Diff of the two buildlogs: -- --- b1/build.log 2024-01-06 22:47:39.389550497 +0000 +++ b2/build.log 2024-01-06 23:07:22.447222867 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Feb 7 17:03:30 -12 2025 -I: pbuilder-time-stamp: 1738991010 +I: Current time: Sun Jan 7 12:47:44 +14 2024 +I: pbuilder-time-stamp: 1704581264 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: copying [./mdtraj_1.9.5-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.2nnIm_tO/trustedkeys.kbx': General error +gpgv: keyblock resource '/tmp/dpkg-verify-sig.GwmQtEH2/trustedkeys.kbx': General error gpgv: Signature made Mon Jan 18 05:50:28 2021 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: Can't check signature: No public key @@ -37,51 +37,82 @@ dpkg-source: info: applying rename-mdconvert-mdtraj.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/104979/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/13768/tmp/hooks/D01_modify_environment starting +debug: Running on ionos12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 6 22:48 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/13768/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/13768/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=7 ' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='3d9715272a734ed28896268b70e76957' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='104979' - PS1='# ' - PS2='> ' + INVOCATION_ID=bd978a34b4cf44399ec5780013f9dc0a + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=13768 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UfSHoaZj/pbuilderrc_9I8K --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UfSHoaZj/b1 --logfile b1/build.log mdtraj_1.9.5-1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UfSHoaZj/pbuilderrc_fmN8 --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UfSHoaZj/b2 --logfile b2/build.log mdtraj_1.9.5-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos16-i386 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-17-686-pae #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) i686 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Mar 27 2022 bash @@ -141,7 +172,7 @@ -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jan 8 15:47 sh -> dash + lrwxrwxrwx 1 root root 9 Jan 6 22:48 sh -> /bin/bash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Jan 20 2022 su @@ -167,7 +198,7 @@ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew -I: user script /srv/workspace/pbuilder/104979/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/13768/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -436,7 +467,7 @@ Get: 187 http://deb.debian.org/debian bullseye/main i386 python3-sklearn all 0.23.2-5 [1818 kB] Get: 188 http://deb.debian.org/debian bullseye/main i386 python3-tables-lib i386 3.6.1-3 [409 kB] Get: 189 http://deb.debian.org/debian bullseye/main i386 python3-tables all 3.6.1-3 [342 kB] -Fetched 103 MB in 2s (58.9 MB/s) +Fetched 103 MB in 6s (17.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17763 files and directories currently installed.) @@ -1043,8 +1074,8 @@ Setting up tzdata (2021a-1+deb11u10) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Feb 8 05:04:00 UTC 2025. -Universal Time is now: Sat Feb 8 05:04:00 UTC 2025. +Local time is now: Sat Jan 6 22:49:55 UTC 2024. +Universal Time is now: Sat Jan 6 22:49:55 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20180224.1+nmu1) ... @@ -1246,7 +1277,11 @@ fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/mdtraj-1.9.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mdtraj_1.9.5-1_source.changes +I: user script /srv/workspace/pbuilder/13768/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/13768/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/mdtraj-1.9.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mdtraj_1.9.5-1_source.changes dpkg-buildpackage: info: source package mdtraj dpkg-buildpackage: info: source version 1.9.5-1 dpkg-buildpackage: info: source distribution unstable @@ -1399,98 +1434,98 @@ copying mdtraj/io.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj copying mdtraj/version.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj copying mdtraj/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj +creating /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/testing +copying mdtraj/testing/testing.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/testing +copying mdtraj/testing/docscrape.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/testing +copying mdtraj/testing/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/testing +copying mdtraj/testing/docstrings.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/testing creating /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters -copying mdtraj/reporters/basereporter.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/hdf5reporter.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/dcdreporter.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters -copying mdtraj/reporters/netcdfreporter.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters +copying mdtraj/reporters/netcdfreporter.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters +copying mdtraj/reporters/basereporter.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/xtcreporter.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters -creating /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core -copying mdtraj/core/trajectory.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core -copying mdtraj/core/element.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core -copying mdtraj/core/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core -copying mdtraj/core/residue_names.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core -copying mdtraj/core/selection.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core -copying mdtraj/core/topology.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core -creating /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/testing -copying mdtraj/testing/docstrings.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/testing -copying mdtraj/testing/docscrape.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/testing -copying mdtraj/testing/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/testing -copying mdtraj/testing/testing.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/testing creating /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/nmr -copying mdtraj/nmr/scalar_couplings.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/nmr copying mdtraj/nmr/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/nmr copying mdtraj/nmr/shift_wrappers.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/nmr -creating /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils -copying mdtraj/utils/zipped.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils -copying mdtraj/utils/rotation.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils -copying mdtraj/utils/singleton.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils -copying mdtraj/utils/validation.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils -copying mdtraj/utils/unitcell.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils -copying mdtraj/utils/six.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils -copying mdtraj/utils/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils -copying mdtraj/utils/contextmanagers.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils -copying mdtraj/utils/delay_import.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils +copying mdtraj/nmr/scalar_couplings.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/nmr creating /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats -copying mdtraj/formats/lh5.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats -copying mdtraj/formats/psf.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats -copying mdtraj/formats/amberrst.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats -copying mdtraj/formats/lammpstrj.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats +copying mdtraj/formats/hdf5.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats +copying mdtraj/formats/openmmxml.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats +copying mdtraj/formats/mol2.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats copying mdtraj/formats/registry.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats -copying mdtraj/formats/prmtop.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats copying mdtraj/formats/mdcrd.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats -copying mdtraj/formats/mol2.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats -copying mdtraj/formats/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats -copying mdtraj/formats/gro.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats +copying mdtraj/formats/lammpstrj.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats copying mdtraj/formats/hoomdxml.