Diff of the two buildlogs: -- --- b1/build.log 2024-05-25 00:00:03.418628258 +0000 +++ b2/build.log 2024-05-25 00:08:09.361965456 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jun 26 18:17:03 -12 2025 -I: pbuilder-time-stamp: 1751005023 +I: Current time: Sat May 25 14:00:07 +14 2024 +I: pbuilder-time-stamp: 1716595207 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration @@ -28,53 +28,85 @@ dpkg-source: info: applying simde.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/5081/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/30623/tmp/hooks/D01_modify_environment starting +debug: Running on infom07-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 25 00:00 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/30623/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/30623/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' - DISTRIBUTION='experimental' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' + DIRSTACK=() + DISTRIBUTION=experimental + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='539252e4110c450886668d124b1baafd' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='5081' - PS1='# ' - PS2='> ' + INVOCATION_ID=ef7c23a1df5e4dedabf1fb19845c7ad4 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=30623 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.B108a2Fg/pbuilderrc_QweS --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.B108a2Fg/b1 --logfile b1/build.log scrappie_1.4.2-9~0exp0simde.dsc' - SUDO_GID='111' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.B108a2Fg/pbuilderrc_6H0X --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.B108a2Fg/b2 --logfile b2/build.log scrappie_1.4.2-9~0exp0simde.dsc' + SUDO_GID=111 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom08-i386 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 26 13:57 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/5081/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 17 15:01 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/30623/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -198,7 +230,7 @@ Get: 76 http://deb.debian.org/debian unstable/main i386 libopenblas-pthread-dev i386 0.3.27+ds-2 [3520 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 libopenblas-dev i386 0.3.27+ds-2 [52.3 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 libsimde-dev all 0.8.2-1 [465 kB] -Fetched 56.8 MB in 3s (22.5 MB/s) +Fetched 56.8 MB in 3s (19.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19703 files and directories currently installed.) @@ -532,7 +564,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/scrappie-1.4.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../scrappie_1.4.2-9~0exp0simde_source.changes +I: user script /srv/workspace/pbuilder/30623/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for experimental +I: user script /srv/workspace/pbuilder/30623/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/scrappie-1.4.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../scrappie_1.4.2-9~0exp0simde_source.changes dpkg-buildpackage: info: source package scrappie dpkg-buildpackage: info: source version 1.4.2-9~0exp0simde dpkg-buildpackage: info: source distribution experimental @@ -591,7 +627,7 @@ -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found --- Configuring done (0.5s) +-- Configuring done (0.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -629,7 +665,7 @@ -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found --- Configuring done (0.5s) +-- Configuring done (1.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -667,7 +703,7 @@ -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found --- Configuring done (0.5s) +-- Configuring done (1.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -707,7 +743,7 @@ -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found --- Configuring done (0.5s) +-- Configuring done (1.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -733,7 +769,7 @@ dh_auto_build --builddirectory build_${SIMD} && \ cp build_${SIMD}/scrappie build_${SIMD}/scrappie-${SIMD} ; \ done - cd build_ssse3 && make -j6 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_ssse3 && make -j5 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' /usr/bin/cmake -S/build/reproducible-path/scrappie-1.4.2 -B/build/reproducible-path/scrappie-1.4.2/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/scrappie-1.4.2/build_ssse3/CMakeFiles /build/reproducible-path/scrappie-1.4.2/build_ssse3//CMakeFiles/progress.marks @@ -751,20 +787,20 @@ make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/build make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' -[ 5%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o -[ 5%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o +[ 2%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/decode.c.o -MF CMakeFiles/scrappie_objects.dir/src/decode.c.o.d -o CMakeFiles/scrappie_objects.dir/src/decode.c.o -c /build/reproducible-path/scrappie-1.4.2/src/decode.c -[ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/layers.c.o -MF CMakeFiles/scrappie_objects.dir/src/layers.c.o.d -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /build/reproducible-path/scrappie-1.4.2/src/layers.c -[ 10%] Building C object CMakeFiles/test_interface.dir/src/test_interface.c.o -[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o -[ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o +[ 5%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -MF CMakeFiles/scrappie_objects.dir/src/event_detection.c.o.d -o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -c /build/reproducible-path/scrappie-1.4.2/src/event_detection.c -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/networks.c.o -MF CMakeFiles/scrappie_objects.dir/src/networks.c.o.d -o CMakeFiles/scrappie_objects.dir/src/networks.c.o -c /build/reproducible-path/scrappie-1.4.2/src/networks.c +[ 7%] Building C object CMakeFiles/test_interface.dir/src/test_interface.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/test_interface.dir/src/test_interface.c.o -MF CMakeFiles/test_interface.dir/src/test_interface.c.o.d -o CMakeFiles/test_interface.dir/src/test_interface.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test_interface.c -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -MF CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o.d -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/reproducible-path/scrappie-1.4.2/src/nnfeatures.c -[ 18%] Linking C executable test_interface +[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o +[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/layers.c.o -MF CMakeFiles/scrappie_objects.dir/src/layers.c.o.d -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /build/reproducible-path/scrappie-1.4.2/src/layers.c +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/networks.c.o -MF CMakeFiles/scrappie_objects.dir/src/networks.c.o.d -o CMakeFiles/scrappie_objects.dir/src/networks.c.o -c /build/reproducible-path/scrappie-1.4.2/src/networks.c +[ 15%] Linking C executable test_interface /usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 +[ 18%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -MF CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o.d -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/reproducible-path/scrappie-1.4.2/src/nnfeatures.c /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_interface.dir/src/test_interface.c.o -o test_interface make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' [ 18%] Built target test_interface @@ -800,26 +836,20 @@ make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' cd /build/reproducible-path/scrappie-1.4.2/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/scrappie-1.4.2 /build/reproducible-path/scrappie-1.4.2 /build/reproducible-path/scrappie-1.4.2/build_ssse3 /build/reproducible-path/scrappie-1.4.2/build_ssse3 /build/reproducible-path/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' -make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build -make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build +make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' +make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' -[ 44%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -[ 44%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o -[ 44%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o -[ 47%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -[ 44%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o +[ 36%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o +[ 39%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. 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CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit /build/reproducible-path/scrappie-1.4.2/src/scrappie_event_table.c: In function 'main_event_table': /build/reproducible-path/scrappie-1.4.2/src/scrappie_event_table.c:155:42: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 155 | fprintf(args.output, "%zu\t%zu\t%f\t%f\t%d\n", i, ev.start, ev.mean, ev.stdv, (int)ev.length); @@ -866,31 +916,17 @@ | | | | unsigned int uint64_t 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CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_util.c make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' -[ 97%] Built target scrappie -[100%] Linking C executable scrappie_unittest -/usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o 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/build/reproducible-path/scrappie-1.4.2/build_ssse3/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' - cd build_sse3 && make -j6 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_sse3 && make -j5 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_sse3' /usr/bin/cmake -S/build/reproducible-path/scrappie-1.4.2 -B/build/reproducible-path/scrappie-1.4.2/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/scrappie-1.4.2/build_sse3/CMakeFiles /build/reproducible-path/scrappie-1.4.2/build_sse3//CMakeFiles/progress.marks @@ -904,29 +940,29 @@ cd /build/reproducible-path/scrappie-1.4.2/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/scrappie-1.4.2 /build/reproducible-path/scrappie-1.4.2 /build/reproducible-path/scrappie-1.4.2/build_sse3 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CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_common.c -[ 21%] Built target test_interface [ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_matrix.c [ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o @@ -957,29 +993,37 @@ make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_sse3' cd /build/reproducible-path/scrappie-1.4.2/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/scrappie-1.4.2 /build/reproducible-path/scrappie-1.4.2 /build/reproducible-path/scrappie-1.4.2/build_sse3 /build/reproducible-path/scrappie-1.4.2/build_sse3 /build/reproducible-path/scrappie-1.4.2/build_sse3/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake "--color=" make[4]: 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+/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_events.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_events.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_events.c +[ 47%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 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-I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_map_to_sequence.c +[ 55%] Building C object CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_squiggle.c +[ 57%] Building C object CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o +[ 60%] Building C object CMakeFiles/scrappie.dir/src/scrappie_help.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_subcommands.c +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_help.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_help.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_help.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_help.c +[ 63%] Building C object CMakeFiles/scrappie.dir/src/fast5_interface.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/fast5_interface.c.o -MF CMakeFiles/scrappie.dir/src/fast5_interface.c.o.d -o CMakeFiles/scrappie.dir/src/fast5_interface.c.o -c /build/reproducible-path/scrappie-1.4.2/src/fast5_interface.c +[ 65%] Building C object CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_event_table.c +[ 68%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_util.c -[ 50%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/scrappie_util.c -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_convolution.c -In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/math.h:27, - from /build/reproducible-path/scrappie-1.4.2/src/test/scrappie_util.c:4: -/usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - | ^~~~~~~ In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/i686-linux-gnu/13/include/stdint.h:9, @@ -993,38 +1037,6 @@ /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ -[ 52%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_raw.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_raw.c -[ 55%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_skeleton.c -[ 57%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_events.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_events.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_events.c -[ 60%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_mappy.c -[ 63%] Building C object CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_seqmappy.c -[ 65%] Building C object CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_squiggle.c -[ 68%] Building C object CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP 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-/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_signal.c -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration 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are deprecated, use _DEFAULT_SOURCE" + | ^~~~~~~ +[ 73%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_convolution.c +[ 76%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o 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directory '/build/reproducible-path/scrappie-1.4.2/build_sse3' -[ 97%] Built target scrappie +[ 92%] Built target scrappie +[ 94%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_squiggle.c +[ 97%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_util.c [100%] Linking C executable scrappie_unittest /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit @@ -1047,7 +1083,7 @@ make[3]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse3' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/scrappie-1.4.2/build_sse3/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse3' - cd build_sse2 && make -j6 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_sse2 && make -j5 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_sse2' /usr/bin/cmake -S/build/reproducible-path/scrappie-1.4.2 -B/build/reproducible-path/scrappie-1.4.2/build_sse2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/scrappie-1.4.2/build_sse2/CMakeFiles /build/reproducible-path/scrappie-1.4.2/build_sse2//CMakeFiles/progress.marks @@ -1066,24 +1102,24 @@ make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_sse2' make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_sse2' [ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o -[ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o +[ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o [ 7%] Building C object CMakeFiles/test_interface.dir/src/test_interface.c.o -[ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/decode.c.o -MF CMakeFiles/scrappie_objects.dir/src/decode.c.o.d -o CMakeFiles/scrappie_objects.dir/src/decode.c.o -c /build/reproducible-path/scrappie-1.4.2/src/decode.c +[ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/test_interface.dir/src/test_interface.c.o -MF CMakeFiles/test_interface.dir/src/test_interface.c.o.d -o CMakeFiles/test_interface.dir/src/test_interface.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test_interface.c -[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/decode.c.o -MF CMakeFiles/scrappie_objects.dir/src/decode.c.o.d -o CMakeFiles/scrappie_objects.dir/src/decode.c.o -c /build/reproducible-path/scrappie-1.4.2/src/decode.c /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -MF CMakeFiles/scrappie_objects.dir/src/event_detection.c.o.d -o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -c /build/reproducible-path/scrappie-1.4.2/src/event_detection.c -[ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -MF CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o.d -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/reproducible-path/scrappie-1.4.2/src/nnfeatures.c /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/layers.c.o -MF CMakeFiles/scrappie_objects.dir/src/layers.c.o.d -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /build/reproducible-path/scrappie-1.4.2/src/layers.c +[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/networks.c.o -MF CMakeFiles/scrappie_objects.dir/src/networks.c.o.d -o CMakeFiles/scrappie_objects.dir/src/networks.c.o -c /build/reproducible-path/scrappie-1.4.2/src/networks.c +[ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -MF CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o.d -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/reproducible-path/scrappie-1.4.2/src/nnfeatures.c [ 18%] Linking C executable test_interface /usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_interface.dir/src/test_interface.c.o -o test_interface make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse2' +[ 18%] Built target test_interface [ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_common.c -[ 21%] Built target test_interface [ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_matrix.c [ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o @@ -1114,29 +1150,38 @@ make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_sse2' cd /build/reproducible-path/scrappie-1.4.2/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/scrappie-1.4.2 /build/reproducible-path/scrappie-1.4.2 /build/reproducible-path/scrappie-1.4.2/build_sse2 /build/reproducible-path/scrappie-1.4.2/build_sse2 /build/reproducible-path/scrappie-1.4.2/build_sse2/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse2' -make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build -make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse2' make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_sse2' +make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse2' +make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_sse2' -[ 36%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -[ 39%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -[ 42%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o +[ 39%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o +[ 39%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie.c.o -MF CMakeFiles/scrappie.dir/src/scrappie.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie.c +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_raw.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_raw.c +[ 42%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat 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CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/scrappie_test_runner.c -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -c 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-I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_seqmappy.c +[ 52%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong 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/build/reproducible-path/scrappie-1.4.2/src/scrappie_seqmappy.c -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_squiggle.c -[ 86%] Building C object CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_subcommands.c -[ 89%] Building C object CMakeFiles/scrappie.dir/src/scrappie_help.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_help.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_help.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_help.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_help.c -[ 92%] Linking C executable scrappie_unittest -/usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit -[ 97%] Building C object CMakeFiles/scrappie.dir/src/fast5_interface.c.o -[ 97%] Building C object CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/fast5_interface.c.o -MF CMakeFiles/scrappie.dir/src/fast5_interface.c.o.d -o CMakeFiles/scrappie.dir/src/fast5_interface.c.o -c /build/reproducible-path/scrappie-1.4.2/src/fast5_interface.c -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_event_table.c -make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse2' -[ 97%] Built target scrappie_unittest +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/scrappie_util.c /build/reproducible-path/scrappie-1.4.2/src/scrappie_event_table.c: In function 'main_event_table': /build/reproducible-path/scrappie-1.4.2/src/scrappie_event_table.c:155:42: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 155 | fprintf(args.output, "%zu\t%zu\t%f\t%f\t%d\n", i, ev.start, ev.mean, ev.stdv, (int)ev.length); @@ -1196,17 +1203,46 @@ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu -[100%] Linking C executable scrappie +In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/math.h:27, + from /build/reproducible-path/scrappie-1.4.2/src/test/scrappie_util.c:4: +/usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + | ^~~~~~~ +[ 73%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat 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CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_skeleton.c +[ 78%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_decoding.c +[ 81%] Linking C executable scrappie /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie.dir/src/scrappie.c.o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm +[ 84%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_event_detection.c +[ 86%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_elu.c make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse2' -[100%] Built target scrappie +[ 86%] Built target scrappie +[ 89%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_matrix.c +[ 92%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_signal.c +[ 94%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_squiggle.c +[ 97%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_util.c +[100%] Linking C executable scrappie_unittest +/usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit +make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse2' +[100%] Built target scrappie_unittest make[3]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse2' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/scrappie-1.4.2/build_sse2/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse2' dh_auto_build --builddirectory build_plain && \ cp build_plain/scrappie build_plain/scrappie-plain - cd build_plain && make -j6 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_plain && make -j5 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_plain' /usr/bin/cmake -S/build/reproducible-path/scrappie-1.4.2 -B/build/reproducible-path/scrappie-1.4.2/build_plain --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/scrappie-1.4.2/build_plain/CMakeFiles /build/reproducible-path/scrappie-1.4.2/build_plain//CMakeFiles/progress.marks @@ -1219,40 +1255,32 @@ make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_plain' cd /build/reproducible-path/scrappie-1.4.2/build_plain && /usr/bin/cmake 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-[ 2%] Building C object CMakeFiles/test_interface.dir/src/test_interface.c.o [ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o [ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o -[ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o +[ 7%] Building C object CMakeFiles/test_interface.dir/src/test_interface.c.o +[ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/layers.c.o -MF CMakeFiles/scrappie_objects.dir/src/layers.c.o.d -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/decode.c.o -MF CMakeFiles/scrappie_objects.dir/src/decode.c.o.d -o CMakeFiles/scrappie_objects.dir/src/decode.c.o -c /build/reproducible-path/scrappie-1.4.2/src/decode.c -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/layers.c.o -MF CMakeFiles/scrappie_objects.dir/src/layers.c.o.d -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /build/reproducible-path/scrappie-1.4.2/src/layers.c /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -MF CMakeFiles/scrappie_objects.dir/src/event_detection.c.o.d -o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -c /build/reproducible-path/scrappie-1.4.2/src/event_detection.c +[ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/networks.c.o -MF CMakeFiles/scrappie_objects.dir/src/networks.c.o.d -o CMakeFiles/scrappie_objects.dir/src/networks.c.o -c /build/reproducible-path/scrappie-1.4.2/src/networks.c -[ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -MF CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o.d -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/reproducible-path/scrappie-1.4.2/src/nnfeatures.c -In file included from /build/reproducible-path/scrappie-1.4.2/src/models/../util.h:10, - from /build/reproducible-path/scrappie-1.4.2/src/models/nanonet_events.h:4, - from /build/reproducible-path/scrappie-1.4.2/src/networks.c:2: -/build/reproducible-path/scrappie-1.4.2/src/models/../sse_mathfun.h: In function 'log_ps': -/build/reproducible-path/scrappie-1.4.2/src/models/../sse_mathfun.h:100:1: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] - 100 | static inline v4sf __attribute__((__always_inline__)) log_ps(v4sf x) { - | ^~~~~~ In file included from /build/reproducible-path/scrappie-1.4.2/src/util.h:10, from /build/reproducible-path/scrappie-1.4.2/src/decode.c:5: /build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h: In function 'log_ps': /build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h:100:1: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 100 | static inline v4sf __attribute__((__always_inline__)) log_ps(v4sf x) { | ^~~~~~ -In file included from /build/reproducible-path/scrappie-1.4.2/src/util.h:10, - from /build/reproducible-path/scrappie-1.4.2/src/nnfeatures.c:5: -/build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h: In function 'log_ps': -/build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h:100:1: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] +In file included from /build/reproducible-path/scrappie-1.4.2/src/models/../util.h:10, + from /build/reproducible-path/scrappie-1.4.2/src/models/nanonet_events.h:4, + from /build/reproducible-path/scrappie-1.4.2/src/networks.c:2: +/build/reproducible-path/scrappie-1.4.2/src/models/../sse_mathfun.h: In function 'log_ps': +/build/reproducible-path/scrappie-1.4.2/src/models/../sse_mathfun.h:100:1: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 100 | static inline v4sf __attribute__((__always_inline__)) log_ps(v4sf x) { | ^~~~~~ In file included from /build/reproducible-path/scrappie-1.4.2/src/util.h:10, @@ -1266,27 +1294,35 @@ /build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h:100:1: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 100 | static inline v4sf __attribute__((__always_inline__)) log_ps(v4sf x) { | ^~~~~~ -[ 18%] Linking C executable test_interface +[ 15%] Linking C executable test_interface /usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_interface.dir/src/test_interface.c.o -o test_interface make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_plain' +[ 18%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -MF CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o.d -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/reproducible-path/scrappie-1.4.2/src/nnfeatures.c +[ 18%] Built target test_interface [ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_common.c -[ 21%] Built target test_interface -[ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_matrix.c -[ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_seq_helpers.c In file included from /build/reproducible-path/scrappie-1.4.2/src/util.h:10, from /build/reproducible-path/scrappie-1.4.2/src/scrappie_common.c:3: /build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h: In function 'log_ps': /build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h:100:1: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 100 | static inline v4sf __attribute__((__always_inline__)) log_ps(v4sf x) { | ^~~~~~ +In file included from /build/reproducible-path/scrappie-1.4.2/src/util.h:10, + from /build/reproducible-path/scrappie-1.4.2/src/nnfeatures.c:5: +/build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h: In function 'log_ps': +/build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h:100:1: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] + 100 | static inline v4sf __attribute__((__always_inline__)) log_ps(v4sf x) { + | ^~~~~~ +[ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_matrix.c /build/reproducible-path/scrappie-1.4.2/src/scrappie_matrix.c: In function 'row_normalise_inplace': /build/reproducible-path/scrappie-1.4.2/src/scrappie_matrix.c:391:18: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 391 | const __m128 mask = _mm_cmpgt_ps(_mm_set_ps(i >= 1, i >= 2, i >= 3, 0), _mm_set1_ps(0.0f)); | ^~~~ +[ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_seq_helpers.c [ 28%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/util.c.o -MF CMakeFiles/scrappie_objects.dir/src/util.c.o.d -o CMakeFiles/scrappie_objects.dir/src/util.c.o -c /build/reproducible-path/scrappie-1.4.2/src/util.c [ 31%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o @@ -1319,23 +1355,27 @@ make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_plain' cd /build/reproducible-path/scrappie-1.4.2/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/scrappie-1.4.2 /build/reproducible-path/scrappie-1.4.2 /build/reproducible-path/scrappie-1.4.2/build_plain /build/reproducible-path/scrappie-1.4.2/build_plain /build/reproducible-path/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_plain' -make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_plain' -make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_plain' +make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_plain' +make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build make[4]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_plain' -[ 36%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o -[ 47%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -[ 47%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -[ 47%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie.c.o -MF CMakeFiles/scrappie.dir/src/scrappie.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie.c -[ 47%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/scrappie_test_runner.c -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_events.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_events.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_events.c +[ 39%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o +[ 39%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o +[ 42%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o /usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 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-I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/scrappie_util.c +[ 44%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/scrappie_test_runner.c +[ 47%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie.c.o -MF CMakeFiles/scrappie.dir/src/scrappie.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie.c +In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/math.h:27, + from /build/reproducible-path/scrappie-1.4.2/src/test/scrappie_util.c:4: +/usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + | ^~~~~~~ In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/i686-linux-gnu/13/include/stdint.h:9, @@ -1349,89 +1389,108 @@ /usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ -[ 52%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_mappy.c -[ 55%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/scrappie_util.c -In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/math.h:27, - from /build/reproducible-path/scrappie-1.4.2/src/test/scrappie_util.c:4: -/usr/include/features.h:196:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - 196 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - | ^~~~~~~ +[ 50%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_raw.