make[5]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' -make[5]: Nothing to be done for 'CMakeFiles/MPI.dir/build'. -make[5]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' +make[5]: Verzeichnis „/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu“ wird betreten +make[5]: Für das Ziel „CMakeFiles/MPI.dir/build“ ist nichts zu tun. +make[5]: Verzeichnis „/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu“ wird verlassen [100%] Built target MPI -make[4]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' +make[4]: Verzeichnis „/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu“ wird verlassen /usr/bin/cmake -E cmake_progress_start /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles 0 -make[3]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' -make[2]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' -make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' +make[3]: Verzeichnis „/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu“ wird verlassen +make[2]: Verzeichnis „/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu“ wird verlassen +make[1]: Verzeichnis „/build/hyphy-2.5.28+dfsg“ wird verlassen debian/rules override_dh_auto_test -make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.28+dfsg“ wird betreten find "obj-i686-linux-gnu/" \ -not -path "*/CMakeFiles/*" \ -type f,l \ -executable \ -exec cp -v '{}' . \; +'obj-i686-linux-gnu/HYPHYMPI' -> './HYPHYMPI' 'obj-i686-linux-gnu/HYPHYMP' -> './HYPHYMP' 'obj-i686-linux-gnu/hyphy' -> './hyphy' -'obj-i686-linux-gnu/HYPHYMPI' -> './HYPHYMPI' ./run_unit_tests.sh ./tests/hbltests/UnitTests/HBLCommands/Abs.bf ./tests/hbltests/UnitTests/HBLCommands/Add.bf @@ -1292,520 +1362,520 @@ ./tests/hbltests/UnitTests/HBLCommands/libv3_utilityfunctions.bf ./tests/hbltests/UnitTests/HBLCommands/namespace.bf \n\n------------------------ALL TEST PASSED------------------------------------\n -make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.28+dfsg“ wird verlassen create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake - cd obj-i686-linux-gnu && make -j10 install DESTDIR=/build/hyphy-2.5.28\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" -make[1]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' + cd obj-i686-linux-gnu && make -j18 install DESTDIR=/build/hyphy-2.5.28\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" +make[1]: Verzeichnis „/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu“ wird betreten /usr/bin/cmake -S/build/hyphy-2.5.28+dfsg -B/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall -make[2]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' -make[2]: Nothing to be done for 'preinstall'. -make[2]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' +make[2]: Verzeichnis „/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu“ wird betreten +make[2]: Für das Ziel „preinstall“ ist nichts zu tun. +make[2]: Verzeichnis „/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu“ wird verlassen Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ascidian_mtDNA.cod +-- 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/build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/files.lst --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/selectModelParameters.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LRTRecombTest.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeDiNucData.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonToProtein.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TopologySearch.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSBivariateRateAnalysis.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_tipDater.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PARRIS.bf --- Installing: 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/build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/heuristicMethodNPBootstrap.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NeighborJoining.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGEmulator.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84P.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customF1x4.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94custom.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/BranchSiteTemplate.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/UniversalCode.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAA.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Default +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F3x4.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GRM.mdl +-- Installing: 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/build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones_F.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA_empirical.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/models.lst --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters3.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K3ST.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV_F.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HKY85.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV_1 +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94with9freqs.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAUserFreqs.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Yang2000Distributions.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwAA.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAAFreq.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16A +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAF81 +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/PCH +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94w9.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECM -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECMu --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HKY85.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/190 --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM+Freqs.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGFreqsEstimator.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94x2.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM_F.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94customF3x4.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/TrN.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGFreqsEstimator.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/S4 +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+MLFREQS.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAFreqs.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24_F.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69_binary.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters3.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters4.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K2P.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.dat +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin+F.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/H5N1 +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LG +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVWithin +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/BLOSUM62 +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtMAM -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtREV24 +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LCAP -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/IAV +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/VT +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/Dayhoff +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/WAG +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/MtArt +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/cpREV +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/rtREV -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/JTT -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/modellist.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/cpREV --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/WAG --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtMAM --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/H5N1 --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LCAP -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVBetween --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LG --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/Dayhoff --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/BLOSUM62 --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVWithin --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/rtREV --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/MtArt --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/VT --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16A --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAA.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/LCAP.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/S4 --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/CF3x4.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff_F.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customCF3x4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween+F.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV_F.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAUserFreqs.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84P.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69_binary.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Default --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94with9freqs.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K3ST.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customF1x4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAMuse95.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/PCH --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin+F.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters2.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F3x4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAF81 --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/BranchSiteTemplate.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94customF3x4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwEX.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K2P.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineHM.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/190 -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94w9.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAFreqs.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GRM.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16SvH.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/custm4x4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wEX.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAAFreq.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+MLFREQS.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94custom.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94x2.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAMuse95.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F+omega.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineGamma.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81_binary.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAEqualInput --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16SvH.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/TrN.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/STGRM.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/UniversalCode.def --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM_F.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAEqualInput +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/CF3x4.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customFreqs.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/models.lst +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAA.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/fitness.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F+omega.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV_1 --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAA.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61multiple.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters5.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineHM.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24_F.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters2.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA_empirical.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween+F.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwEX.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wEX.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG_F.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineGamma.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwAA.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.dat --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Yang2000Distributions.def --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/reducedREV.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeCodonData.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AAModelComparison.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRate.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonToProtein.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GA_CHC_Binary.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper4.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/chooseDistanceFormula.def -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/distanceRMethodNPBootstrap.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SlidingWindowAnalysis.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/partitionSequences.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit_helper.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/relative_prot_rates.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/plusF_helper.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/README_relative_prot_rates.md +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CleanStopCodons.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/doNNISwap.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2_mf.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSDistributionComparison.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGEmulator_MF.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NucModelCompare.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentCodon.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/bayesgraph.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LRTRecombTest.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/files.lst +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/RelativeRate.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relative_nucleotide_rates.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MergeSequences.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonBivariateRateProcessor.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/ReadDelimitedFiles.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/CoalescentPostProcessor.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/PostScript.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/NJ.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/DescriptiveStatistics.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/GrabBag.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/LocalMGREVMLFreqs.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/AncestralMapper.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/MPITools.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/ProbabilityDistributions.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/CodonTools.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/HXB2Mapper.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/PS_Plotters.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/LocalMGREV.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/DBTools.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/WriteDelimitedFiles.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/TreeFunctions.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/BranchLengthFitters.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_MFReader_.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSRateAnalysis.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Unaligned_LZ +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonToolsMain.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_binary +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC_RV +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_codon +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN84 +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN93 +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC_MH +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonTools.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN93_RV +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/JC69 +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Nei_Gojobori +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_aa +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/T3P +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Modified_Nei_Gojobori +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/K2P +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/K2P_RV +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonTools2.