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats -copying mdtraj/formats/xyzfile.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats -copying mdtraj/formats/arc.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats +copying mdtraj/formats/gro.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats +copying mdtraj/formats/prmtop.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats +copying mdtraj/formats/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats +copying mdtraj/formats/psf.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats copying mdtraj/formats/netcdf.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats -copying mdtraj/formats/openmmxml.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats copying mdtraj/formats/gsd.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats -copying mdtraj/formats/hdf5.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats +copying mdtraj/formats/amberrst.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats +copying mdtraj/formats/lh5.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats +copying mdtraj/formats/arc.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats +copying mdtraj/formats/xyzfile.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats +creating /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core +copying mdtraj/core/topology.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core +copying mdtraj/core/element.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core +copying mdtraj/core/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core +copying mdtraj/core/selection.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core +copying mdtraj/core/residue_names.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core +copying mdtraj/core/trajectory.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core +creating /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/scripts +copying mdtraj/scripts/mdconvert.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/scripts +copying mdtraj/scripts/mdinspect.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/scripts +copying mdtraj/scripts/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/scripts creating /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry -copying mdtraj/geometry/shape.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry -copying mdtraj/geometry/rg.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry -copying mdtraj/geometry/contact.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry -copying mdtraj/geometry/alignment.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/dihedral.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry -copying mdtraj/geometry/dssp.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry -copying mdtraj/geometry/angle.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry +copying mdtraj/geometry/sasa.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry +copying mdtraj/geometry/rdf.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry +copying mdtraj/geometry/thermodynamic_properties.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry +copying mdtraj/geometry/rg.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry +copying mdtraj/geometry/distance.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/hbond.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry -copying mdtraj/geometry/thermodynamic_properties.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry -copying mdtraj/geometry/order.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry +copying mdtraj/geometry/contact.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry +copying mdtraj/geometry/shape.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/internal.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry -copying mdtraj/geometry/distance.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry -copying mdtraj/geometry/rdf.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry -copying mdtraj/geometry/sasa.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry -creating /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/scripts -copying mdtraj/scripts/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/scripts -copying mdtraj/scripts/mdinspect.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/scripts -copying mdtraj/scripts/mdconvert.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/scripts +copying mdtraj/geometry/order.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry +copying mdtraj/geometry/alignment.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry +copying mdtraj/geometry/angle.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry +copying mdtraj/geometry/dssp.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry +creating /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils +copying mdtraj/utils/singleton.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils +copying mdtraj/utils/rotation.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils +copying mdtraj/utils/unitcell.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils +copying mdtraj/utils/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils +copying mdtraj/utils/six.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils +copying mdtraj/utils/zipped.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils +copying mdtraj/utils/contextmanagers.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils +copying mdtraj/utils/delay_import.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils +copying mdtraj/utils/validation.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils +creating /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb +copying mdtraj/formats/pdb/pdbfile.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb +copying mdtraj/formats/pdb/pdbstructure.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb +copying mdtraj/formats/pdb/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb creating /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit -copying mdtraj/utils/unit/constants.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit -copying mdtraj/utils/unit/standard_dimensions.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit -copying mdtraj/utils/unit/unit_operators.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/unit.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/unit_definitions.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit -copying mdtraj/utils/unit/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit -copying mdtraj/utils/unit/prefix.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit -copying mdtraj/utils/unit/baseunit.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit -copying mdtraj/utils/unit/unit_math.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/quantity.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit -copying mdtraj/utils/unit/doctests.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit +copying mdtraj/utils/unit/baseunit.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit +copying mdtraj/utils/unit/prefix.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/basedimension.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit +copying mdtraj/utils/unit/unit_operators.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit +copying mdtraj/utils/unit/standard_dimensions.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit +copying mdtraj/utils/unit/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/mymatrix.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit -creating /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb -copying mdtraj/formats/pdb/pdbfile.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb -copying mdtraj/formats/pdb/pdbstructure.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb -copying mdtraj/formats/pdb/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb +copying mdtraj/utils/unit/unit_math.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit +copying mdtraj/utils/unit/constants.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit +copying mdtraj/utils/unit/doctests.py -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit creating /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb/data -copying mdtraj/formats/pdb/data/residues.xml -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb/data copying mdtraj/formats/pdb/data/pdbNames.xml -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb/data +copying mdtraj/formats/pdb/data/residues.xml -> /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb/data running build_ext building 'mdtraj.formats.xtc' extension creating build @@ -2058,97 +2093,97 @@ building 'mdtraj._rmsd' extension creating build/temp.linux-i386-3.9/mdtraj/rmsd creating build/temp.linux-i386-3.9/mdtraj/rmsd/src -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/_rmsd.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/_rmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/_rmsd.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/_rmsd.o -fopenmp -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare mdtraj/rmsd/_rmsd.cpp: In function 'int __Pyx_InitGlobals()': -mdtraj/rmsd/_rmsd.cpp:24626:20: warning: 'void PyEval_InitThreads()' is deprecated [-Wdeprecated-declarations] -24626 | PyEval_InitThreads(); +mdtraj/rmsd/_rmsd.cpp:24625:20: warning: 'void PyEval_InitThreads()' is deprecated [-Wdeprecated-declarations] +24625 | PyEval_InitThreads(); | ^ In file included from /usr/include/python3.9/Python.h:145, - from mdtraj/rmsd/_rmsd.cpp:40: + from mdtraj/rmsd/_rmsd.cpp:39: /usr/include/python3.9/ceval.h:130:37: note: declared here 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/src/center.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/src/rotation.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/src/rotation.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/src/theobald_rmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/src/center.o -fopenmp -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/src/rotation.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/src/rotation.o -fopenmp -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/src/theobald_rmsd.o -fopenmp -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/mdtraj/rmsd/_rmsd.o build/temp.linux-i386-3.9/mdtraj/rmsd/src/center.o build/temp.linux-i386-3.9/mdtraj/rmsd/src/rotation.o build/temp.linux-i386-3.9/mdtraj/rmsd/src/theobald_rmsd.o -lgomp -o /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/_rmsd.cpython-39-i386-linux-gnu.so building 'mdtraj._lprmsd' extension -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/_lprmsd.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/_lprmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/_lprmsd.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/_lprmsd.o -fopenmp -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, - from mdtraj/rmsd/_lprmsd.cpp:668: + from mdtraj/rmsd/_lprmsd.cpp:667: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ mdtraj/rmsd/_lprmsd.cpp: In function 'int __Pyx_InitGlobals()': -mdtraj/rmsd/_lprmsd.cpp:9166:20: warning: 'void PyEval_InitThreads()' is deprecated [-Wdeprecated-declarations] - 9166 | PyEval_InitThreads(); +mdtraj/rmsd/_lprmsd.cpp:9165:20: warning: 'void PyEval_InitThreads()' is deprecated [-Wdeprecated-declarations] + 9165 | PyEval_InitThreads(); | ^ In file included from /usr/include/python3.9/Python.h:145, - from mdtraj/rmsd/_lprmsd.cpp:48: + from mdtraj/rmsd/_lprmsd.cpp:47: /usr/include/python3.9/ceval.h:130:37: note: declared here 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ mdtraj/rmsd/_lprmsd.cpp: In function 'PyObject* __pyx_pf_6mdtraj_7_lprmsd_lprmsd(PyObject*, PyObject*, PyObject*, int, PyObject*, PyObject*, PyLongObject*, PyLongObject*)': -mdtraj/rmsd/_lprmsd.cpp:3964:14: warning: '__pyx_pybuffernd_ref_xyz_frame_dis.__Pyx_LocalBuf_ND::diminfo[0].__Pyx_Buf_DimInfo::shape' may be used uninitialized in this function [-Wmaybe-uninitialized] - 3964 | } else if (unlikely(__pyx_t_34 >= __pyx_pybuffernd_ref_xyz_frame_dis.diminfo[0].shape)) __pyx_t_33 = 0; +mdtraj/rmsd/_lprmsd.cpp:3963:14: warning: '__pyx_pybuffernd_ref_xyz_frame_dis.__Pyx_LocalBuf_ND::diminfo[0].__Pyx_Buf_DimInfo::shape' may be used uninitialized in this function [-Wmaybe-uninitialized] + 3963 | } else if (unlikely(__pyx_t_34 >= __pyx_pybuffernd_ref_xyz_frame_dis.diminfo[0].shape)) __pyx_t_33 = 0; | ^~ -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/src/Munkres.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/src/Munkres.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/src/center.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/src/euclidean_permutation.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/src/euclidean_permutation.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/src/fancy_index.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/src/fancy_index.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/src/rotation.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/src/rotation.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/src/theobald_rmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/src/Munkres.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/src/Munkres.o -fopenmp -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/src/center.o -fopenmp -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/src/euclidean_permutation.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/src/euclidean_permutation.o -fopenmp -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/src/fancy_index.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/src/fancy_index.o -fopenmp -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/src/rotation.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/src/rotation.o -fopenmp -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/src/theobald_rmsd.o -fopenmp -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/mdtraj/rmsd/_lprmsd.o build/temp.linux-i386-3.9/mdtraj/rmsd/src/Munkres.o build/temp.linux-i386-3.9/mdtraj/rmsd/src/center.o build/temp.linux-i386-3.9/mdtraj/rmsd/src/euclidean_permutation.o build/temp.linux-i386-3.9/mdtraj/rmsd/src/fancy_index.o build/temp.linux-i386-3.9/mdtraj/rmsd/src/rotation.o build/temp.linux-i386-3.9/mdtraj/rmsd/src/theobald_rmsd.o -lgomp -o /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/_lprmsd.cpython-39-i386-linux-gnu.so building 'mdtraj.core.lib.libtheobald' extension -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/src/theobald_rmsd.o -msse2 -mssse3 -O3 -funroll-loops -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/src/center.o -msse2 -mssse3 -O3 -funroll-loops +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/src/theobald_rmsd.o -mssse3 -O3 -funroll-loops +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-i386-3.9/mdtraj/rmsd/src/center.o -mssse3 -O3 -funroll-loops i686-linux-gnu-gcc-ar rcs /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/lib/libtheobald.a build/temp.linux-i386-3.9/mdtraj/rmsd/src/theobald_rmsd.o build/temp.linux-i386-3.9/mdtraj/rmsd/src/center.o building 'mdtraj.geometry._geometry' extension creating build/temp.linux-i386-3.9/mdtraj/geometry creating build/temp.linux-i386-3.9/mdtraj/geometry/src -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/geometry/src/_geometry.cpp -o build/temp.linux-i386-3.9/mdtraj/geometry/src/_geometry.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/geometry/src/_geometry.cpp -o build/temp.linux-i386-3.9/mdtraj/geometry/src/_geometry.o -fopenmp -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, - from mdtraj/geometry/src/_geometry.cpp:670: + from mdtraj/geometry/src/_geometry.cpp:669: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ mdtraj/geometry/src/_geometry.cpp: In function 'void __pyx_f_6mdtraj_8geometry_9_geometry_make_whole(__Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice)': -mdtraj/geometry/src/_geometry.cpp:5506:224: warning: '__pyx_v_delta[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] - 5506 | (__pyx_v_offset[__pyx_v_k]) = ((*((float *) ( /* dim=1 */ ((char *) (((float *) ( /* dim=0 */ (__pyx_v_frame_unitcell_vectors.data + __pyx_t_8 * __pyx_v_frame_unitcell_vectors.strides[0]) )) + __pyx_t_7)) ))) * roundf(((__pyx_v_delta[2]) / (*((float *) ( /* dim=1 */ ((char *) (((float *) ( /* dim=0 */ (__pyx_v_frame_unitcell_vectors.data + __pyx_t_5 * __pyx_v_frame_unitcell_vectors.strides[0]) )) + __pyx_t_4)) )))))); +mdtraj/geometry/src/_geometry.cpp:5505:224: warning: '__pyx_v_delta[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] + 5505 | (__pyx_v_offset[__pyx_v_k]) = ((*((float *) ( /* dim=1 */ ((char *) (((float *) ( /* dim=0 */ (__pyx_v_frame_unitcell_vectors.data + __pyx_t_8 * __pyx_v_frame_unitcell_vectors.strides[0]) )) + __pyx_t_7)) ))) * roundf(((__pyx_v_delta[2]) / (*((float *) ( /* dim=1 */ ((char *) (((float *) ( /* dim=0 */ (__pyx_v_frame_unitcell_vectors.data + __pyx_t_5 * __pyx_v_frame_unitcell_vectors.strides[0]) )) + __pyx_t_4)) )))))); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -mdtraj/geometry/src/_geometry.cpp:5520:277: warning: '__pyx_v_delta[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] - 5520 | (__pyx_v_offset[__pyx_t_9]) = ((__pyx_v_offset[__pyx_t_9]) + ((*((float *) ( /* dim=1 */ ((char *) (((float *) ( /* dim=0 */ (__pyx_v_frame_unitcell_vectors.data + __pyx_t_4 * __pyx_v_frame_unitcell_vectors.strides[0]) )) + __pyx_t_5)) ))) * roundf((((__pyx_v_delta[1]) - (__pyx_v_offset[1])) / (*((float *) ( /* dim=1 */ ((char *) (((float *) ( /* dim=0 */ (__pyx_v_frame_unitcell_vectors.data + __pyx_t_7 * __pyx_v_frame_unitcell_vectors.strides[0]) )) + __pyx_t_8)) ))))))); +mdtraj/geometry/src/_geometry.cpp:5519:277: warning: '__pyx_v_delta[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] + 5519 | (__pyx_v_offset[__pyx_t_9]) = ((__pyx_v_offset[__pyx_t_9]) + ((*((float *) ( /* dim=1 */ ((char *) (((float *) ( /* dim=0 */ (__pyx_v_frame_unitcell_vectors.data + __pyx_t_4 * __pyx_v_frame_unitcell_vectors.strides[0]) )) + __pyx_t_5)) ))) * roundf((((__pyx_v_delta[1]) - (__pyx_v_offset[1])) / (*((float *) ( /* dim=1 */ ((char *) (((float *) ( /* dim=0 */ (__pyx_v_frame_unitcell_vectors.data + __pyx_t_7 * __pyx_v_frame_unitcell_vectors.strides[0]) )) + __pyx_t_8)) ))))))); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -mdtraj/geometry/src/_geometry.cpp:5520:277: warning: '__pyx_v_offset[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/geometry/src/dssp.cpp -o build/temp.linux-i386-3.9/mdtraj/geometry/src/dssp.