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Unaligned_LZ_FR +-- Installing: 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/build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRatio.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BranchSiteREL.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeCorrelationCoefficients.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/F_ST.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeTools.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSResultProcessor.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/pairwiseDistanceEstimator.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimmondsAI.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MergeSites.bf +-- Installing: 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Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/trees.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/ancestral.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/genetic_code.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/mpi.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/bayesgraph.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/distances.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GA_CHC_Binary.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2_mf.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LocalMolClock.bf --- Installing: 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Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Codon -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 3 params. -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 9 params. +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Codon -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Equal --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Partition --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Data Set --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Estimated --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Equal +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/aa.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta-Gamma +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/General Discrete +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Half Normal +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Lognormal +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/2 Bin Discrete -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/codon.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Partition -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Data Set --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Estimated -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Equal +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Estimated -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/nuc.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Half Normal --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Lognormal --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/2 Bin Discrete --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta-Gamma --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/General Discrete --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/aa.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/dinuc.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/K2P --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/JC69 --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xHKY85_3x4_2Rates.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/Lineage_MG94xHKY85.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94REVOmegaCF3x4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV_GDD.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/GY94_3x4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_3x4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xTN93_3x4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_REV_3x4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_HKY85x3_4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REV.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/HKY85.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REVBetaGamma.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/F81.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/EFVEstimated.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/TrN.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Fitness.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/mtREV.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Jones.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Dayhoff.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/EIAA.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary/F81.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Euplotid_Nuclear.cod --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Thraustochytrium_mtDNA.cod --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Yeast_mtDNA.cod --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Invertebrate_mtDNA.cod --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ciliate.cod --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Mold_mtDNA.cod --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Flatworm_mtDNA.cod --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Echinoderm_mtDNA.cod --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ascidian_mtDNA.cod --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Blepharisma_Nuclear.cod --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Vertebratemtdna.cod +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Partition +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Data Set +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Equal +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Estimated -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/bin/hyphy -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/bin/HYPHYMPI -- Set runtime path of "/build/hyphy-2.5.28+dfsg/debian/tmp/usr/bin/HYPHYMPI" to "" -make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' +make[1]: Verzeichnis „/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu“ wird verlassen debian/rules override_dh_install-arch -make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.28+dfsg“ wird betreten dh_install -a chrpath --delete obj-*/HYPHYMPI -make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.28+dfsg“ wird verlassen debian/rules override_dh_install-indep -make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.28+dfsg“ wird betreten dh_install -i -make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.28+dfsg“ wird verlassen debian/rules override_dh_installdocs-arch -make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.28+dfsg“ wird betreten dh_installdocs -a for news in debian/NEWS.Debian.* ; do \ pkg=`echo ${news} | sed 's/.*NEWS.Debian.//'` ; \ cp -a ${news} debian/${pkg}/usr/share/doc/${pkg}/NEWS.Debian ; \ done -make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.28+dfsg“ wird verlassen debian/rules override_dh_installdocs-indep -make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.28+dfsg“ wird betreten dh_installdocs -i -make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' +make[1]: Verzeichnis „/build/hyphy-2.5.28+dfsg“ wird verlassen dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake @@ -1825,23 +1895,25 @@ dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'hyphy-mpi-dbgsym' in '../hyphy-mpi-dbgsym_2.5.28+dfsg-3_i386.deb'. -dpkg-deb: building package 'hyphy-common' in '../hyphy-common_2.5.28+dfsg-3_all.deb'. -dpkg-deb: building package 'hyphy-mpi' in '../hyphy-mpi_2.5.28+dfsg-3_i386.deb'. -dpkg-deb: building package 'hyphy-pt' in '../hyphy-pt_2.5.28+dfsg-3_i386.deb'. -dpkg-deb: building package 'hyphy-pt-dbgsym' in '../hyphy-pt-dbgsym_2.5.28+dfsg-3_i386.deb'. +dpkg-deb: Paket »hyphy-pt« wird in »../hyphy-pt_2.5.28+dfsg-3_i386.deb« gebaut. +dpkg-deb: Paket »hyphy-pt-dbgsym« wird in »../hyphy-pt-dbgsym_2.5.28+dfsg-3_i386.deb« gebaut. +dpkg-deb: Paket »hyphy-mpi« wird in »../hyphy-mpi_2.5.28+dfsg-3_i386.deb« gebaut. +dpkg-deb: Paket »hyphy-mpi-dbgsym« wird in »../hyphy-mpi-dbgsym_2.5.28+dfsg-3_i386.deb« gebaut. +dpkg-deb: Paket »hyphy-common« wird in »../hyphy-common_2.5.28+dfsg-3_all.deb« gebaut. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../hyphy_2.5.28+dfsg-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/10933/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/10933/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/10130 and its subdirectories -I: Current time: Wed Jun 23 06:22:56 -12 2021 -I: pbuilder-time-stamp: 1624472576 +I: removing directory /srv/workspace/pbuilder/10933 and its subdirectories +I: Current time: Wed Jul 27 14:47:07 +14 2022 +I: pbuilder-time-stamp: 1658882827