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/geometry/src/geometry.cpp -o build/temp.linux-i386-3.9/mdtraj/geometry/src/geometry.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/geometry/src/sasa.cpp -o build/temp.linux-i386-3.9/mdtraj/geometry/src/sasa.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare +mdtraj/geometry/src/_geometry.cpp:5519:277: warning: '__pyx_v_offset[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/geometry/src/dssp.cpp -o build/temp.linux-i386-3.9/mdtraj/geometry/src/dssp.o -fopenmp -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/geometry/src/geometry.cpp -o build/temp.linux-i386-3.9/mdtraj/geometry/src/geometry.o -fopenmp -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/geometry/src/sasa.cpp -o build/temp.linux-i386-3.9/mdtraj/geometry/src/sasa.o -fopenmp -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/mdtraj/geometry/src/_geometry.o build/temp.linux-i386-3.9/mdtraj/geometry/src/dssp.o build/temp.linux-i386-3.9/mdtraj/geometry/src/geometry.o build/temp.linux-i386-3.9/mdtraj/geometry/src/sasa.o -lgomp -o /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/_geometry.cpython-39-i386-linux-gnu.so building 'mdtraj.geometry.drid' extension -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/geometry/drid.cpp -o build/temp.linux-i386-3.9/mdtraj/geometry/drid.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/geometry/drid.cpp -o build/temp.linux-i386-3.9/mdtraj/geometry/drid.o -fopenmp -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare mdtraj/geometry/drid.cpp: In function 'int __Pyx_InitGlobals()': -mdtraj/geometry/drid.cpp:18465:20: warning: 'void PyEval_InitThreads()' is deprecated [-Wdeprecated-declarations] -18465 | PyEval_InitThreads(); +mdtraj/geometry/drid.cpp:18464:20: warning: 'void PyEval_InitThreads()' is deprecated [-Wdeprecated-declarations] +18464 | PyEval_InitThreads(); | ^ In file included from /usr/include/python3.9/Python.h:145, - from mdtraj/geometry/drid.cpp:39: + from mdtraj/geometry/drid.cpp:38: /usr/include/python3.9/ceval.h:130:37: note: declared here 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/geometry/src/dridkernels.cpp -o build/temp.linux-i386-3.9/mdtraj/geometry/src/dridkernels.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/geometry/src/moments.cpp -o build/temp.linux-i386-3.9/mdtraj/geometry/src/moments.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/geometry/src/dridkernels.cpp -o build/temp.linux-i386-3.9/mdtraj/geometry/src/dridkernels.o -fopenmp -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/geometry/src/moments.cpp -o build/temp.linux-i386-3.9/mdtraj/geometry/src/moments.o -fopenmp -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/mdtraj/geometry/drid.o build/temp.linux-i386-3.9/mdtraj/geometry/src/dridkernels.o build/temp.linux-i386-3.9/mdtraj/geometry/src/moments.o -lgomp -o /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/drid.cpython-39-i386-linux-gnu.so building 'mdtraj.geometry.neighbors' extension -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/geometry/neighbors.cpp -o build/temp.linux-i386-3.9/mdtraj/geometry/neighbors.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/geometry/src/neighbors.cpp -o build/temp.linux-i386-3.9/mdtraj/geometry/src/neighbors.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/geometry/neighbors.cpp -o build/temp.linux-i386-3.9/mdtraj/geometry/neighbors.o -fopenmp -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/geometry/src/neighbors.cpp -o build/temp.linux-i386-3.9/mdtraj/geometry/src/neighbors.o -fopenmp -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/mdtraj/geometry/neighbors.o build/temp.linux-i386-3.9/mdtraj/geometry/src/neighbors.o -lgomp -o /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/neighbors.cpython-39-i386-linux-gnu.so building 'mdtraj.geometry.neighborlist' extension -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/geometry/neighborlist.cpp -o build/temp.linux-i386-3.9/mdtraj/geometry/neighborlist.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare -i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/geometry/src/neighborlist.cpp -o build/temp.linux-i386-3.9/mdtraj/geometry/src/neighborlist.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/geometry/neighborlist.cpp -o build/temp.linux-i386-3.9/mdtraj/geometry/neighborlist.o -fopenmp -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare +i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/mdtraj-1.9.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/geometry/src/neighborlist.cpp -o build/temp.linux-i386-3.9/mdtraj/geometry/src/neighborlist.o -fopenmp -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare mdtraj/geometry/src/neighborlist.cpp: In function 'std::vector > _compute_neighborlist(const float*, int, float, const float*)': mdtraj/geometry/src/neighborlist.cpp:50:53: warning: 'periodicBoxVectors[0][0]' may be used uninitialized in this function [-Wmaybe-uninitialized] 50 | periodicBoxSize[0] = periodicBoxVectors[0][0]; @@ -2283,71 +2318,71 @@ reading sources... [ 81%] atom_selection reading sources... [ 81%] building_docs reading sources... [ 82%] examples/atom-selection -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," reading sources... [ 83%] examples/centroids -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," reading sources... [ 84%] examples/clustering -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," reading sources... [ 85%] examples/hbonds -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," reading sources... [ 85%] examples/index reading sources... [ 86%] examples/introduction reading sources... [ 87%] examples/iterload -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," reading sources... [ 88%] examples/native-contact -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," reading sources... [ 88%] examples/nmr -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," reading sources... [ 89%] examples/openmm -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," reading sources... [ 90%] examples/pca -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," reading sources... [ 91%] examples/ramachandran-plot -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," reading sources... [ 92%] examples/rmsd-benchmark -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," reading sources... [ 92%] examples/solvent-accessible-surface-area -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," reading sources... [ 93%] examples/two-pass-clustering -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," -/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. +/usr/lib/python3/dist-packages/IPython/paths.py:66: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," reading sources... [ 94%] faq reading sources... [ 95%] hdf5_format @@ -2594,285 +2629,285 @@ creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9 creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj -creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/basereporter.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/hdf5reporter.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/dcdreporter.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/netcdfreporter.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/xtcreporter.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters -creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/__pycache__/hdf5reporter.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/__pycache__/basereporter.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/__pycache__/xtcreporter.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/__pycache__/dcdreporter.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/__pycache__/netcdfreporter.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters/__pycache__ copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/io.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/version.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj -creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core -creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/lib -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/lib/libtheobald.a -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/lib -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/lib/theobald_rmsd.h -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/lib -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/lib/center.h -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/lib -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/trajectory.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/element.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/residue_names.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core -creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/__pycache__/topology.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/__pycache__/trajectory.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/__pycache__/selection.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/__pycache__/element.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/__pycache__/residue_names.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/selection.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/topology.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/_rmsd.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/testing -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/testing/docstrings.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/testing +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/testing/testing.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/testing copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/testing/docscrape.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/testing copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/testing/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/testing creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/testing/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/testing/__pycache__/testing.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/testing/__pycache__ copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/testing/__pycache__/docstrings.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/testing/__pycache__ copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/testing/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/testing/__pycache__ copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/testing/__pycache__/docscrape.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/testing/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/testing/__pycache__/testing.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/testing/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/testing/testing.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/testing +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/testing/docstrings.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/testing +creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/hdf5reporter.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/dcdreporter.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/netcdfreporter.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/basereporter.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters +creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/__pycache__/dcdreporter.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/__pycache__/netcdfreporter.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/__pycache__/xtcreporter.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/__pycache__/hdf5reporter.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/__pycache__/basereporter.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/reporters/xtcreporter.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/nmr -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/nmr/scalar_couplings.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/nmr copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/nmr/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/nmr copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/nmr/shift_wrappers.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/nmr +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/nmr/scalar_couplings.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/nmr creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/nmr/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/nmr/__pycache__/scalar_couplings.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/nmr/__pycache__ copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/nmr/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/nmr/__pycache__ copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/nmr/__pycache__/shift_wrappers.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/nmr/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/nmr/__pycache__/scalar_couplings.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/nmr/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/version.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/_lprmsd.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj -creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/zipped.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/rotation.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/singleton.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/validation.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unitcell.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/six.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/contextmanagers.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils -creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/constants.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/standard_dimensions.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/unit_operators.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/unit.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/unit_definitions.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/prefix.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit -creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/__pycache__/baseunit.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/__pycache__/quantity.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/__pycache__/unit_definitions.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/__pycache__/mymatrix.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/__pycache__/unit_operators.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/__pycache__/unit.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/__pycache__/standard_dimensions.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/__pycache__/basedimension.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/__pycache__/prefix.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/baseunit.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/unit_math.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/quantity.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/doctests.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/basedimension.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/mymatrix.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/delay_import.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils -creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/__pycache__/contextmanagers.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/__pycache__/singleton.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/__pycache__/unitcell.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/__pycache__/six.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/__pycache__/zipped.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/__pycache__/rotation.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/__pycache__/delay_import.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/__pycache__/validation.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/__pycache__ creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/lh5.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/binpos.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/dcd.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/psf.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/amberrst.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/lammpstrj.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/registry.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/prmtop.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/mdcrd.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/mol2.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/xtc.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/gro.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/dtr.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats -creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/mdcrd.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/lh5.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/amberrst.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/psf.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/arc.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/gro.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/hoomdxml.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/xyzfile.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/netcdf.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/lammpstrj.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/registry.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/openmmxml.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/gsd.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/prmtop.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/hdf5.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/mol2.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/hoomdxml.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/xyzfile.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/arc.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/hdf5.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/openmmxml.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/trr.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/pdb copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb/pdbfile.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/pdb -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb/pdbstructure.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/pdb -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/pdb creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/pdb/data -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb/data/residues.xml -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/pdb/data copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb/data/pdbNames.xml -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/pdb/data +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb/data/residues.xml -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/pdb/data +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb/pdbstructure.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/pdb +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/pdb creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/pdb/__pycache__ copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/pdb/__pycache__ copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb/__pycache__/pdbstructure.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/pdb/__pycache__ copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/pdb/__pycache__/pdbfile.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/pdb/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/mol2.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/registry.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/dtr.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/mdcrd.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/binpos.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/lammpstrj.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/dcd.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/hoomdxml.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/gro.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/prmtop.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/psf.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/tng.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/netcdf.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/openmmxml.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/gsd.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/tng.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/hdf5.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/xtc.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/amberrst.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats +creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/registry.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/mdcrd.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/hdf5.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/gsd.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/lammpstrj.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/arc.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/prmtop.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/xyzfile.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/mol2.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/gro.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/netcdf.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/openmmxml.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/hoomdxml.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/lh5.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/amberrst.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/__pycache__/psf.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/lh5.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/arc.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/formats/xyzfile.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats +creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/__pycache__/version.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/__pycache__ +creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/topology.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core +creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/lib +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/lib/center.h -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/lib +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/lib/libtheobald.a -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/lib +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/lib/theobald_rmsd.h -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/lib +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/element.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/selection.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/residue_names.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/trajectory.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core +creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/__pycache__/element.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/__pycache__/topology.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/__pycache__/selection.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/__pycache__/residue_names.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/core/__pycache__/trajectory.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/__pycache__ +creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/scripts +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/scripts/mdconvert.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/scripts +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/scripts/mdinspect.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/scripts +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/scripts/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/scripts +creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/scripts/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/scripts/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/scripts/__pycache__ creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/shape.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/rg.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/drid.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/neighbors.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/contact.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/neighborlist.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/alignment.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/dihedral.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/dssp.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/angle.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/sasa.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/rdf.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/_geometry.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/neighborlist.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/thermodynamic_properties.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/rg.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/distance.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/hbond.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/thermodynamic_properties.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/order.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/neighbors.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/contact.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/shape.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/internal.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/_geometry.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/contact.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/dssp.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/alignment.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/shape.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/angle.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/rg.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/order.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/dssp.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/distance.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/shape.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/hbond.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/rdf.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/rg.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/contact.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/sasa.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/thermodynamic_properties.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/dihedral.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/hbond.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/distance.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/rdf.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/sasa.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry -creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/__pycache__/version.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/_lprmsd.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/_rmsd.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj -creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/scripts -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/scripts/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/scripts -creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/scripts/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/scripts/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/scripts/__pycache__ -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/scripts/mdinspect.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/scripts -copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/scripts/mdconvert.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/scripts -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters/basereporter.py to basereporter.cpython-39.pyc +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/thermodynamic_properties.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/distance.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/__pycache__/angle.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/order.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/alignment.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/angle.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/drid.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/geometry/dssp.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry +creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/singleton.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/rotation.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unitcell.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils +creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/unit.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/unit_definitions.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/quantity.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/baseunit.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/prefix.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/basedimension.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/unit_operators.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/standard_dimensions.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/__init__.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/mymatrix.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/unit_math.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/constants.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit +creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/__pycache__/prefix.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/__pycache__/basedimension.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/__pycache__/standard_dimensions.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/__pycache__/unit.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/__pycache__/unit_operators.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/__pycache__/mymatrix.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/__pycache__/quantity.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/__pycache__/unit_definitions.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/__pycache__/baseunit.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/unit/doctests.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/six.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/zipped.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/contextmanagers.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils +creating /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/__pycache__/singleton.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/__pycache__/six.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/__pycache__/rotation.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/__pycache__/validation.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/__pycache__/zipped.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/__pycache__/unitcell.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/__pycache__/delay_import.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/__pycache__/contextmanagers.cpython-39.pyc -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/__pycache__ +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/delay_import.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils +copying /build/reproducible-path/mdtraj-1.9.5/.pybuild/cpython3_3.9_mdtraj/build/mdtraj/utils/validation.py -> /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/io.py to io.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/testing/testing.py to testing.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/testing/docscrape.py to docscrape.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/testing/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/testing/docstrings.py to docstrings.cpython-39.pyc byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters/hdf5reporter.py to hdf5reporter.cpython-39.pyc byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters/dcdreporter.py to dcdreporter.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters/netcdfreporter.py to netcdfreporter.cpython-39.pyc byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters/netcdfreporter.py to netcdfreporter.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters/basereporter.py to basereporter.cpython-39.pyc byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/reporters/xtcreporter.py to xtcreporter.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/io.py to io.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/nmr/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/nmr/shift_wrappers.py to shift_wrappers.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/nmr/scalar_couplings.py to scalar_couplings.cpython-39.pyc byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/version.py to version.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/trajectory.py to trajectory.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/hdf5.py to hdf5.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/openmmxml.py to openmmxml.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/pdb/pdbfile.py to pdbfile.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/pdb/pdbstructure.py to pdbstructure.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/pdb/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/mol2.py to mol2.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/registry.py to registry.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/mdcrd.py to mdcrd.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/lammpstrj.py to lammpstrj.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/hoomdxml.py to hoomdxml.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/gro.py to gro.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/prmtop.py to prmtop.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/psf.py to psf.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/netcdf.py to netcdf.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/gsd.py to gsd.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/amberrst.py to amberrst.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/lh5.py to lh5.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/arc.py to arc.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/xyzfile.py to xyzfile.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/topology.py to topology.cpython-39.pyc byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/element.py to element.cpython-39.pyc byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/residue_names.py to residue_names.cpython-39.pyc byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/selection.py to selection.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/topology.py to topology.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/testing/docstrings.py to docstrings.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/testing/docscrape.py to docscrape.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/testing/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/testing/testing.py to testing.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/nmr/scalar_couplings.py to scalar_couplings.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/nmr/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/nmr/shift_wrappers.py to shift_wrappers.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/zipped.py to zipped.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/rotation.py to rotation.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/residue_names.py to residue_names.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/core/trajectory.py to trajectory.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/scripts/mdconvert.py to mdconvert.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/scripts/mdinspect.py to mdinspect.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/scripts/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/dihedral.py to dihedral.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/sasa.py to sasa.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/rdf.py to rdf.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/thermodynamic_properties.py to thermodynamic_properties.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/rg.py to rg.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/distance.py to distance.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/hbond.py to hbond.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/contact.py to contact.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/shape.py to shape.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/internal.py to internal.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/order.py to order.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/alignment.py to alignment.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/angle.py to angle.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/dssp.py to dssp.cpython-39.pyc byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/singleton.py to singleton.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/validation.py to validation.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/rotation.py to rotation.cpython-39.pyc byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unitcell.py to unitcell.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/six.py to six.cpython-39.pyc byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/contextmanagers.py to contextmanagers.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/constants.py to constants.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/standard_dimensions.py to standard_dimensions.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/unit_operators.py to unit_operators.cpython-39.pyc byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/unit.py to unit.cpython-39.pyc byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/unit_definitions.py to unit_definitions.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/prefix.py to prefix.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/baseunit.py to baseunit.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/unit_math.py to unit_math.cpython-39.pyc byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/quantity.py to quantity.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/doctests.py to doctests.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/baseunit.py to baseunit.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/prefix.py to prefix.cpython-39.pyc byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/basedimension.py to basedimension.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/unit_operators.py to unit_operators.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/standard_dimensions.py to standard_dimensions.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/mymatrix.py to mymatrix.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/unit_math.py to unit_math.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/constants.py to constants.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/unit/doctests.py to doctests.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/six.py to six.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/zipped.py to zipped.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/contextmanagers.py to contextmanagers.cpython-39.pyc byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/delay_import.py to delay_import.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/lh5.py to lh5.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/psf.py to psf.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/amberrst.py to amberrst.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/lammpstrj.py to lammpstrj.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/registry.py to registry.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/prmtop.py to prmtop.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/mdcrd.py to mdcrd.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/mol2.py to mol2.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/gro.py to gro.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/hoomdxml.py to hoomdxml.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/xyzfile.py to xyzfile.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/arc.py to arc.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/pdb/pdbfile.py to pdbfile.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/pdb/pdbstructure.py to pdbstructure.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/pdb/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/netcdf.py to netcdf.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/openmmxml.py to openmmxml.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/gsd.py to gsd.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/formats/hdf5.py to hdf5.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/shape.py to shape.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/rg.py to rg.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/contact.py to contact.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/alignment.py to alignment.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/dihedral.py to dihedral.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/dssp.py to dssp.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/angle.py to angle.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/hbond.py to hbond.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/thermodynamic_properties.py to thermodynamic_properties.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/order.py to order.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/internal.py to internal.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/distance.py to distance.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/rdf.py to rdf.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/geometry/sasa.py to sasa.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/scripts/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/scripts/mdinspect.py to mdinspect.cpython-39.pyc -byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/scripts/mdconvert.py to mdconvert.cpython-39.pyc +byte-compiling /build/reproducible-path/mdtraj-1.9.5/debian/python3-mdtraj/usr/lib/python3.9/dist-packages/mdtraj/utils/validation.py to validation.cpython-39.pyc running install_egg_info running egg_info creating mdtraj.egg-info @@ -2929,8 +2964,8 @@ dpkg-gencontrol: warning: package python3-mdtraj: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python3-mdtraj-dbgsym' in '../python3-mdtraj-dbgsym_1.9.5-1_i386.deb'. dpkg-deb: building package 'python-mdtraj-doc' in '../python-mdtraj-doc_1.9.5-1_all.deb'. +dpkg-deb: building package 'python3-mdtraj-dbgsym' in '../python3-mdtraj-dbgsym_1.9.5-1_i386.deb'. dpkg-deb: building package 'python3-mdtraj' in '../python3-mdtraj_1.9.5-1_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../mdtraj_1.9.5-1_i386.changes @@ -2940,12 +2975,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/13768/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/13768/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/104979 and its subdirectories -I: Current time: Fri Feb 7 17:10:37 -12 2025 -I: pbuilder-time-stamp: 1738991437 +I: removing directory /srv/workspace/pbuilder/13768 and its subdirectories +I: Current time: Sun Jan 7 13:07:21 +14 2024 +I: pbuilder-time-stamp: 1704582441