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_raw.c In file included from /build/reproducible-path/scrappie-1.4.2/src/util.h:10, from /build/reproducible-path/scrappie-1.4.2/src/test/test_map_to_sequence.c:7: /build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h: In function 'log_ps': /build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h:100:1: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 100 | static inline v4sf __attribute__((__always_inline__)) log_ps(v4sf x) { | ^~~~~~ +[ 52%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_convolution.c In file included from /build/reproducible-path/scrappie-1.4.2/src/util.h:10, from /build/reproducible-path/scrappie-1.4.2/src/scrappie_raw.c:19: /build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h: In function 'log_ps': /build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h:100:1: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 100 | static inline v4sf __attribute__((__always_inline__)) log_ps(v4sf x) { | ^~~~~~ +[ 55%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o +[ 57%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_decoding.c +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_skeleton.c +[ 60%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_elu.c +[ 63%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_event_detection.c In file included from /build/reproducible-path/scrappie-1.4.2/src/util.h:10, - from /build/reproducible-path/scrappie-1.4.2/src/scrappie_events.c:22: + from /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_decoding.c:11: /build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h: In function 'log_ps': /build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h:100:1: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 100 | static inline v4sf __attribute__((__always_inline__)) log_ps(v4sf x) { | ^~~~~~ -[ 57%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -c 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-/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_squiggle.c -[ 71%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong 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/build/reproducible-path/scrappie-1.4.2/src/scrappie_subcommands.c +[ 65%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_matrix.c +[ 68%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_events.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_events.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_events.c In file included from /build/reproducible-path/scrappie-1.4.2/src/util.h:10, - from /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_decoding.c:11: + from /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_event_detection.c:9: /build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h: In function 'log_ps': /build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h:100:1: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 100 | static inline v4sf __attribute__((__always_inline__)) log_ps(v4sf x) { | ^~~~~~ +[ 71%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_signal.c +[ 73%] Building C object 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CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_event_detection.c -[ 81%] Building C object CMakeFiles/scrappie.dir/src/fast5_interface.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/fast5_interface.c.o -MF CMakeFiles/scrappie.dir/src/fast5_interface.c.o.d -o CMakeFiles/scrappie.dir/src/fast5_interface.c.o -c /build/reproducible-path/scrappie-1.4.2/src/fast5_interface.c -[ 84%] Building C object CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_event_table.c -[ 86%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_matrix.c +[ 81%] Building C object CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_seqmappy.c +[ 84%] Building C object CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_squiggle.c In file included from /build/reproducible-path/scrappie-1.4.2/src/util.h:10, - from /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_event_detection.c:9: + from /build/reproducible-path/scrappie-1.4.2/src/test/test_util.c:5: /build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h: In function 'log_ps': /build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h:100:1: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 100 | static inline v4sf __attribute__((__always_inline__)) log_ps(v4sf x) { | ^~~~~~ In file included from /build/reproducible-path/scrappie-1.4.2/src/util.h:10, + from /build/reproducible-path/scrappie-1.4.2/src/scrappie_mappy.c:13: +/build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h: In function 'log_ps': +/build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h:100:1: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] + 100 | static inline v4sf __attribute__((__always_inline__)) log_ps(v4sf x) { + | ^~~~~~ +[ 86%] Linking C executable scrappie_unittest +/usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 +In file included from /build/reproducible-path/scrappie-1.4.2/src/util.h:10, + from /build/reproducible-path/scrappie-1.4.2/src/scrappie_seqmappy.c:14: +/build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h: In function 'log_ps': +/build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h:100:1: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] + 100 | static inline v4sf __attribute__((__always_inline__)) log_ps(v4sf x) { + | ^~~~~~ +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit +[ 89%] Building C object CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_subcommands.c +[ 92%] Building C object CMakeFiles/scrappie.dir/src/scrappie_help.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_help.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_help.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_help.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_help.c +[ 94%] Building C object CMakeFiles/scrappie.dir/src/fast5_interface.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/fast5_interface.c.o -MF CMakeFiles/scrappie.dir/src/fast5_interface.c.o.d -o CMakeFiles/scrappie.dir/src/fast5_interface.c.o -c /build/reproducible-path/scrappie-1.4.2/src/fast5_interface.c +[ 97%] Building C object CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o +/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -c /build/reproducible-path/scrappie-1.4.2/src/scrappie_event_table.c +make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_plain' +[ 97%] Built target scrappie_unittest +In file included from /build/reproducible-path/scrappie-1.4.2/src/util.h:10, from /build/reproducible-path/scrappie-1.4.2/src/fast5_interface.c:10: /build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h: In function 'log_ps': /build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h:100:1: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] @@ -1443,8 +1502,6 @@ /build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h:100:1: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 100 | static inline v4sf __attribute__((__always_inline__)) log_ps(v4sf x) { | ^~~~~~ -[ 89%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_signal.c /build/reproducible-path/scrappie-1.4.2/src/scrappie_event_table.c: In function 'main_event_table': /build/reproducible-path/scrappie-1.4.2/src/scrappie_event_table.c:155:42: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 155 | fprintf(args.output, "%zu\t%zu\t%f\t%f\t%d\n", i, ev.start, ev.mean, ev.stdv, (int)ev.length); @@ -1452,32 +1509,11 @@ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu -[ 92%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_squiggle.c -[ 94%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -/usr/bin/cc -I/build/reproducible-path/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/reproducible-path/scrappie-1.4.2/src/test -I/build/reproducible-path/scrappie-1.4.2/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -c /build/reproducible-path/scrappie-1.4.2/src/test/test_util.c -[ 97%] Linking C executable scrappie +[100%] Linking C executable scrappie /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie.dir/src/scrappie.c.o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm -In file included from /build/reproducible-path/scrappie-1.4.2/src/util.h:10, - from /build/reproducible-path/scrappie-1.4.2/src/test/test_scrappie_signal.c:10: -/build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h: In function 'log_ps': -/build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h:100:1: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] - 100 | static inline v4sf __attribute__((__always_inline__)) log_ps(v4sf x) { - | ^~~~~~ -In file included from /build/reproducible-path/scrappie-1.4.2/src/util.h:10, - from /build/reproducible-path/scrappie-1.4.2/src/test/test_util.c:5: -/build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h: In function 'log_ps': -/build/reproducible-path/scrappie-1.4.2/src/sse_mathfun.h:100:1: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] - 100 | static inline v4sf __attribute__((__always_inline__)) log_ps(v4sf x) { - | ^~~~~~ -[100%] Linking C executable scrappie_unittest -/usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_plain' [100%] Built target scrappie -make[4]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_plain' -[100%] Built target scrappie_unittest make[3]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_plain' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/scrappie-1.4.2/build_plain/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_plain' @@ -1488,10 +1524,10 @@ for SIMD in ssse3 sse3 sse2 ; do \ dh_auto_test --builddirectory build_${SIMD} ; \ done - cd build_ssse3 && make -j6 test ARGS\+=--verbose ARGS\+=-j6 + cd build_ssse3 && make -j5 test ARGS\+=--verbose ARGS\+=-j5 make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j6 +/usr/bin/ctest --force-new-ctest-process --verbose -j5 UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/build_ssse3/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/build_ssse3/DartConfiguration.tcl Test project /build/reproducible-path/scrappie-1.4.2/build_ssse3 @@ -1531,12 +1567,6 @@ 5: Test command: /build/reproducible-path/scrappie-1.4.2/build_ssse3/scrappie "raw" "--model" "rgrgr_r941" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" 5: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_ssse3 5: Test timeout computed to be: 10000000 -test 6 - Start 6: test_rawrgrgr_r10_call - -6: Test command: /build/reproducible-path/scrappie-1.4.2/build_ssse3/scrappie "raw" "--model" "rgrgr_r10" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" -6: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_ssse3 -6: Test timeout computed to be: 10000000 1: 1: 1: CUnit - A unit testing framework for C - Version 2.1-3 @@ -1690,7 +1720,6 @@ 1: passed 1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 1: passed -4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.295786, "nblock" : 16158, "sequence_length" : 9512, "blocks_per_base" : 1.698696, "nsample" : 81106, "trim" : [ 200, 80990 ] } 1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 1: passed 1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 @@ -1917,22 +1946,39 @@ 1: tests 71 71 71 0 0 1: asserts 506 506 506 0 n/a 1: -1: Elapsed time = 3.795 seconds - 1/19 Test #1: unittest ......................... Passed 5.47 sec -test 7 - Start 7: test_rawrnnrf_r94_call +1: Elapsed time = 4.499 seconds + 1/19 Test #1: unittest ......................... Passed 7.46 sec +test 6 + Start 6: test_rawrgrgr_r10_call -7: Test command: /build/reproducible-path/scrappie-1.4.2/build_ssse3/scrappie "raw" "--model" "rnnrf_r94" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" -7: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_ssse3 -7: Test timeout computed to be: 10000000 -5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.278788, "nblock" : 16158, "sequence_length" : 9559, "blocks_per_base" : 1.690344, "nsample" : 81106, "trim" : [ 200, 80990 ] } +6: Test command: /build/reproducible-path/scrappie-1.4.2/build_ssse3/scrappie "raw" "--model" "rgrgr_r10" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" +6: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_ssse3 +6: Test timeout computed to be: 10000000 +4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.295786, "nblock" : 16158, "sequence_length" : 9512, "blocks_per_base" : 1.698696, "nsample" : 81106, "trim" : [ 200, 80990 ] } 2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.273149, "nevent" : 16119, "sequence_length" : 9414, "events_per_base" : 1.712237 } +5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.278788, "nblock" : 16158, "sequence_length" : 9559, "blocks_per_base" : 1.690344, "nsample" : 81106, "trim" : [ 200, 80990 ] } 3: GCAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTATGTCTTAACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCAACTACTCTCCGGGAGACTGAGGCAGGAGAATCCTTAAACCCGGGGCAGGGTTGAAGTGAGCCGAGGTCTCACCTCATTGCACTCCAGCCTATGGGTGACAGGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAAATCAGTTTCCCGTAATTATTTTAGAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTAGTAGGTATCTAATAGAAAGCGTTCATTTAAGGAATAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATGTATTCTGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTTTATTTCCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAAGAAGGTAATATAAAAATGGAGTATGAACAAAATTGAAATCCTTTGCTATGAAGTTGAAAATACTAGTTTGTACATGTAAGCCTGTACGATAATAAAAATATAAATATATAATTTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTAGTTGAATATTTCACTTTTCACGTACAACTTTCTCACAAAGTTGATAGTGTTTATTTCTATTTTTGTATGTGCAGCCTCATATTATTTGTCTTTTCTCGTTAGAGTATCATTTCAACTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAACACAAACGTTGTTGAAACTTGAGGTAGAATAAAATATTAAATATTTCTTTGCCTTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCTGGAAATGCAAAATTAGAACATGCCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTTTCCTCATCTTCCCTCATTTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTAGCAAGTTTTTCATTCATTGTTTTTTTTCCATGTATTTCTGTAAGCCTCTTGTTGCAATCTTCACCTTGGCGTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGGTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTTTTCTGCAGTACATAGTGCGTAATGGCCTCAATGGTAGCTACTGTATTGATGGAAGTATTGCCATACTCCCTTCATATCTAAACCAGAGATGGTGATCTTTCTTAAGGGCCGGATAACGAACATTTTTGTGCTTATGGACCACGTAGTTTCTGTCTCACCTGGCCCGGCTCTACTGTATTGTAGAAGCAGCCATGGGCGTCTCTATGTGAATGGGCGTGACTGTGTTTTCAAAAGCAACAGTATGTGCAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTGGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCGCTCTTCCTGTTGCTTTGGCAATGCTTATTTATTTTTGCCAGGTTTTCTTCCTTATACTCTACAAAGGTCTTTCTGATCCTCTGAGCTGTATCAGATGCCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTATGTTTCCCTGACTTTGGGTGTGAGTTCTTGAAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTATTAGGTTGTAGATTTCGAGCTTTTGATCTCAAAGATCAGCTGTGCATTTAAAAAACACATATGCCTGGGCCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCTAGATAAGAAGTGCCCCCAAAATATATATTGAATAAAAAGCAATAAAACAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTATTTACTAACTTCTGATACAGACTCAGACAGGCACTTAGAATAACTGCCTTTAAAAGTCATGGATGTTCAAATGCCGTAATGGAACACTATTCACCAACAGAGATGTTGTGGACTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAAAGTGAGTTAGCAAATGCTGTTAGAAACTGTCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACAGTTCCATTAGTATTTGTGCCAAGTGCCACAAGTTATCTTCCTCAAGAATGAATCTGCTTTTGTGATCTTATTTGAGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTAAGGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGCTTCTAGTTTTTTTGTTTGTTTGTTGTTTTTAAATGGGGTCTTGCTCTGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGGTCTCACTGTGTTTCCCAGGCTGATCTTGTGAACTCCGGTCCGTAGTCACGCCCACCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCTTATGCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTCTTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCTATACTGTTGCCCAGGCGGTCCTAGACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATCCTATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGACCATAGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTGTAGCCTTAGAGAGGGCTGTCCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTGAGGGCCACTGAGGGTCATGGTGGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGAGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTCTTCTTTACTTACAGTGTTTTTGGTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACGGCGTGAGGGCTGCTTTTGGAACAAATTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTGAAACATTTAATGACTTTGTTCTTGTTTAAATAAGTAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATTGTAAATATTTCATTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATATTCCTTATCAAGGAAGCTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATATGATAAGTGATTGTCACCAGATGCAAAATATTGACTGTGTGTCAATACAGCTTCATGAAATTATTAACATTGCCTTGAGACAGACCTAAATGAATCAAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCCAGATAGAGATTATATAGAAGTAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTAGAAACACTTCATTTTAATTTCTTAGGGAGTGGATAGGAAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAAGACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTTTGCAACATGGGAACCACCCCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGAACGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAATCTCATGTCGGTTCCCTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTCCAGCAATTAGCCCAAAGTCCAAGTCCAAAGTCTCATCTGAGATAAAGGCCAAGATCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAAGGGCTGTAGGCCCCAAAGTCTGCAATCCAACTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCGCATCCAGCCCACTGATGCAAGTGGGCTCCCCACAACCTCATGCGAAAAGCTCTCGACCTCTGGCTCCATGCCTCATCCAGCCCACTGATGCAAGAGTGGGCTCCAGCAATCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTACCTCTCTGCTGTTTTCACAGGCTGGCGTTGGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCTGCCATTCTGGGGTCTGGAGGATGGTGGCCCTCTTCTCATAGCTCCCACTAGGCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCATAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCAGGCATTTCTATACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTGCTGTGCACCACATGTAAGCCGCCAAGGCTTAGAACTTACACTCTCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCAAGCAGCAAGGCCCTGGCCCACAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATAGGCTGCCACGTGAAGACCTTGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAAATGGGTTTTTTCTTTCTACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGGAATCAGCCAGGTCACCTGTTGAGATGCTTTGCTGTAGAAATTTCTTCCACAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAACAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCAACCATCTAACAAGTCTCTAGGAAATTTGCAAACTTTCCACTTCTTCCTGTCTTCTAGGCCCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCGAACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGTGGAGGTTAGGAAGTCAAGGTTGAGGTCCCTACATCTAGCAAGGGCTTTCTTGCTGCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAAACAAGTGTAGAGATCCTTTTATAATAAAACCATTCTCAATAACCCCTCCTTAGTAACAATGAATTATTCATTCATGGGGATAGAGCCCTTATGTGAAGCAATCATCTTTTAATGCAGCTTCTCTTCCAATACTGCCACTACAGGATTAAGTTTCCAACATGAACTTTGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCGCCGTTACAAATTAGTGAAATAATGTAGTACTTTCTCCCACAACTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTATATTTGTTAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTCTCTGTAATTATAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACAGTAGTCCTCATAACATCTCAGTAGATTCTTGGAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTATTCTGTAGATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATTATCACCAGATGAGGAGAAACAGGGTTTTGCTTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCATATTCACCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGGTGCATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTGTAAAGTATTGACAGTAATATTATAATAAAATGTCATCACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTGCCCAAGGCTTTGACTCTAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGGTATAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCCGCGCCTCATCCTATTTTCCTGTTGCTTGCTCTAGAACTCACCATCTGGTATCCAGAGTTAGGTATTGTCTTCATATTGCCTTTTCAGTGTAGAATCACCCTGTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCGGCCATCCCTTCACAACAATTAGGACTTTCACCGTTTTTAGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAGTGCTGACATTTCTGCAAACATGTGATTTTTTAAATGTATTTCATTGCAAGAATCTGGCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGAAGTTTAAAATATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTAACCAGCAATACGTAGT 3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.319873, "nblock" : 12818, "sequence_length" : 4612, "blocks_per_base" : 2.779271, "nsample" : 64395, "trim" : [ 200, 64290 ] } 3: CTTCCGTTCGAGTTACGTGTTATCTTTGCCTGCAATCCATCTATCTTCGGCGTCTGCTTGGGTGACATACCCATGGAAACTATAATTTTTTTAACAATTGGAAATTCTTCAGTTTTTATATTTAACAGTTTTTGATTTTCTAACTGTGAAAATATATGGACCTGATTAGTTTTGTATATTTGCGCAATATTGGCTAACAATATTTTTCTGAATTTACTTACTAATTCTCCAGCATAGATTCTTATGGGACTGTCATATATTAATCATGCGATTATGAATATGTGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTGCTTTATTGTCCTGGCTGGAATATTTCGCACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTTAGTATTTCAACAGGTTTTTGGGAACTGGTGATGTTTGATTACATGGAATCACGGTTCTTTACTGGTGATTTGACATTTTGTTACCATCACCTGAACTTGGTATTATCCAGTGATTGTAGTCTTTTATCCATATCCTCCTCACCCGTTTCCCCAGTCCTCAAGTCCGTTAGCATCATTTGCCACCTTTTGCATCCTCATACTGATGAAGATGATGTTTGTTTCATTCCTGAGTTACTTCGCGAATGTGATCTCCATTCCATTCAAATTGCTGAAAATGCATTATTTCGTTCCTTTTTGTGGCTGGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTGATGGGCATTTGACTGGTTTTCATATTTTTTCCAATTGCAAATTGGTGCTGCTATAAACGCCATTTTGGCACTGTACATTACGTATCTATTTCGTATAATGGCTTCTTCTGGGCCAAGGTAGGTCTAAGATCTGCTTTTAGTTCTTTAAAGATCTCCTTTACGGCTAATGGTTATACTGGATTTACATTCCATCAACATTGTTAGGTGTTTTCCTTTTCACCAGTCACAACATCTGTGTTTTGATTTTTTTATTAGGGGCCATTCTTTCAGGGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTTTAATAGGTTTGAGGCCATTTATATCTTCTTTGAAATTGTCTATTCATGTCCTTAACTTTTTGATAGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAATTTTCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTAGTTGGGTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCAGAAGTCTTTTACTAACCCAATGTCGAGGTTTTTTTCAACGTTATCTTCTAGAATTTTTTTACCGGGTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTGGATCCAGTTTCATTCTTCGACATGGCAGGTTTGAGTGATGTCATTTGTTGGTCGGGTCCTTTCCCCACTTCATATTTTGTTTGTTTGTTGAGATCTTGAGATTGGCTGTACGTGTTTAGCTTTATCTCTTGGTTCTCTATTCTCTTCATTGGTCTTATGCCTGTTTTTTATACCAGTACCATGCTGTTTTTGCTGATGGTGGCCATTATAGTTTGAAGTCAAATGTAATTACCTCAATTTGTTCTTTACTTAATCTTTACTTTGGCTGGGGCCTCTTTTTGGTTCCATACCGATTTTAGGATTGTTTTTCTCATTCTGTAGAATATTAGGTAGTATTTTTGATGAGTGCATTAGATTTGTAGGTACTTTTGGCGTATATGGTCATTTCTATGTGATTTACTCATCATGAGAATGGATGTATTTCCATTTGTTGTGTATGATTTCTTTTTTTCAGCAGTGTTTTGTTGTTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAGTATAGTCAAATATATATATATATATATATATTTACGCTAATATAAAGTTGGGGATTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGGCTATAGCGGGCTACTGATTTGTGTACATTAATTTTGTATCTAGGCTTTGCTGGAATTCATTTTAACAGTTCAGGAACTTTTAGTTTGGAGTCTTTTGGGTTTCTAGGTATACGATCATATCATCAGCAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTACTCTGGCTGGGACTTTATGTTGAAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCCGCACGGGAAATGCTTTCTTTTTCCATTAAATGTCTAATGTTGTTGGCTGTAGGTTTTGTATCACAGGTGGTTTTTATTACCTTAAACGCCTTCTACGTAGATTTTACTGGGGACTTTAATCATAAAAGGATTACTGGATTTTTTTTGTCAAATATTTTTTTCTGTGTTTGTAGAGATGATCATGTGATTCTTATTTTTAATTCTGTTTTTATATTTATATCATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCCTAGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTAATACGTGGATTTGGATTCAGTTAGCTAAGTATTTTTATTGAGATTTTTGCATCGTTAATCAGTGATGGGTCTCAGTTTTATTTTTTTGTTATAATGTCCTTTCCTGGTTTTGATATTACAGTGATGCAGCTTCATTGGATGATTTAGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGGATTGGTACCAATTTTTCTTTGAATACCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAAACTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGTTGTATCTTTCAAGAATTTATCTCCTCTGAGTTTTTCGTTTATATTACGCCCACAGAGTGTCATAGTAGCCTCCGTGATCTTTTGTATTTCTGTATGCTGAATTTGTAATATCTCCCATTTCATTTTAAGTAAACTTATTTGGATCTTCTCTTTTTTTTTTTTCTTGGTTAATCTTACTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTGTTTATCTTTTTTTTTTTTTGTATATTTTTGTTTCAATTCCGGCTTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTCTGCTGGGTTTAGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGTGTGACCTTAGATTGTCTATTTATTACTTTTTCAGGGCTTTAGATGTAGGTTAATATTCTCGATTTCTATTATGTAGGTATAATGCTATAGAGATTCCTATTCTGGTGTATTTCGAGATTTGTTTTCAGATTTGGGGAGCTCCTTTGCTTGGTTTTGTAGTACTCAGTATTTGTCTGAAAAATACTATCTTCCTTCATTTATAAACTTAGTTTCCTGGATACAAATTCTTGGCTATTTGTTTAGTTTAAAGACTACCGGTAGGACCCCAATCCACTTGTCTTTGCTGTATCCCAGTTTTGATAGGTTGTGTCCTACTATTGTTCAGTTGAGATTTTTTATTTCTATCTGGTTCATTGTTCACCCAATGATTTTTTCAGGATTGTTAATTTGATGTATTTGCAATGTCTTTGAAATTTCTTTTAGAGGTTGGTTCAATCTTAATTCCTATAGTCTGACATAGTACTTGTCATTTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTAGCCTATATATATTTCTATATTAGAGGAATGTTCCATGTGCTGATGAATAAGTCTTATGTTTATTTGTTATTGCGTCTTCTCCCTTATCCCTGTAAATCCGTTGTTGTAAGGAGTGTAGTTTAAAGTACATTGTTTTTCTTTGTTAACTTTTCTATCTTGATGATCTGTATCTAGTGCTGTCATTAGATGCTAAGTCCCTATTGCTGTGTTACCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTGGGGCGCTCAGTATTAGGCACCCATGTTTAGGATTGTGATATTTTTCGTTCGTCCTTTTATCATTATAATGTCTCTCTTTGTATTTTTTACCGGCTGTTGCTTCGTTTGTTTTGTCTGATACAGAATAGTTATTCCTGCTTGCTTTTTAGTGTCCATTGCATGGGATATCTTTCTACCTTTACCGTATATGAGTCCTTAGTATTGGTGAGTCTAGTAGAGACAGTAGATACTTAGTTAGGTAATTCTCCATTCTGCCATTCTGTATCTTTTTAGGTGGAGCGTAGGCCATTTATTCAGTGTTAGTATTGAGATGGTACTATTCTATTCATCGCGATATTTGGTGCCTAGATACCTTGGTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGAGGATTAAACGCAAAAACGGAACGCCGAA 3: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.590575, "nblock" : 5778, "sequence_length" : 2399, "blocks_per_base" : 2.408504, "nsample" : 29150, "trim" : [ 200, 29090 ] } 3: TCGGTGCGCATTCAAGCCAACCCTACCTCCTTCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTCGCGCCCCTTCCGCTTGAATCGCCTTCACTAAGTATGTTGGTCCCACATGATAATTCGTAGATTGCATCGACTCCGTTTCCGAATGAACGTGGATCGGCATTTCAGTAGTAGGCTGGGGCGGATGGAAAAATCAGCGTGCCCTCTCCACAATCGATCATCCGTTTGTCGGCCGGTACGGTAGGACCAGTCGAACTACTCAACCATTACCTAGATGAGGAATCCGTTGATTTTGCATCGTTGGGATCAGTTGGTAAATTCAATAGAATAGTTGTCCTAGACAGGTTGATGGATGGGAGAACAAAGCGGGGCCATGGGCGGGATAATGGGCGGTTGGAAATGGGATACAGCTCCATTCAGCCCTACACTTCCATTCCTCGTATGCTACGATGAATCAGGCCATGCATATCGCTTTTATTGGCCATCAGTATAATTCCAGCCTACCGATATCGATCCATCCTAATTAAGTAGGTGGCTCTCAATGGATCAAGAGATTTAAACATCACAGGTAGGATGATCGTCAGGACTCAGACCTTCAGGAATAATCATGCGCCACCTCCTTTCACATGTCATTCAGTGTGGTATGGTAGGGTAAAATCACCTTCATTCGTACTTGCCTTCAGGCGATTTCAGATAGGTTTGAAACGAATCTGTTGGTATCGGACGAAAATTGGATCAACATACATCAGTAAACTGCATTCCGCTCGACATAGCTCTGGACTTTAGCATAGATACATTAGGCTGGCATGAATTGTGGGAGGAGCCCTCGGAATGGACTTGTCTGGGAGAATTTGAGATCCTAAAAGTGAGATGGCACTACTCTACTCCTCGTCGATGGATCCGCTTGTACAATACAATCCAATTTCTAGATGAATGAAATAGTAGGTGGTTGTGGGCCAGCATGGAGCAGGACCCTTCACTACAGCCACCTCCGATGCGGGGTTCATTGAGGTGCATTCTGCGTGCCTCTGTCGTGCAGGTACCTTAATAAGCCGGGAGGCATTTCAAAGCTGAATCAGGAGGTAAAAATGAGTAGGATTTTAAGCCGCCGAATGGGAAGAACATCCTCTCGTTACCGGCGCAGAATGCACTTCCTGCCGGCCAGGCCAGTCAAAATGTACGCCAGCCAGGAATCAGGAATAAAGACTCAGTCAGTGAACGGCGAGCCCGCGCTGTGCTTCCGCCACAGTGGTAGAAAAACGTCCAGGATCAAATTACGTATTTCAATTCCGTGGAACAATTTGAAAGGCTAAAGCCTAGTAAAATTCAACTGGACGGACAGAGCCCGGAAAAAGCCTCCCTACCCCACTTCAAAGCGGAATGAACGCGGGCTCAAACCCTACAAAATCGCGTATTAAGTAACATTTCGCCCGTACTACACTATCAATCAGCCATTACCTCCGTAAAATACCAAATAGGTGAGAAAATTTGCATCCGCCATCGTACAGCCATCAAATTAGCCCACTCAAAATGGAATTTTGGATGAAAAAGGTATCATTCGACTCACCCCCTTACTTAATATTACGCTGCTCGCGTAAATATTTCCCTTTATACCATCCCAATGCATGCCCAATGCTTAGCATCATGTATTTCGACTCAACACCCACCATGCGCGATGGCGTAAATATAGAAACCAGATACGAGATTTCAGGCATGCCACGCCAGCGGTCAGTATAAACCGGGCAAAATCAAATAGCCGCCAGGCTCCGGACGGTGAGGCGAGATACCGGGTAGATGGGCTGGCGCGCTACATACTCCCAGAAATAGGGCATGGAAGCGCTCCATCGGCGCGATACCAAGATGGGCCGGCACCACTTCACGCCAGCATCTAAATTTTGCCTCGATAAAAGAAATCGTCCCCGACGGTACCGACCCATGAACAGGCATTTTGTTGCCCCGTCGCGCTTGCCACCCATTCCAAAATAGGTGGCGCCAGTACGAAGCGGGCTGAGCTAAACGCGCGCACCGCTCAATGAATCGCATCATCAGCCTTCATCCTCGTACCAGATACCATGGCCTCCTCCACAGCCCGAAAATAGCAAATATCCCTTCAATATGCGCTGATGGGCTGGAAACAGTATGAATAGGCGGGCGGGCCAATGGAATGGCTATCAACAGCCAGCGAATGAACCGCTTCCAATAGGTAGAGCTAAATGCGCGGAGAAATTTGGCCTCCCGTACCGGCCAAACCTAATCAAAATTCTCCTTCGACGGGCAGCTACAGGCGAACAGCGCCAGTGAAAAACATGCGGAGCGGATGGGGTCCGTATCGCTTCGACGAAACTGCCTCCAGCAGGAAAATCAGCTGTCTCATGAAGCGGTGCGCATGAAA - 2/19 Test #3: test_raw_call .................... Passed 9.45 sec + 2/19 Test #3: test_raw_call .................... Passed 12.92 sec +test 7 + Start 7: test_rawrnnrf_r94_call + +7: Test command: /build/reproducible-path/scrappie-1.4.2/build_ssse3/scrappie "raw" "--model" "rnnrf_r94" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" +7: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_ssse3 +7: Test timeout computed to be: 10000000 +4: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCATGGTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGTATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTCACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCAAAATATATATTGAATAAAACAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTAATGTGTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCGCTTGTTTAAACAAATGAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTGCAAGCATGGGGAACCACCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGGGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGTTCCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC +4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.179309, "nblock" : 12818, "sequence_length" : 4723, "blocks_per_base" : 2.713953, "nsample" : 64395, "trim" : [ 200, 64290 ] } +5: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAAGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCCATGGTTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGCTTAATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTATTTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCACATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCCAAAATATATATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCAGCTTGTTTAAACAAATGAAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTTTGCAAGCATGGGGAACCACCCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGAGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGACCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTGTTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGAGGCCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC +5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } +2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTTTCTTCTTTACTTACAGTGTTTTGGTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGGGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA +2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175321, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } +4: ATGAAACTATAATTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTATTTTCTAACTGTGAAAATATACTTGGACTGATTAGTTTTGTATATTTGCATATTATTTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAATTTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGAGATGATGTTTGGTTTTCATTCCTGGGGGTTACTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGCTGCTATAAACATATTTATTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } +4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG + 3/19 Test #4: test_rawrgrgr_r94_call ........... Passed 15.61 sec test 8 Start 8: test_event_table @@ -12472,8 +12518,6 @@ 8: 10528 54561 0.000000 -0.000000 1071916364 8: 10529 54564 0.000000 -26815622285277789840869391608915437442996955213344047991134989483837722352183070742993794835646927893013224740608578645434869119739139404535963905542848512.000000 1072354216 8: 10530 54571 2.000000 0.000000 1073234833 -4: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCATGGTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGTATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTCACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCAAAATATATATTGAATAAAACAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTAATGTGTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCGCTTGTTTAAACAAATGAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTGCAAGCATGGGGAACCACCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGGGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGTTCCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC -4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.179309, "nblock" : 12818, "sequence_length" : 4723, "blocks_per_base" : 2.713953, "nsample" : 64395, "trim" : [ 200, 64290 ] } 8: 10531 54576 -0.000000 -26815622285638290683877207446106063214095716302633806434104599084531935567287208415278574783824616363872712505718349842839245271745679507852275759397732352.000000 1073325337 8: 10532 54579 0.000000 -0.000000 1074116455 8: 10533 54586 -2.000000 0.000000 1073426596 @@ -14340,7 +14384,7 @@ 8: 12394 64075 0.000000 0.000000 1072576662 8: 12395 64078 -2.000000 -0.000000 1073238564 8: 12396 64083 0.000000 -2.000000 1072952450 - 3/19 Test #8: test_event_table ................. Passed 0.21 sec + 4/19 Test #8: test_event_table ................. Passed 0.15 sec test 9 Start 9: test_mappy @@ -14435,8 +14479,6 @@ 9: 83 76.677429 0 C 0.041604 0.315691 0.652851 9: 84 72.787994 0 C 0.041604 0.315691 0.652851 9: 85 76.492218 0 C 0.041604 0.315691 0.652851 -2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTTTCTTCTTTACTTACAGTGTTTTGGTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGGGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA -2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175321, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } 9: 86 75.010529 0 C 0.041604 0.315691 0.652851 9: 87 77.047852 0 C 0.041604 0.315691 0.652851 9: 88 72.973206 0 C 0.041604 0.315691 0.652851 @@ -46476,8 +46518,6 @@ 9: 32122 -1.402941 0 C 0.041604 0.315691 0.652851 9: 32123 -1.348981 0 C 0.041604 0.315691 0.652851 9: 32124 -1.524349 0 C 0.041604 0.315691 0.652851 -5: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAAGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCCATGGTTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGCTTAATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTATTTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCACATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCCAAAATATATATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCAGCTTGTTTAAACAAATGAAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTTTGCAAGCATGGGGAACCACCCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGAGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGACCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTGTTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGAGGCCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC -5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } 9: 32125 -1.510859 0 C 0.041604 0.315691 0.652851 9: 32126 -1.510859 0 C 0.041604 0.315691 0.652851 9: 32127 -1.375961 0 C 0.041604 0.315691 0.652851 @@ -78748,17 +78788,17 @@ 9: 64392 59.267578 0 C 0.041604 0.315691 0.652851 9: 64393 58.711945 0 C 0.041604 0.315691 0.652851 9: 64394 57.415466 0 C 0.041604 0.315691 0.652851 - 4/19 Test #9: test_mappy ....................... Passed 1.35 sec + 5/19 Test #9: test_mappy ....................... Passed 0.39 sec test 10 Start 10: test_seqmappy 10: Test command: /build/reproducible-path/scrappie-1.4.2/build_ssse3/scrappie "seqmappy" "/build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa" "/build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5" 10: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_ssse3 10: Test timeout computed to be: 10000000 -2: ATTTTTTTAACAATTGGAAATTCAGTTTTTTGTATTTAACGAATTTTTTTATTTTCTAACTGTGAAAATATATTGGACGGTCGTTTTGTATATTTGGCATATTATTTGTAATATTTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTGTATATTAATCATGCGATTATGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTGCTTTATTGTCCTGGCTGAATATTCTTTACTGTTGGATGGAAGGATGTTAATGACATCAAATATCTTGTTAAGATCTCAATTGCAAGATTTTATATTGTATTATTTTTTTAGTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTCTTTACTGGTGATTTGACATTTTGTACCTGTCACCTGAGCAGTATTATCAGTGGTAGTCTTTTATCATATCATCTCTTGTTCCCCAAATTATCAAGTCCGTGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGATGATGTTTGGTTTTCATTCTAGAGTTACTTCATGATAATGATCTCCAAATTCCATTCAAATTTGCTGAAAATGCATTATTTCGTTCCTTTTGTGGCTGGTAATATTCCATAGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGAGCTGGTTTTCATATTTTTTCAGGTACAGAATTGCTGCTATAAACATTTATTTTCATTACGTAATCTATTTCGTATAATGACTATTCTGGGCCAAAGGTAGGTCTAAAAGATCTGCTTTTAGTTCTTTAAGATCTCCACACCTTTACATTAATGGTTATACTAGTTTACATTCCCATCAATATTCTTAAATTGTTTCCTTTTCACCAATCACCAACATCTATTGTTTTGATTTTTTTATTAGGGGCCGTTCTTTCAGGGTGAGTGGTATCCCACTGTGGTTTTTTGATTTACATTTCCCTGATCATTAGTGATGTTGGGCATTTTAATACAGGCCATTTATATCTTCTTTGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTCTCCATCTCTGTCAGGTTGTCGTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTTCTTGGTCGCGAAGTCTTTTGCCTAATAACCCAATGTCTCTAGAAGGTTTTCAACGTTATCTTCTAGAATTTTTTTATAGGGTTTCATCTTAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTTGTATAAGGTGAGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCAGGTTACCAATTCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTGTTGAGGATCAGTTGGCTGTAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATGCCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAATGTGATGCCTCCAATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGAATGATGGTGGTATTTTTTGATGAGGAATTGCATTAGTTGTAGGTACTTTTGGCAGTATGGTCATTTTCACAATATTGATTTACTCATCCATGAGATAGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTGCAGCTAATGTAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCGCCTTATACTTGAGGCTACTGATTTGTGTACATTAATTTTGTATCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTGGGTTTTCTAGGTATACGATCATATCATCCTTAAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCGCACGGGAAATGCTTTCTTTTCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTATCACAGGTGGTTTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGATGCTGGATTTTTTGTCAAATATTTTTTTTCTGTGTTTGTGAGATGATCATGTGATTCTTGTTTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGATTTTTTGCATCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTTGTTATATGTCCTTTCCTGGTTTTGATATTACAGTGATACTGCTTCATTGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAGCTAGGATTGGTACCAATTTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCACAAACTATTTTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGGTTGTATCTTTCCAGGAATTTATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTGAGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTTGTTTTATCTTTTGTATGTTTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTTTCTGCTGGGTTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATTTATGTAGGTAATGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCACAGAAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTAGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCAGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAATTTTTTTACATTTCTATCCTGATTTCATTGATGCCCAATGATTTTCTAGGAAGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTTGGGGTTGATTTCCAATCTTAATTCCTGTAGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCTGTATATATTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTGCATTTGTTGAATCTTCTCCACATATCCTGTAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCATTGGGTACTGAAGTCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTCCTGGATTCGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTTTACCGGCTGTTGCTTTAAGTTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTAGTGTCCATTTGCATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTAGTGAGTCTAGTAGAGACAGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTTAAGTGGAGCATTTAGGCCATTTACATTCAGTGTTAGTATTGAGATGAGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTTTTTTTAAATCATTGCATTATTGTTTTATAAGATCCTGTGAGAGGTTAAACGCAAAACAGACGCCGAAGACT -2: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.459646, "nevent" : 5787, "sequence_length" : 1694, "events_per_base" : 3.416175 } -2: CTCAGTGCATTAACCAACCTACCTTCAATGCTCCACCATCCAGCCTCGGTAATAATTACGCGCCCCTTCCCTTGAATCACCTTCACTAAAAGCCATGTTGAATCCCACAATGTAGGCCATCAGCTCAGGAAATAGAACATCAGCATGGGAGGTAGTAAGGCAGATGAAAAAATCATGCCTCTCATCAGTGCCAGTAGAATGACTCATTTCTCAATACCTAAAATAAAGAAATCGATGATTTACATGAGATCAGAATGGGCCGTAACAAACAGGTGCTCTGACAGGTGCCCAATCGATAGAGAACAAAGCAGGGAATAATGACTGGTTGACCAGAGCCAATCCTTCCATTCAACCCTACACTATTCCAATGATATTGTCACATATCACTTGTGTGCCATCAATATATTCAACACTTCTCCAATCCATATGGCCAACCAGATCAAAGGTGGCATCACAAGCCAAGGCCGGTGTCAGGAATTTCAGACCAAATATCATGCCTTCATTCAGTAGGTAGCGTATCTGCCGCTGTAAAATCAGACAAAGCCAGATCCGCCATAATGCTTCCTTCCACTCGGCCTCACTTCTCATCATTAAACCTCAGGCATGCCGAAATGGAACATGGAGCCCTAAAATGAATAGCCTCATCAGTGGGTAATCCCACTGTCATCTAATCAAAGGCCCCATACATTCATCAGAATAGAAATGGTGGTGGCATGGAACCCTTCTGAACAACATCTCAAATGCAGTGCTTCAATGAAGTAAACCTGCTCATAGGAGGCAGCTAAGCTAAAATCAGGAAAATTGCATGGTTACAAGCCCGCCGAAATGAATACAAAGCGCAAACCACTACCAGCCCCAGAATAATCAATAAATATACATAGCCAGAATCGAATAAGTCAGTATGACGCCGCGCTTCAATAGTAGCAATCAGATCAGCATTATTTATCCTTCAATCCAATAGGAAATTCCTTCAAATGCTAGACGGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAATGAGCTCAATCTCCATATTAATGCTTCATTGCCATCTCCACTATCATCCTTATTATTCTCAATAAAACCATAAACAAGTGAGGCCCATCCATAAATAAATGCAGCCATCCAGATAGCCTCAAAATAAGGCTGAGTATCATTCATTCACCCCTTGCCAATATTCTCATCCTTCCCTTCTCCATCCCAGCCATGCCATCTTAACATCGCTCAGCATTTTGATAGCGTAAATAGATAGGTCAATTTCAGAGCAGTCAAAATAAATAGGCTGGAAATCAAATGTGAGGCAGATGCCAGTGGAATGGTGGGCGCTCCATTGACACCACTTCCTCCAGCTCAATTTTCTCGATAAAAGAAATCGATCTGAACAATTTTGTTGCCCGTCGCTTATTCCAAATAGTGGCGCTGACTAAACACCGCTCAATGAATCATCATCAACCTTCTACTCGTACCAGATGCCTCATCAGCCAAAATCAAATATCCTTCAATAAGTGGGCAGTATGAATGGTGGGCCAATGGTACTATCAGCCAGAATGTTCTTCGAAAATAGTGACCTAAATGGAAAATTTGGCCTCGTACCAGTAAATAAATTCTGACGAGCATCAGTGAAAAAAACATGTAGACGGATGGGTCGGCTGCCTCCAGCATTTCCATCTCATGAAGCGGGCGCATGAAA - 5/19 Test #2: test_events_call ................. Passed 11.85 sec +5: ATGAAACTATAATTTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTTATTTTCTAACTGTGAAAATATACTTGGACCTGATTAGTTTTGTATATTTGCATATTGGCTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAAATTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATATACTGATGAAGAAGAGATGATGTTTGGTTTTCATTCTGGGGGTTGCTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTTATTTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAAAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCGCCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } +5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG + 6/19 Test #5: test_rawrgrgr_r941_call .......... Passed 17.26 sec test 11 Start 11: test_squiggle_r94 @@ -83904,13 +83944,181 @@ 11: 603 G -0.348534 0.163240 9.530728 11: 604 C 0.161046 0.266937 15.063374 11: 605 T 0.194787 0.502125 16.019983 - 6/19 Test #11: test_squiggle_r94 ................ Passed 0.38 sec + 7/19 Test #11: test_squiggle_r94 ................ Passed 0.19 sec test 12 Start 12: test_squiggle_r10 12: Test command: /build/reproducible-path/scrappie-1.4.2/build_ssse3/scrappie "squiggle" "--model" "squiggle_r10" "/build/reproducible-path/scrappie-1.4.2/reads/test_squiggles.fa" 12: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_ssse3 12: Test timeout computed to be: 10000000 +2: ATTTTTTTAACAATTGGAAATTCAGTTTTTTGTATTTAACGAATTTTTTTATTTTCTAACTGTGAAAATATATTGGACGGTCGTTTTGTATATTTGGCATATTATTTGTAATATTTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTGTATATTAATCATGCGATTATGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTGCTTTATTGTCCTGGCTGAATATTCTTTACTGTTGGATGGAAGGATGTTAATGACATCAAATATCTTGTTAAGATCTCAATTGCAAGATTTTATATTGTATTATTTTTTTAGTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTCTTTACTGGTGATTTGACATTTTGTACCTGTCACCTGAGCAGTATTATCAGTGGTAGTCTTTTATCATATCATCTCTTGTTCCCCAAATTATCAAGTCCGTGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGATGATGTTTGGTTTTCATTCTAGAGTTACTTCATGATAATGATCTCCAAATTCCATTCAAATTTGCTGAAAATGCATTATTTCGTTCCTTTTGTGGCTGGTAATATTCCATAGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGAGCTGGTTTTCATATTTTTTCAGGTACAGAATTGCTGCTATAAACATTTATTTTCATTACGTAATCTATTTCGTATAATGACTATTCTGGGCCAAAGGTAGGTCTAAAAGATCTGCTTTTAGTTCTTTAAGATCTCCACACCTTTACATTAATGGTTATACTAGTTTACATTCCCATCAATATTCTTAAATTGTTTCCTTTTCACCAATCACCAACATCTATTGTTTTGATTTTTTTATTAGGGGCCGTTCTTTCAGGGTGAGTGGTATCCCACTGTGGTTTTTTGATTTACATTTCCCTGATCATTAGTGATGTTGGGCATTTTAATACAGGCCATTTATATCTTCTTTGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTCTCCATCTCTGTCAGGTTGTCGTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTTCTTGGTCGCGAAGTCTTTTGCCTAATAACCCAATGTCTCTAGAAGGTTTTCAACGTTATCTTCTAGAATTTTTTTATAGGGTTTCATCTTAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTTGTATAAGGTGAGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCAGGTTACCAATTCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTGTTGAGGATCAGTTGGCTGTAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATGCCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAATGTGATGCCTCCAATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGAATGATGGTGGTATTTTTTGATGAGGAATTGCATTAGTTGTAGGTACTTTTGGCAGTATGGTCATTTTCACAATATTGATTTACTCATCCATGAGATAGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTGCAGCTAATGTAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCGCCTTATACTTGAGGCTACTGATTTGTGTACATTAATTTTGTATCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTGGGTTTTCTAGGTATACGATCATATCATCCTTAAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCGCACGGGAAATGCTTTCTTTTCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTATCACAGGTGGTTTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGATGCTGGATTTTTTGTCAAATATTTTTTTTCTGTGTTTGTGAGATGATCATGTGATTCTTGTTTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGATTTTTTGCATCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTTGTTATATGTCCTTTCCTGGTTTTGATATTACAGTGATACTGCTTCATTGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAGCTAGGATTGGTACCAATTTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCACAAACTATTTTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGGTTGTATCTTTCCAGGAATTTATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTGAGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTTGTTTTATCTTTTGTATGTTTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTTTCTGCTGGGTTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATTTATGTAGGTAATGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCACAGAAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTAGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCAGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAATTTTTTTACATTTCTATCCTGATTTCATTGATGCCCAATGATTTTCTAGGAAGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTTGGGGTTGATTTCCAATCTTAATTCCTGTAGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCTGTATATATTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTGCATTTGTTGAATCTTCTCCACATATCCTGTAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCATTGGGTACTGAAGTCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTCCTGGATTCGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTTTACCGGCTGTTGCTTTAAGTTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTAGTGTCCATTTGCATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTAGTGAGTCTAGTAGAGACAGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTTAAGTGGAGCATTTAGGCCATTTACATTCAGTGTTAGTATTGAGATGAGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTTTTTTTAAATCATTGCATTATTGTTTTATAAGATCCTGTGAGAGGTTAAACGCAAAACAGACGCCGAAGACT +2: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.459646, "nevent" : 5787, "sequence_length" : 1694, "events_per_base" : 3.416175 } +2: CTCAGTGCATTAACCAACCTACCTTCAATGCTCCACCATCCAGCCTCGGTAATAATTACGCGCCCCTTCCCTTGAATCACCTTCACTAAAAGCCATGTTGAATCCCACAATGTAGGCCATCAGCTCAGGAAATAGAACATCAGCATGGGAGGTAGTAAGGCAGATGAAAAAATCATGCCTCTCATCAGTGCCAGTAGAATGACTCATTTCTCAATACCTAAAATAAAGAAATCGATGATTTACATGAGATCAGAATGGGCCGTAACAAACAGGTGCTCTGACAGGTGCCCAATCGATAGAGAACAAAGCAGGGAATAATGACTGGTTGACCAGAGCCAATCCTTCCATTCAACCCTACACTATTCCAATGATATTGTCACATATCACTTGTGTGCCATCAATATATTCAACACTTCTCCAATCCATATGGCCAACCAGATCAAAGGTGGCATCACAAGCCAAGGCCGGTGTCAGGAATTTCAGACCAAATATCATGCCTTCATTCAGTAGGTAGCGTATCTGCCGCTGTAAAATCAGACAAAGCCAGATCCGCCATAATGCTTCCTTCCACTCGGCCTCACTTCTCATCATTAAACCTCAGGCATGCCGAAATGGAACATGGAGCCCTAAAATGAATAGCCTCATCAGTGGGTAATCCCACTGTCATCTAATCAAAGGCCCCATACATTCATCAGAATAGAAATGGTGGTGGCATGGAACCCTTCTGAACAACATCTCAAATGCAGTGCTTCAATGAAGTAAACCTGCTCATAGGAGGCAGCTAAGCTAAAATCAGGAAAATTGCATGGTTACAAGCCCGCCGAAATGAATACAAAGCGCAAACCACTACCAGCCCCAGAATAATCAATAAATATACATAGCCAGAATCGAATAAGTCAGTATGACGCCGCGCTTCAATAGTAGCAATCAGATCAGCATTATTTATCCTTCAATCCAATAGGAAATTCCTTCAAATGCTAGACGGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAATGAGCTCAATCTCCATATTAATGCTTCATTGCCATCTCCACTATCATCCTTATTATTCTCAATAAAACCATAAACAAGTGAGGCCCATCCATAAATAAATGCAGCCATCCAGATAGCCTCAAAATAAGGCTGAGTATCATTCATTCACCCCTTGCCAATATTCTCATCCTTCCCTTCTCCATCCCAGCCATGCCATCTTAACATCGCTCAGCATTTTGATAGCGTAAATAGATAGGTCAATTTCAGAGCAGTCAAAATAAATAGGCTGGAAATCAAATGTGAGGCAGATGCCAGTGGAATGGTGGGCGCTCCATTGACACCACTTCCTCCAGCTCAATTTTCTCGATAAAAGAAATCGATCTGAACAATTTTGTTGCCCGTCGCTTATTCCAAATAGTGGCGCTGACTAAACACCGCTCAATGAATCATCATCAACCTTCTACTCGTACCAGATGCCTCATCAGCCAAAATCAAATATCCTTCAATAAGTGGGCAGTATGAATGGTGGGCCAATGGTACTATCAGCCAGAATGTTCTTCGAAAATAGTGACCTAAATGGAAAATTTGGCCTCGTACCAGTAAATAAATTCTGACGAGCATCAGTGAAAAAAACATGTAGACGGATGGGTCGGCTGCCTCCAGCATTTCCATCTCATGAAGCGGGCGCATGAAA + 8/19 Test #2: test_events_call ................. Passed 17.49 sec +test 13 + Start 13: test_licence + +13: Test command: /build/reproducible-path/scrappie-1.4.2/build_ssse3/scrappie "license" +13: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_ssse3 +13: Test timeout computed to be: 10000000 +13: This software is subject to the terms of the Mozilla Public +13: License, v. 2.0. If a copy of the MPL was not distributed with this +13: file, You can obtain one at http://mozilla.org/MPL/2.0/. +13: +13: (c) 2017 Oxford Nanopore Technologies Ltd. +13: +13: +13: +13: The vectorised math functions 'src/sse_mathfun.h' are from +13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is +13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. + 9/19 Test #13: test_licence ..................... Passed 0.03 sec +test 14 + Start 14: test_help + +14: Test command: /build/reproducible-path/scrappie-1.4.2/build_ssse3/scrappie "help" +14: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_ssse3 +14: Test timeout computed to be: 10000000 +14: Scrappie is a technology demonstrator for the Oxford Nanopore Technologies +14: Limited Research Algorithms group. +14: +14: Basic usage: +14: * scrappie events Base call from event based data. +14: * scrappie help Print general help or help about specific Scrappie command. +14: * scrappie licence Print licensing information. +14: * scrappie raw Base call directly from raw signal. +14: * scrappie version Print version information. +14: * scrappie squiggle Create approximate squiggle for sequence +14: * scrappie mappy Map signal to approximate squiggle +14: * scrappie seqmappy Map signal to sequence via basecall posteriors +14: * scrappie event_table Output table of events for read +14: +14: This project began life as a proof (bet) that a base caller could be written +14: in a low level language in under 8 hours. Some of the poor and just plain odd +14: design decisions, along with the lack of documentation, are a result of its +14: inception. In keeping with ONT's fish naming policy, the project was originally +14: called Crappie. +14: +14: Scrappie's purpose is to demonstrate the next generation of base calling and, as +14: such, may change drastically between releases and breaks backwards +14: compatibility. Newer versions may drop support of current features or change their +14: behaviour. +10/19 Test #14: test_help ........................ Passed 0.02 sec +test 15 + Start 15: test_help_events + +15: Test command: /build/reproducible-path/scrappie-1.4.2/build_ssse3/scrappie "help" "events" +15: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_ssse3 +15: Test timeout computed to be: 10000000 +15: Usage: events [OPTION...] fast5 [fast5 ...] +15: Scrappie basecaller -- basecall via events +15: +15: -#, --threads=nparallel Number of reads to call in parallel +15: --dump=filename Dump annotated events to HDF5 file +15: --dwell, --no-dwell Perform dwell correction of homopolymer lengths +15: -f, --format=format Format to output reads (FASTA or SAM) +15: --hdf5-chunk=size Chunk size for HDF5 output +15: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, +15: 1: quickest, 9: best) +15: --licence, --license Print licensing information +15: --local=penalty Penalty for local basecalling +15: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +15: -m, --min_prob=probability Minimum bound on probability of match +15: -o, --output=filename Write to file rather than stdout +15: -p, --prefix=string Prefix to append to name of each read +15: --segmentation=chunk:percentile +15: Chunk size and percentile for variance based +15: segmentation +15: --slip, --no-slip Use slipping +15: -s, --skip=penalty Penalty for skipping a base +15: --temperature1=factor Temperature for softmax weights +15: --temperature2=factor Temperature for softmax bias +15: -t, --trim=start:end Number of events to trim, as start:end +15: --uuid, --no-uuid Output UUID +15: -y, --stay=penalty Penalty for staying +15: -?, --help Give this help list +15: --usage Give a short usage message +15: -V, --version Print program version +15: +15: Mandatory or optional arguments to long options are also mandatory or optional +15: for any corresponding short options. +15: +15: Report bugs to . +11/19 Test #15: test_help_events ................. Passed 0.04 sec +test 16 + Start 16: test_help_event_table + +16: Test command: /build/reproducible-path/scrappie-1.4.2/build_ssse3/scrappie "help" "event_table" +16: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_ssse3 +16: Test timeout computed to be: 10000000 +16: Usage: event_table [OPTION...] fast5 [fast5 ...] +16: Scrappie basecaller -- basecall via events +16: +16: --licence, --license Print licensing information +16: -o, --output=filename Write to file rather than stdout +16: --segmentation=chunk:percentile +16: Chunk size and percentile for variance based +16: segmentation +16: -t, --trim=start:end Number of events to trim, as start:end +16: -?, --help Give this help list +16: --usage Give a short usage message +16: -V, --version Print program version +16: +16: Mandatory or optional arguments to long options are also mandatory or optional +16: for any corresponding short options. +16: +16: Report bugs to . +12/19 Test #16: test_help_event_table ............ Passed 0.03 sec +test 17 + Start 17: test_help_raw + +17: Test command: /build/reproducible-path/scrappie-1.4.2/build_ssse3/scrappie "help" "raw" +17: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_ssse3 +17: Test timeout computed to be: 10000000 +17: Usage: raw [OPTION...] fast5 [fast5 ...] +17: Scrappie basecaller -- basecall from raw signal +17: +17: -#, --threads=nparallel Number of reads to call in parallel +17: -f, --format=format Format to output reads (FASTA or SAM) +17: --hdf5-chunk=size Chunk size for HDF5 output +17: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, +17: 1: quickest, 9: best) +17: -H, --homopolymer=homopolymer Homopolymer run calc. to use: choose from +17: "nochange" or "mean" (default). Not implemented +17: for CRF. +17: --licence, --license Print licensing information +17: --local=penalty Penalty for local basecalling +17: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +17: --model=name Raw model to use: "raw_r94", "rgrgr_r94", +17: "rgrgr_r941", "rgrgr_r10", "rnnrf_r94" +17: -m, --min_prob=probability Minimum bound on probability of match +17: -o, --output=filename Write to file rather than stdout +17: -p, --prefix=string Prefix to append to name of each read +17: --segmentation=chunk:percentile +17: Chunk size and percentile for variance based +17: segmentation +17: --slip, --no-slip Use slipping +17: -s, --skip=penalty Penalty for skipping a base +17: --temperature1=factor Temperature for softmax weights +17: --temperature2=factor Temperature for softmax bias +17: -t, --trim=start:end Number of samples to trim, as start:end +17: --uuid, --no-uuid Output UUID +17: -y, --stay=penalty Penalty for staying +17: -?, --help Give this help list +17: --usage Give a short usage message +17: -V, --version Print program version +17: +17: Mandatory or optional arguments to long options are also mandatory or optional +17: for any corresponding short options. +17: +17: Report bugs to . +13/19 Test #17: test_help_raw .................... Passed 0.03 sec +test 18 + Start 18: test_help_squiggle + +18: Test command: /build/reproducible-path/scrappie-1.4.2/build_ssse3/scrappie "help" "squiggle" +18: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_ssse3 +18: Test timeout computed to be: 10000000 12: #one 12: pos base current sd dwell 12: 0 T 0.273674 0.499835 0.755774 @@ -86439,6 +86647,31 @@ 12: 2523 T -0.083219 0.260580 7.076826 12: 2524 A -1.159863 0.143544 8.895534 12: 2525 T -0.833608 0.215293 6.887578 +18: Usage: squiggle [OPTION...] fasta [fasta ...] +18: Scrappie squiggler +18: +18: --licence, --license Print licensing information +18: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +18: -m, --model=name Squiggle model to use: "squiggle_r94", +18: "squiggle_r94_rna", "squiggle_r10" +18: -o, --output=filename Write to file rather than stdout +18: -p, --prefix=string Prefix to append to name of each read +18: --rescale, --no-rescale Rescale network output +18: -?, --help Give this help list +18: --usage Give a short usage message +18: -V, --version Print program version +18: +18: Mandatory or optional arguments to long options are also mandatory or optional +18: for any corresponding short options. +18: +18: Report bugs to . +14/19 Test #18: test_help_squiggle ............... Passed 0.04 sec +test 19 + Start 19: test_version + +19: Test command: /build/reproducible-path/scrappie-1.4.2/build_ssse3/scrappie "version" +19: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_ssse3 +19: Test timeout computed to be: 10000000 12: 2526 T 1.226973 0.187758 8.868385 12: 2527 A 0.326663 0.163646 8.637399 12: 2528 A 0.776825 0.159115 7.422457 @@ -87421,6 +87654,8 @@ 12: 924 G 1.467776 0.122657 8.328823 12: 925 T 1.156435 0.141427 7.031790 12: 926 A 0.296050 0.161997 7.324443 +19: scrappie 1.4.0- +15/19 Test #19: test_version ..................... Passed 0.03 sec 12: 927 C -0.836542 0.154324 7.840771 12: 928 T 0.824620 0.159619 7.303357 12: 929 T 1.516868 0.156615 7.500086 @@ -89050,212 +89285,7 @@ 12: 603 G -0.572062 0.335164 12.230327 12: 604 C 0.561030 0.467363 9.792212 12: 605 T -0.235200 0.581865 6.671800 - 7/19 Test #12: test_squiggle_r10 ................ Passed 0.18 sec -test 13 - Start 13: test_licence - -13: Test command: /build/reproducible-path/scrappie-1.4.2/build_ssse3/scrappie "license" -13: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_ssse3 -13: Test timeout computed to be: 10000000 -13: This software is subject to the terms of the Mozilla Public -13: License, v. 2.0. If a copy of the MPL was not distributed with this -13: file, You can obtain one at http://mozilla.org/MPL/2.0/. -13: -13: (c) 2017 Oxford Nanopore Technologies Ltd. -13: -13: -13: -13: The vectorised math functions 'src/sse_mathfun.h' are from -13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is -13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. - 8/19 Test #13: test_licence ..................... Passed 0.03 sec -test 14 - Start 14: test_help - -14: Test command: /build/reproducible-path/scrappie-1.4.2/build_ssse3/scrappie "help" -14: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_ssse3 -14: Test timeout computed to be: 10000000 -14: Scrappie is a technology demonstrator for the Oxford Nanopore Technologies -14: Limited Research Algorithms group. -14: -14: Basic usage: -14: * scrappie events Base call from event based data. -14: * scrappie help Print general help or help about specific Scrappie command. -14: * scrappie licence Print licensing information. -14: * scrappie raw Base call directly from raw signal. -14: * scrappie version Print version information. -14: * scrappie squiggle Create approximate squiggle for sequence -14: * scrappie mappy Map signal to approximate squiggle -14: * scrappie seqmappy Map signal to sequence via basecall posteriors -14: * scrappie event_table Output table of events for read -14: -14: This project began life as a proof (bet) that a base caller could be written -14: in a low level language in under 8 hours. Some of the poor and just plain odd -14: design decisions, along with the lack of documentation, are a result of its -14: inception. In keeping with ONT's fish naming policy, the project was originally -14: called Crappie. -14: -14: Scrappie's purpose is to demonstrate the next generation of base calling and, as -14: such, may change drastically between releases and breaks backwards -14: compatibility. Newer versions may drop support of current features or change their -14: behaviour. - 9/19 Test #14: test_help ........................ Passed 0.02 sec -test 15 - Start 15: test_help_events - -15: Test command: /build/reproducible-path/scrappie-1.4.2/build_ssse3/scrappie "help" "events" -15: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_ssse3 -15: Test timeout computed to be: 10000000 -15: Usage: events [OPTION...] fast5 [fast5 ...] -15: Scrappie basecaller -- basecall via events -15: -15: -#, --threads=nparallel Number of reads to call in parallel -15: --dump=filename Dump annotated events to HDF5 file -15: --dwell, --no-dwell Perform dwell correction of homopolymer lengths -15: -f, --format=format Format to output reads (FASTA or SAM) -15: --hdf5-chunk=size Chunk size for HDF5 output -15: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, -15: 1: quickest, 9: best) -15: --licence, --license Print licensing information -15: --local=penalty Penalty for local basecalling -15: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -15: -m, --min_prob=probability Minimum bound on probability of match -15: -o, --output=filename Write to file rather than stdout -15: -p, --prefix=string Prefix to append to name of each read -15: --segmentation=chunk:percentile -15: Chunk size and percentile for variance based -15: segmentation -15: --slip, --no-slip Use slipping -15: -s, --skip=penalty Penalty for skipping a base -15: --temperature1=factor Temperature for softmax weights -15: --temperature2=factor Temperature for softmax bias -15: -t, --trim=start:end Number of events to trim, as start:end -15: --uuid, --no-uuid Output UUID -15: -y, --stay=penalty Penalty for staying -15: -?, --help Give this help list -15: --usage Give a short usage message -15: -V, --version Print program version -15: -15: Mandatory or optional arguments to long options are also mandatory or optional -15: for any corresponding short options. -15: -15: Report bugs to . -10/19 Test #15: test_help_events ................. Passed 0.03 sec -test 16 - Start 16: test_help_event_table - -16: Test command: /build/reproducible-path/scrappie-1.4.2/build_ssse3/scrappie "help" "event_table" -16: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_ssse3 -16: Test timeout computed to be: 10000000 -16: Usage: event_table [OPTION...] fast5 [fast5 ...] -16: Scrappie basecaller -- basecall via events -16: -16: --licence, --license Print licensing information -16: -o, --output=filename Write to file rather than stdout -16: --segmentation=chunk:percentile -16: Chunk size and percentile for variance based -16: segmentation -16: -t, --trim=start:end Number of events to trim, as start:end -16: -?, --help Give this help list -16: --usage Give a short usage message -16: -V, --version Print program version -16: -16: Mandatory or optional arguments to long options are also mandatory or optional -16: for any corresponding short options. -16: -16: Report bugs to . -11/19 Test #16: test_help_event_table ............ Passed 0.02 sec -test 17 - Start 17: test_help_raw - -17: Test command: /build/reproducible-path/scrappie-1.4.2/build_ssse3/scrappie "help" "raw" -17: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_ssse3 -17: Test timeout computed to be: 10000000 -17: Usage: raw [OPTION...] fast5 [fast5 ...] -17: Scrappie basecaller -- basecall from raw signal -17: -17: -#, --threads=nparallel Number of reads to call in parallel -17: -f, --format=format Format to output reads (FASTA or SAM) -17: --hdf5-chunk=size Chunk size for HDF5 output -17: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, -17: 1: quickest, 9: best) -17: -H, --homopolymer=homopolymer Homopolymer run calc. to use: choose from -17: "nochange" or "mean" (default). Not implemented -17: for CRF. -17: --licence, --license Print licensing information -17: --local=penalty Penalty for local basecalling -17: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -17: --model=name Raw model to use: "raw_r94", "rgrgr_r94", -17: "rgrgr_r941", "rgrgr_r10", "rnnrf_r94" -17: -m, --min_prob=probability Minimum bound on probability of match -17: -o, --output=filename Write to file rather than stdout -17: -p, --prefix=string Prefix to append to name of each read -17: --segmentation=chunk:percentile -17: Chunk size and percentile for variance based -17: segmentation -17: --slip, --no-slip Use slipping -17: -s, --skip=penalty Penalty for skipping a base -17: --temperature1=factor Temperature for softmax weights -17: --temperature2=factor Temperature for softmax bias -17: -t, --trim=start:end Number of samples to trim, as start:end -17: --uuid, --no-uuid Output UUID -17: -y, --stay=penalty Penalty for staying -17: -?, --help Give this help list -17: --usage Give a short usage message -17: -V, --version Print program version -17: -17: Mandatory or optional arguments to long options are also mandatory or optional -17: for any corresponding short options. -17: -17: Report bugs to . -12/19 Test #17: test_help_raw .................... Passed 0.02 sec -test 18 - Start 18: test_help_squiggle - -18: Test command: /build/reproducible-path/scrappie-1.4.2/build_ssse3/scrappie "help" "squiggle" -18: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_ssse3 -18: Test timeout computed to be: 10000000 -18: Usage: squiggle [OPTION...] fasta [fasta ...] -18: Scrappie squiggler -18: -18: --licence, --license Print licensing information -18: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -18: -m, --model=name Squiggle model to use: "squiggle_r94", -18: "squiggle_r94_rna", "squiggle_r10" -18: -o, --output=filename Write to file rather than stdout -18: -p, --prefix=string Prefix to append to name of each read -18: --rescale, --no-rescale Rescale network output -18: -?, --help Give this help list -18: --usage Give a short usage message -18: -V, --version Print program version -18: -18: Mandatory or optional arguments to long options are also mandatory or optional -18: for any corresponding short options. -18: -18: Report bugs to . -13/19 Test #18: test_help_squiggle ............... Passed 0.02 sec -test 19 - Start 19: test_version - -19: Test command: /build/reproducible-path/scrappie-1.4.2/build_ssse3/scrappie "version" -19: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_ssse3 -19: Test timeout computed to be: 10000000 -19: scrappie 1.4.0- -14/19 Test #19: test_version ..................... Passed 0.02 sec -4: ATGAAACTATAATTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTATTTTCTAACTGTGAAAATATACTTGGACTGATTAGTTTTGTATATTTGCATATTATTTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAATTTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGAGATGATGTTTGGTTTTCATTCCTGGGGGTTACTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGCTGCTATAAACATATTTATTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA -4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } -4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG -15/19 Test #4: test_rawrgrgr_r94_call ........... Passed 12.89 sec -5: ATGAAACTATAATTTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTTATTTTCTAACTGTGAAAATATACTTGGACCTGATTAGTTTTGTATATTTGCATATTGGCTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAAATTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATATACTGATGAAGAAGAGATGATGTTTGGTTTTCATTCTGGGGGTTGCTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTTATTTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAAAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCGCCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA -5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } -5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG -16/19 Test #5: test_rawrgrgr_r941_call .......... Passed 13.21 sec -6: scrappie: No basecall returned for /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 -6: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.914597, "nblock" : 16158, "sequence_length" : 31, "blocks_per_base" : 521.225806, "nsample" : 81106, "trim" : [ 200, 80990 ] } -6: TCTGGTTTTTTATTATGTTTTATCTTCCATA -6: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.972209, "nblock" : 5778, "sequence_length" : 3087, "blocks_per_base" : 1.871720, "nsample" : 29150, "trim" : [ 200, 29090 ] } -6: GCTTCAGCATCTGCTGGGTCTTGTCTGCACATCGACAATGATTTCTGCCACTTTCAGCTTTTCACCGAATGTTTTTAGCCTTTTTCAGCCATAACCGCGATACTTTTTCCGTCAACGATAGTGGACACTTCCATAAAATCAACAGCTGCGGGGAAATCGTTGGTTTGAATCATGTTTCAGCAGATAAGCGAGGAATTTATCGGGAACAGAGGTCGCAGATAGCGACAACGTCTCTATTCCTTTGACTTCGCTGATGGACCAATACCAGTCGACCGATACAACCAGAACCGTTGATACCAACTTTGCTCATGGTTTTTTCTGAAACGTTGGATGAAATTGATCCCTTTCGCTTGAACCGGGATGGCGGGAATGACAATCTCCATTCGCATAAAACGTAACGTCTGGAAACGGGTAAACAATATTTTAATTGAAATTCAGAAAAAGCCCGTTTTAACAGAAAATTATGTTGCAAGCCAGAAATATTCTGGAAAATAAATATCAAGGTTACAAAATCAGCGTCACTGGCTGGTCTTTTTACTGGTTATCGCAGCGTATTACGCGCAATGAATTGCGTGGTTTTGCCGCGTGCGCACGATCCAGCCACTGCATGAGCATCATTCTCGCGCTTTCCTCTGGCATCTCGATTTTTGTGCTGATGGTCATCGCCTCTTTTATGAGGCTGGATACCCGACCGCCAGTACCTCAACAGAACCGATGATGAGCGGGACTGGCGCGTTTGCGGAACGTGCGTGGTCGCCACCTCTATTGTTGCCGCTGCCGGTGACTGGTTTTGGTAACGGGCAACCCGTGGTTGCTGCTGGTTTGACGATGCCTTACGCTCAAGAGGCCGATTTTCGAACGGGTAAAGTCACTAAATACGTGGCATGGAAACGCTGGCGAATCTGGGATGTTCCTGTCATCAGGTTAGCGCTGCGCTGCGCCTGGCACGCCACTATTCTGGAAAGGCGAAAGGCCGCTTTTGCGCATGATGCGGCGTTTAAGCCATCCTGAAGGATATTTAAAGAAACGCCCTGTGGAATTCAAAGCCATAATTATAAAGGAGATACAGATCTGTCACGGAAACGCCTGTGCTGTACTGTGTGATGGATGAAACCGTAATCCTTGCCCGTTACGTCATCTGGCTTCTTGATCCGCATTACACCCGATCTTTAATACATCATAATATCAAAATAAACCAGCGTCTTAAGTAATTTTCAGGATCAAACATAAATCGATAAACCATGGAGGTTGCTACATGAAAAAACTGGCTTTATTCTGTTTACTCGGAAACGTTGTTTCCTTTTATCCCGATACCGGGCGAAACCCCGCTCTGGGTTCGAAAGGGGGATCTGGCGCTGTTGCGGCAGGCGGCAAATTCTTTTGTGGTGATATCATACGCTCATGCAGCCAAAAAAGACAACATCAACTAACTAAAATGTGAAAAGGGTGCCATAAAAAATGGATACTGGCGGTCAAATAGCGGGAGAAAATCCCCGCGCTGTACTGGACATGCAGGCCATGAGCGCAGCAACCTCCTTGTCACCAGCCCCGGAGCCGGCATCGTAGAGCGTTTGTCGGGTCAGGAATGTAAATGTCAGAATCGTGATGCGGATAATGACAGACACGCACCAGCAGTTCCACGCTCGTAGCTTTCTGTCCTTGCCGGATGGCGGGTAAGGCCTTCAATCCTGAACTGCTGGTTCCGTTCGTTGGCTTCGATTAATGCGAAAATGTCGGGGCCTTCAGTTTCTGATCACCGGTTAGCCTGGAAACGGAAAGTGCGATATCCCGCAGGGCGTTTTGTAAGGTTTTATTCAGGGGACAAGAAATGATCATTTCACGAAATTGCGTGCTGTCTTCCAGAATTTTTCCATCGTTCGGGTTAGCCAGTTTTAGCCATCGTACTCTCTTCATTTCCAATAGCATTAATTTTCTATGCAATAATGTTGCTGAAGCATGATAACAAAAGATTTTGGTCAGTGATAATTACCGTCAATGCCAAATCGTTATCAGGAGTGAACCTGGACGGCGAAAAACAACCAATAATGAATGGCACTCCTCGCAGCGATTGGTTGCCGCGCATCGCGTCGGGTTGGTTCGTTATTGCCTGCGTCTTCGGCGGTATTTTTGACTATTCGCGTAAGTCGGCCTGGCTGGCTATTTCCTCTGGCAGGCCGATCACGATCAGCGTGGTCTGCCAGAAATTAAAATTCGAACCGGGTTAAAAACATGCAATTGTTGCCATCAGCCCGGATGCGGCGTGATCAGCCCGGGGCTGCAAGTCGTGTTACGGAAATGGAAGCGATGAACCAAATATCGCGCAACCAGATCGAAATTAAACAGTGGCAGCAGGTTATCGTGCTGCGGAATGGGCCGGTGAAAACACCTGCTGGTGAAGCCCTCCGACGCTGAATTAAATCAACGCTTTCAGGCTTATATCGCGGGTATTGATCCTGTATTGAAATATGCCAAAACTGGCGTATGAAGGCGATATCAATCATGAAAGCTGACAGACCCGACCGCTGGATAATGCTTATACCCGATATTTTGAAGCAGATTCGTCAGTCTGGCGGCTACGAAACGACGGCTGGCGGAACTGTAACCATCAGCGCACCCGCCTGGGTCGAATGCCGTGATTGGCGCGTTTGTCTTTGCCCTGGTCCTGCCTGACACTGATAACCGTTGTAGTGCTGCATCCAGATCATCATTTCGTCACTAAGTATTGCCGCGCAACAGATGAAGATTCGCCAGGTGGCAGTGAATGATGAACCAGCAGGTCGTAATGAAATCATCTTTAAGTCATCAGTCAGCGAATGCGCATTCACTGGGGATGACGGTCAGGAGCTGTTCGACGGGCGCGGAAGAGATTTATCATGGCACCAGCGAACCTGCGCTGGCGATGCGGACCTGTTATCTCGCGCTGGAGAACAACACGGCTATCGAAGCGACTGCCGCGCATCAAAACAACCACTCGTAACGGAAAACGGAATGCGGATAGCGCGCGTCGTGCCAGCAAAGCTGGCGCAAAGGCTTCTATAAGCCCAGCGATGGCGGGCAGACAGTTTCCGGTGTAGTAAAAGCGAAGCA -17/19 Test #6: test_rawrgrgr_r10_call ........... Passed 15.57 sec +16/19 Test #12: test_squiggle_r10 ................ Passed 0.30 sec 10: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 to /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa -- score 11581.230469 over 12818 blocks (0.903513 per block) 10: block pos 10: 0 -1 @@ -102076,24 +102106,30 @@ 10: 12815 -1 10: 12816 -1 10: 12817 -1 -18/19 Test #10: test_seqmappy .................... Passed 4.78 sec +17/19 Test #10: test_seqmappy .................... Passed 5.69 sec +6: scrappie: No basecall returned for /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 +6: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.914597, "nblock" : 16158, "sequence_length" : 31, "blocks_per_base" : 521.225806, "nsample" : 81106, "trim" : [ 200, 80990 ] } +6: TCTGGTTTTTTATTATGTTTTATCTTCCATA +6: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.972209, "nblock" : 5778, "sequence_length" : 3087, "blocks_per_base" : 1.871720, "nsample" : 29150, "trim" : [ 200, 29090 ] } +6: GCTTCAGCATCTGCTGGGTCTTGTCTGCACATCGACAATGATTTCTGCCACTTTCAGCTTTTCACCGAATGTTTTTAGCCTTTTTCAGCCATAACCGCGATACTTTTTCCGTCAACGATAGTGGACACTTCCATAAAATCAACAGCTGCGGGGAAATCGTTGGTTTGAATCATGTTTCAGCAGATAAGCGAGGAATTTATCGGGAACAGAGGTCGCAGATAGCGACAACGTCTCTATTCCTTTGACTTCGCTGATGGACCAATACCAGTCGACCGATACAACCAGAACCGTTGATACCAACTTTGCTCATGGTTTTTTCTGAAACGTTGGATGAAATTGATCCCTTTCGCTTGAACCGGGATGGCGGGAATGACAATCTCCATTCGCATAAAACGTAACGTCTGGAAACGGGTAAACAATATTTTAATTGAAATTCAGAAAAAGCCCGTTTTAACAGAAAATTATGTTGCAAGCCAGAAATATTCTGGAAAATAAATATCAAGGTTACAAAATCAGCGTCACTGGCTGGTCTTTTTACTGGTTATCGCAGCGTATTACGCGCAATGAATTGCGTGGTTTTGCCGCGTGCGCACGATCCAGCCACTGCATGAGCATCATTCTCGCGCTTTCCTCTGGCATCTCGATTTTTGTGCTGATGGTCATCGCCTCTTTTATGAGGCTGGATACCCGACCGCCAGTACCTCAACAGAACCGATGATGAGCGGGACTGGCGCGTTTGCGGAACGTGCGTGGTCGCCACCTCTATTGTTGCCGCTGCCGGTGACTGGTTTTGGTAACGGGCAACCCGTGGTTGCTGCTGGTTTGACGATGCCTTACGCTCAAGAGGCCGATTTTCGAACGGGTAAAGTCACTAAATACGTGGCATGGAAACGCTGGCGAATCTGGGATGTTCCTGTCATCAGGTTAGCGCTGCGCTGCGCCTGGCACGCCACTATTCTGGAAAGGCGAAAGGCCGCTTTTGCGCATGATGCGGCGTTTAAGCCATCCTGAAGGATATTTAAAGAAACGCCCTGTGGAATTCAAAGCCATAATTATAAAGGAGATACAGATCTGTCACGGAAACGCCTGTGCTGTACTGTGTGATGGATGAAACCGTAATCCTTGCCCGTTACGTCATCTGGCTTCTTGATCCGCATTACACCCGATCTTTAATACATCATAATATCAAAATAAACCAGCGTCTTAAGTAATTTTCAGGATCAAACATAAATCGATAAACCATGGAGGTTGCTACATGAAAAAACTGGCTTTATTCTGTTTACTCGGAAACGTTGTTTCCTTTTATCCCGATACCGGGCGAAACCCCGCTCTGGGTTCGAAAGGGGGATCTGGCGCTGTTGCGGCAGGCGGCAAATTCTTTTGTGGTGATATCATACGCTCATGCAGCCAAAAAAGACAACATCAACTAACTAAAATGTGAAAAGGGTGCCATAAAAAATGGATACTGGCGGTCAAATAGCGGGAGAAAATCCCCGCGCTGTACTGGACATGCAGGCCATGAGCGCAGCAACCTCCTTGTCACCAGCCCCGGAGCCGGCATCGTAGAGCGTTTGTCGGGTCAGGAATGTAAATGTCAGAATCGTGATGCGGATAATGACAGACACGCACCAGCAGTTCCACGCTCGTAGCTTTCTGTCCTTGCCGGATGGCGGGTAAGGCCTTCAATCCTGAACTGCTGGTTCCGTTCGTTGGCTTCGATTAATGCGAAAATGTCGGGGCCTTCAGTTTCTGATCACCGGTTAGCCTGGAAACGGAAAGTGCGATATCCCGCAGGGCGTTTTGTAAGGTTTTATTCAGGGGACAAGAAATGATCATTTCACGAAATTGCGTGCTGTCTTCCAGAATTTTTCCATCGTTCGGGTTAGCCAGTTTTAGCCATCGTACTCTCTTCATTTCCAATAGCATTAATTTTCTATGCAATAATGTTGCTGAAGCATGATAACAAAAGATTTTGGTCAGTGATAATTACCGTCAATGCCAAATCGTTATCAGGAGTGAACCTGGACGGCGAAAAACAACCAATAATGAATGGCACTCCTCGCAGCGATTGGTTGCCGCGCATCGCGTCGGGTTGGTTCGTTATTGCCTGCGTCTTCGGCGGTATTTTTGACTATTCGCGTAAGTCGGCCTGGCTGGCTATTTCCTCTGGCAGGCCGATCACGATCAGCGTGGTCTGCCAGAAATTAAAATTCGAACCGGGTTAAAAACATGCAATTGTTGCCATCAGCCCGGATGCGGCGTGATCAGCCCGGGGCTGCAAGTCGTGTTACGGAAATGGAAGCGATGAACCAAATATCGCGCAACCAGATCGAAATTAAACAGTGGCAGCAGGTTATCGTGCTGCGGAATGGGCCGGTGAAAACACCTGCTGGTGAAGCCCTCCGACGCTGAATTAAATCAACGCTTTCAGGCTTATATCGCGGGTATTGATCCTGTATTGAAATATGCCAAAACTGGCGTATGAAGGCGATATCAATCATGAAAGCTGACAGACCCGACCGCTGGATAATGCTTATACCCGATATTTTGAAGCAGATTCGTCAGTCTGGCGGCTACGAAACGACGGCTGGCGGAACTGTAACCATCAGCGCACCCGCCTGGGTCGAATGCCGTGATTGGCGCGTTTGTCTTTGCCCTGGTCCTGCCTGACACTGATAACCGTTGTAGTGCTGCATCCAGATCATCATTTCGTCACTAAGTATTGCCGCGCAACAGATGAAGATTCGCCAGGTGGCAGTGAATGATGAACCAGCAGGTCGTAATGAAATCATCTTTAAGTCATCAGTCAGCGAATGCGCATTCACTGGGGATGACGGTCAGGAGCTGTTCGACGGGCGCGGAAGAGATTTATCATGGCACCAGCGAACCTGCGCTGGCGATGCGGACCTGTTATCTCGCGCTGGAGAACAACACGGCTATCGAAGCGACTGCCGCGCATCAAAACAACCACTCGTAACGGAAAACGGAATGCGGATAGCGCGCGTCGTGCCAGCAAAGCTGGCGCAAAGGCTTCTATAAGCCCAGCGATGGCGGGCAGACAGTTTCCGGTGTAGTAAAAGCGAAGCA +18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 17.99 sec 7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.020645, "nblock" : 80790, "sequence_length" : 9342, "blocks_per_base" : 8.648041, "nsample" : 81106, "trim" : [ 200, 80990 ] } 7: CAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTAACCTGTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGGCTGAGGCAGGAGAATCCTTAAGCCAGGGCAGAGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAGAAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAAGAAATGTAGGCTATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTGGTGAGTATCTAATGAAAGCGTTCATTTAAGAATGTACAAGAAGCTATTTGTAGTAACTAGACCAGAGAAGACCTTGACAATATTTACTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGAAATAAATGCTATGCAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTAACAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTATTTCGCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGAAATCACTGCTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAGCCATATAATTACATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAAGTGTGTTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTTCACTTTTCATACAACTTTCTCACAAAGTTGATAAGTGTTTATTTTCTATTTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGGAAGTATCATTTCAGCTTTCCATCCATTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAGAAACGTTGTTGAAAACTTGAGGTAAGAATAAAATATTAAATATTTCTTTCTTTTAGTGTGTGTAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGTCTGCTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTACAATGCAATCATCAATAAGCTTAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCTAGCCATTGCTGCTTTAAGTTTTTCATTCTATTGTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCACTTGGCAGCTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTGAGTGCTTTCTCCATCTGCAAAGTTGGCTCATGGTGCTCTGCAATTACATAGTGCGTAGTAAGCACTCAATGTAGCTGCTGTATTGATGAGTATTGCCATACTCACGCTCATATCTAAACCAGAGATGGCAGTCTTTCTTTAAGGGCCGGATAACGAACATTTTGTGCTTGTGGACCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAGAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAGCAACAGTATGTGCAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGGGGATGCGTTTAGGATAGCATACTGAACTAGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTGTACTCACTCTTCCTGTTGCTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTTATACTCTACAAGGTCTTTCCTGATCCTCTGAGCTGTATCAGATGCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAATTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTAGATTTCAATTTATTAAGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTAAAAACACATATGCCTGGGCCTATATGCTGGACTTCAGAGATCTGAGTGTACAAGGTCTTGGTCAGGCATTTGCATTTAGAACCCCCTGAATGAAGTGCCCCAAAATATATGTTGAATAAAGCAATAAAACCCAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTATCACACTGTAGTTTCTGCATTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGACTCAGACGAGGCACTTAGAATATGCTTTGGCTTTAAAAGTCATGGATGGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAGAAAGAAAAAGCCTCCTTATTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTATTATTTGTACCAGAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTAAATAGAGGGCCTAGTTTTTGTTTTGTTTTGTTTTTAAATGGGGTCTTGCTCTGTGTGCCCAGGTTGGAGTGCAGTGTTATGGTCACTTAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTGTAGATGTGCACCACTTAGGCTAATGTCTAATTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGACTGATCTTGTGAACTCCAGGTCAAATAGTCCACACTCCCACCCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCCTTATGCCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTGACTTAGTAAACGTTTAATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAATATGCTTGATTTCTTTTCTTTTTTTAATAGTGACAGAGGTCTCTTGCTATACCTGTTGCCCAGGCTGGTCTAGAACTCCTGACCCAAAGCGGGATTACAGACATGATGATCCACCATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCCTCCAGGCCTGGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGGTTAGCCTTAGAGAGGGCTGTCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCCGTGGCTTCTCCATCCAGAGACAAATAAGAGAGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGATTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTAGTATGTTTTCTTCTTTACTTACAGTGTTTTGGTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTAAATAACCTGTGAAGCATTTAATGACTTTGTTCCTTGTTTAAACAAGTAAAAACCACAGCTAGTAATCTTAAAGATCGGAGCTGTATATATGTAAATATTCCGTTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGAAGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCCAATACAGCTTCATGAATTATTAGCATTGCGAGACAGACCTAAATGAATCAGGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAGAAAACTATACTGGAAGCACTTCATTTAATTTCTTAGGAGTGGATAGGAGATAAGTAAGACTTTAGAGTAACAAATATGCCTGTGGACACTCTGAAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAAGAACTGGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGTAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTAAGCATGGGAACCACCCCAAGATTCATTTGCCACCTCCCACCTGGTCTCTCCCTTACCCGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACCACACACCATTCCACTTGGCCTCTCCCAAATCTCATGTCGGTTTACTCACATTCCCAAAGTCAACTGTGGCTTCCCAATGGTCCCCAAAGTCTTGCTCATTCCAGCTTAATTAGCCCAGAAGTCCAAGTCCAAAGTACTCATCTGAGATAAGGCCAAAGTCCCTTCCATCTATGAGCCTATAAAATCAAAGAAGTAAGTTAGATTACTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCAAACAAAGGGGCTGTAGGCCCCAGAAAGTCTGCAATCAATAAGGCAGTCATTAAGCTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACATCCAGCCCACTGATGCAGAGTGGGCTCCCACAGCCTCATGCAGCTCGACCTCTGTGGCTCCATGCCTCACATCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTAACCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCACCATTCTGGGGGTCTGGAGGATGGTGGCCCTCTTCTCATGGCTCCCACTAGGCGGTGCCCCGAGTGGGGACTGTAGGGGTCCAACTGCCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCGCAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTTGCTGCAATGCTGTTACATGTAAGCCGCCAAGGCTTGGGGCTTGCACTCTCCTGGAAGCCCTGGGCTATACGCTGGCCCCTTACAGCCATGAGTGGGGATGCCAGGACGCAAGTTCCCGAGACTGCCAAAGCAGCAAGGCCCTGGCCACAAAACCATTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACCTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAATGGGTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTAAATGCTGGTTCAGTTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGCAGAGGCAAGAATGTACCCTTCTCTTTGCTAGAGCATAAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAATTTGCAAGCTTTCCACTTCTTCTGTCTTCTGAGCCTCCATCCTGTTCCAACACTGCCTATTACTCCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAAGACATTTATTTCTCACAGTTGGCTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCTGGCAAGGGCTTTCTTGCTGCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAAACAGAATTGGCAGAATCCTTTTATAATAAAGCCATTCTCAATAACCCACTCCCTTGGTAACAATATTGAATTATTCATTCATGAGGACAGAGCCCTTATATGGCTTAATCATCTTTTAATGCAACCTACTCTTCCAATACTGCCACACTACAGGATTAAGTTTCCAACACATGAACTTTGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAATTGGTAAGAAATAATGTGGTACTTTCTCCCACAACTTAATCAATGGATTGTAGGTGTAAAGTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCGAGTAAGCTCAGTGTTTTCATAGTAAAATCAGTTGGTGATTTGTTAGCATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCACATTTCCATCTTCTGGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACGTAGTCCTCACTTAACATCTCAGTAGATTCTTGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATGTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTGTTCACTGTGAATGTCATGGCCCAATAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATATTATCACCAGATGGGAAACAGGGTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAATATATTCACCGTATTCATAAAGGAATAAAAGATTTAGTTTAGACAAAACAATGCTATTCAATATATTCAGTTAATGTGGTATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAGAATTACTGTGGTGCTTAAAGGCTTTGACTCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGGAAGAGGTATAGAGAGGACAGGATAATAAGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGATGTCTACTCATTTCCCCTGTTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCATACTCATCACTATTTCCTGTTGCTGCTCTAGAGACTCTGCATCTGGTATCCAGGAGTTGGTATTGTCTTCATCTTGCCTTTTCAGTGTAAATCACCCTGTTTTTCCTCCTTATGCCCAGTAATAGGTGATCGTACATCCCTTCACAACAATTAGGACTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAGCTGAACTGGAAAGAGAATTGCTTTTGACATTTCTGCAAACATGTGATTCTTTTTAAATGTATTTCATTTGCAAGAGGAAATCTGGCAAAAGCATTTCTCATTTTTATGTAAGTGTTTATCTGATAAAGGGGAAGTTTAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCGGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCACCAGCAAATTGACCAGCAATACGTGATA 7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.012573, "nblock" : 64090, "sequence_length" : 4696, "blocks_per_base" : 13.647785, "nsample" : 64395, "trim" : [ 200, 64290 ] } 7: GGTATTGCTTCGTTCAGTTACGTGTTGCTCTTGCCTACATCGCTCTATCTTCAGCGTCTGCTTGGTGACATACCCATGAAACTATAATTTTTTAACAATTGGAAATTCTTCAGTTTTTATGTACAACAATTTTATTTTCTAACTGTGAAAATATATGGACATCTGATTAGTTTTGTATATATTTGGCATATTGTTTAGCAATATTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCGTATGTAATCATGCGGTGTGAATAATGACGGTTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTTGCTTTATTGTCCCTGCTTGGCTAGATATTCTTACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTAATTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTTCTTTACTGGTGATTTTGACATTTTGTTGTCTCATCACCTGAGCAGTATTGCACTGTATCCAGTGTTGGCAGTCTTTTATCCCTTATCCTCCTCTGTTCCCCCAGAACCCTCAAGTCCGTTAACATCATTTATGCCTTTGCATCTCATAATTATACTGATGAAGAGATGATGTTTGGACCATTCCTGGAGGTTACTTCACTTAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTCTTTATTCACTCTTTGATTGATGGGCATTTGGGCTGGTTTCATATTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTACCTAGCATATACGATACGTATCTATTTCGTATAATGACTTCTTCTGGGCCAAAGGAGTAGGTCTAAGATCTACTTTTAGTTCTTTAAGGAATCTCCACACCATTTCACATTGTGGTTATACTAGTTTACATTCCCATCAAACATTCTTAAATTGTTTCCTTTTCACCAGTCACACCAACATCTATTAGTTTTGATTTTATTAGGGGCCATTCTTTCAGGAGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATAGTACAGGCCATTTGTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAGGTTTTCTCCATCATGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCTAAGCTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCGAAGTCTTTGCCTAACCCAATGTCTAGAGGTTTTTCAACGTTATCTTCTAGAATTTTTATAGGGTTCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTCAGGGATCAGTTTCATTCTTCGACATGCTTGGGTTTACCGAATTATTCAGTGTCATTTGTTGATAGGATATCCTTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCAGTTAACATAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGGTATAGTTTGAAGTCAAGTAATGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGGGAATTGCATTGGAATTTGTGGGTGCTTTTGGCAGTATGGTCATTTTCACAATATTGATTTTACTCATCCATGAGAATGGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAATATATATATATATATATTTGCAGCTATTAATAAAGGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGTATACTTAGGGCTACTGATTTGTGTACATTAATTTGTAATCCTGAAACTTTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTAGGGTTTCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCCTGGCTAGGACTTCAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCCTTGTCTTTGTTCGATCGCACGGGAAGTAACAACTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTGTCACAGGTGGTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGGACTTTAATCATAAAGGGATGCTGGATTTTTGTCAAATATTTTTCTGTGTTTATTGGGATGATCATGTGGTTCTTGTTTTTAATTCTGTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGAGTTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTGTTATGTGTCCTTTCCTGGTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAGATTCAGCTGTGAATCCGTCTGGTCCTGGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTAGGCTTATTTGGATCTTCTCTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAATAACCAGCTTTTTGTTTTATCTTGTATGTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTCTTTTTCTGCTGGGTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGTGTGACCTTAGATTGTCTATTTGTGCTTTTCAGACTTTAGATGTAGGTATTTAATGTTATCAGTTTCTATGTAGGTATAATGCTATGGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCGGTTTTGATAGGTTGTGTCACTACTATTGTTCAGTTGAAAGAATTTTTACATTTCTATCCTGATTTCATTGTTCACCCAATGATTTTTCAGGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTGAAGATTTCTTTTTGGGGGTTGATTTCCAATCTTATTCCCTATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTATATGTTCTATATTGGAGAATGTTCCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTAGGTGAATGTTCTCCACATATCACTGTAAATCCGTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTAGGGCTCCAGTATTAGGCACTTACATGTTTAGGATTGTGATATTTTCCTAGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTGTGTCCATTTATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTGGAGGCTGAGTCTAGTGAGACGGTAGATACTTGGTTAGTGGTATCCATTCTGCCATTCTGTATCTTTTAAATTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTAAATCATTGCATTATTGTTTATAAGATCCTGTGAGAGGTTAAACGCAAGCAGACGCCGAAGATG 7: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.041418, "nblock" : 28890, "sequence_length" : 2268, "blocks_per_base" : 12.738095, "nsample" : 29150, "trim" : [ 200, 29090 ] } 7: CGGTGCGCATTCAGCCAGCCCTACCTCATTCACCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTACGCCCTTCCGCCGAATCGCCTTCACAAAGCCTTGTTAGTCCCACATGGCCAGTGGCCGGATTGTCGGCTCCGTTTCGGAATGGACGTGGATCTAGTGTGATTGTTGGGAGCGGATGGAAAATCAGCGTGCCTCTCCACCAATCGATCATCGGGTGGTGCGGTGGATGATCGTTACTCGCCAATACAGATGAGAATCCGTTGATTTTGCAGCTCGATTGGGATCGGATGGTGCATTAATAGACCGGGTATCTGAACGGTGATGAATGGGAGAGACAGTGGAACCGGCATTAGGCGGGATAATGGGCGGTTGGAAGAAATGGAATGATACGGCTCATTCAATTTCACTTCATTCACCGTCATGATGAATGGTGTCGCATATCGCTTTGATGGCATCAGTATAATTCCGCCTTCTACCGATATCGAATCCAATAATTAGTAGGTGACTCAGCTGGATCAGGATTTGACGTCGCGGGTGGATGGGATGGGGTTTCGGATATTTGGAATGTCATTAGCCACCTCGGCTGCAGTGTCGTTTCGGTGATGGTGGTGGGGGGTGTGAAATCACCTTCGTCTCGTTGCGCCGGGAGAGGCGTTCAGATGGGGGTGGAAACGGGATCTGGGTATCGGACGAAAGGAGTGGATCAGCATGCATCGATTAGGCTGCATTTCCGCTCGACATGAAACGGATGACTAGCGTAGATCATTGGTGATGGGTGTGGGAGGGTGACATCAGATGGACTTGTAGTCTGGGATTTGGGTCCTAAAGTGGGATGACATACTCTGCATATCGTCGGTGGATCCGCTTGTGCGTGTCTGCTGTCAGAGATTTCGTGCGTTCAATGCGGTAATGGATGGATAAATGGTGGATGGTGGTTCGTTGGCGTGGAGCGGGACCTTTCACTGGGATGATACCTCCGGTGCGGTTGAACCTCGGTGGGTGCGATTCTGCGGTGGATTCTCTCGTCGTGCGGGTAATAATGATTTCGACTGGAATCGGAGGTGTGGAGTGGGTTTTGGTGCCGGATGGGTGGAATTCTCTCGTTGGCGTAGATGAGTGCGCTCTGCCGGTTTGGATGGTCATTGGAAATGTGCATGATGGGGATCAGGATGGATGGTCGGTGTGGGCCCTGTGCTTCATGAGTCGGTGGAAGACGATCGGATCAATTGTTGTCATTTCAGTCAAATGGAATAATTTGAGAATTTAAATTCCCAATTGAATTAGCCTGGATGGACAGGTAGAAAGCCTATGAAAAGCCCATGAAGTGGATGACTGGATCAGTCCTACCAGAATCGTATTAGTATTTCATTATGTCCTTCCACTAATAGATATTATTGATTATCTCCGATAAAATATATGAATGGGTGTGGATTTGTCATAAATCATTGTATCCGTTATTATAAGGAAATCGTTTGGTTGAGGGTGTCGTTGGCTCACTTGTACTTAGTATTCGTATATTAGTCATTTCCCTTTATCATCCCCAGTGTATACAATCTTAGCATCATCGTAATTTCGTTCATTCACCCACATTTTTGATGGCGTAAATCTCATAGAATAGATGGGTTGGGATTTCAGATGTCTGCATGGCCCGGTCAGTATGATGAACGGAGTATCAGATCATGAATCGGATGGTGGATGGGTCGGCCGATTAGATGGTTGTATTATCTCCCAAGAATGGACGTGGAGTGACAAATGGTAAGATGCAAGATGGATTGATACCAGCTTCATCAATCTAATTTTTATAGAATAAGAAAGTCGATCTGGGTGCCGACCGTGAACAGATTTGGAACGCTTGTCAGCCTTACTTATTCTCCAGATAGTGTATAGGTGAATGGTACAGGATAGAATATATGTGCCAGCTCAATCAGATCGTAAATCGTTATTCTTCAAATATAGTCTTAGTCATATTTACTCATCTGACCGAAATCAGATATCTTCAATATAGCGGCAAGTGGATAATGACAGTGTAGATGGTGGATGATAATGGAATGTTACTATCAATGGCGAATGAACCTTTCGAGAAATGGTAGAGCTAGTAGGTGGGAGAATTTGGCCTCCGTACCAGATAAATTTCAAATAAATTCATCATGGGCGGCTGGTGAACGCATCAGTGGAAAAACATATGGATGGATGGGATCGTATCGATGGTGAGCTATCAGCGAATCAGTGGCATTTCCAATCTCATGGGCGGGTGAAGGT -19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 57.94 sec +19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 74.57 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 63.41 sec +Total Test time (real) = 87.49 sec make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' - rm -fr -- /tmp/dh-xdg-rundir-YEooGZUn - cd build_sse3 && make -j6 test ARGS\+=--verbose ARGS\+=-j6 + rm -fr -- /tmp/dh-xdg-rundir-DCFB1aTV + cd build_sse3 && make -j5 test ARGS\+=--verbose ARGS\+=-j5 make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_sse3' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j6 +/usr/bin/ctest --force-new-ctest-process --verbose -j5 UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/build_sse3/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/build_sse3/DartConfiguration.tcl Test project /build/reproducible-path/scrappie-1.4.2/build_sse3 @@ -102133,12 +102169,6 @@ 5: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "raw" "--model" "rgrgr_r941" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" 5: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 5: Test timeout computed to be: 10000000 -test 6 - Start 6: test_rawrgrgr_r10_call - -6: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "raw" "--model" "rgrgr_r10" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" -6: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 -6: Test timeout computed to be: 10000000 1: 1: 1: CUnit - A unit testing framework for C - Version 2.1-3 @@ -102285,15 +102315,13 @@ 1: passed 1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed -3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.325922, "nblock" : 16158, "sequence_length" : 9258, "blocks_per_base" : 1.745301, "nsample" : 81106, "trim" : [ 200, 80990 ] } 1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed 1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 1: passed -4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.295786, "nblock" : 16158, "sequence_length" : 9512, "blocks_per_base" : 1.698696, "nsample" : 81106, "trim" : [ 200, 80990 ] } 1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 1: passed -5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.278788, "nblock" : 16158, "sequence_length" : 9559, "blocks_per_base" : 1.690344, "nsample" : 81106, "trim" : [ 200, 80990 ] } +3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.325922, "nblock" : 16158, "sequence_length" : 9258, "blocks_per_base" : 1.745301, "nsample" : 81106, "trim" : [ 200, 80990 ] } 1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 1: passed 1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 @@ -102520,23 +102548,39 @@ 1: tests 71 71 71 0 0 1: asserts 506 506 506 0 n/a 1: -1: Elapsed time = 3.826 seconds - 1/19 Test #1: unittest ......................... Passed 5.92 sec +1: Elapsed time = 5.094 seconds + 1/19 Test #1: unittest ......................... Passed 5.63 sec +test 6 + Start 6: test_rawrgrgr_r10_call + +6: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "raw" "--model" "rgrgr_r10" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" +6: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 +6: Test timeout computed to be: 10000000 +2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.273149, "nevent" : 16119, "sequence_length" : 9414, "events_per_base" : 1.712237 } +5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.278788, "nblock" : 16158, "sequence_length" : 9559, "blocks_per_base" : 1.690344, "nsample" : 81106, "trim" : [ 200, 80990 ] } +4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.295786, "nblock" : 16158, "sequence_length" : 9512, "blocks_per_base" : 1.698696, "nsample" : 81106, "trim" : [ 200, 80990 ] } +3: GCAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTATGTCTTAACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCAACTACTCTCCGGGAGACTGAGGCAGGAGAATCCTTAAACCCGGGGCAGGGTTGAAGTGAGCCGAGGTCTCACCTCATTGCACTCCAGCCTATGGGTGACAGGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAAATCAGTTTCCCGTAATTATTTTAGAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTAGTAGGTATCTAATAGAAAGCGTTCATTTAAGGAATAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATGTATTCTGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTTTATTTCCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAAGAAGGTAATATAAAAATGGAGTATGAACAAAATTGAAATCCTTTGCTATGAAGTTGAAAATACTAGTTTGTACATGTAAGCCTGTACGATAATAAAAATATAAATATATAATTTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTAGTTGAATATTTCACTTTTCACGTACAACTTTCTCACAAAGTTGATAGTGTTTATTTCTATTTTTGTATGTGCAGCCTCATATTATTTGTCTTTTCTCGTTAGAGTATCATTTCAACTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAACACAAACGTTGTTGAAACTTGAGGTAGAATAAAATATTAAATATTTCTTTGCCTTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCTGGAAATGCAAAATTAGAACATGCCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTTTCCTCATCTTCCCTCATTTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTAGCAAGTTTTTCATTCATTGTTTTTTTTCCATGTATTTCTGTAAGCCTCTTGTTGCAATCTTCACCTTGGCGTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGGTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTTTTCTGCAGTACATAGTGCGTAATGGCCTCAATGGTAGCTACTGTATTGATGGAAGTATTGCCATACTCCCTTCATATCTAAACCAGAGATGGTGATCTTTCTTAAGGGCCGGATAACGAACATTTTTGTGCTTATGGACCACGTAGTTTCTGTCTCACCTGGCCCGGCTCTACTGTATTGTAGAAGCAGCCATGGGCGTCTCTATGTGAATGGGCGTGACTGTGTTTTCAAAAGCAACAGTATGTGCAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTGGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCGCTCTTCCTGTTGCTTTGGCAATGCTTATTTATTTTTGCCAGGTTTTCTTCCTTATACTCTACAAAGGTCTTTCTGATCCTCTGAGCTGTATCAGATGCCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTATGTTTCCCTGACTTTGGGTGTGAGTTCTTGAAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTATTAGGTTGTAGATTTCGAGCTTTTGATCTCAAAGATCAGCTGTGCATTTAAAAAACACATATGCCTGGGCCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCTAGATAAGAAGTGCCCCCAAAATATATATTGAATAAAAAGCAATAAAACAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTATTTACTAACTTCTGATACAGACTCAGACAGGCACTTAGAATAACTGCCTTTAAAAGTCATGGATGTTCAAATGCCGTAATGGAACACTATTCACCAACAGAGATGTTGTGGACTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAAAGTGAGTTAGCAAATGCTGTTAGAAACTGTCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACAGTTCCATTAGTATTTGTGCCAAGTGCCACAAGTTATCTTCCTCAAGAATGAATCTGCTTTTGTGATCTTATTTGAGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTAAGGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGCTTCTAGTTTTTTTGTTTGTTTGTTGTTTTTAAATGGGGTCTTGCTCTGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGGTCTCACTGTGTTTCCCAGGCTGATCTTGTGAACTCCGGTCCGTAGTCACGCCCACCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCTTATGCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTCTTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCTATACTGTTGCCCAGGCGGTCCTAGACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATCCTATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGACCATAGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTGTAGCCTTAGAGAGGGCTGTCCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTGAGGGCCACTGAGGGTCATGGTGGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGAGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTCTTCTTTACTTACAGTGTTTTTGGTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACGGCGTGAGGGCTGCTTTTGGAACAAATTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTGAAACATTTAATGACTTTGTTCTTGTTTAAATAAGTAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATTGTAAATATTTCATTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATATTCCTTATCAAGGAAGCTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATATGATAAGTGATTGTCACCAGATGCAAAATATTGACTGTGTGTCAATACAGCTTCATGAAATTATTAACATTGCCTTGAGACAGACCTAAATGAATCAAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCCAGATAGAGATTATATAGAAGTAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTAGAAACACTTCATTTTAATTTCTTAGGGAGTGGATAGGAAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAAGACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTTTGCAACATGGGAACCACCCCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGAACGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAATCTCATGTCGGTTCCCTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTCCAGCAATTAGCCCAAAGTCCAAGTCCAAAGTCTCATCTGAGATAAAGGCCAAGATCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAAGGGCTGTAGGCCCCAAAGTCTGCAATCCAACTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCGCATCCAGCCCACTGATGCAAGTGGGCTCCCCACAACCTCATGCGAAAAGCTCTCGACCTCTGGCTCCATGCCTCATCCAGCCCACTGATGCAAGAGTGGGCTCCAGCAATCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTACCTCTCTGCTGTTTTCACAGGCTGGCGTTGGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCTGCCATTCTGGGGTCTGGAGGATGGTGGCCCTCTTCTCATAGCTCCCACTAGGCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCATAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCAGGCATTTCTATACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTGCTGTGCACCACATGTAAGCCGCCAAGGCTTAGAACTTACACTCTCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCAAGCAGCAAGGCCCTGGCCCACAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATAGGCTGCCACGTGAAGACCTTGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAAATGGGTTTTTTCTTTCTACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGGAATCAGCCAGGTCACCTGTTGAGATGCTTTGCTGTAGAAATTTCTTCCACAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAACAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCAACCATCTAACAAGTCTCTAGGAAATTTGCAAACTTTCCACTTCTTCCTGTCTTCTAGGCCCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCGAACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGTGGAGGTTAGGAAGTCAAGGTTGAGGTCCCTACATCTAGCAAGGGCTTTCTTGCTGCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAAACAAGTGTAGAGATCCTTTTATAATAAAACCATTCTCAATAACCCCTCCTTAGTAACAATGAATTATTCATTCATGGGGATAGAGCCCTTATGTGAAGCAATCATCTTTTAATGCAGCTTCTCTTCCAATACTGCCACTACAGGATTAAGTTTCCAACATGAACTTTGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCGCCGTTACAAATTAGTGAAATAATGTAGTACTTTCTCCCACAACTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTATATTTGTTAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTCTCTGTAATTATAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACAGTAGTCCTCATAACATCTCAGTAGATTCTTGGAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTATTCTGTAGATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATTATCACCAGATGAGGAGAAACAGGGTTTTGCTTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCATATTCACCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGGTGCATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTGTAAAGTATTGACAGTAATATTATAATAAAATGTCATCACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTGCCCAAGGCTTTGACTCTAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGGTATAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCCGCGCCTCATCCTATTTTCCTGTTGCTTGCTCTAGAACTCACCATCTGGTATCCAGAGTTAGGTATTGTCTTCATATTGCCTTTTCAGTGTAGAATCACCCTGTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCGGCCATCCCTTCACAACAATTAGGACTTTCACCGTTTTTAGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAGTGCTGACATTTCTGCAAACATGTGATTTTTTAAATGTATTTCATTGCAAGAATCTGGCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGAAGTTTAAAATATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTAACCAGCAATACGTAGT +3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.319873, "nblock" : 12818, "sequence_length" : 4612, "blocks_per_base" : 2.779271, "nsample" : 64395, "trim" : [ 200, 64290 ] } +3: CTTCCGTTCGAGTTACGTGTTATCTTTGCCTGCAATCCATCTATCTTCGGCGTCTGCTTGGGTGACATACCCATGGAAACTATAATTTTTTTAACAATTGGAAATTCTTCAGTTTTTATATTTAACAGTTTTTGATTTTCTAACTGTGAAAATATATGGACCTGATTAGTTTTGTATATTTGCGCAATATTGGCTAACAATATTTTTCTGAATTTACTTACTAATTCTCCAGCATAGATTCTTATGGGACTGTCATATATTAATCATGCGATTATGAATATGTGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTGCTTTATTGTCCTGGCTGGAATATTTCGCACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTTAGTATTTCAACAGGTTTTTGGGAACTGGTGATGTTTGATTACATGGAATCACGGTTCTTTACTGGTGATTTGACATTTTGTTACCATCACCTGAACTTGGTATTATCCAGTGATTGTAGTCTTTTATCCATATCCTCCTCACCCGTTTCCCCAGTCCTCAAGTCCGTTAGCATCATTTGCCACCTTTTGCATCCTCATACTGATGAAGATGATGTTTGTTTCATTCCTGAGTTACTTCGCGAATGTGATCTCCATTCCATTCAAATTGCTGAAAATGCATTATTTCGTTCCTTTTTGTGGCTGGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTGATGGGCATTTGACTGGTTTTCATATTTTTTCCAATTGCAAATTGGTGCTGCTATAAACGCCATTTTGGCACTGTACATTACGTATCTATTTCGTATAATGGCTTCTTCTGGGCCAAGGTAGGTCTAAGATCTGCTTTTAGTTCTTTAAAGATCTCCTTTACGGCTAATGGTTATACTGGATTTACATTCCATCAACATTGTTAGGTGTTTTCCTTTTCACCAGTCACAACATCTGTGTTTTGATTTTTTTATTAGGGGCCATTCTTTCAGGGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTTTAATAGGTTTGAGGCCATTTATATCTTCTTTGAAATTGTCTATTCATGTCCTTAACTTTTTGATAGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAATTTTCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTAGTTGGGTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCAGAAGTCTTTTACTAACCCAATGTCGAGGTTTTTTTCAACGTTATCTTCTAGAATTTTTTTACCGGGTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTGGATCCAGTTTCATTCTTCGACATGGCAGGTTTGAGTGATGTCATTTGTTGGTCGGGTCCTTTCCCCACTTCATATTTTGTTTGTTTGTTGAGATCTTGAGATTGGCTGTACGTGTTTAGCTTTATCTCTTGGTTCTCTATTCTCTTCATTGGTCTTATGCCTGTTTTTTATACCAGTACCATGCTGTTTTTGCTGATGGTGGCCATTATAGTTTGAAGTCAAATGTAATTACCTCAATTTGTTCTTTACTTAATCTTTACTTTGGCTGGGGCCTCTTTTTGGTTCCATACCGATTTTAGGATTGTTTTTCTCATTCTGTAGAATATTAGGTAGTATTTTTGATGAGTGCATTAGATTTGTAGGTACTTTTGGCGTATATGGTCATTTCTATGTGATTTACTCATCATGAGAATGGATGTATTTCCATTTGTTGTGTATGATTTCTTTTTTTCAGCAGTGTTTTGTTGTTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAGTATAGTCAAATATATATATATATATATATATTTACGCTAATATAAAGTTGGGGATTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGGCTATAGCGGGCTACTGATTTGTGTACATTAATTTTGTATCTAGGCTTTGCTGGAATTCATTTTAACAGTTCAGGAACTTTTAGTTTGGAGTCTTTTGGGTTTCTAGGTATACGATCATATCATCAGCAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTACTCTGGCTGGGACTTTATGTTGAAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCCGCACGGGAAATGCTTTCTTTTTCCATTAAATGTCTAATGTTGTTGGCTGTAGGTTTTGTATCACAGGTGGTTTTTATTACCTTAAACGCCTTCTACGTAGATTTTACTGGGGACTTTAATCATAAAAGGATTACTGGATTTTTTTTGTCAAATATTTTTTTCTGTGTTTGTAGAGATGATCATGTGATTCTTATTTTTAATTCTGTTTTTATATTTATATCATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCCTAGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTAATACGTGGATTTGGATTCAGTTAGCTAAGTATTTTTATTGAGATTTTTGCATCGTTAATCAGTGATGGGTCTCAGTTTTATTTTTTTGTTATAATGTCCTTTCCTGGTTTTGATATTACAGTGATGCAGCTTCATTGGATGATTTAGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGGATTGGTACCAATTTTTCTTTGAATACCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAAACTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGTTGTATCTTTCAAGAATTTATCTCCTCTGAGTTTTTCGTTTATATTACGCCCACAGAGTGTCATAGTAGCCTCCGTGATCTTTTGTATTTCTGTATGCTGAATTTGTAATATCTCCCATTTCATTTTAAGTAAACTTATTTGGATCTTCTCTTTTTTTTTTTTCTTGGTTAATCTTACTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTGTTTATCTTTTTTTTTTTTTGTATATTTTTGTTTCAATTCCGGCTTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTCTGCTGGGTTTAGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGTGTGACCTTAGATTGTCTATTTATTACTTTTTCAGGGCTTTAGATGTAGGTTAATATTCTCGATTTCTATTATGTAGGTATAATGCTATAGAGATTCCTATTCTGGTGTATTTCGAGATTTGTTTTCAGATTTGGGGAGCTCCTTTGCTTGGTTTTGTAGTACTCAGTATTTGTCTGAAAAATACTATCTTCCTTCATTTATAAACTTAGTTTCCTGGATACAAATTCTTGGCTATTTGTTTAGTTTAAAGACTACCGGTAGGACCCCAATCCACTTGTCTTTGCTGTATCCCAGTTTTGATAGGTTGTGTCCTACTATTGTTCAGTTGAGATTTTTTATTTCTATCTGGTTCATTGTTCACCCAATGATTTTTTCAGGATTGTTAATTTGATGTATTTGCAATGTCTTTGAAATTTCTTTTAGAGGTTGGTTCAATCTTAATTCCTATAGTCTGACATAGTACTTGTCATTTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTAGCCTATATATATTTCTATATTAGAGGAATGTTCCATGTGCTGATGAATAAGTCTTATGTTTATTTGTTATTGCGTCTTCTCCCTTATCCCTGTAAATCCGTTGTTGTAAGGAGTGTAGTTTAAAGTACATTGTTTTTCTTTGTTAACTTTTCTATCTTGATGATCTGTATCTAGTGCTGTCATTAGATGCTAAGTCCCTATTGCTGTGTTACCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTGGGGCGCTCAGTATTAGGCACCCATGTTTAGGATTGTGATATTTTTCGTTCGTCCTTTTATCATTATAATGTCTCTCTTTGTATTTTTTACCGGCTGTTGCTTCGTTTGTTTTGTCTGATACAGAATAGTTATTCCTGCTTGCTTTTTAGTGTCCATTGCATGGGATATCTTTCTACCTTTACCGTATATGAGTCCTTAGTATTGGTGAGTCTAGTAGAGACAGTAGATACTTAGTTAGGTAATTCTCCATTCTGCCATTCTGTATCTTTTTAGGTGGAGCGTAGGCCATTTATTCAGTGTTAGTATTGAGATGGTACTATTCTATTCATCGCGATATTTGGTGCCTAGATACCTTGGTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGAGGATTAAACGCAAAAACGGAACGCCGAA +3: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.590575, "nblock" : 5778, "sequence_length" : 2399, "blocks_per_base" : 2.408504, "nsample" : 29150, "trim" : [ 200, 29090 ] } +3: TCGGTGCGCATTCAAGCCAACCCTACCTCCTTCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTCGCGCCCCTTCCGCTTGAATCGCCTTCACTAAGTATGTTGGTCCCACATGATAATTCGTAGATTGCATCGACTCCGTTTCCGAATGAACGTGGATCGGCATTTCAGTAGTAGGCTGGGGCGGATGGAAAAATCAGCGTGCCCTCTCCACAATCGATCATCCGTTTGTCGGCCGGTACGGTAGGACCAGTCGAACTACTCAACCATTACCTAGATGAGGAATCCGTTGATTTTGCATCGTTGGGATCAGTTGGTAAATTCAATAGAATAGTTGTCCTAGACAGGTTGATGGATGGGAGAACAAAGCGGGGCCATGGGCGGGATAATGGGCGGTTGGAAATGGGATACAGCTCCATTCAGCCCTACACTTCCATTCCTCGTATGCTACGATGAATCAGGCCATGCATATCGCTTTTATTGGCCATCAGTATAATTCCAGCCTACCGATATCGATCCATCCTAATTAAGTAGGTGGCTCTCAATGGATCAAGAGATTTAAACATCACAGGTAGGATGATCGTCAGGACTCAGACCTTCAGGAATAATCATGCGCCACCTCCTTTCACATGTCATTCAGTGTGGTATGGTAGGGTAAAATCACCTTCATTCGTACTTGCCTTCAGGCGATTTCAGATAGGTTTGAAACGAATCTGTTGGTATCGGACGAAAATTGGATCAACATACATCAGTAAACTGCATTCCGCTCGACATAGCTCTGGACTTTAGCATAGATACATTAGGCTGGCATGAATTGTGGGAGGAGCCCTCGGAATGGACTTGTCTGGGAGAATTTGAGATCCTAAAAGTGAGATGGCACTACTCTACTCCTCGTCGATGGATCCGCTTGTACAATACAATCCAATTTCTAGATGAATGAAATAGTAGGTGGTTGTGGGCCAGCATGGAGCAGGACCCTTCACTACAGCCACCTCCGATGCGGGGTTCATTGAGGTGCATTCTGCGTGCCTCTGTCGTGCAGGTACCTTAATAAGCCGGGAGGCATTTCAAAGCTGAATCAGGAGGTAAAAATGAGTAGGATTTTAAGCCGCCGAATGGGAAGAACATCCTCTCGTTACCGGCGCAGAATGCACTTCCTGCCGGCCAGGCCAGTCAAAATGTACGCCAGCCAGGAATCAGGAATAAAGACTCAGTCAGTGAACGGCGAGCCCGCGCTGTGCTTCCGCCACAGTGGTAGAAAAACGTCCAGGATCAAATTACGTATTTCAATTCCGTGGAACAATTTGAAAGGCTAAAGCCTAGTAAAATTCAACTGGACGGACAGAGCCCGGAAAAAGCCTCCCTACCCCACTTCAAAGCGGAATGAACGCGGGCTCAAACCCTACAAAATCGCGTATTAAGTAACATTTCGCCCGTACTACACTATCAATCAGCCATTACCTCCGTAAAATACCAAATAGGTGAGAAAATTTGCATCCGCCATCGTACAGCCATCAAATTAGCCCACTCAAAATGGAATTTTGGATGAAAAAGGTATCATTCGACTCACCCCCTTACTTAATATTACGCTGCTCGCGTAAATATTTCCCTTTATACCATCCCAATGCATGCCCAATGCTTAGCATCATGTATTTCGACTCAACACCCACCATGCGCGATGGCGTAAATATAGAAACCAGATACGAGATTTCAGGCATGCCACGCCAGCGGTCAGTATAAACCGGGCAAAATCAAATAGCCGCCAGGCTCCGGACGGTGAGGCGAGATACCGGGTAGATGGGCTGGCGCGCTACATACTCCCAGAAATAGGGCATGGAAGCGCTCCATCGGCGCGATACCAAGATGGGCCGGCACCACTTCACGCCAGCATCTAAATTTTGCCTCGATAAAAGAAATCGTCCCCGACGGTACCGACCCATGAACAGGCATTTTGTTGCCCCGTCGCGCTTGCCACCCATTCCAAAATAGGTGGCGCCAGTACGAAGCGGGCTGAGCTAAACGCGCGCACCGCTCAATGAATCGCATCATCAGCCTTCATCCTCGTACCAGATACCATGGCCTCCTCCACAGCCCGAAAATAGCAAATATCCCTTCAATATGCGCTGATGGGCTGGAAACAGTATGAATAGGCGGGCGGGCCAATGGAATGGCTATCAACAGCCAGCGAATGAACCGCTTCCAATAGGTAGAGCTAAATGCGCGGAGAAATTTGGCCTCCCGTACCGGCCAAACCTAATCAAAATTCTCCTTCGACGGGCAGCTACAGGCGAACAGCGCCAGTGAAAAACATGCGGAGCGGATGGGGTCCGTATCGCTTCGACGAAACTGCCTCCAGCAGGAAAATCAGCTGTCTCATGAAGCGGTGCGCATGAAA + 2/19 Test #3: test_raw_call .................... Passed 11.42 sec test 7 Start 7: test_rawrnnrf_r94_call 7: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "raw" "--model" "rnnrf_r94" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" 7: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 7: Test timeout computed to be: 10000000 -2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.273149, "nevent" : 16119, "sequence_length" : 9414, "events_per_base" : 1.712237 } -3: GCAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTATGTCTTAACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCAACTACTCTCCGGGAGACTGAGGCAGGAGAATCCTTAAACCCGGGGCAGGGTTGAAGTGAGCCGAGGTCTCACCTCATTGCACTCCAGCCTATGGGTGACAGGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAAATCAGTTTCCCGTAATTATTTTAGAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTAGTAGGTATCTAATAGAAAGCGTTCATTTAAGGAATAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATGTATTCTGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTTTATTTCCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAAGAAGGTAATATAAAAATGGAGTATGAACAAAATTGAAATCCTTTGCTATGAAGTTGAAAATACTAGTTTGTACATGTAAGCCTGTACGATAATAAAAATATAAATATATAATTTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTAGTTGAATATTTCACTTTTCACGTACAACTTTCTCACAAAGTTGATAGTGTTTATTTCTATTTTTGTATGTGCAGCCTCATATTATTTGTCTTTTCTCGTTAGAGTATCATTTCAACTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAACACAAACGTTGTTGAAACTTGAGGTAGAATAAAATATTAAATATTTCTTTGCCTTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCTGGAAATGCAAAATTAGAACATGCCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTTTCCTCATCTTCCCTCATTTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTAGCAAGTTTTTCATTCATTGTTTTTTTTCCATGTATTTCTGTAAGCCTCTTGTTGCAATCTTCACCTTGGCGTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGGTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTTTTCTGCAGTACATAGTGCGTAATGGCCTCAATGGTAGCTACTGTATTGATGGAAGTATTGCCATACTCCCTTCATATCTAAACCAGAGATGGTGATCTTTCTTAAGGGCCGGATAACGAACATTTTTGTGCTTATGGACCACGTAGTTTCTGTCTCACCTGGCCCGGCTCTACTGTATTGTAGAAGCAGCCATGGGCGTCTCTATGTGAATGGGCGTGACTGTGTTTTCAAAAGCAACAGTATGTGCAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTGGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCGCTCTTCCTGTTGCTTTGGCAATGCTTATTTATTTTTGCCAGGTTTTCTTCCTTATACTCTACAAAGGTCTTTCTGATCCTCTGAGCTGTATCAGATGCCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTATGTTTCCCTGACTTTGGGTGTGAGTTCTTGAAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTATTAGGTTGTAGATTTCGAGCTTTTGATCTCAAAGATCAGCTGTGCATTTAAAAAACACATATGCCTGGGCCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCTAGATAAGAAGTGCCCCCAAAATATATATTGAATAAAAAGCAATAAAACAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTATTTACTAACTTCTGATACAGACTCAGACAGGCACTTAGAATAACTGCCTTTAAAAGTCATGGATGTTCAAATGCCGTAATGGAACACTATTCACCAACAGAGATGTTGTGGACTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAAAGTGAGTTAGCAAATGCTGTTAGAAACTGTCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACAGTTCCATTAGTATTTGTGCCAAGTGCCACAAGTTATCTTCCTCAAGAATGAATCTGCTTTTGTGATCTTATTTGAGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTAAGGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGCTTCTAGTTTTTTTGTTTGTTTGTTGTTTTTAAATGGGGTCTTGCTCTGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGGTCTCACTGTGTTTCCCAGGCTGATCTTGTGAACTCCGGTCCGTAGTCACGCCCACCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCTTATGCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTCTTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCTATACTGTTGCCCAGGCGGTCCTAGACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATCCTATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGACCATAGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTGTAGCCTTAGAGAGGGCTGTCCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTGAGGGCCACTGAGGGTCATGGTGGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGAGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTCTTCTTTACTTACAGTGTTTTTGGTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACGGCGTGAGGGCTGCTTTTGGAACAAATTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTGAAACATTTAATGACTTTGTTCTTGTTTAAATAAGTAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATTGTAAATATTTCATTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATATTCCTTATCAAGGAAGCTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATATGATAAGTGATTGTCACCAGATGCAAAATATTGACTGTGTGTCAATACAGCTTCATGAAATTATTAACATTGCCTTGAGACAGACCTAAATGAATCAAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCCAGATAGAGATTATATAGAAGTAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTAGAAACACTTCATTTTAATTTCTTAGGGAGTGGATAGGAAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAAGACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTTTGCAACATGGGAACCACCCCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGAACGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAATCTCATGTCGGTTCCCTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTCCAGCAATTAGCCCAAAGTCCAAGTCCAAAGTCTCATCTGAGATAAAGGCCAAGATCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAAGGGCTGTAGGCCCCAAAGTCTGCAATCCAACTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCGCATCCAGCCCACTGATGCAAGTGGGCTCCCCACAACCTCATGCGAAAAGCTCTCGACCTCTGGCTCCATGCCTCATCCAGCCCACTGATGCAAGAGTGGGCTCCAGCAATCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTACCTCTCTGCTGTTTTCACAGGCTGGCGTTGGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCTGCCATTCTGGGGTCTGGAGGATGGTGGCCCTCTTCTCATAGCTCCCACTAGGCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCATAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCAGGCATTTCTATACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTGCTGTGCACCACATGTAAGCCGCCAAGGCTTAGAACTTACACTCTCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCAAGCAGCAAGGCCCTGGCCCACAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATAGGCTGCCACGTGAAGACCTTGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAAATGGGTTTTTTCTTTCTACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGGAATCAGCCAGGTCACCTGTTGAGATGCTTTGCTGTAGAAATTTCTTCCACAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAACAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCAACCATCTAACAAGTCTCTAGGAAATTTGCAAACTTTCCACTTCTTCCTGTCTTCTAGGCCCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCGAACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGTGGAGGTTAGGAAGTCAAGGTTGAGGTCCCTACATCTAGCAAGGGCTTTCTTGCTGCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAAACAAGTGTAGAGATCCTTTTATAATAAAACCATTCTCAATAACCCCTCCTTAGTAACAATGAATTATTCATTCATGGGGATAGAGCCCTTATGTGAAGCAATCATCTTTTAATGCAGCTTCTCTTCCAATACTGCCACTACAGGATTAAGTTTCCAACATGAACTTTGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCGCCGTTACAAATTAGTGAAATAATGTAGTACTTTCTCCCACAACTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTATATTTGTTAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTCTCTGTAATTATAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACAGTAGTCCTCATAACATCTCAGTAGATTCTTGGAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTATTCTGTAGATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATTATCACCAGATGAGGAGAAACAGGGTTTTGCTTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCATATTCACCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGGTGCATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTGTAAAGTATTGACAGTAATATTATAATAAAATGTCATCACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTGCCCAAGGCTTTGACTCTAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGGTATAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCCGCGCCTCATCCTATTTTCCTGTTGCTTGCTCTAGAACTCACCATCTGGTATCCAGAGTTAGGTATTGTCTTCATATTGCCTTTTCAGTGTAGAATCACCCTGTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCGGCCATCCCTTCACAACAATTAGGACTTTCACCGTTTTTAGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAGTGCTGACATTTCTGCAAACATGTGATTTTTTAAATGTATTTCATTGCAAGAATCTGGCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGAAGTTTAAAATATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTAACCAGCAATACGTAGT -3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.319873, "nblock" : 12818, "sequence_length" : 4612, "blocks_per_base" : 2.779271, "nsample" : 64395, "trim" : [ 200, 64290 ] } +5: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAAGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCCATGGTTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGCTTAATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTATTTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCACATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCCAAAATATATATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCAGCTTGTTTAAACAAATGAAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTTTGCAAGCATGGGGAACCACCCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGAGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGACCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTGTTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGAGGCCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC +5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } +2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTTTCTTCTTTACTTACAGTGTTTTGGTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGGGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA +2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175321, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } 4: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCATGGTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGTATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTCACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCAAAATATATATTGAATAAAACAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTAATGTGTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCGCTTGTTTAAACAAATGAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTGCAAGCATGGGGAACCACCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGGGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGTTCCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC 4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.179309, "nblock" : 12818, "sequence_length" : 4723, "blocks_per_base" : 2.713953, "nsample" : 64395, "trim" : [ 200, 64290 ] } -3: CTTCCGTTCGAGTTACGTGTTATCTTTGCCTGCAATCCATCTATCTTCGGCGTCTGCTTGGGTGACATACCCATGGAAACTATAATTTTTTTAACAATTGGAAATTCTTCAGTTTTTATATTTAACAGTTTTTGATTTTCTAACTGTGAAAATATATGGACCTGATTAGTTTTGTATATTTGCGCAATATTGGCTAACAATATTTTTCTGAATTTACTTACTAATTCTCCAGCATAGATTCTTATGGGACTGTCATATATTAATCATGCGATTATGAATATGTGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTGCTTTATTGTCCTGGCTGGAATATTTCGCACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTTAGTATTTCAACAGGTTTTTGGGAACTGGTGATGTTTGATTACATGGAATCACGGTTCTTTACTGGTGATTTGACATTTTGTTACCATCACCTGAACTTGGTATTATCCAGTGATTGTAGTCTTTTATCCATATCCTCCTCACCCGTTTCCCCAGTCCTCAAGTCCGTTAGCATCATTTGCCACCTTTTGCATCCTCATACTGATGAAGATGATGTTTGTTTCATTCCTGAGTTACTTCGCGAATGTGATCTCCATTCCATTCAAATTGCTGAAAATGCATTATTTCGTTCCTTTTTGTGGCTGGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTGATGGGCATTTGACTGGTTTTCATATTTTTTCCAATTGCAAATTGGTGCTGCTATAAACGCCATTTTGGCACTGTACATTACGTATCTATTTCGTATAATGGCTTCTTCTGGGCCAAGGTAGGTCTAAGATCTGCTTTTAGTTCTTTAAAGATCTCCTTTACGGCTAATGGTTATACTGGATTTACATTCCATCAACATTGTTAGGTGTTTTCCTTTTCACCAGTCACAACATCTGTGTTTTGATTTTTTTATTAGGGGCCATTCTTTCAGGGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTTTAATAGGTTTGAGGCCATTTATATCTTCTTTGAAATTGTCTATTCATGTCCTTAACTTTTTGATAGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAATTTTCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTAGTTGGGTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCAGAAGTCTTTTACTAACCCAATGTCGAGGTTTTTTTCAACGTTATCTTCTAGAATTTTTTTACCGGGTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTGGATCCAGTTTCATTCTTCGACATGGCAGGTTTGAGTGATGTCATTTGTTGGTCGGGTCCTTTCCCCACTTCATATTTTGTTTGTTTGTTGAGATCTTGAGATTGGCTGTACGTGTTTAGCTTTATCTCTTGGTTCTCTATTCTCTTCATTGGTCTTATGCCTGTTTTTTATACCAGTACCATGCTGTTTTTGCTGATGGTGGCCATTATAGTTTGAAGTCAAATGTAATTACCTCAATTTGTTCTTTACTTAATCTTTACTTTGGCTGGGGCCTCTTTTTGGTTCCATACCGATTTTAGGATTGTTTTTCTCATTCTGTAGAATATTAGGTAGTATTTTTGATGAGTGCATTAGATTTGTAGGTACTTTTGGCGTATATGGTCATTTCTATGTGATTTACTCATCATGAGAATGGATGTATTTCCATTTGTTGTGTATGATTTCTTTTTTTCAGCAGTGTTTTGTTGTTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAGTATAGTCAAATATATATATATATATATATATTTACGCTAATATAAAGTTGGGGATTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGGCTATAGCGGGCTACTGATTTGTGTACATTAATTTTGTATCTAGGCTTTGCTGGAATTCATTTTAACAGTTCAGGAACTTTTAGTTTGGAGTCTTTTGGGTTTCTAGGTATACGATCATATCATCAGCAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTACTCTGGCTGGGACTTTATGTTGAAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCCGCACGGGAAATGCTTTCTTTTTCCATTAAATGTCTAATGTTGTTGGCTGTAGGTTTTGTATCACAGGTGGTTTTTATTACCTTAAACGCCTTCTACGTAGATTTTACTGGGGACTTTAATCATAAAAGGATTACTGGATTTTTTTTGTCAAATATTTTTTTCTGTGTTTGTAGAGATGATCATGTGATTCTTATTTTTAATTCTGTTTTTATATTTATATCATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCCTAGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTAATACGTGGATTTGGATTCAGTTAGCTAAGTATTTTTATTGAGATTTTTGCATCGTTAATCAGTGATGGGTCTCAGTTTTATTTTTTTGTTATAATGTCCTTTCCTGGTTTTGATATTACAGTGATGCAGCTTCATTGGATGATTTAGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGGATTGGTACCAATTTTTCTTTGAATACCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAAACTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGTTGTATCTTTCAAGAATTTATCTCCTCTGAGTTTTTCGTTTATATTACGCCCACAGAGTGTCATAGTAGCCTCCGTGATCTTTTGTATTTCTGTATGCTGAATTTGTAATATCTCCCATTTCATTTTAAGTAAACTTATTTGGATCTTCTCTTTTTTTTTTTTCTTGGTTAATCTTACTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTGTTTATCTTTTTTTTTTTTTGTATATTTTTGTTTCAATTCCGGCTTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTCTGCTGGGTTTAGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGTGTGACCTTAGATTGTCTATTTATTACTTTTTCAGGGCTTTAGATGTAGGTTAATATTCTCGATTTCTATTATGTAGGTATAATGCTATAGAGATTCCTATTCTGGTGTATTTCGAGATTTGTTTTCAGATTTGGGGAGCTCCTTTGCTTGGTTTTGTAGTACTCAGTATTTGTCTGAAAAATACTATCTTCCTTCATTTATAAACTTAGTTTCCTGGATACAAATTCTTGGCTATTTGTTTAGTTTAAAGACTACCGGTAGGACCCCAATCCACTTGTCTTTGCTGTATCCCAGTTTTGATAGGTTGTGTCCTACTATTGTTCAGTTGAGATTTTTTATTTCTATCTGGTTCATTGTTCACCCAATGATTTTTTCAGGATTGTTAATTTGATGTATTTGCAATGTCTTTGAAATTTCTTTTAGAGGTTGGTTCAATCTTAATTCCTATAGTCTGACATAGTACTTGTCATTTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTAGCCTATATATATTTCTATATTAGAGGAATGTTCCATGTGCTGATGAATAAGTCTTATGTTTATTTGTTATTGCGTCTTCTCCCTTATCCCTGTAAATCCGTTGTTGTAAGGAGTGTAGTTTAAAGTACATTGTTTTTCTTTGTTAACTTTTCTATCTTGATGATCTGTATCTAGTGCTGTCATTAGATGCTAAGTCCCTATTGCTGTGTTACCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTGGGGCGCTCAGTATTAGGCACCCATGTTTAGGATTGTGATATTTTTCGTTCGTCCTTTTATCATTATAATGTCTCTCTTTGTATTTTTTACCGGCTGTTGCTTCGTTTGTTTTGTCTGATACAGAATAGTTATTCCTGCTTGCTTTTTAGTGTCCATTGCATGGGATATCTTTCTACCTTTACCGTATATGAGTCCTTAGTATTGGTGAGTCTAGTAGAGACAGTAGATACTTAGTTAGGTAATTCTCCATTCTGCCATTCTGTATCTTTTTAGGTGGAGCGTAGGCCATTTATTCAGTGTTAGTATTGAGATGGTACTATTCTATTCATCGCGATATTTGGTGCCTAGATACCTTGGTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGAGGATTAAACGCAAAAACGGAACGCCGAA -3: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.590575, "nblock" : 5778, "sequence_length" : 2399, "blocks_per_base" : 2.408504, "nsample" : 29150, "trim" : [ 200, 29090 ] } -3: TCGGTGCGCATTCAAGCCAACCCTACCTCCTTCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTCGCGCCCCTTCCGCTTGAATCGCCTTCACTAAGTATGTTGGTCCCACATGATAATTCGTAGATTGCATCGACTCCGTTTCCGAATGAACGTGGATCGGCATTTCAGTAGTAGGCTGGGGCGGATGGAAAAATCAGCGTGCCCTCTCCACAATCGATCATCCGTTTGTCGGCCGGTACGGTAGGACCAGTCGAACTACTCAACCATTACCTAGATGAGGAATCCGTTGATTTTGCATCGTTGGGATCAGTTGGTAAATTCAATAGAATAGTTGTCCTAGACAGGTTGATGGATGGGAGAACAAAGCGGGGCCATGGGCGGGATAATGGGCGGTTGGAAATGGGATACAGCTCCATTCAGCCCTACACTTCCATTCCTCGTATGCTACGATGAATCAGGCCATGCATATCGCTTTTATTGGCCATCAGTATAATTCCAGCCTACCGATATCGATCCATCCTAATTAAGTAGGTGGCTCTCAATGGATCAAGAGATTTAAACATCACAGGTAGGATGATCGTCAGGACTCAGACCTTCAGGAATAATCATGCGCCACCTCCTTTCACATGTCATTCAGTGTGGTATGGTAGGGTAAAATCACCTTCATTCGTACTTGCCTTCAGGCGATTTCAGATAGGTTTGAAACGAATCTGTTGGTATCGGACGAAAATTGGATCAACATACATCAGTAAACTGCATTCCGCTCGACATAGCTCTGGACTTTAGCATAGATACATTAGGCTGGCATGAATTGTGGGAGGAGCCCTCGGAATGGACTTGTCTGGGAGAATTTGAGATCCTAAAAGTGAGATGGCACTACTCTACTCCTCGTCGATGGATCCGCTTGTACAATACAATCCAATTTCTAGATGAATGAAATAGTAGGTGGTTGTGGGCCAGCATGGAGCAGGACCCTTCACTACAGCCACCTCCGATGCGGGGTTCATTGAGGTGCATTCTGCGTGCCTCTGTCGTGCAGGTACCTTAATAAGCCGGGAGGCATTTCAAAGCTGAATCAGGAGGTAAAAATGAGTAGGATTTTAAGCCGCCGAATGGGAAGAACATCCTCTCGTTACCGGCGCAGAATGCACTTCCTGCCGGCCAGGCCAGTCAAAATGTACGCCAGCCAGGAATCAGGAATAAAGACTCAGTCAGTGAACGGCGAGCCCGCGCTGTGCTTCCGCCACAGTGGTAGAAAAACGTCCAGGATCAAATTACGTATTTCAATTCCGTGGAACAATTTGAAAGGCTAAAGCCTAGTAAAATTCAACTGGACGGACAGAGCCCGGAAAAAGCCTCCCTACCCCACTTCAAAGCGGAATGAACGCGGGCTCAAACCCTACAAAATCGCGTATTAAGTAACATTTCGCCCGTACTACACTATCAATCAGCCATTACCTCCGTAAAATACCAAATAGGTGAGAAAATTTGCATCCGCCATCGTACAGCCATCAAATTAGCCCACTCAAAATGGAATTTTGGATGAAAAAGGTATCATTCGACTCACCCCCTTACTTAATATTACGCTGCTCGCGTAAATATTTCCCTTTATACCATCCCAATGCATGCCCAATGCTTAGCATCATGTATTTCGACTCAACACCCACCATGCGCGATGGCGTAAATATAGAAACCAGATACGAGATTTCAGGCATGCCACGCCAGCGGTCAGTATAAACCGGGCAAAATCAAATAGCCGCCAGGCTCCGGACGGTGAGGCGAGATACCGGGTAGATGGGCTGGCGCGCTACATACTCCCAGAAATAGGGCATGGAAGCGCTCCATCGGCGCGATACCAAGATGGGCCGGCACCACTTCACGCCAGCATCTAAATTTTGCCTCGATAAAAGAAATCGTCCCCGACGGTACCGACCCATGAACAGGCATTTTGTTGCCCCGTCGCGCTTGCCACCCATTCCAAAATAGGTGGCGCCAGTACGAAGCGGGCTGAGCTAAACGCGCGCACCGCTCAATGAATCGCATCATCAGCCTTCATCCTCGTACCAGATACCATGGCCTCCTCCACAGCCCGAAAATAGCAAATATCCCTTCAATATGCGCTGATGGGCTGGAAACAGTATGAATAGGCGGGCGGGCCAATGGAATGGCTATCAACAGCCAGCGAATGAACCGCTTCCAATAGGTAGAGCTAAATGCGCGGAGAAATTTGGCCTCCCGTACCGGCCAAACCTAATCAAAATTCTCCTTCGACGGGCAGCTACAGGCGAACAGCGCCAGTGAAAAACATGCGGAGCGGATGGGGTCCGTATCGCTTCGACGAAACTGCCTCCAGCAGGAAAATCAGCTGTCTCATGAAGCGGTGCGCATGAAA - 2/19 Test #3: test_raw_call .................... Passed 10.53 sec +5: ATGAAACTATAATTTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTTATTTTCTAACTGTGAAAATATACTTGGACCTGATTAGTTTTGTATATTTGCATATTGGCTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAAATTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATATACTGATGAAGAAGAGATGATGTTTGGTTTTCATTCTGGGGGTTGCTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTTATTTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAAAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCGCCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } +5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG + 3/19 Test #5: test_rawrgrgr_r941_call .......... Passed 14.14 sec test 8 Start 8: test_event_table @@ -114942,7 +114986,7 @@ 8: 12394 64075 0.000000 0.000000 1072576662 8: 12395 64078 -2.000000 -0.000000 1073238564 8: 12396 64083 0.000000 -2.000000 1072952450 - 3/19 Test #8: test_event_table ................. Passed 0.23 sec + 4/19 Test #8: test_event_table ................. Passed 0.16 sec test 9 Start 9: test_mappy @@ -122169,6 +122213,16 @@ 9: 7215 1.929044 0 C 0.041604 0.315691 0.652851 9: 7216 1.268043 0 C 0.041604 0.315691 0.652851 9: 7217 0.984757 0 C 0.041604 0.315691 0.652851 +2: ATTTTTTTAACAATTGGAAATTCAGTTTTTTGTATTTAACGAATTTTTTTATTTTCTAACTGTGAAAATATATTGGACGGTCGTTTTGTATATTTGGCATATTATTTGTAATATTTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTGTATATTAATCATGCGATTATGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTGCTTTATTGTCCTGGCTGAATATTCTTTACTGTTGGATGGAAGGATGTTAATGACATCAAATATCTTGTTAAGATCTCAATTGCAAGATTTTATATTGTATTATTTTTTTAGTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTCTTTACTGGTGATTTGACATTTTGTACCTGTCACCTGAGCAGTATTATCAGTGGTAGTCTTTTATCATATCATCTCTTGTTCCCCAAATTATCAAGTCCGTGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGATGATGTTTGGTTTTCATTCTAGAGTTACTTCATGATAATGATCTCCAAATTCCATTCAAATTTGCTGAAAATGCATTATTTCGTTCCTTTTGTGGCTGGTAATATTCCATAGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGAGCTGGTTTTCATATTTTTTCAGGTACAGAATTGCTGCTATAAACATTTATTTTCATTACGTAATCTATTTCGTATAATGACTATTCTGGGCCAAAGGTAGGTCTAAAAGATCTGCTTTTAGTTCTTTAAGATCTCCACACCTTTACATTAATGGTTATACTAGTTTACATTCCCATCAATATTCTTAAATTGTTTCCTTTTCACCAATCACCAACATCTATTGTTTTGATTTTTTTATTAGGGGCCGTTCTTTCAGGGTGAGTGGTATCCCACTGTGGTTTTTTGATTTACATTTCCCTGATCATTAGTGATGTTGGGCATTTTAATACAGGCCATTTATATCTTCTTTGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTCTCCATCTCTGTCAGGTTGTCGTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTTCTTGGTCGCGAAGTCTTTTGCCTAATAACCCAATGTCTCTAGAAGGTTTTCAACGTTATCTTCTAGAATTTTTTTATAGGGTTTCATCTTAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTTGTATAAGGTGAGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCAGGTTACCAATTCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTGTTGAGGATCAGTTGGCTGTAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATGCCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAATGTGATGCCTCCAATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGAATGATGGTGGTATTTTTTGATGAGGAATTGCATTAGTTGTAGGTACTTTTGGCAGTATGGTCATTTTCACAATATTGATTTACTCATCCATGAGATAGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTGCAGCTAATGTAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCGCCTTATACTTGAGGCTACTGATTTGTGTACATTAATTTTGTATCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTGGGTTTTCTAGGTATACGATCATATCATCCTTAAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCGCACGGGAAATGCTTTCTTTTCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTATCACAGGTGGTTTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGATGCTGGATTTTTTGTCAAATATTTTTTTTCTGTGTTTGTGAGATGATCATGTGATTCTTGTTTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGATTTTTTGCATCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTTGTTATATGTCCTTTCCTGGTTTTGATATTACAGTGATACTGCTTCATTGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAGCTAGGATTGGTACCAATTTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCACAAACTATTTTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGGTTGTATCTTTCCAGGAATTTATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTGAGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTTGTTTTATCTTTTGTATGTTTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTTTCTGCTGGGTTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATTTATGTAGGTAATGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCACAGAAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTAGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCAGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAATTTTTTTACATTTCTATCCTGATTTCATTGATGCCCAATGATTTTCTAGGAAGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTTGGGGTTGATTTCCAATCTTAATTCCTGTAGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCTGTATATATTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTGCATTTGTTGAATCTTCTCCACATATCCTGTAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCATTGGGTACTGAAGTCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTCCTGGATTCGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTTTACCGGCTGTTGCTTTAAGTTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTAGTGTCCATTTGCATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTAGTGAGTCTAGTAGAGACAGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTTAAGTGGAGCATTTAGGCCATTTACATTCAGTGTTAGTATTGAGATGAGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTTTTTTTAAATCATTGCATTATTGTTTTATAAGATCCTGTGAGAGGTTAAACGCAAAACAGACGCCGAAGACT +2: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.459646, "nevent" : 5787, "sequence_length" : 1694, "events_per_base" : 3.416175 } +2: CTCAGTGCATTAACCAACCTACCTTCAATGCTCCACCATCCAGCCTCGGTAATAATTACGCGCCCCTTCCCTTGAATCACCTTCACTAAAAGCCATGTTGAATCCCACAATGTAGGCCATCAGCTCAGGAAATAGAACATCAGCATGGGAGGTAGTAAGGCAGATGAAAAAATCATGCCTCTCATCAGTGCCAGTAGAATGACTCATTTCTCAATACCTAAAATAAAGAAATCGATGATTTACATGAGATCAGAATGGGCCGTAACAAACAGGTGCTCTGACAGGTGCCCAATCGATAGAGAACAAAGCAGGGAATAATGACTGGTTGACCAGAGCCAATCCTTCCATTCAACCCTACACTATTCCAATGATATTGTCACATATCACTTGTGTGCCATCAATATATTCAACACTTCTCCAATCCATATGGCCAACCAGATCAAAGGTGGCATCACAAGCCAAGGCCGGTGTCAGGAATTTCAGACCAAATATCATGCCTTCATTCAGTAGGTAGCGTATCTGCCGCTGTAAAATCAGACAAAGCCAGATCCGCCATAATGCTTCCTTCCACTCGGCCTCACTTCTCATCATTAAACCTCAGGCATGCCGAAATGGAACATGGAGCCCTAAAATGAATAGCCTCATCAGTGGGTAATCCCACTGTCATCTAATCAAAGGCCCCATACATTCATCAGAATAGAAATGGTGGTGGCATGGAACCCTTCTGAACAACATCTCAAATGCAGTGCTTCAATGAAGTAAACCTGCTCATAGGAGGCAGCTAAGCTAAAATCAGGAAAATTGCATGGTTACAAGCCCGCCGAAATGAATACAAAGCGCAAACCACTACCAGCCCCAGAATAATCAATAAATATACATAGCCAGAATCGAATAAGTCAGTATGACGCCGCGCTTCAATAGTAGCAATCAGATCAGCATTATTTATCCTTCAATCCAATAGGAAATTCCTTCAAATGCTAGACGGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAATGAGCTCAATCTCCATATTAATGCTTCATTGCCATCTCCACTATCATCCTTATTATTCTCAATAAAACCATAAACAAGTGAGGCCCATCCATAAATAAATGCAGCCATCCAGATAGCCTCAAAATAAGGCTGAGTATCATTCATTCACCCCTTGCCAATATTCTCATCCTTCCCTTCTCCATCCCAGCCATGCCATCTTAACATCGCTCAGCATTTTGATAGCGTAAATAGATAGGTCAATTTCAGAGCAGTCAAAATAAATAGGCTGGAAATCAAATGTGAGGCAGATGCCAGTGGAATGGTGGGCGCTCCATTGACACCACTTCCTCCAGCTCAATTTTCTCGATAAAAGAAATCGATCTGAACAATTTTGTTGCCCGTCGCTTATTCCAAATAGTGGCGCTGACTAAACACCGCTCAATGAATCATCATCAACCTTCTACTCGTACCAGATGCCTCATCAGCCAAAATCAAATATCCTTCAATAAGTGGGCAGTATGAATGGTGGGCCAATGGTACTATCAGCCAGAATGTTCTTCGAAAATAGTGACCTAAATGGAAAATTTGGCCTCGTACCAGTAAATAAATTCTGACGAGCATCAGTGAAAAAAACATGTAGACGGATGGGTCGGCTGCCTCCAGCATTTCCATCTCATGAAGCGGGCGCATGAAA + 5/19 Test #2: test_events_call ................. Passed 14.59 sec +test 10 + Start 10: test_seqmappy + +10: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "seqmappy" "/build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa" "/build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5" +10: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 +10: Test timeout computed to be: 10000000 9: 7218 0.890328 0 C 0.041604 0.315691 0.652851 9: 7219 0.836369 0 C 0.041604 0.315691 0.652851 9: 7220 0.782409 0 C 0.041604 0.315691 0.652851 @@ -179346,28 +179400,13 @@ 9: 64392 59.267578 0 C 0.041604 0.315691 0.652851 9: 64393 58.711945 0 C 0.041604 0.315691 0.652851 9: 64394 57.415466 0 C 0.041604 0.315691 0.652851 - 4/19 Test #9: test_mappy ....................... Passed 0.70 sec -test 10 - Start 10: test_seqmappy - -10: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "seqmappy" "/build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa" "/build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5" -10: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 -10: Test timeout computed to be: 10000000 -5: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAAGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCCATGGTTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGCTTAATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTATTTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCACATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCCAAAATATATATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCAGCTTGTTTAAACAAATGAAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTTTGCAAGCATGGGGAACCACCCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGAGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGACCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTGTTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGAGGCCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC -5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } -4: ATGAAACTATAATTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTATTTTCTAACTGTGAAAATATACTTGGACTGATTAGTTTTGTATATTTGCATATTATTTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAATTTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGAGATGATGTTTGGTTTTCATTCCTGGGGGTTACTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGCTGCTATAAACATATTTATTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA -4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } -4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG - 5/19 Test #4: test_rawrgrgr_r94_call ........... Passed 13.12 sec + 6/19 Test #9: test_mappy ....................... Passed 0.64 sec test 11 Start 11: test_squiggle_r94 11: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "squiggle" "--model" "squiggle_r94" "/build/reproducible-path/scrappie-1.4.2/reads/test_squiggles.fa" 11: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 11: Test timeout computed to be: 10000000 -2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTTTCTTCTTTACTTACAGTGTTTTGGTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGGGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA -2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175321, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } -6: scrappie: No basecall returned for /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 11: #one 11: pos base current sd dwell 11: 0 T -0.010010 0.502174 1.176593 @@ -182867,6 +182906,8 @@ 11: 913 C 0.255411 0.100457 7.447396 11: 914 A 0.078750 0.085782 8.936707 11: 915 C 0.690872 0.107165 7.216990 +4: ATGAAACTATAATTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTATTTTCTAACTGTGAAAATATACTTGGACTGATTAGTTTTGTATATTTGCATATTATTTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAATTTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGAGATGATGTTTGGTTTTCATTCCTGGGGGTTACTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGCTGCTATAAACATATTTATTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } 11: 916 C 0.063825 0.125462 7.512209 11: 917 T 1.840280 0.175977 7.643038 11: 918 C 0.707252 0.141712 6.249586 @@ -183604,6 +183645,7 @@ 11: 680 C 0.016796 0.125678 8.562202 11: 681 T 1.575053 0.171139 9.461083 11: 682 C 0.137402 0.177617 7.283690 +4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG 11: 683 G -1.694560 0.174511 9.621695 11: 684 T 0.693537 0.153583 5.662863 11: 685 T 0.693875 0.134123 5.856952 @@ -183849,6 +183891,13 @@ 11: 925 A -0.018874 0.089922 6.853965 11: 926 C 0.314718 0.107410 7.636100 11: 927 T 0.989648 0.215371 8.224966 + 7/19 Test #4: test_rawrgrgr_r94_call ........... Passed 15.07 sec +test 12 + Start 12: test_squiggle_r10 + +12: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "squiggle" "--model" "squiggle_r10" "/build/reproducible-path/scrappie-1.4.2/reads/test_squiggles.fa" +12: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 +12: Test timeout computed to be: 10000000 11: 928 G -0.823620 0.182883 9.532692 11: 929 T 1.573712 0.225036 8.878210 11: 930 C -0.339261 0.145216 8.672426 @@ -184507,13 +184556,127 @@ 11: 603 G -0.348534 0.163240 9.530728 11: 604 C 0.161046 0.266937 15.063374 11: 605 T 0.194787 0.502125 16.019983 - 6/19 Test #11: test_squiggle_r94 ................ Passed 1.63 sec -test 12 - Start 12: test_squiggle_r10 + 8/19 Test #11: test_squiggle_r94 ................ Passed 0.13 sec +test 13 + Start 13: test_licence -12: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "squiggle" "--model" "squiggle_r10" "/build/reproducible-path/scrappie-1.4.2/reads/test_squiggles.fa" -12: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 -12: Test timeout computed to be: 10000000 +13: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "license" +13: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 +13: Test timeout computed to be: 10000000 +13: This software is subject to the terms of the Mozilla Public +13: License, v. 2.0. If a copy of the MPL was not distributed with this +13: file, You can obtain one at http://mozilla.org/MPL/2.0/. +13: +13: (c) 2017 Oxford Nanopore Technologies Ltd. +13: +13: +13: +13: The vectorised math functions 'src/sse_mathfun.h' are from +13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is +13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. + 9/19 Test #13: test_licence ..................... Passed 0.03 sec +test 14 + Start 14: test_help + +14: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "help" +14: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 +14: Test timeout computed to be: 10000000 +14: Scrappie is a technology demonstrator for the Oxford Nanopore Technologies +14: Limited Research Algorithms group. +14: +14: Basic usage: +14: * scrappie events Base call from event based data. +14: * scrappie help Print general help or help about specific Scrappie command. +14: * scrappie licence Print licensing information. +14: * scrappie raw Base call directly from raw signal. +14: * scrappie version Print version information. +14: * scrappie squiggle Create approximate squiggle for sequence +14: * scrappie mappy Map signal to approximate squiggle +14: * scrappie seqmappy Map signal to sequence via basecall posteriors +14: * scrappie event_table Output table of events for read +14: +14: This project began life as a proof (bet) that a base caller could be written +14: in a low level language in under 8 hours. Some of the poor and just plain odd +14: design decisions, along with the lack of documentation, are a result of its +14: inception. In keeping with ONT's fish naming policy, the project was originally +14: called Crappie. +14: +14: Scrappie's purpose is to demonstrate the next generation of base calling and, as +14: such, may change drastically between releases and breaks backwards +14: compatibility. Newer versions may drop support of current features or change their +14: behaviour. +10/19 Test #14: test_help ........................ Passed 0.02 sec +test 15 + Start 15: test_help_events + +15: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "help" "events" +15: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 +15: Test timeout computed to be: 10000000 +15: Usage: events [OPTION...] fast5 [fast5 ...] +15: Scrappie basecaller -- basecall via events +15: +15: -#, --threads=nparallel Number of reads to call in parallel +15: --dump=filename Dump annotated events to HDF5 file +15: --dwell, --no-dwell Perform dwell correction of homopolymer lengths +15: -f, --format=format Format to output reads (FASTA or SAM) +15: --hdf5-chunk=size Chunk size for HDF5 output +15: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, +15: 1: quickest, 9: best) +15: --licence, --license Print licensing information +15: --local=penalty Penalty for local basecalling +15: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +15: -m, --min_prob=probability Minimum bound on probability of match +15: -o, --output=filename Write to file rather than stdout +15: -p, --prefix=string Prefix to append to name of each read +15: --segmentation=chunk:percentile +15: Chunk size and percentile for variance based +15: segmentation +15: --slip, --no-slip Use slipping +15: -s, --skip=penalty Penalty for skipping a base +15: --temperature1=factor Temperature for softmax weights +15: --temperature2=factor Temperature for softmax bias +15: -t, --trim=start:end Number of events to trim, as start:end +15: --uuid, --no-uuid Output UUID +15: -y, --stay=penalty Penalty for staying +15: -?, --help Give this help list +15: --usage Give a short usage message +15: -V, --version Print program version +15: +15: Mandatory or optional arguments to long options are also mandatory or optional +15: for any corresponding short options. +15: +15: Report bugs to . +11/19 Test #15: test_help_events ................. Passed 0.03 sec +test 16 + Start 16: test_help_event_table + +16: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "help" "event_table" +16: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 +16: Test timeout computed to be: 10000000 +16: Usage: event_table [OPTION...] fast5 [fast5 ...] +16: Scrappie basecaller -- basecall via events +16: +16: --licence, --license Print licensing information +16: -o, --output=filename Write to file rather than stdout +16: --segmentation=chunk:percentile +16: Chunk size and percentile for variance based +16: segmentation +16: -t, --trim=start:end Number of events to trim, as start:end +16: -?, --help Give this help list +16: --usage Give a short usage message +16: -V, --version Print program version +16: +16: Mandatory or optional arguments to long options are also mandatory or optional +16: for any corresponding short options. +16: +16: Report bugs to . +12/19 Test #16: test_help_event_table ............ Passed 0.04 sec +test 17 + Start 17: test_help_raw + +17: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "help" "raw" +17: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 +17: Test timeout computed to be: 10000000 12: #one 12: pos base current sd dwell 12: 0 T 0.273674 0.499835 0.755774 @@ -187042,6 +187205,50 @@ 12: 2523 T -0.083219 0.260580 7.076826 12: 2524 A -1.159863 0.143544 8.895534 12: 2525 T -0.833608 0.215293 6.887578 +17: Usage: raw [OPTION...] fast5 [fast5 ...] +17: Scrappie basecaller -- basecall from raw signal +17: +17: -#, --threads=nparallel Number of reads to call in parallel +17: -f, --format=format Format to output reads (FASTA or SAM) +17: --hdf5-chunk=size Chunk size for HDF5 output +17: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, +17: 1: quickest, 9: best) +17: -H, --homopolymer=homopolymer Homopolymer run calc. to use: choose from +17: "nochange" or "mean" (default). Not implemented +17: for CRF. +17: --licence, --license Print licensing information +17: --local=penalty Penalty for local basecalling +17: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +17: --model=name Raw model to use: "raw_r94", "rgrgr_r94", +17: "rgrgr_r941", "rgrgr_r10", "rnnrf_r94" +17: -m, --min_prob=probability Minimum bound on probability of match +17: -o, --output=filename Write to file rather than stdout +17: -p, --prefix=string Prefix to append to name of each read +17: --segmentation=chunk:percentile +17: Chunk size and percentile for variance based +17: segmentation +17: --slip, --no-slip Use slipping +17: -s, --skip=penalty Penalty for skipping a base +17: --temperature1=factor Temperature for softmax weights +17: --temperature2=factor Temperature for softmax bias +17: -t, --trim=start:end Number of samples to trim, as start:end +17: --uuid, --no-uuid Output UUID +17: -y, --stay=penalty Penalty for staying +17: -?, --help Give this help list +17: --usage Give a short usage message +17: -V, --version Print program version +17: +17: Mandatory or optional arguments to long options are also mandatory or optional +17: for any corresponding short options. +17: +17: Report bugs to . +13/19 Test #17: test_help_raw .................... Passed 0.03 sec +test 18 + Start 18: test_help_squiggle + +18: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "help" "squiggle" +18: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 +18: Test timeout computed to be: 10000000 12: 2526 T 1.226973 0.187758 8.868385 12: 2527 A 0.326663 0.163646 8.637399 12: 2528 A 0.776825 0.159115 7.422457 @@ -189008,6 +189215,31 @@ 12: 938 A 0.407659 0.175595 10.353537 12: 939 G 1.101753 0.140163 9.739885 12: 940 T 0.445780 0.120623 8.930588 +18: Usage: squiggle [OPTION...] fasta [fasta ...] +18: Scrappie squiggler +18: +18: --licence, --license Print licensing information +18: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +18: -m, --model=name Squiggle model to use: "squiggle_r94", +18: "squiggle_r94_rna", "squiggle_r10" +18: -o, --output=filename Write to file rather than stdout +18: -p, --prefix=string Prefix to append to name of each read +18: --rescale, --no-rescale Rescale network output +18: -?, --help Give this help list +18: --usage Give a short usage message +18: -V, --version Print program version +18: +18: Mandatory or optional arguments to long options are also mandatory or optional +18: for any corresponding short options. +18: +18: Report bugs to . +14/19 Test #18: test_help_squiggle ............... Passed 0.03 sec +test 19 + Start 19: test_version + +19: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "version" +19: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 +19: Test timeout computed to be: 10000000 12: 941 T 0.111700 0.122114 8.976299 12: 942 G -0.941675 0.146818 8.386247 12: 943 T -1.290152 0.129500 8.042553 @@ -189653,211 +189885,10 @@ 12: 603 G -0.572062 0.335164 12.230327 12: 604 C 0.561030 0.467363 9.792212 12: 605 T -0.235200 0.581865 6.671800 - 7/19 Test #12: test_squiggle_r10 ................ Passed 0.74 sec -test 13 - Start 13: test_licence - -13: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "license" -13: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 -13: Test timeout computed to be: 10000000 -5: ATGAAACTATAATTTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTTATTTTCTAACTGTGAAAATATACTTGGACCTGATTAGTTTTGTATATTTGCATATTGGCTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAAATTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATATACTGATGAAGAAGAGATGATGTTTGGTTTTCATTCTGGGGGTTGCTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTTATTTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAAAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCGCCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA -5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } -5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG - 8/19 Test #5: test_rawrgrgr_r941_call .......... Passed 15.79 sec -test 14 - Start 14: test_help - -14: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "help" -14: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 -14: Test timeout computed to be: 10000000 -14: Scrappie is a technology demonstrator for the Oxford Nanopore Technologies -14: Limited Research Algorithms group. -14: -14: Basic usage: -14: * scrappie events Base call from event based data. -14: * scrappie help Print general help or help about specific Scrappie command. -14: * scrappie licence Print licensing information. -14: * scrappie raw Base call directly from raw signal. -14: * scrappie version Print version information. -14: * scrappie squiggle Create approximate squiggle for sequence -14: * scrappie mappy Map signal to approximate squiggle -14: * scrappie seqmappy Map signal to sequence via basecall posteriors -14: * scrappie event_table Output table of events for read -14: -14: This project began life as a proof (bet) that a base caller could be written -14: in a low level language in under 8 hours. Some of the poor and just plain odd -14: design decisions, along with the lack of documentation, are a result of its -14: inception. In keeping with ONT's fish naming policy, the project was originally -14: called Crappie. -14: -14: Scrappie's purpose is to demonstrate the next generation of base calling and, as -14: such, may change drastically between releases and breaks backwards -14: compatibility. Newer versions may drop support of current features or change their -14: behaviour. - 9/19 Test #14: test_help ........................ Passed 0.04 sec -test 15 - Start 15: test_help_events - -15: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "help" "events" -15: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 -15: Test timeout computed to be: 10000000 -13: This software is subject to the terms of the Mozilla Public -13: License, v. 2.0. If a copy of the MPL was not distributed with this -13: file, You can obtain one at http://mozilla.org/MPL/2.0/. -13: -13: (c) 2017 Oxford Nanopore Technologies Ltd. -13: -13: -13: -13: The vectorised math functions 'src/sse_mathfun.h' are from -13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is -13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. -10/19 Test #13: test_licence ..................... Passed 0.35 sec -test 16 - Start 16: test_help_event_table - -16: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "help" "event_table" -16: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 -16: Test timeout computed to be: 10000000 -15: Usage: events [OPTION...] fast5 [fast5 ...] -15: Scrappie basecaller -- basecall via events -15: -15: -#, --threads=nparallel Number of reads to call in parallel -15: --dump=filename Dump annotated events to HDF5 file -15: --dwell, --no-dwell Perform dwell correction of homopolymer lengths -15: -f, --format=format Format to output reads (FASTA or SAM) -15: --hdf5-chunk=size Chunk size for HDF5 output -15: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, -15: 1: quickest, 9: best) -15: --licence, --license Print licensing information -15: --local=penalty Penalty for local basecalling -15: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -15: -m, --min_prob=probability Minimum bound on probability of match -15: -o, --output=filename Write to file rather than stdout -15: -p, --prefix=string Prefix to append to name of each read -15: --segmentation=chunk:percentile -15: Chunk size and percentile for variance based -15: segmentation -15: --slip, --no-slip Use slipping -15: -s, --skip=penalty Penalty for skipping a base -15: --temperature1=factor Temperature for softmax weights -15: --temperature2=factor Temperature for softmax bias -15: -t, --trim=start:end Number of events to trim, as start:end -15: --uuid, --no-uuid Output UUID -15: -y, --stay=penalty Penalty for staying -15: -?, --help Give this help list -15: --usage Give a short usage message -15: -V, --version Print program version -15: -15: Mandatory or optional arguments to long options are also mandatory or optional -15: for any corresponding short options. -15: -15: Report bugs to . -11/19 Test #15: test_help_events ................. Passed 0.03 sec -test 17 - Start 17: test_help_raw - -17: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "help" "raw" -17: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 -17: Test timeout computed to be: 10000000 -16: Usage: event_table [OPTION...] fast5 [fast5 ...] -16: Scrappie basecaller -- basecall via events -16: -16: --licence, --license Print licensing information -16: -o, --output=filename Write to file rather than stdout -16: --segmentation=chunk:percentile -16: Chunk size and percentile for variance based -16: segmentation -16: -t, --trim=start:end Number of events to trim, as start:end -16: -?, --help Give this help list -16: --usage Give a short usage message -16: -V, --version Print program version -16: -16: Mandatory or optional arguments to long options are also mandatory or optional -16: for any corresponding short options. -16: -16: Report bugs to . -12/19 Test #16: test_help_event_table ............ Passed 0.03 sec -test 18 - Start 18: test_help_squiggle - -18: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "help" "squiggle" -18: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 -18: Test timeout computed to be: 10000000 -17: Usage: raw [OPTION...] fast5 [fast5 ...] -17: Scrappie basecaller -- basecall from raw signal -17: -17: -#, --threads=nparallel Number of reads to call in parallel -17: -f, --format=format Format to output reads (FASTA or SAM) -17: --hdf5-chunk=size Chunk size for HDF5 output -17: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, -17: 1: quickest, 9: best) -17: -H, --homopolymer=homopolymer Homopolymer run calc. to use: choose from -17: "nochange" or "mean" (default). Not implemented -17: for CRF. -17: --licence, --license Print licensing information -17: --local=penalty Penalty for local basecalling -17: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -17: --model=name Raw model to use: "raw_r94", "rgrgr_r94", -17: "rgrgr_r941", "rgrgr_r10", "rnnrf_r94" -17: -m, --min_prob=probability Minimum bound on probability of match -17: -o, --output=filename Write to file rather than stdout -17: -p, --prefix=string Prefix to append to name of each read -17: --segmentation=chunk:percentile -17: Chunk size and percentile for variance based -17: segmentation -17: --slip, --no-slip Use slipping -17: -s, --skip=penalty Penalty for skipping a base -17: --temperature1=factor Temperature for softmax weights -17: --temperature2=factor Temperature for softmax bias -17: -t, --trim=start:end Number of samples to trim, as start:end -17: --uuid, --no-uuid Output UUID -17: -y, --stay=penalty Penalty for staying -17: -?, --help Give this help list -17: --usage Give a short usage message -17: -V, --version Print program version -17: -17: Mandatory or optional arguments to long options are also mandatory or optional -17: for any corresponding short options. -17: -17: Report bugs to . -13/19 Test #17: test_help_raw .................... Passed 0.02 sec -test 19 - Start 19: test_version - -19: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse3/scrappie "version" -19: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse3 -19: Test timeout computed to be: 10000000 -18: Usage: squiggle [OPTION...] fasta [fasta ...] -18: Scrappie squiggler -18: -18: --licence, --license Print licensing information -18: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -18: -m, --model=name Squiggle model to use: "squiggle_r94", -18: "squiggle_r94_rna", "squiggle_r10" -18: -o, --output=filename Write to file rather than stdout -18: -p, --prefix=string Prefix to append to name of each read -18: --rescale, --no-rescale Rescale network output -18: -?, --help Give this help list -18: --usage Give a short usage message -18: -V, --version Print program version -18: -18: Mandatory or optional arguments to long options are also mandatory or optional -18: for any corresponding short options. -18: -18: Report bugs to . +15/19 Test #12: test_squiggle_r10 ................ Passed 0.21 sec 19: scrappie 1.4.0- -14/19 Test #18: test_help_squiggle ............... Passed 0.04 sec -15/19 Test #19: test_version ..................... Passed 0.03 sec -2: ATTTTTTTAACAATTGGAAATTCAGTTTTTTGTATTTAACGAATTTTTTTATTTTCTAACTGTGAAAATATATTGGACGGTCGTTTTGTATATTTGGCATATTATTTGTAATATTTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTGTATATTAATCATGCGATTATGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTGCTTTATTGTCCTGGCTGAATATTCTTTACTGTTGGATGGAAGGATGTTAATGACATCAAATATCTTGTTAAGATCTCAATTGCAAGATTTTATATTGTATTATTTTTTTAGTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTCTTTACTGGTGATTTGACATTTTGTACCTGTCACCTGAGCAGTATTATCAGTGGTAGTCTTTTATCATATCATCTCTTGTTCCCCAAATTATCAAGTCCGTGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGATGATGTTTGGTTTTCATTCTAGAGTTACTTCATGATAATGATCTCCAAATTCCATTCAAATTTGCTGAAAATGCATTATTTCGTTCCTTTTGTGGCTGGTAATATTCCATAGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGAGCTGGTTTTCATATTTTTTCAGGTACAGAATTGCTGCTATAAACATTTATTTTCATTACGTAATCTATTTCGTATAATGACTATTCTGGGCCAAAGGTAGGTCTAAAAGATCTGCTTTTAGTTCTTTAAGATCTCCACACCTTTACATTAATGGTTATACTAGTTTACATTCCCATCAATATTCTTAAATTGTTTCCTTTTCACCAATCACCAACATCTATTGTTTTGATTTTTTTATTAGGGGCCGTTCTTTCAGGGTGAGTGGTATCCCACTGTGGTTTTTTGATTTACATTTCCCTGATCATTAGTGATGTTGGGCATTTTAATACAGGCCATTTATATCTTCTTTGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTCTCCATCTCTGTCAGGTTGTCGTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTTCTTGGTCGCGAAGTCTTTTGCCTAATAACCCAATGTCTCTAGAAGGTTTTCAACGTTATCTTCTAGAATTTTTTTATAGGGTTTCATCTTAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTTGTATAAGGTGAGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCAGGTTACCAATTCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTGTTGAGGATCAGTTGGCTGTAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATGCCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAATGTGATGCCTCCAATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGAATGATGGTGGTATTTTTTGATGAGGAATTGCATTAGTTGTAGGTACTTTTGGCAGTATGGTCATTTTCACAATATTGATTTACTCATCCATGAGATAGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTGCAGCTAATGTAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCGCCTTATACTTGAGGCTACTGATTTGTGTACATTAATTTTGTATCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTGGGTTTTCTAGGTATACGATCATATCATCCTTAAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCGCACGGGAAATGCTTTCTTTTCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTATCACAGGTGGTTTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGATGCTGGATTTTTTGTCAAATATTTTTTTTCTGTGTTTGTGAGATGATCATGTGATTCTTGTTTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGATTTTTTGCATCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTTGTTATATGTCCTTTCCTGGTTTTGATATTACAGTGATACTGCTTCATTGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAGCTAGGATTGGTACCAATTTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCACAAACTATTTTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGGTTGTATCTTTCCAGGAATTTATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTGAGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTTGTTTTATCTTTTGTATGTTTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTTTCTGCTGGGTTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATTTATGTAGGTAATGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCACAGAAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTAGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCAGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAATTTTTTTACATTTCTATCCTGATTTCATTGATGCCCAATGATTTTCTAGGAAGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTTGGGGTTGATTTCCAATCTTAATTCCTGTAGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCTGTATATATTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTGCATTTGTTGAATCTTCTCCACATATCCTGTAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCATTGGGTACTGAAGTCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTCCTGGATTCGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTTTACCGGCTGTTGCTTTAAGTTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTAGTGTCCATTTGCATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTAGTGAGTCTAGTAGAGACAGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTTAAGTGGAGCATTTAGGCCATTTACATTCAGTGTTAGTATTGAGATGAGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTTTTTTTAAATCATTGCATTATTGTTTTATAAGATCCTGTGAGAGGTTAAACGCAAAACAGACGCCGAAGACT -2: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.459646, "nevent" : 5787, "sequence_length" : 1694, "events_per_base" : 3.416175 } -2: CTCAGTGCATTAACCAACCTACCTTCAATGCTCCACCATCCAGCCTCGGTAATAATTACGCGCCCCTTCCCTTGAATCACCTTCACTAAAAGCCATGTTGAATCCCACAATGTAGGCCATCAGCTCAGGAAATAGAACATCAGCATGGGAGGTAGTAAGGCAGATGAAAAAATCATGCCTCTCATCAGTGCCAGTAGAATGACTCATTTCTCAATACCTAAAATAAAGAAATCGATGATTTACATGAGATCAGAATGGGCCGTAACAAACAGGTGCTCTGACAGGTGCCCAATCGATAGAGAACAAAGCAGGGAATAATGACTGGTTGACCAGAGCCAATCCTTCCATTCAACCCTACACTATTCCAATGATATTGTCACATATCACTTGTGTGCCATCAATATATTCAACACTTCTCCAATCCATATGGCCAACCAGATCAAAGGTGGCATCACAAGCCAAGGCCGGTGTCAGGAATTTCAGACCAAATATCATGCCTTCATTCAGTAGGTAGCGTATCTGCCGCTGTAAAATCAGACAAAGCCAGATCCGCCATAATGCTTCCTTCCACTCGGCCTCACTTCTCATCATTAAACCTCAGGCATGCCGAAATGGAACATGGAGCCCTAAAATGAATAGCCTCATCAGTGGGTAATCCCACTGTCATCTAATCAAAGGCCCCATACATTCATCAGAATAGAAATGGTGGTGGCATGGAACCCTTCTGAACAACATCTCAAATGCAGTGCTTCAATGAAGTAAACCTGCTCATAGGAGGCAGCTAAGCTAAAATCAGGAAAATTGCATGGTTACAAGCCCGCCGAAATGAATACAAAGCGCAAACCACTACCAGCCCCAGAATAATCAATAAATATACATAGCCAGAATCGAATAAGTCAGTATGACGCCGCGCTTCAATAGTAGCAATCAGATCAGCATTATTTATCCTTCAATCCAATAGGAAATTCCTTCAAATGCTAGACGGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAATGAGCTCAATCTCCATATTAATGCTTCATTGCCATCTCCACTATCATCCTTATTATTCTCAATAAAACCATAAACAAGTGAGGCCCATCCATAAATAAATGCAGCCATCCAGATAGCCTCAAAATAAGGCTGAGTATCATTCATTCACCCCTTGCCAATATTCTCATCCTTCCCTTCTCCATCCCAGCCATGCCATCTTAACATCGCTCAGCATTTTGATAGCGTAAATAGATAGGTCAATTTCAGAGCAGTCAAAATAAATAGGCTGGAAATCAAATGTGAGGCAGATGCCAGTGGAATGGTGGGCGCTCCATTGACACCACTTCCTCCAGCTCAATTTTCTCGATAAAAGAAATCGATCTGAACAATTTTGTTGCCCGTCGCTTATTCCAAATAGTGGCGCTGACTAAACACCGCTCAATGAATCATCATCAACCTTCTACTCGTACCAGATGCCTCATCAGCCAAAATCAAATATCCTTCAATAAGTGGGCAGTATGAATGGTGGGCCAATGGTACTATCAGCCAGAATGTTCTTCGAAAATAGTGACCTAAATGGAAAATTTGGCCTCGTACCAGTAAATAAATTCTGACGAGCATCAGTGAAAAAAACATGTAGACGGATGGGTCGGCTGCCTCCAGCATTTCCATCTCATGAAGCGGGCGCATGAAA -16/19 Test #2: test_events_call ................. Passed 16.04 sec -6: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.914597, "nblock" : 16158, "sequence_length" : 31, "blocks_per_base" : 521.225806, "nsample" : 81106, "trim" : [ 200, 80990 ] } -6: TCTGGTTTTTTATTATGTTTTATCTTCCATA -6: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.972209, "nblock" : 5778, "sequence_length" : 3087, "blocks_per_base" : 1.871720, "nsample" : 29150, "trim" : [ 200, 29090 ] } -6: GCTTCAGCATCTGCTGGGTCTTGTCTGCACATCGACAATGATTTCTGCCACTTTCAGCTTTTCACCGAATGTTTTTAGCCTTTTTCAGCCATAACCGCGATACTTTTTCCGTCAACGATAGTGGACACTTCCATAAAATCAACAGCTGCGGGGAAATCGTTGGTTTGAATCATGTTTCAGCAGATAAGCGAGGAATTTATCGGGAACAGAGGTCGCAGATAGCGACAACGTCTCTATTCCTTTGACTTCGCTGATGGACCAATACCAGTCGACCGATACAACCAGAACCGTTGATACCAACTTTGCTCATGGTTTTTTCTGAAACGTTGGATGAAATTGATCCCTTTCGCTTGAACCGGGATGGCGGGAATGACAATCTCCATTCGCATAAAACGTAACGTCTGGAAACGGGTAAACAATATTTTAATTGAAATTCAGAAAAAGCCCGTTTTAACAGAAAATTATGTTGCAAGCCAGAAATATTCTGGAAAATAAATATCAAGGTTACAAAATCAGCGTCACTGGCTGGTCTTTTTACTGGTTATCGCAGCGTATTACGCGCAATGAATTGCGTGGTTTTGCCGCGTGCGCACGATCCAGCCACTGCATGAGCATCATTCTCGCGCTTTCCTCTGGCATCTCGATTTTTGTGCTGATGGTCATCGCCTCTTTTATGAGGCTGGATACCCGACCGCCAGTACCTCAACAGAACCGATGATGAGCGGGACTGGCGCGTTTGCGGAACGTGCGTGGTCGCCACCTCTATTGTTGCCGCTGCCGGTGACTGGTTTTGGTAACGGGCAACCCGTGGTTGCTGCTGGTTTGACGATGCCTTACGCTCAAGAGGCCGATTTTCGAACGGGTAAAGTCACTAAATACGTGGCATGGAAACGCTGGCGAATCTGGGATGTTCCTGTCATCAGGTTAGCGCTGCGCTGCGCCTGGCACGCCACTATTCTGGAAAGGCGAAAGGCCGCTTTTGCGCATGATGCGGCGTTTAAGCCATCCTGAAGGATATTTAAAGAAACGCCCTGTGGAATTCAAAGCCATAATTATAAAGGAGATACAGATCTGTCACGGAAACGCCTGTGCTGTACTGTGTGATGGATGAAACCGTAATCCTTGCCCGTTACGTCATCTGGCTTCTTGATCCGCATTACACCCGATCTTTAATACATCATAATATCAAAATAAACCAGCGTCTTAAGTAATTTTCAGGATCAAACATAAATCGATAAACCATGGAGGTTGCTACATGAAAAAACTGGCTTTATTCTGTTTACTCGGAAACGTTGTTTCCTTTTATCCCGATACCGGGCGAAACCCCGCTCTGGGTTCGAAAGGGGGATCTGGCGCTGTTGCGGCAGGCGGCAAATTCTTTTGTGGTGATATCATACGCTCATGCAGCCAAAAAAGACAACATCAACTAACTAAAATGTGAAAAGGGTGCCATAAAAAATGGATACTGGCGGTCAAATAGCGGGAGAAAATCCCCGCGCTGTACTGGACATGCAGGCCATGAGCGCAGCAACCTCCTTGTCACCAGCCCCGGAGCCGGCATCGTAGAGCGTTTGTCGGGTCAGGAATGTAAATGTCAGAATCGTGATGCGGATAATGACAGACACGCACCAGCAGTTCCACGCTCGTAGCTTTCTGTCCTTGCCGGATGGCGGGTAAGGCCTTCAATCCTGAACTGCTGGTTCCGTTCGTTGGCTTCGATTAATGCGAAAATGTCGGGGCCTTCAGTTTCTGATCACCGGTTAGCCTGGAAACGGAAAGTGCGATATCCCGCAGGGCGTTTTGTAAGGTTTTATTCAGGGGACAAGAAATGATCATTTCACGAAATTGCGTGCTGTCTTCCAGAATTTTTCCATCGTTCGGGTTAGCCAGTTTTAGCCATCGTACTCTCTTCATTTCCAATAGCATTAATTTTCTATGCAATAATGTTGCTGAAGCATGATAACAAAAGATTTTGGTCAGTGATAATTACCGTCAATGCCAAATCGTTATCAGGAGTGAACCTGGACGGCGAAAAACAACCAATAATGAATGGCACTCCTCGCAGCGATTGGTTGCCGCGCATCGCGTCGGGTTGGTTCGTTATTGCCTGCGTCTTCGGCGGTATTTTTGACTATTCGCGTAAGTCGGCCTGGCTGGCTATTTCCTCTGGCAGGCCGATCACGATCAGCGTGGTCTGCCAGAAATTAAAATTCGAACCGGGTTAAAAACATGCAATTGTTGCCATCAGCCCGGATGCGGCGTGATCAGCCCGGGGCTGCAAGTCGTGTTACGGAAATGGAAGCGATGAACCAAATATCGCGCAACCAGATCGAAATTAAACAGTGGCAGCAGGTTATCGTGCTGCGGAATGGGCCGGTGAAAACACCTGCTGGTGAAGCCCTCCGACGCTGAATTAAATCAACGCTTTCAGGCTTATATCGCGGGTATTGATCCTGTATTGAAATATGCCAAAACTGGCGTATGAAGGCGATATCAATCATGAAAGCTGACAGACCCGACCGCTGGATAATGCTTATACCCGATATTTTGAAGCAGATTCGTCAGTCTGGCGGCTACGAAACGACGGCTGGCGGAACTGTAACCATCAGCGCACCCGCCTGGGTCGAATGCCGTGATTGGCGCGTTTGTCTTTGCCCTGGTCCTGCCTGACACTGATAACCGTTGTAGTGCTGCATCCAGATCATCATTTCGTCACTAAGTATTGCCGCGCAACAGATGAAGATTCGCCAGGTGGCAGTGAATGATGAACCAGCAGGTCGTAATGAAATCATCTTTAAGTCATCAGTCAGCGAATGCGCATTCACTGGGGATGACGGTCAGGAGCTGTTCGACGGGCGCGGAAGAGATTTATCATGGCACCAGCGAACCTGCGCTGGCGATGCGGACCTGTTATCTCGCGCTGGAGAACAACACGGCTATCGAAGCGACTGCCGCGCATCAAAACAACCACTCGTAACGGAAAACGGAATGCGGATAGCGCGCGTCGTGCCAGCAAAGCTGGCGCAAAGGCTTCTATAAGCCCAGCGATGGCGGGCAGACAGTTTCCGGTGTAGTAAAAGCGAAGCA -17/19 Test #6: test_rawrgrgr_r10_call ........... Passed 16.89 sec +16/19 Test #19: test_version ..................... Passed 0.03 sec +6: scrappie: No basecall returned for /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 10: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 to /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa -- score 11581.230469 over 12818 blocks (0.903513 per block) 10: block pos 10: 0 -1 @@ -202678,24 +202709,29 @@ 10: 12815 -1 10: 12816 -1 10: 12817 -1 -18/19 Test #10: test_seqmappy .................... Passed 6.21 sec +17/19 Test #10: test_seqmappy .................... Passed 5.42 sec +6: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.914597, "nblock" : 16158, "sequence_length" : 31, "blocks_per_base" : 521.225806, "nsample" : 81106, "trim" : [ 200, 80990 ] } +6: TCTGGTTTTTTATTATGTTTTATCTTCCATA +6: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.972209, "nblock" : 5778, "sequence_length" : 3087, "blocks_per_base" : 1.871720, "nsample" : 29150, "trim" : [ 200, 29090 ] } +6: GCTTCAGCATCTGCTGGGTCTTGTCTGCACATCGACAATGATTTCTGCCACTTTCAGCTTTTCACCGAATGTTTTTAGCCTTTTTCAGCCATAACCGCGATACTTTTTCCGTCAACGATAGTGGACACTTCCATAAAATCAACAGCTGCGGGGAAATCGTTGGTTTGAATCATGTTTCAGCAGATAAGCGAGGAATTTATCGGGAACAGAGGTCGCAGATAGCGACAACGTCTCTATTCCTTTGACTTCGCTGATGGACCAATACCAGTCGACCGATACAACCAGAACCGTTGATACCAACTTTGCTCATGGTTTTTTCTGAAACGTTGGATGAAATTGATCCCTTTCGCTTGAACCGGGATGGCGGGAATGACAATCTCCATTCGCATAAAACGTAACGTCTGGAAACGGGTAAACAATATTTTAATTGAAATTCAGAAAAAGCCCGTTTTAACAGAAAATTATGTTGCAAGCCAGAAATATTCTGGAAAATAAATATCAAGGTTACAAAATCAGCGTCACTGGCTGGTCTTTTTACTGGTTATCGCAGCGTATTACGCGCAATGAATTGCGTGGTTTTGCCGCGTGCGCACGATCCAGCCACTGCATGAGCATCATTCTCGCGCTTTCCTCTGGCATCTCGATTTTTGTGCTGATGGTCATCGCCTCTTTTATGAGGCTGGATACCCGACCGCCAGTACCTCAACAGAACCGATGATGAGCGGGACTGGCGCGTTTGCGGAACGTGCGTGGTCGCCACCTCTATTGTTGCCGCTGCCGGTGACTGGTTTTGGTAACGGGCAACCCGTGGTTGCTGCTGGTTTGACGATGCCTTACGCTCAAGAGGCCGATTTTCGAACGGGTAAAGTCACTAAATACGTGGCATGGAAACGCTGGCGAATCTGGGATGTTCCTGTCATCAGGTTAGCGCTGCGCTGCGCCTGGCACGCCACTATTCTGGAAAGGCGAAAGGCCGCTTTTGCGCATGATGCGGCGTTTAAGCCATCCTGAAGGATATTTAAAGAAACGCCCTGTGGAATTCAAAGCCATAATTATAAAGGAGATACAGATCTGTCACGGAAACGCCTGTGCTGTACTGTGTGATGGATGAAACCGTAATCCTTGCCCGTTACGTCATCTGGCTTCTTGATCCGCATTACACCCGATCTTTAATACATCATAATATCAAAATAAACCAGCGTCTTAAGTAATTTTCAGGATCAAACATAAATCGATAAACCATGGAGGTTGCTACATGAAAAAACTGGCTTTATTCTGTTTACTCGGAAACGTTGTTTCCTTTTATCCCGATACCGGGCGAAACCCCGCTCTGGGTTCGAAAGGGGGATCTGGCGCTGTTGCGGCAGGCGGCAAATTCTTTTGTGGTGATATCATACGCTCATGCAGCCAAAAAAGACAACATCAACTAACTAAAATGTGAAAAGGGTGCCATAAAAAATGGATACTGGCGGTCAAATAGCGGGAGAAAATCCCCGCGCTGTACTGGACATGCAGGCCATGAGCGCAGCAACCTCCTTGTCACCAGCCCCGGAGCCGGCATCGTAGAGCGTTTGTCGGGTCAGGAATGTAAATGTCAGAATCGTGATGCGGATAATGACAGACACGCACCAGCAGTTCCACGCTCGTAGCTTTCTGTCCTTGCCGGATGGCGGGTAAGGCCTTCAATCCTGAACTGCTGGTTCCGTTCGTTGGCTTCGATTAATGCGAAAATGTCGGGGCCTTCAGTTTCTGATCACCGGTTAGCCTGGAAACGGAAAGTGCGATATCCCGCAGGGCGTTTTGTAAGGTTTTATTCAGGGGACAAGAAATGATCATTTCACGAAATTGCGTGCTGTCTTCCAGAATTTTTCCATCGTTCGGGTTAGCCAGTTTTAGCCATCGTACTCTCTTCATTTCCAATAGCATTAATTTTCTATGCAATAATGTTGCTGAAGCATGATAACAAAAGATTTTGGTCAGTGATAATTACCGTCAATGCCAAATCGTTATCAGGAGTGAACCTGGACGGCGAAAAACAACCAATAATGAATGGCACTCCTCGCAGCGATTGGTTGCCGCGCATCGCGTCGGGTTGGTTCGTTATTGCCTGCGTCTTCGGCGGTATTTTTGACTATTCGCGTAAGTCGGCCTGGCTGGCTATTTCCTCTGGCAGGCCGATCACGATCAGCGTGGTCTGCCAGAAATTAAAATTCGAACCGGGTTAAAAACATGCAATTGTTGCCATCAGCCCGGATGCGGCGTGATCAGCCCGGGGCTGCAAGTCGTGTTACGGAAATGGAAGCGATGAACCAAATATCGCGCAACCAGATCGAAATTAAACAGTGGCAGCAGGTTATCGTGCTGCGGAATGGGCCGGTGAAAACACCTGCTGGTGAAGCCCTCCGACGCTGAATTAAATCAACGCTTTCAGGCTTATATCGCGGGTATTGATCCTGTATTGAAATATGCCAAAACTGGCGTATGAAGGCGATATCAATCATGAAAGCTGACAGACCCGACCGCTGGATAATGCTTATACCCGATATTTTGAAGCAGATTCGTCAGTCTGGCGGCTACGAAACGACGGCTGGCGGAACTGTAACCATCAGCGCACCCGCCTGGGTCGAATGCCGTGATTGGCGCGTTTGTCTTTGCCCTGGTCCTGCCTGACACTGATAACCGTTGTAGTGCTGCATCCAGATCATCATTTCGTCACTAAGTATTGCCGCGCAACAGATGAAGATTCGCCAGGTGGCAGTGAATGATGAACCAGCAGGTCGTAATGAAATCATCTTTAAGTCATCAGTCAGCGAATGCGCATTCACTGGGGATGACGGTCAGGAGCTGTTCGACGGGCGCGGAAGAGATTTATCATGGCACCAGCGAACCTGCGCTGGCGATGCGGACCTGTTATCTCGCGCTGGAGAACAACACGGCTATCGAAGCGACTGCCGCGCATCAAAACAACCACTCGTAACGGAAAACGGAATGCGGATAGCGCGCGTCGTGCCAGCAAAGCTGGCGCAAAGGCTTCTATAAGCCCAGCGATGGCGGGCAGACAGTTTCCGGTGTAGTAAAAGCGAAGCA +18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 16.29 sec 7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.020645, "nblock" : 80790, "sequence_length" : 9342, "blocks_per_base" : 8.648041, "nsample" : 81106, "trim" : [ 200, 80990 ] } 7: CAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTAACCTGTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGGCTGAGGCAGGAGAATCCTTAAGCCAGGGCAGAGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAGAAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAAGAAATGTAGGCTATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTGGTGAGTATCTAATGAAAGCGTTCATTTAAGAATGTACAAGAAGCTATTTGTAGTAACTAGACCAGAGAAGACCTTGACAATATTTACTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGAAATAAATGCTATGCAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTAACAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTATTTCGCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGAAATCACTGCTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAGCCATATAATTACATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAAGTGTGTTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTTCACTTTTCATACAACTTTCTCACAAAGTTGATAAGTGTTTATTTTCTATTTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGGAAGTATCATTTCAGCTTTCCATCCATTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAGAAACGTTGTTGAAAACTTGAGGTAAGAATAAAATATTAAATATTTCTTTCTTTTAGTGTGTGTAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGTCTGCTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTACAATGCAATCATCAATAAGCTTAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCTAGCCATTGCTGCTTTAAGTTTTTCATTCTATTGTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCACTTGGCAGCTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTGAGTGCTTTCTCCATCTGCAAAGTTGGCTCATGGTGCTCTGCAATTACATAGTGCGTAGTAAGCACTCAATGTAGCTGCTGTATTGATGAGTATTGCCATACTCACGCTCATATCTAAACCAGAGATGGCAGTCTTTCTTTAAGGGCCGGATAACGAACATTTTGTGCTTGTGGACCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAGAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAGCAACAGTATGTGCAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGGGGATGCGTTTAGGATAGCATACTGAACTAGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTGTACTCACTCTTCCTGTTGCTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTTATACTCTACAAGGTCTTTCCTGATCCTCTGAGCTGTATCAGATGCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAATTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTAGATTTCAATTTATTAAGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTAAAAACACATATGCCTGGGCCTATATGCTGGACTTCAGAGATCTGAGTGTACAAGGTCTTGGTCAGGCATTTGCATTTAGAACCCCCTGAATGAAGTGCCCCAAAATATATGTTGAATAAAGCAATAAAACCCAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTATCACACTGTAGTTTCTGCATTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGACTCAGACGAGGCACTTAGAATATGCTTTGGCTTTAAAAGTCATGGATGGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAGAAAGAAAAAGCCTCCTTATTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTATTATTTGTACCAGAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTAAATAGAGGGCCTAGTTTTTGTTTTGTTTTGTTTTTAAATGGGGTCTTGCTCTGTGTGCCCAGGTTGGAGTGCAGTGTTATGGTCACTTAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTGTAGATGTGCACCACTTAGGCTAATGTCTAATTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGACTGATCTTGTGAACTCCAGGTCAAATAGTCCACACTCCCACCCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCCTTATGCCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTGACTTAGTAAACGTTTAATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAATATGCTTGATTTCTTTTCTTTTTTTAATAGTGACAGAGGTCTCTTGCTATACCTGTTGCCCAGGCTGGTCTAGAACTCCTGACCCAAAGCGGGATTACAGACATGATGATCCACCATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCCTCCAGGCCTGGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGGTTAGCCTTAGAGAGGGCTGTCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCCGTGGCTTCTCCATCCAGAGACAAATAAGAGAGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGATTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTAGTATGTTTTCTTCTTTACTTACAGTGTTTTGGTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTAAATAACCTGTGAAGCATTTAATGACTTTGTTCCTTGTTTAAACAAGTAAAAACCACAGCTAGTAATCTTAAAGATCGGAGCTGTATATATGTAAATATTCCGTTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGAAGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCCAATACAGCTTCATGAATTATTAGCATTGCGAGACAGACCTAAATGAATCAGGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAGAAAACTATACTGGAAGCACTTCATTTAATTTCTTAGGAGTGGATAGGAGATAAGTAAGACTTTAGAGTAACAAATATGCCTGTGGACACTCTGAAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAAGAACTGGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGTAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTAAGCATGGGAACCACCCCAAGATTCATTTGCCACCTCCCACCTGGTCTCTCCCTTACCCGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACCACACACCATTCCACTTGGCCTCTCCCAAATCTCATGTCGGTTTACTCACATTCCCAAAGTCAACTGTGGCTTCCCAATGGTCCCCAAAGTCTTGCTCATTCCAGCTTAATTAGCCCAGAAGTCCAAGTCCAAAGTACTCATCTGAGATAAGGCCAAAGTCCCTTCCATCTATGAGCCTATAAAATCAAAGAAGTAAGTTAGATTACTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCAAACAAAGGGGCTGTAGGCCCCAGAAAGTCTGCAATCAATAAGGCAGTCATTAAGCTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACATCCAGCCCACTGATGCAGAGTGGGCTCCCACAGCCTCATGCAGCTCGACCTCTGTGGCTCCATGCCTCACATCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTAACCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCACCATTCTGGGGGTCTGGAGGATGGTGGCCCTCTTCTCATGGCTCCCACTAGGCGGTGCCCCGAGTGGGGACTGTAGGGGTCCAACTGCCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCGCAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTTGCTGCAATGCTGTTACATGTAAGCCGCCAAGGCTTGGGGCTTGCACTCTCCTGGAAGCCCTGGGCTATACGCTGGCCCCTTACAGCCATGAGTGGGGATGCCAGGACGCAAGTTCCCGAGACTGCCAAAGCAGCAAGGCCCTGGCCACAAAACCATTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACCTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAATGGGTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTAAATGCTGGTTCAGTTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGCAGAGGCAAGAATGTACCCTTCTCTTTGCTAGAGCATAAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAATTTGCAAGCTTTCCACTTCTTCTGTCTTCTGAGCCTCCATCCTGTTCCAACACTGCCTATTACTCCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAAGACATTTATTTCTCACAGTTGGCTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCTGGCAAGGGCTTTCTTGCTGCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAAACAGAATTGGCAGAATCCTTTTATAATAAAGCCATTCTCAATAACCCACTCCCTTGGTAACAATATTGAATTATTCATTCATGAGGACAGAGCCCTTATATGGCTTAATCATCTTTTAATGCAACCTACTCTTCCAATACTGCCACACTACAGGATTAAGTTTCCAACACATGAACTTTGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAATTGGTAAGAAATAATGTGGTACTTTCTCCCACAACTTAATCAATGGATTGTAGGTGTAAAGTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCGAGTAAGCTCAGTGTTTTCATAGTAAAATCAGTTGGTGATTTGTTAGCATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCACATTTCCATCTTCTGGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACGTAGTCCTCACTTAACATCTCAGTAGATTCTTGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATGTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTGTTCACTGTGAATGTCATGGCCCAATAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATATTATCACCAGATGGGAAACAGGGTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAATATATTCACCGTATTCATAAAGGAATAAAAGATTTAGTTTAGACAAAACAATGCTATTCAATATATTCAGTTAATGTGGTATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAGAATTACTGTGGTGCTTAAAGGCTTTGACTCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGGAAGAGGTATAGAGAGGACAGGATAATAAGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGATGTCTACTCATTTCCCCTGTTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCATACTCATCACTATTTCCTGTTGCTGCTCTAGAGACTCTGCATCTGGTATCCAGGAGTTGGTATTGTCTTCATCTTGCCTTTTCAGTGTAAATCACCCTGTTTTTCCTCCTTATGCCCAGTAATAGGTGATCGTACATCCCTTCACAACAATTAGGACTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAGCTGAACTGGAAAGAGAATTGCTTTTGACATTTCTGCAAACATGTGATTCTTTTTAAATGTATTTCATTTGCAAGAGGAAATCTGGCAAAAGCATTTCTCATTTTTATGTAAGTGTTTATCTGATAAAGGGGAAGTTTAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCGGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCACCAGCAAATTGACCAGCAATACGTGATA 7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.012573, "nblock" : 64090, "sequence_length" : 4696, "blocks_per_base" : 13.647785, "nsample" : 64395, "trim" : [ 200, 64290 ] } 7: GGTATTGCTTCGTTCAGTTACGTGTTGCTCTTGCCTACATCGCTCTATCTTCAGCGTCTGCTTGGTGACATACCCATGAAACTATAATTTTTTAACAATTGGAAATTCTTCAGTTTTTATGTACAACAATTTTATTTTCTAACTGTGAAAATATATGGACATCTGATTAGTTTTGTATATATTTGGCATATTGTTTAGCAATATTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCGTATGTAATCATGCGGTGTGAATAATGACGGTTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTTGCTTTATTGTCCCTGCTTGGCTAGATATTCTTACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTAATTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTTCTTTACTGGTGATTTTGACATTTTGTTGTCTCATCACCTGAGCAGTATTGCACTGTATCCAGTGTTGGCAGTCTTTTATCCCTTATCCTCCTCTGTTCCCCCAGAACCCTCAAGTCCGTTAACATCATTTATGCCTTTGCATCTCATAATTATACTGATGAAGAGATGATGTTTGGACCATTCCTGGAGGTTACTTCACTTAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTCTTTATTCACTCTTTGATTGATGGGCATTTGGGCTGGTTTCATATTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTACCTAGCATATACGATACGTATCTATTTCGTATAATGACTTCTTCTGGGCCAAAGGAGTAGGTCTAAGATCTACTTTTAGTTCTTTAAGGAATCTCCACACCATTTCACATTGTGGTTATACTAGTTTACATTCCCATCAAACATTCTTAAATTGTTTCCTTTTCACCAGTCACACCAACATCTATTAGTTTTGATTTTATTAGGGGCCATTCTTTCAGGAGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATAGTACAGGCCATTTGTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAGGTTTTCTCCATCATGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCTAAGCTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCGAAGTCTTTGCCTAACCCAATGTCTAGAGGTTTTTCAACGTTATCTTCTAGAATTTTTATAGGGTTCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTCAGGGATCAGTTTCATTCTTCGACATGCTTGGGTTTACCGAATTATTCAGTGTCATTTGTTGATAGGATATCCTTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCAGTTAACATAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGGTATAGTTTGAAGTCAAGTAATGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGGGAATTGCATTGGAATTTGTGGGTGCTTTTGGCAGTATGGTCATTTTCACAATATTGATTTTACTCATCCATGAGAATGGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAATATATATATATATATATTTGCAGCTATTAATAAAGGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGTATACTTAGGGCTACTGATTTGTGTACATTAATTTGTAATCCTGAAACTTTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTAGGGTTTCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCCTGGCTAGGACTTCAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCCTTGTCTTTGTTCGATCGCACGGGAAGTAACAACTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTGTCACAGGTGGTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGGACTTTAATCATAAAGGGATGCTGGATTTTTGTCAAATATTTTTCTGTGTTTATTGGGATGATCATGTGGTTCTTGTTTTTAATTCTGTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGAGTTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTGTTATGTGTCCTTTCCTGGTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAGATTCAGCTGTGAATCCGTCTGGTCCTGGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTAGGCTTATTTGGATCTTCTCTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAATAACCAGCTTTTTGTTTTATCTTGTATGTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTCTTTTTCTGCTGGGTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGTGTGACCTTAGATTGTCTATTTGTGCTTTTCAGACTTTAGATGTAGGTATTTAATGTTATCAGTTTCTATGTAGGTATAATGCTATGGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCGGTTTTGATAGGTTGTGTCACTACTATTGTTCAGTTGAAAGAATTTTTACATTTCTATCCTGATTTCATTGTTCACCCAATGATTTTTCAGGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTGAAGATTTCTTTTTGGGGGTTGATTTCCAATCTTATTCCCTATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTATATGTTCTATATTGGAGAATGTTCCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTAGGTGAATGTTCTCCACATATCACTGTAAATCCGTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTAGGGCTCCAGTATTAGGCACTTACATGTTTAGGATTGTGATATTTTCCTAGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTGTGTCCATTTATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTGGAGGCTGAGTCTAGTGAGACGGTAGATACTTGGTTAGTGGTATCCATTCTGCCATTCTGTATCTTTTAAATTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTAAATCATTGCATTATTGTTTATAAGATCCTGTGAGAGGTTAAACGCAAGCAGACGCCGAAGATG 7: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.041418, "nblock" : 28890, "sequence_length" : 2268, "blocks_per_base" : 12.738095, "nsample" : 29150, "trim" : [ 200, 29090 ] } 7: CGGTGCGCATTCAGCCAGCCCTACCTCATTCACCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTACGCCCTTCCGCCGAATCGCCTTCACAAAGCCTTGTTAGTCCCACATGGCCAGTGGCCGGATTGTCGGCTCCGTTTCGGAATGGACGTGGATCTAGTGTGATTGTTGGGAGCGGATGGAAAATCAGCGTGCCTCTCCACCAATCGATCATCGGGTGGTGCGGTGGATGATCGTTACTCGCCAATACAGATGAGAATCCGTTGATTTTGCAGCTCGATTGGGATCGGATGGTGCATTAATAGACCGGGTATCTGAACGGTGATGAATGGGAGAGACAGTGGAACCGGCATTAGGCGGGATAATGGGCGGTTGGAAGAAATGGAATGATACGGCTCATTCAATTTCACTTCATTCACCGTCATGATGAATGGTGTCGCATATCGCTTTGATGGCATCAGTATAATTCCGCCTTCTACCGATATCGAATCCAATAATTAGTAGGTGACTCAGCTGGATCAGGATTTGACGTCGCGGGTGGATGGGATGGGGTTTCGGATATTTGGAATGTCATTAGCCACCTCGGCTGCAGTGTCGTTTCGGTGATGGTGGTGGGGGGTGTGAAATCACCTTCGTCTCGTTGCGCCGGGAGAGGCGTTCAGATGGGGGTGGAAACGGGATCTGGGTATCGGACGAAAGGAGTGGATCAGCATGCATCGATTAGGCTGCATTTCCGCTCGACATGAAACGGATGACTAGCGTAGATCATTGGTGATGGGTGTGGGAGGGTGACATCAGATGGACTTGTAGTCTGGGATTTGGGTCCTAAAGTGGGATGACATACTCTGCATATCGTCGGTGGATCCGCTTGTGCGTGTCTGCTGTCAGAGATTTCGTGCGTTCAATGCGGTAATGGATGGATAAATGGTGGATGGTGGTTCGTTGGCGTGGAGCGGGACCTTTCACTGGGATGATACCTCCGGTGCGGTTGAACCTCGGTGGGTGCGATTCTGCGGTGGATTCTCTCGTCGTGCGGGTAATAATGATTTCGACTGGAATCGGAGGTGTGGAGTGGGTTTTGGTGCCGGATGGGTGGAATTCTCTCGTTGGCGTAGATGAGTGCGCTCTGCCGGTTTGGATGGTCATTGGAAATGTGCATGATGGGGATCAGGATGGATGGTCGGTGTGGGCCCTGTGCTTCATGAGTCGGTGGAAGACGATCGGATCAATTGTTGTCATTTCAGTCAAATGGAATAATTTGAGAATTTAAATTCCCAATTGAATTAGCCTGGATGGACAGGTAGAAAGCCTATGAAAAGCCCATGAAGTGGATGACTGGATCAGTCCTACCAGAATCGTATTAGTATTTCATTATGTCCTTCCACTAATAGATATTATTGATTATCTCCGATAAAATATATGAATGGGTGTGGATTTGTCATAAATCATTGTATCCGTTATTATAAGGAAATCGTTTGGTTGAGGGTGTCGTTGGCTCACTTGTACTTAGTATTCGTATATTAGTCATTTCCCTTTATCATCCCCAGTGTATACAATCTTAGCATCATCGTAATTTCGTTCATTCACCCACATTTTTGATGGCGTAAATCTCATAGAATAGATGGGTTGGGATTTCAGATGTCTGCATGGCCCGGTCAGTATGATGAACGGAGTATCAGATCATGAATCGGATGGTGGATGGGTCGGCCGATTAGATGGTTGTATTATCTCCCAAGAATGGACGTGGAGTGACAAATGGTAAGATGCAAGATGGATTGATACCAGCTTCATCAATCTAATTTTTATAGAATAAGAAAGTCGATCTGGGTGCCGACCGTGAACAGATTTGGAACGCTTGTCAGCCTTACTTATTCTCCAGATAGTGTATAGGTGAATGGTACAGGATAGAATATATGTGCCAGCTCAATCAGATCGTAAATCGTTATTCTTCAAATATAGTCTTAGTCATATTTACTCATCTGACCGAAATCAGATATCTTCAATATAGCGGCAAGTGGATAATGACAGTGTAGATGGTGGATGATAATGGAATGTTACTATCAATGGCGAATGAACCTTTCGAGAAATGGTAGAGCTAGTAGGTGGGAGAATTTGGCCTCCGTACCAGATAAATTTCAAATAAATTCATCATGGGCGGCTGGTGAACGCATCAGTGGAAAAACATATGGATGGATGGGATCGTATCGATGGTGAGCTATCAGCGAATCAGTGGCATTTCCAATCTCATGGGCGGGTGAAGGT -19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 60.97 sec +19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 64.08 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 66.90 sec +Total Test time (real) = 75.51 sec make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse3' - rm -fr -- /tmp/dh-xdg-rundir-RGOmoFn8 - cd build_sse2 && make -j6 test ARGS\+=--verbose ARGS\+=-j6 + rm -fr -- /tmp/dh-xdg-rundir-8MSP8VI3 + cd build_sse2 && make -j5 test ARGS\+=--verbose ARGS\+=-j5 make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_sse2' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j6 +/usr/bin/ctest --force-new-ctest-process --verbose -j5 UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/build_sse2/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/build_sse2/DartConfiguration.tcl Test project /build/reproducible-path/scrappie-1.4.2/build_sse2 @@ -202735,12 +202771,6 @@ 5: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "raw" "--model" "rgrgr_r941" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" 5: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 5: Test timeout computed to be: 10000000 -test 6 - Start 6: test_rawrgrgr_r10_call - -6: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "raw" "--model" "rgrgr_r10" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" -6: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 -6: Test timeout computed to be: 10000000 1: 1: 1: CUnit - A unit testing framework for C - Version 2.1-3 @@ -202887,16 +202917,15 @@ 1: passed 1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed -3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.325922, "nblock" : 16158, "sequence_length" : 9258, "blocks_per_base" : 1.745301, "nsample" : 81106, "trim" : [ 200, 80990 ] } 1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi ...vit = -109.542824 vitB = -109.542824 1: passed 1: Test: Test mapping -- Viterbi with relaxed band2 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 1: passed +3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.325922, "nblock" : 16158, "sequence_length" : 9258, "blocks_per_base" : 1.745301, "nsample" : 81106, "trim" : [ 200, 80990 ] } 1: Test: Test mapping -- Viterbi with relaxed band3 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 1: passed 1: Test: Test mapping -- Viterbi with relaxed band4 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 1: passed -4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.295786, "nblock" : 16158, "sequence_length" : 9512, "blocks_per_base" : 1.698696, "nsample" : 81106, "trim" : [ 200, 80990 ] } 1: Test: Test mapping -- Viterbi with relaxed band5 equals Viterbi, local pen ...vit = -109.118820 vitB = -109.118820 1: passed 1: Suite: Functions on scrappie matrices @@ -203121,22 +203150,37 @@ 1: tests 71 71 71 0 0 1: asserts 506 506 506 0 n/a 1: -1: Elapsed time = 3.852 seconds - 1/19 Test #1: unittest ......................... Passed 5.35 sec -test 7 - Start 7: test_rawrnnrf_r94_call +1: Elapsed time = 5.034 seconds + 1/19 Test #1: unittest ......................... Passed 5.58 sec +test 6 + Start 6: test_rawrgrgr_r10_call -7: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "raw" "--model" "rnnrf_r94" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" -7: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 -7: Test timeout computed to be: 10000000 +6: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "raw" "--model" "rgrgr_r10" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" +6: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 +6: Test timeout computed to be: 10000000 +4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.295786, "nblock" : 16158, "sequence_length" : 9512, "blocks_per_base" : 1.698696, "nsample" : 81106, "trim" : [ 200, 80990 ] } 5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.278788, "nblock" : 16158, "sequence_length" : 9559, "blocks_per_base" : 1.690344, "nsample" : 81106, "trim" : [ 200, 80990 ] } 2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.273149, "nevent" : 16119, "sequence_length" : 9414, "events_per_base" : 1.712237 } 3: GCAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTATGTCTTAACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCAACTACTCTCCGGGAGACTGAGGCAGGAGAATCCTTAAACCCGGGGCAGGGTTGAAGTGAGCCGAGGTCTCACCTCATTGCACTCCAGCCTATGGGTGACAGGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAAATCAGTTTCCCGTAATTATTTTAGAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTAGTAGGTATCTAATAGAAAGCGTTCATTTAAGGAATAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATGTATTCTGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTTTATTTCCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAAGAAGGTAATATAAAAATGGAGTATGAACAAAATTGAAATCCTTTGCTATGAAGTTGAAAATACTAGTTTGTACATGTAAGCCTGTACGATAATAAAAATATAAATATATAATTTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTAGTTGAATATTTCACTTTTCACGTACAACTTTCTCACAAAGTTGATAGTGTTTATTTCTATTTTTGTATGTGCAGCCTCATATTATTTGTCTTTTCTCGTTAGAGTATCATTTCAACTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAACACAAACGTTGTTGAAACTTGAGGTAGAATAAAATATTAAATATTTCTTTGCCTTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCTGGAAATGCAAAATTAGAACATGCCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTTTCCTCATCTTCCCTCATTTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTAGCAAGTTTTTCATTCATTGTTTTTTTTCCATGTATTTCTGTAAGCCTCTTGTTGCAATCTTCACCTTGGCGTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGGTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTTTTCTGCAGTACATAGTGCGTAATGGCCTCAATGGTAGCTACTGTATTGATGGAAGTATTGCCATACTCCCTTCATATCTAAACCAGAGATGGTGATCTTTCTTAAGGGCCGGATAACGAACATTTTTGTGCTTATGGACCACGTAGTTTCTGTCTCACCTGGCCCGGCTCTACTGTATTGTAGAAGCAGCCATGGGCGTCTCTATGTGAATGGGCGTGACTGTGTTTTCAAAAGCAACAGTATGTGCAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTGGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCGCTCTTCCTGTTGCTTTGGCAATGCTTATTTATTTTTGCCAGGTTTTCTTCCTTATACTCTACAAAGGTCTTTCTGATCCTCTGAGCTGTATCAGATGCCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTATGTTTCCCTGACTTTGGGTGTGAGTTCTTGAAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTATTAGGTTGTAGATTTCGAGCTTTTGATCTCAAAGATCAGCTGTGCATTTAAAAAACACATATGCCTGGGCCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCTAGATAAGAAGTGCCCCCAAAATATATATTGAATAAAAAGCAATAAAACAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTATTTACTAACTTCTGATACAGACTCAGACAGGCACTTAGAATAACTGCCTTTAAAAGTCATGGATGTTCAAATGCCGTAATGGAACACTATTCACCAACAGAGATGTTGTGGACTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAAAGTGAGTTAGCAAATGCTGTTAGAAACTGTCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACAGTTCCATTAGTATTTGTGCCAAGTGCCACAAGTTATCTTCCTCAAGAATGAATCTGCTTTTGTGATCTTATTTGAGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTAAGGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGCTTCTAGTTTTTTTGTTTGTTTGTTGTTTTTAAATGGGGTCTTGCTCTGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGGTCTCACTGTGTTTCCCAGGCTGATCTTGTGAACTCCGGTCCGTAGTCACGCCCACCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCTTATGCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTCTTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCTATACTGTTGCCCAGGCGGTCCTAGACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATCCTATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGACCATAGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTGTAGCCTTAGAGAGGGCTGTCCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTGAGGGCCACTGAGGGTCATGGTGGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGAGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTCTTCTTTACTTACAGTGTTTTTGGTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACGGCGTGAGGGCTGCTTTTGGAACAAATTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTGAAACATTTAATGACTTTGTTCTTGTTTAAATAAGTAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATTGTAAATATTTCATTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATATTCCTTATCAAGGAAGCTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATATGATAAGTGATTGTCACCAGATGCAAAATATTGACTGTGTGTCAATACAGCTTCATGAAATTATTAACATTGCCTTGAGACAGACCTAAATGAATCAAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCCAGATAGAGATTATATAGAAGTAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTAGAAACACTTCATTTTAATTTCTTAGGGAGTGGATAGGAAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAAGACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTTTGCAACATGGGAACCACCCCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGAACGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAATCTCATGTCGGTTCCCTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTCCAGCAATTAGCCCAAAGTCCAAGTCCAAAGTCTCATCTGAGATAAAGGCCAAGATCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAAGGGCTGTAGGCCCCAAAGTCTGCAATCCAACTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCGCATCCAGCCCACTGATGCAAGTGGGCTCCCCACAACCTCATGCGAAAAGCTCTCGACCTCTGGCTCCATGCCTCATCCAGCCCACTGATGCAAGAGTGGGCTCCAGCAATCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTACCTCTCTGCTGTTTTCACAGGCTGGCGTTGGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCTGCCATTCTGGGGTCTGGAGGATGGTGGCCCTCTTCTCATAGCTCCCACTAGGCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCATAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCAGGCATTTCTATACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTGCTGTGCACCACATGTAAGCCGCCAAGGCTTAGAACTTACACTCTCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCAAGCAGCAAGGCCCTGGCCCACAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATAGGCTGCCACGTGAAGACCTTGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAAATGGGTTTTTTCTTTCTACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGGAATCAGCCAGGTCACCTGTTGAGATGCTTTGCTGTAGAAATTTCTTCCACAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAACAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCAACCATCTAACAAGTCTCTAGGAAATTTGCAAACTTTCCACTTCTTCCTGTCTTCTAGGCCCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCGAACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGTGGAGGTTAGGAAGTCAAGGTTGAGGTCCCTACATCTAGCAAGGGCTTTCTTGCTGCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAAACAAGTGTAGAGATCCTTTTATAATAAAACCATTCTCAATAACCCCTCCTTAGTAACAATGAATTATTCATTCATGGGGATAGAGCCCTTATGTGAAGCAATCATCTTTTAATGCAGCTTCTCTTCCAATACTGCCACTACAGGATTAAGTTTCCAACATGAACTTTGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCGCCGTTACAAATTAGTGAAATAATGTAGTACTTTCTCCCACAACTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTATATTTGTTAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTCTCTGTAATTATAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACAGTAGTCCTCATAACATCTCAGTAGATTCTTGGAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTATTCTGTAGATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATTATCACCAGATGAGGAGAAACAGGGTTTTGCTTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCATATTCACCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGGTGCATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTGTAAAGTATTGACAGTAATATTATAATAAAATGTCATCACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTGCCCAAGGCTTTGACTCTAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGGTATAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCCGCGCCTCATCCTATTTTCCTGTTGCTTGCTCTAGAACTCACCATCTGGTATCCAGAGTTAGGTATTGTCTTCATATTGCCTTTTCAGTGTAGAATCACCCTGTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCGGCCATCCCTTCACAACAATTAGGACTTTCACCGTTTTTAGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAGTGCTGACATTTCTGCAAACATGTGATTTTTTAAATGTATTTCATTGCAAGAATCTGGCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGAAGTTTAAAATATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTAACCAGCAATACGTAGT 3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.319873, "nblock" : 12818, "sequence_length" : 4612, "blocks_per_base" : 2.779271, "nsample" : 64395, "trim" : [ 200, 64290 ] } +5: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAAGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCCATGGTTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGCTTAATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTATTTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCACATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCCAAAATATATATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCAGCTTGTTTAAACAAATGAAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTTTGCAAGCATGGGGAACCACCCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGAGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGACCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTGTTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGAGGCCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC +5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } +4: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCATGGTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGTATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTCACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCAAAATATATATTGAATAAAACAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTAATGTGTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCGCTTGTTTAAACAAATGAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTGCAAGCATGGGGAACCACCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGGGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGTTCCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC +4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.179309, "nblock" : 12818, "sequence_length" : 4723, "blocks_per_base" : 2.713953, "nsample" : 64395, "trim" : [ 200, 64290 ] } 3: CTTCCGTTCGAGTTACGTGTTATCTTTGCCTGCAATCCATCTATCTTCGGCGTCTGCTTGGGTGACATACCCATGGAAACTATAATTTTTTTAACAATTGGAAATTCTTCAGTTTTTATATTTAACAGTTTTTGATTTTCTAACTGTGAAAATATATGGACCTGATTAGTTTTGTATATTTGCGCAATATTGGCTAACAATATTTTTCTGAATTTACTTACTAATTCTCCAGCATAGATTCTTATGGGACTGTCATATATTAATCATGCGATTATGAATATGTGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTGCTTTATTGTCCTGGCTGGAATATTTCGCACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTTAGTATTTCAACAGGTTTTTGGGAACTGGTGATGTTTGATTACATGGAATCACGGTTCTTTACTGGTGATTTGACATTTTGTTACCATCACCTGAACTTGGTATTATCCAGTGATTGTAGTCTTTTATCCATATCCTCCTCACCCGTTTCCCCAGTCCTCAAGTCCGTTAGCATCATTTGCCACCTTTTGCATCCTCATACTGATGAAGATGATGTTTGTTTCATTCCTGAGTTACTTCGCGAATGTGATCTCCATTCCATTCAAATTGCTGAAAATGCATTATTTCGTTCCTTTTTGTGGCTGGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTGATGGGCATTTGACTGGTTTTCATATTTTTTCCAATTGCAAATTGGTGCTGCTATAAACGCCATTTTGGCACTGTACATTACGTATCTATTTCGTATAATGGCTTCTTCTGGGCCAAGGTAGGTCTAAGATCTGCTTTTAGTTCTTTAAAGATCTCCTTTACGGCTAATGGTTATACTGGATTTACATTCCATCAACATTGTTAGGTGTTTTCCTTTTCACCAGTCACAACATCTGTGTTTTGATTTTTTTATTAGGGGCCATTCTTTCAGGGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTTTAATAGGTTTGAGGCCATTTATATCTTCTTTGAAATTGTCTATTCATGTCCTTAACTTTTTGATAGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAATTTTCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTAGTTGGGTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCAGAAGTCTTTTACTAACCCAATGTCGAGGTTTTTTTCAACGTTATCTTCTAGAATTTTTTTACCGGGTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTGGATCCAGTTTCATTCTTCGACATGGCAGGTTTGAGTGATGTCATTTGTTGGTCGGGTCCTTTCCCCACTTCATATTTTGTTTGTTTGTTGAGATCTTGAGATTGGCTGTACGTGTTTAGCTTTATCTCTTGGTTCTCTATTCTCTTCATTGGTCTTATGCCTGTTTTTTATACCAGTACCATGCTGTTTTTGCTGATGGTGGCCATTATAGTTTGAAGTCAAATGTAATTACCTCAATTTGTTCTTTACTTAATCTTTACTTTGGCTGGGGCCTCTTTTTGGTTCCATACCGATTTTAGGATTGTTTTTCTCATTCTGTAGAATATTAGGTAGTATTTTTGATGAGTGCATTAGATTTGTAGGTACTTTTGGCGTATATGGTCATTTCTATGTGATTTACTCATCATGAGAATGGATGTATTTCCATTTGTTGTGTATGATTTCTTTTTTTCAGCAGTGTTTTGTTGTTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAGTATAGTCAAATATATATATATATATATATATTTACGCTAATATAAAGTTGGGGATTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGGCTATAGCGGGCTACTGATTTGTGTACATTAATTTTGTATCTAGGCTTTGCTGGAATTCATTTTAACAGTTCAGGAACTTTTAGTTTGGAGTCTTTTGGGTTTCTAGGTATACGATCATATCATCAGCAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTACTCTGGCTGGGACTTTATGTTGAAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCCGCACGGGAAATGCTTTCTTTTTCCATTAAATGTCTAATGTTGTTGGCTGTAGGTTTTGTATCACAGGTGGTTTTTATTACCTTAAACGCCTTCTACGTAGATTTTACTGGGGACTTTAATCATAAAAGGATTACTGGATTTTTTTTGTCAAATATTTTTTTCTGTGTTTGTAGAGATGATCATGTGATTCTTATTTTTAATTCTGTTTTTATATTTATATCATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCCTAGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTAATACGTGGATTTGGATTCAGTTAGCTAAGTATTTTTATTGAGATTTTTGCATCGTTAATCAGTGATGGGTCTCAGTTTTATTTTTTTGTTATAATGTCCTTTCCTGGTTTTGATATTACAGTGATGCAGCTTCATTGGATGATTTAGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGGATTGGTACCAATTTTTCTTTGAATACCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAAACTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGTTGTATCTTTCAAGAATTTATCTCCTCTGAGTTTTTCGTTTATATTACGCCCACAGAGTGTCATAGTAGCCTCCGTGATCTTTTGTATTTCTGTATGCTGAATTTGTAATATCTCCCATTTCATTTTAAGTAAACTTATTTGGATCTTCTCTTTTTTTTTTTTCTTGGTTAATCTTACTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTGTTTATCTTTTTTTTTTTTTGTATATTTTTGTTTCAATTCCGGCTTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTCTGCTGGGTTTAGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGTGTGACCTTAGATTGTCTATTTATTACTTTTTCAGGGCTTTAGATGTAGGTTAATATTCTCGATTTCTATTATGTAGGTATAATGCTATAGAGATTCCTATTCTGGTGTATTTCGAGATTTGTTTTCAGATTTGGGGAGCTCCTTTGCTTGGTTTTGTAGTACTCAGTATTTGTCTGAAAAATACTATCTTCCTTCATTTATAAACTTAGTTTCCTGGATACAAATTCTTGGCTATTTGTTTAGTTTAAAGACTACCGGTAGGACCCCAATCCACTTGTCTTTGCTGTATCCCAGTTTTGATAGGTTGTGTCCTACTATTGTTCAGTTGAGATTTTTTATTTCTATCTGGTTCATTGTTCACCCAATGATTTTTTCAGGATTGTTAATTTGATGTATTTGCAATGTCTTTGAAATTTCTTTTAGAGGTTGGTTCAATCTTAATTCCTATAGTCTGACATAGTACTTGTCATTTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTAGCCTATATATATTTCTATATTAGAGGAATGTTCCATGTGCTGATGAATAAGTCTTATGTTTATTTGTTATTGCGTCTTCTCCCTTATCCCTGTAAATCCGTTGTTGTAAGGAGTGTAGTTTAAAGTACATTGTTTTTCTTTGTTAACTTTTCTATCTTGATGATCTGTATCTAGTGCTGTCATTAGATGCTAAGTCCCTATTGCTGTGTTACCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTGGGGCGCTCAGTATTAGGCACCCATGTTTAGGATTGTGATATTTTTCGTTCGTCCTTTTATCATTATAATGTCTCTCTTTGTATTTTTTACCGGCTGTTGCTTCGTTTGTTTTGTCTGATACAGAATAGTTATTCCTGCTTGCTTTTTAGTGTCCATTGCATGGGATATCTTTCTACCTTTACCGTATATGAGTCCTTAGTATTGGTGAGTCTAGTAGAGACAGTAGATACTTAGTTAGGTAATTCTCCATTCTGCCATTCTGTATCTTTTTAGGTGGAGCGTAGGCCATTTATTCAGTGTTAGTATTGAGATGGTACTATTCTATTCATCGCGATATTTGGTGCCTAGATACCTTGGTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGAGGATTAAACGCAAAAACGGAACGCCGAA 3: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.590575, "nblock" : 5778, "sequence_length" : 2399, "blocks_per_base" : 2.408504, "nsample" : 29150, "trim" : [ 200, 29090 ] } 3: TCGGTGCGCATTCAAGCCAACCCTACCTCCTTCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTCGCGCCCCTTCCGCTTGAATCGCCTTCACTAAGTATGTTGGTCCCACATGATAATTCGTAGATTGCATCGACTCCGTTTCCGAATGAACGTGGATCGGCATTTCAGTAGTAGGCTGGGGCGGATGGAAAAATCAGCGTGCCCTCTCCACAATCGATCATCCGTTTGTCGGCCGGTACGGTAGGACCAGTCGAACTACTCAACCATTACCTAGATGAGGAATCCGTTGATTTTGCATCGTTGGGATCAGTTGGTAAATTCAATAGAATAGTTGTCCTAGACAGGTTGATGGATGGGAGAACAAAGCGGGGCCATGGGCGGGATAATGGGCGGTTGGAAATGGGATACAGCTCCATTCAGCCCTACACTTCCATTCCTCGTATGCTACGATGAATCAGGCCATGCATATCGCTTTTATTGGCCATCAGTATAATTCCAGCCTACCGATATCGATCCATCCTAATTAAGTAGGTGGCTCTCAATGGATCAAGAGATTTAAACATCACAGGTAGGATGATCGTCAGGACTCAGACCTTCAGGAATAATCATGCGCCACCTCCTTTCACATGTCATTCAGTGTGGTATGGTAGGGTAAAATCACCTTCATTCGTACTTGCCTTCAGGCGATTTCAGATAGGTTTGAAACGAATCTGTTGGTATCGGACGAAAATTGGATCAACATACATCAGTAAACTGCATTCCGCTCGACATAGCTCTGGACTTTAGCATAGATACATTAGGCTGGCATGAATTGTGGGAGGAGCCCTCGGAATGGACTTGTCTGGGAGAATTTGAGATCCTAAAAGTGAGATGGCACTACTCTACTCCTCGTCGATGGATCCGCTTGTACAATACAATCCAATTTCTAGATGAATGAAATAGTAGGTGGTTGTGGGCCAGCATGGAGCAGGACCCTTCACTACAGCCACCTCCGATGCGGGGTTCATTGAGGTGCATTCTGCGTGCCTCTGTCGTGCAGGTACCTTAATAAGCCGGGAGGCATTTCAAAGCTGAATCAGGAGGTAAAAATGAGTAGGATTTTAAGCCGCCGAATGGGAAGAACATCCTCTCGTTACCGGCGCAGAATGCACTTCCTGCCGGCCAGGCCAGTCAAAATGTACGCCAGCCAGGAATCAGGAATAAAGACTCAGTCAGTGAACGGCGAGCCCGCGCTGTGCTTCCGCCACAGTGGTAGAAAAACGTCCAGGATCAAATTACGTATTTCAATTCCGTGGAACAATTTGAAAGGCTAAAGCCTAGTAAAATTCAACTGGACGGACAGAGCCCGGAAAAAGCCTCCCTACCCCACTTCAAAGCGGAATGAACGCGGGCTCAAACCCTACAAAATCGCGTATTAAGTAACATTTCGCCCGTACTACACTATCAATCAGCCATTACCTCCGTAAAATACCAAATAGGTGAGAAAATTTGCATCCGCCATCGTACAGCCATCAAATTAGCCCACTCAAAATGGAATTTTGGATGAAAAAGGTATCATTCGACTCACCCCCTTACTTAATATTACGCTGCTCGCGTAAATATTTCCCTTTATACCATCCCAATGCATGCCCAATGCTTAGCATCATGTATTTCGACTCAACACCCACCATGCGCGATGGCGTAAATATAGAAACCAGATACGAGATTTCAGGCATGCCACGCCAGCGGTCAGTATAAACCGGGCAAAATCAAATAGCCGCCAGGCTCCGGACGGTGAGGCGAGATACCGGGTAGATGGGCTGGCGCGCTACATACTCCCAGAAATAGGGCATGGAAGCGCTCCATCGGCGCGATACCAAGATGGGCCGGCACCACTTCACGCCAGCATCTAAATTTTGCCTCGATAAAAGAAATCGTCCCCGACGGTACCGACCCATGAACAGGCATTTTGTTGCCCCGTCGCGCTTGCCACCCATTCCAAAATAGGTGGCGCCAGTACGAAGCGGGCTGAGCTAAACGCGCGCACCGCTCAATGAATCGCATCATCAGCCTTCATCCTCGTACCAGATACCATGGCCTCCTCCACAGCCCGAAAATAGCAAATATCCCTTCAATATGCGCTGATGGGCTGGAAACAGTATGAATAGGCGGGCGGGCCAATGGAATGGCTATCAACAGCCAGCGAATGAACCGCTTCCAATAGGTAGAGCTAAATGCGCGGAGAAATTTGGCCTCCCGTACCGGCCAAACCTAATCAAAATTCTCCTTCGACGGGCAGCTACAGGCGAACAGCGCCAGTGAAAAACATGCGGAGCGGATGGGGTCCGTATCGCTTCGACGAAACTGCCTCCAGCAGGAAAATCAGCTGTCTCATGAAGCGGTGCGCATGAAA - 2/19 Test #3: test_raw_call .................... Passed 10.90 sec + 2/19 Test #3: test_raw_call .................... Passed 11.49 sec +test 7 + Start 7: test_rawrnnrf_r94_call + +7: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "raw" "--model" "rnnrf_r94" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" +7: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 +7: Test timeout computed to be: 10000000 +4: ATGAAACTATAATTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTATTTTCTAACTGTGAAAATATACTTGGACTGATTAGTTTTGTATATTTGCATATTATTTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAATTTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGAGATGATGTTTGGTTTTCATTCCTGGGGGTTACTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGCTGCTATAAACATATTTATTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } +4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG + 3/19 Test #4: test_rawrgrgr_r94_call ........... Passed 12.48 sec test 8 Start 8: test_event_table @@ -215542,19 +215586,23 @@ 8: 12394 64075 0.000000 0.000000 1072576662 8: 12395 64078 -2.000000 -0.000000 1073238564 8: 12396 64083 0.000000 -2.000000 1072952450 - 3/19 Test #8: test_event_table ................. Passed 0.21 sec + 4/19 Test #8: test_event_table ................. Passed 0.21 sec test 9 Start 9: test_mappy 9: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "mappy" "/build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa" "/build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5" 9: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 9: Test timeout computed to be: 10000000 -5: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAAGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCCATGGTTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGCTTAATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTATTTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCACATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCCAAAATATATATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCAGCTTGTTTAAACAAATGAAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTTTGCAAGCATGGGGAACCACCCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGAGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGACCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTGTTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGAGGCCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC -5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } -4: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCATGGTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGTATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTCACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCAAAATATATATTGAATAAAACAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTAATGTGTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCGCTTGTTTAAACAAATGAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTGCAAGCATGGGGAACCACCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGGGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGTTCCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC -4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.179309, "nblock" : 12818, "sequence_length" : 4723, "blocks_per_base" : 2.713953, "nsample" : 64395, "trim" : [ 200, 64290 ] } -2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTTTCTTCTTTACTTACAGTGTTTTGGTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGGGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA -2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175321, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } +5: ATGAAACTATAATTTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTTATTTTCTAACTGTGAAAATATACTTGGACCTGATTAGTTTTGTATATTTGCATATTGGCTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAAATTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATATACTGATGAAGAAGAGATGATGTTTGGTTTTCATTCTGGGGGTTGCTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTTATTTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAAAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCGCCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } +5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG + 5/19 Test #5: test_rawrgrgr_r941_call .......... Passed 12.70 sec +test 10 + Start 10: test_seqmappy + +10: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "seqmappy" "/build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa" "/build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5" +10: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 +10: Test timeout computed to be: 10000000 9: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 to /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa (score = nan) 9: idx signal pos base current sd dwell 9: 0 182.803436 0 C 0.041604 0.315691 0.652851 @@ -232269,6 +232317,8 @@ 9: 16709 -0.661001 0 C 0.041604 0.315691 0.652851 9: 16710 -0.809389 0 C 0.041604 0.315691 0.652851 9: 16711 -0.661001 0 C 0.041604 0.315691 0.652851 +2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTTTCTTCTTTACTTACAGTGTTTTGGTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGGGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA +2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175321, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } 9: 16712 -0.714960 0 C 0.041604 0.315691 0.652851 9: 16713 -0.620531 0 C 0.041604 0.315691 0.652851 9: 16714 -0.890328 0 C 0.041604 0.315691 0.652851 @@ -279952,17 +280002,7 @@ 9: 64392 59.267578 0 C 0.041604 0.315691 0.652851 9: 64393 58.711945 0 C 0.041604 0.315691 0.652851 9: 64394 57.415466 0 C 0.041604 0.315691 0.652851 - 4/19 Test #9: test_mappy ....................... Passed 1.29 sec -test 10 - Start 10: test_seqmappy - -10: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "seqmappy" "/build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa" "/build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5" -10: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 -10: Test timeout computed to be: 10000000 -4: ATGAAACTATAATTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTATTTTCTAACTGTGAAAATATACTTGGACTGATTAGTTTTGTATATTTGCATATTATTTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAATTTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGAGATGATGTTTGGTTTTCATTCCTGGGGGTTACTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGCTGCTATAAACATATTTATTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA -4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } -4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG - 5/19 Test #4: test_rawrgrgr_r94_call ........... Passed 13.52 sec + 6/19 Test #9: test_mappy ....................... Passed 0.50 sec test 11 Start 11: test_squiggle_r94 @@ -285108,137 +285148,13 @@ 11: 603 G -0.348534 0.163240 9.530728 11: 604 C 0.161046 0.266937 15.063374 11: 605 T 0.194787 0.502125 16.019983 -5: ATGAAACTATAATTTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTTATTTTCTAACTGTGAAAATATACTTGGACCTGATTAGTTTTGTATATTTGCATATTGGCTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAAATTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATATACTGATGAAGAAGAGATGATGTTTGGTTTTCATTCTGGGGGTTGCTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTTATTTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAAAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCGCCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA -5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } - 6/19 Test #11: test_squiggle_r94 ................ Passed 0.32 sec + 7/19 Test #11: test_squiggle_r94 ................ Passed 0.10 sec test 12 Start 12: test_squiggle_r10 12: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "squiggle" "--model" "squiggle_r10" "/build/reproducible-path/scrappie-1.4.2/reads/test_squiggles.fa" 12: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 12: Test timeout computed to be: 10000000 -5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG - 7/19 Test #5: test_rawrgrgr_r941_call .......... Passed 13.86 sec -test 13 - Start 13: test_licence - -13: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "license" -13: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 -13: Test timeout computed to be: 10000000 -13: This software is subject to the terms of the Mozilla Public -13: License, v. 2.0. If a copy of the MPL was not distributed with this -13: file, You can obtain one at http://mozilla.org/MPL/2.0/. -13: -13: (c) 2017 Oxford Nanopore Technologies Ltd. -13: -13: -13: -13: The vectorised math functions 'src/sse_mathfun.h' are from -13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is -13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. - 8/19 Test #13: test_licence ..................... Passed 0.05 sec -test 14 - Start 14: test_help - -14: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "help" -14: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 -14: Test timeout computed to be: 10000000 -14: Scrappie is a technology demonstrator for the Oxford Nanopore Technologies -14: Limited Research Algorithms group. -14: -14: Basic usage: -14: * scrappie events Base call from event based data. -14: * scrappie help Print general help or help about specific Scrappie command. -14: * scrappie licence Print licensing information. -14: * scrappie raw Base call directly from raw signal. -14: * scrappie version Print version information. -14: * scrappie squiggle Create approximate squiggle for sequence -14: * scrappie mappy Map signal to approximate squiggle -14: * scrappie seqmappy Map signal to sequence via basecall posteriors -14: * scrappie event_table Output table of events for read -14: -14: This project began life as a proof (bet) that a base caller could be written -14: in a low level language in under 8 hours. Some of the poor and just plain odd -14: design decisions, along with the lack of documentation, are a result of its -14: inception. In keeping with ONT's fish naming policy, the project was originally -14: called Crappie. -14: -14: Scrappie's purpose is to demonstrate the next generation of base calling and, as -14: such, may change drastically between releases and breaks backwards -14: compatibility. Newer versions may drop support of current features or change their -14: behaviour. - 9/19 Test #14: test_help ........................ Passed 0.03 sec -test 15 - Start 15: test_help_events - -15: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "help" "events" -15: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 -15: Test timeout computed to be: 10000000 -15: Usage: events [OPTION...] fast5 [fast5 ...] -15: Scrappie basecaller -- basecall via events -15: -15: -#, --threads=nparallel Number of reads to call in parallel -15: --dump=filename Dump annotated events to HDF5 file -15: --dwell, --no-dwell Perform dwell correction of homopolymer lengths -15: -f, --format=format Format to output reads (FASTA or SAM) -15: --hdf5-chunk=size Chunk size for HDF5 output -15: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, -15: 1: quickest, 9: best) -15: --licence, --license Print licensing information -15: --local=penalty Penalty for local basecalling -15: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -15: -m, --min_prob=probability Minimum bound on probability of match -15: -o, --output=filename Write to file rather than stdout -15: -p, --prefix=string Prefix to append to name of each read -15: --segmentation=chunk:percentile -15: Chunk size and percentile for variance based -15: segmentation -15: --slip, --no-slip Use slipping -15: -s, --skip=penalty Penalty for skipping a base -15: --temperature1=factor Temperature for softmax weights -15: --temperature2=factor Temperature for softmax bias -15: -t, --trim=start:end Number of events to trim, as start:end -15: --uuid, --no-uuid Output UUID -15: -y, --stay=penalty Penalty for staying -15: -?, --help Give this help list -15: --usage Give a short usage message -15: -V, --version Print program version -15: -15: Mandatory or optional arguments to long options are also mandatory or optional -15: for any corresponding short options. -15: -15: Report bugs to . -10/19 Test #15: test_help_events ................. Passed 0.03 sec -test 16 - Start 16: test_help_event_table - -16: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "help" "event_table" -16: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 -16: Test timeout computed to be: 10000000 -16: Usage: event_table [OPTION...] fast5 [fast5 ...] -16: Scrappie basecaller -- basecall via events -16: -16: --licence, --license Print licensing information -16: -o, --output=filename Write to file rather than stdout -16: --segmentation=chunk:percentile -16: Chunk size and percentile for variance based -16: segmentation -16: -t, --trim=start:end Number of events to trim, as start:end -16: -?, --help Give this help list -16: --usage Give a short usage message -16: -V, --version Print program version -16: -16: Mandatory or optional arguments to long options are also mandatory or optional -16: for any corresponding short options. -16: -16: Report bugs to . -11/19 Test #16: test_help_event_table ............ Passed 0.03 sec -test 17 - Start 17: test_help_raw - -17: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "help" "raw" -17: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 -17: Test timeout computed to be: 10000000 12: #one 12: pos base current sd dwell 12: 0 T 0.273674 0.499835 0.755774 @@ -288749,50 +288665,6 @@ 12: 924 G 1.467776 0.122657 8.328823 12: 925 T 1.156435 0.141427 7.031790 12: 926 A 0.296050 0.161997 7.324443 -17: Usage: raw [OPTION...] fast5 [fast5 ...] -17: Scrappie basecaller -- basecall from raw signal -17: -17: -#, --threads=nparallel Number of reads to call in parallel -17: -f, --format=format Format to output reads (FASTA or SAM) -17: --hdf5-chunk=size Chunk size for HDF5 output -17: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, -17: 1: quickest, 9: best) -17: -H, --homopolymer=homopolymer Homopolymer run calc. to use: choose from -17: "nochange" or "mean" (default). Not implemented -17: for CRF. -17: --licence, --license Print licensing information -17: --local=penalty Penalty for local basecalling -17: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -17: --model=name Raw model to use: "raw_r94", "rgrgr_r94", -17: "rgrgr_r941", "rgrgr_r10", "rnnrf_r94" -17: -m, --min_prob=probability Minimum bound on probability of match -17: -o, --output=filename Write to file rather than stdout -17: -p, --prefix=string Prefix to append to name of each read -17: --segmentation=chunk:percentile -17: Chunk size and percentile for variance based -17: segmentation -17: --slip, --no-slip Use slipping -17: -s, --skip=penalty Penalty for skipping a base -17: --temperature1=factor Temperature for softmax weights -17: --temperature2=factor Temperature for softmax bias -17: -t, --trim=start:end Number of samples to trim, as start:end -17: --uuid, --no-uuid Output UUID -17: -y, --stay=penalty Penalty for staying -17: -?, --help Give this help list -17: --usage Give a short usage message -17: -V, --version Print program version -17: -17: Mandatory or optional arguments to long options are also mandatory or optional -17: for any corresponding short options. -17: -17: Report bugs to . -12/19 Test #17: test_help_raw .................... Passed 0.03 sec -test 18 - Start 18: test_help_squiggle - -18: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "help" "squiggle" -18: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 -18: Test timeout computed to be: 10000000 12: 927 C -0.836542 0.154324 7.840771 12: 928 T 0.824620 0.159619 7.303357 12: 929 T 1.516868 0.156615 7.500086 @@ -289777,31 +289649,6 @@ 12: 938 A 0.407659 0.175595 10.353537 12: 939 G 1.101753 0.140163 9.739885 12: 940 T 0.445780 0.120623 8.930588 -18: Usage: squiggle [OPTION...] fasta [fasta ...] -18: Scrappie squiggler -18: -18: --licence, --license Print licensing information -18: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -18: -m, --model=name Squiggle model to use: "squiggle_r94", -18: "squiggle_r94_rna", "squiggle_r10" -18: -o, --output=filename Write to file rather than stdout -18: -p, --prefix=string Prefix to append to name of each read -18: --rescale, --no-rescale Rescale network output -18: -?, --help Give this help list -18: --usage Give a short usage message -18: -V, --version Print program version -18: -18: Mandatory or optional arguments to long options are also mandatory or optional -18: for any corresponding short options. -18: -18: Report bugs to . -13/19 Test #18: test_help_squiggle ............... Passed 0.03 sec -test 19 - Start 19: test_version - -19: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "version" -19: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 -19: Test timeout computed to be: 10000000 12: 941 T 0.111700 0.122114 8.976299 12: 942 G -0.941675 0.146818 8.386247 12: 943 T -1.290152 0.129500 8.042553 @@ -290447,19 +290294,202 @@ 12: 603 G -0.572062 0.335164 12.230327 12: 604 C 0.561030 0.467363 9.792212 12: 605 T -0.235200 0.581865 6.671800 -14/19 Test #12: test_squiggle_r10 ................ Passed 0.23 sec + 8/19 Test #12: test_squiggle_r10 ................ Passed 0.14 sec +test 13 + Start 13: test_licence + +13: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "license" +13: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 +13: Test timeout computed to be: 10000000 +13: This software is subject to the terms of the Mozilla Public +13: License, v. 2.0. If a copy of the MPL was not distributed with this +13: file, You can obtain one at http://mozilla.org/MPL/2.0/. +13: +13: (c) 2017 Oxford Nanopore Technologies Ltd. +13: +13: +13: +13: The vectorised math functions 'src/sse_mathfun.h' are from +13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is +13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. + 9/19 Test #13: test_licence ..................... Passed 0.01 sec +test 14 + Start 14: test_help + +14: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "help" +14: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 +14: Test timeout computed to be: 10000000 +14: Scrappie is a technology demonstrator for the Oxford Nanopore Technologies +14: Limited Research Algorithms group. +14: +14: Basic usage: +14: * scrappie events Base call from event based data. +14: * scrappie help Print general help or help about specific Scrappie command. +14: * scrappie licence Print licensing information. +14: * scrappie raw Base call directly from raw signal. +14: * scrappie version Print version information. +14: * scrappie squiggle Create approximate squiggle for sequence +14: * scrappie mappy Map signal to approximate squiggle +14: * scrappie seqmappy Map signal to sequence via basecall posteriors +14: * scrappie event_table Output table of events for read +14: +14: This project began life as a proof (bet) that a base caller could be written +14: in a low level language in under 8 hours. Some of the poor and just plain odd +14: design decisions, along with the lack of documentation, are a result of its +14: inception. In keeping with ONT's fish naming policy, the project was originally +14: called Crappie. +14: +14: Scrappie's purpose is to demonstrate the next generation of base calling and, as +14: such, may change drastically between releases and breaks backwards +14: compatibility. Newer versions may drop support of current features or change their +14: behaviour. +10/19 Test #14: test_help ........................ Passed 0.01 sec +test 15 + Start 15: test_help_events + +15: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "help" "events" +15: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 +15: Test timeout computed to be: 10000000 +15: Usage: events [OPTION...] fast5 [fast5 ...] +15: Scrappie basecaller -- basecall via events +15: +15: -#, --threads=nparallel Number of reads to call in parallel +15: --dump=filename Dump annotated events to HDF5 file +15: --dwell, --no-dwell Perform dwell correction of homopolymer lengths +15: -f, --format=format Format to output reads (FASTA or SAM) +15: --hdf5-chunk=size Chunk size for HDF5 output +15: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, +15: 1: quickest, 9: best) +15: --licence, --license Print licensing information +15: --local=penalty Penalty for local basecalling +15: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +15: -m, --min_prob=probability Minimum bound on probability of match +15: -o, --output=filename Write to file rather than stdout +15: -p, --prefix=string Prefix to append to name of each read +15: --segmentation=chunk:percentile +15: Chunk size and percentile for variance based +15: segmentation +15: --slip, --no-slip Use slipping +15: -s, --skip=penalty Penalty for skipping a base +15: --temperature1=factor Temperature for softmax weights +15: --temperature2=factor Temperature for softmax bias +15: -t, --trim=start:end Number of events to trim, as start:end +15: --uuid, --no-uuid Output UUID +15: -y, --stay=penalty Penalty for staying +15: -?, --help Give this help list +15: --usage Give a short usage message +15: -V, --version Print program version +15: +15: Mandatory or optional arguments to long options are also mandatory or optional +15: for any corresponding short options. +15: +15: Report bugs to . +11/19 Test #15: test_help_events ................. Passed 0.01 sec +test 16 + Start 16: test_help_event_table + +16: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "help" "event_table" +16: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 +16: Test timeout computed to be: 10000000 +16: Usage: event_table [OPTION...] fast5 [fast5 ...] +16: Scrappie basecaller -- basecall via events +16: +16: --licence, --license Print licensing information +16: -o, --output=filename Write to file rather than stdout +16: --segmentation=chunk:percentile +16: Chunk size and percentile for variance based +16: segmentation +16: -t, --trim=start:end Number of events to trim, as start:end +16: -?, --help Give this help list +16: --usage Give a short usage message +16: -V, --version Print program version +16: +16: Mandatory or optional arguments to long options are also mandatory or optional +16: for any corresponding short options. +16: +16: Report bugs to . +12/19 Test #16: test_help_event_table ............ Passed 0.01 sec +test 17 + Start 17: test_help_raw + +17: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "help" "raw" +17: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 +17: Test timeout computed to be: 10000000 +17: Usage: raw [OPTION...] fast5 [fast5 ...] +17: Scrappie basecaller -- basecall from raw signal +17: +17: -#, --threads=nparallel Number of reads to call in parallel +17: -f, --format=format Format to output reads (FASTA or SAM) +17: --hdf5-chunk=size Chunk size for HDF5 output +17: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, +17: 1: quickest, 9: best) +17: -H, --homopolymer=homopolymer Homopolymer run calc. to use: choose from +17: "nochange" or "mean" (default). Not implemented +17: for CRF. +17: --licence, --license Print licensing information +17: --local=penalty Penalty for local basecalling +17: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +17: --model=name Raw model to use: "raw_r94", "rgrgr_r94", +17: "rgrgr_r941", "rgrgr_r10", "rnnrf_r94" +17: -m, --min_prob=probability Minimum bound on probability of match +17: -o, --output=filename Write to file rather than stdout +17: -p, --prefix=string Prefix to append to name of each read +17: --segmentation=chunk:percentile +17: Chunk size and percentile for variance based +17: segmentation +17: --slip, --no-slip Use slipping +17: -s, --skip=penalty Penalty for skipping a base +17: --temperature1=factor Temperature for softmax weights +17: --temperature2=factor Temperature for softmax bias +17: -t, --trim=start:end Number of samples to trim, as start:end +17: --uuid, --no-uuid Output UUID +17: -y, --stay=penalty Penalty for staying +17: -?, --help Give this help list +17: --usage Give a short usage message +17: -V, --version Print program version +17: +17: Mandatory or optional arguments to long options are also mandatory or optional +17: for any corresponding short options. +17: +17: Report bugs to . +13/19 Test #17: test_help_raw .................... Passed 0.01 sec +test 18 + Start 18: test_help_squiggle + +18: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "help" "squiggle" +18: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 +18: Test timeout computed to be: 10000000 +18: Usage: squiggle [OPTION...] fasta [fasta ...] +18: Scrappie squiggler +18: +18: --licence, --license Print licensing information +18: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +18: -m, --model=name Squiggle model to use: "squiggle_r94", +18: "squiggle_r94_rna", "squiggle_r10" +18: -o, --output=filename Write to file rather than stdout +18: -p, --prefix=string Prefix to append to name of each read +18: --rescale, --no-rescale Rescale network output +18: -?, --help Give this help list +18: --usage Give a short usage message +18: -V, --version Print program version +18: +18: Mandatory or optional arguments to long options are also mandatory or optional +18: for any corresponding short options. +18: +18: Report bugs to . +14/19 Test #18: test_help_squiggle ............... Passed 0.01 sec +test 19 + Start 19: test_version + +19: Test command: /build/reproducible-path/scrappie-1.4.2/build_sse2/scrappie "version" +19: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_sse2 +19: Test timeout computed to be: 10000000 19: scrappie 1.4.0- -15/19 Test #19: test_version ..................... Passed 0.03 sec +15/19 Test #19: test_version ..................... Passed 0.01 sec 2: ATTTTTTTAACAATTGGAAATTCAGTTTTTTGTATTTAACGAATTTTTTTATTTTCTAACTGTGAAAATATATTGGACGGTCGTTTTGTATATTTGGCATATTATTTGTAATATTTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTGTATATTAATCATGCGATTATGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTGCTTTATTGTCCTGGCTGAATATTCTTTACTGTTGGATGGAAGGATGTTAATGACATCAAATATCTTGTTAAGATCTCAATTGCAAGATTTTATATTGTATTATTTTTTTAGTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTCTTTACTGGTGATTTGACATTTTGTACCTGTCACCTGAGCAGTATTATCAGTGGTAGTCTTTTATCATATCATCTCTTGTTCCCCAAATTATCAAGTCCGTGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGATGATGTTTGGTTTTCATTCTAGAGTTACTTCATGATAATGATCTCCAAATTCCATTCAAATTTGCTGAAAATGCATTATTTCGTTCCTTTTGTGGCTGGTAATATTCCATAGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGAGCTGGTTTTCATATTTTTTCAGGTACAGAATTGCTGCTATAAACATTTATTTTCATTACGTAATCTATTTCGTATAATGACTATTCTGGGCCAAAGGTAGGTCTAAAAGATCTGCTTTTAGTTCTTTAAGATCTCCACACCTTTACATTAATGGTTATACTAGTTTACATTCCCATCAATATTCTTAAATTGTTTCCTTTTCACCAATCACCAACATCTATTGTTTTGATTTTTTTATTAGGGGCCGTTCTTTCAGGGTGAGTGGTATCCCACTGTGGTTTTTTGATTTACATTTCCCTGATCATTAGTGATGTTGGGCATTTTAATACAGGCCATTTATATCTTCTTTGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTCTCCATCTCTGTCAGGTTGTCGTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTTCTTGGTCGCGAAGTCTTTTGCCTAATAACCCAATGTCTCTAGAAGGTTTTCAACGTTATCTTCTAGAATTTTTTTATAGGGTTTCATCTTAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTTGTATAAGGTGAGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCAGGTTACCAATTCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTGTTGAGGATCAGTTGGCTGTAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATGCCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAATGTGATGCCTCCAATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGAATGATGGTGGTATTTTTTGATGAGGAATTGCATTAGTTGTAGGTACTTTTGGCAGTATGGTCATTTTCACAATATTGATTTACTCATCCATGAGATAGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTGCAGCTAATGTAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCGCCTTATACTTGAGGCTACTGATTTGTGTACATTAATTTTGTATCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTGGGTTTTCTAGGTATACGATCATATCATCCTTAAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCGCACGGGAAATGCTTTCTTTTCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTATCACAGGTGGTTTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGATGCTGGATTTTTTGTCAAATATTTTTTTTCTGTGTTTGTGAGATGATCATGTGATTCTTGTTTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGATTTTTTGCATCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTTGTTATATGTCCTTTCCTGGTTTTGATATTACAGTGATACTGCTTCATTGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAGCTAGGATTGGTACCAATTTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCACAAACTATTTTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGGTTGTATCTTTCCAGGAATTTATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTGAGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTTGTTTTATCTTTTGTATGTTTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTTTCTGCTGGGTTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATTTATGTAGGTAATGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCACAGAAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTAGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCAGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAATTTTTTTACATTTCTATCCTGATTTCATTGATGCCCAATGATTTTCTAGGAAGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTTGGGGTTGATTTCCAATCTTAATTCCTGTAGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCTGTATATATTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTGCATTTGTTGAATCTTCTCCACATATCCTGTAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCATTGGGTACTGAAGTCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTCCTGGATTCGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTTTACCGGCTGTTGCTTTAAGTTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTAGTGTCCATTTGCATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTAGTGAGTCTAGTAGAGACAGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTTAAGTGGAGCATTTAGGCCATTTACATTCAGTGTTAGTATTGAGATGAGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTTTTTTTAAATCATTGCATTATTGTTTTATAAGATCCTGTGAGAGGTTAAACGCAAAACAGACGCCGAAGACT 2: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.459646, "nevent" : 5787, "sequence_length" : 1694, "events_per_base" : 3.416175 } 2: CTCAGTGCATTAACCAACCTACCTTCAATGCTCCACCATCCAGCCTCGGTAATAATTACGCGCCCCTTCCCTTGAATCACCTTCACTAAAAGCCATGTTGAATCCCACAATGTAGGCCATCAGCTCAGGAAATAGAACATCAGCATGGGAGGTAGTAAGGCAGATGAAAAAATCATGCCTCTCATCAGTGCCAGTAGAATGACTCATTTCTCAATACCTAAAATAAAGAAATCGATGATTTACATGAGATCAGAATGGGCCGTAACAAACAGGTGCTCTGACAGGTGCCCAATCGATAGAGAACAAAGCAGGGAATAATGACTGGTTGACCAGAGCCAATCCTTCCATTCAACCCTACACTATTCCAATGATATTGTCACATATCACTTGTGTGCCATCAATATATTCAACACTTCTCCAATCCATATGGCCAACCAGATCAAAGGTGGCATCACAAGCCAAGGCCGGTGTCAGGAATTTCAGACCAAATATCATGCCTTCATTCAGTAGGTAGCGTATCTGCCGCTGTAAAATCAGACAAAGCCAGATCCGCCATAATGCTTCCTTCCACTCGGCCTCACTTCTCATCATTAAACCTCAGGCATGCCGAAATGGAACATGGAGCCCTAAAATGAATAGCCTCATCAGTGGGTAATCCCACTGTCATCTAATCAAAGGCCCCATACATTCATCAGAATAGAAATGGTGGTGGCATGGAACCCTTCTGAACAACATCTCAAATGCAGTGCTTCAATGAAGTAAACCTGCTCATAGGAGGCAGCTAAGCTAAAATCAGGAAAATTGCATGGTTACAAGCCCGCCGAAATGAATACAAAGCGCAAACCACTACCAGCCCCAGAATAATCAATAAATATACATAGCCAGAATCGAATAAGTCAGTATGACGCCGCGCTTCAATAGTAGCAATCAGATCAGCATTATTTATCCTTCAATCCAATAGGAAATTCCTTCAAATGCTAGACGGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAATGAGCTCAATCTCCATATTAATGCTTCATTGCCATCTCCACTATCATCCTTATTATTCTCAATAAAACCATAAACAAGTGAGGCCCATCCATAAATAAATGCAGCCATCCAGATAGCCTCAAAATAAGGCTGAGTATCATTCATTCACCCCTTGCCAATATTCTCATCCTTCCCTTCTCCATCCCAGCCATGCCATCTTAACATCGCTCAGCATTTTGATAGCGTAAATAGATAGGTCAATTTCAGAGCAGTCAAAATAAATAGGCTGGAAATCAAATGTGAGGCAGATGCCAGTGGAATGGTGGGCGCTCCATTGACACCACTTCCTCCAGCTCAATTTTCTCGATAAAAGAAATCGATCTGAACAATTTTGTTGCCCGTCGCTTATTCCAAATAGTGGCGCTGACTAAACACCGCTCAATGAATCATCATCAACCTTCTACTCGTACCAGATGCCTCATCAGCCAAAATCAAATATCCTTCAATAAGTGGGCAGTATGAATGGTGGGCCAATGGTACTATCAGCCAGAATGTTCTTCGAAAATAGTGACCTAAATGGAAAATTTGGCCTCGTACCAGTAAATAAATTCTGACGAGCATCAGTGAAAAAAACATGTAGACGGATGGGTCGGCTGCCTCCAGCATTTCCATCTCATGAAGCGGGCGCATGAAA -16/19 Test #2: test_events_call ................. Passed 14.63 sec -6: scrappie: No basecall returned for /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 -6: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.914597, "nblock" : 16158, "sequence_length" : 31, "blocks_per_base" : 521.225806, "nsample" : 81106, "trim" : [ 200, 80990 ] } -6: TCTGGTTTTTTATTATGTTTTATCTTCCATA -6: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.972209, "nblock" : 5778, "sequence_length" : 3087, "blocks_per_base" : 1.871720, "nsample" : 29150, "trim" : [ 200, 29090 ] } -6: GCTTCAGCATCTGCTGGGTCTTGTCTGCACATCGACAATGATTTCTGCCACTTTCAGCTTTTCACCGAATGTTTTTAGCCTTTTTCAGCCATAACCGCGATACTTTTTCCGTCAACGATAGTGGACACTTCCATAAAATCAACAGCTGCGGGGAAATCGTTGGTTTGAATCATGTTTCAGCAGATAAGCGAGGAATTTATCGGGAACAGAGGTCGCAGATAGCGACAACGTCTCTATTCCTTTGACTTCGCTGATGGACCAATACCAGTCGACCGATACAACCAGAACCGTTGATACCAACTTTGCTCATGGTTTTTTCTGAAACGTTGGATGAAATTGATCCCTTTCGCTTGAACCGGGATGGCGGGAATGACAATCTCCATTCGCATAAAACGTAACGTCTGGAAACGGGTAAACAATATTTTAATTGAAATTCAGAAAAAGCCCGTTTTAACAGAAAATTATGTTGCAAGCCAGAAATATTCTGGAAAATAAATATCAAGGTTACAAAATCAGCGTCACTGGCTGGTCTTTTTACTGGTTATCGCAGCGTATTACGCGCAATGAATTGCGTGGTTTTGCCGCGTGCGCACGATCCAGCCACTGCATGAGCATCATTCTCGCGCTTTCCTCTGGCATCTCGATTTTTGTGCTGATGGTCATCGCCTCTTTTATGAGGCTGGATACCCGACCGCCAGTACCTCAACAGAACCGATGATGAGCGGGACTGGCGCGTTTGCGGAACGTGCGTGGTCGCCACCTCTATTGTTGCCGCTGCCGGTGACTGGTTTTGGTAACGGGCAACCCGTGGTTGCTGCTGGTTTGACGATGCCTTACGCTCAAGAGGCCGATTTTCGAACGGGTAAAGTCACTAAATACGTGGCATGGAAACGCTGGCGAATCTGGGATGTTCCTGTCATCAGGTTAGCGCTGCGCTGCGCCTGGCACGCCACTATTCTGGAAAGGCGAAAGGCCGCTTTTGCGCATGATGCGGCGTTTAAGCCATCCTGAAGGATATTTAAAGAAACGCCCTGTGGAATTCAAAGCCATAATTATAAAGGAGATACAGATCTGTCACGGAAACGCCTGTGCTGTACTGTGTGATGGATGAAACCGTAATCCTTGCCCGTTACGTCATCTGGCTTCTTGATCCGCATTACACCCGATCTTTAATACATCATAATATCAAAATAAACCAGCGTCTTAAGTAATTTTCAGGATCAAACATAAATCGATAAACCATGGAGGTTGCTACATGAAAAAACTGGCTTTATTCTGTTTACTCGGAAACGTTGTTTCCTTTTATCCCGATACCGGGCGAAACCCCGCTCTGGGTTCGAAAGGGGGATCTGGCGCTGTTGCGGCAGGCGGCAAATTCTTTTGTGGTGATATCATACGCTCATGCAGCCAAAAAAGACAACATCAACTAACTAAAATGTGAAAAGGGTGCCATAAAAAATGGATACTGGCGGTCAAATAGCGGGAGAAAATCCCCGCGCTGTACTGGACATGCAGGCCATGAGCGCAGCAACCTCCTTGTCACCAGCCCCGGAGCCGGCATCGTAGAGCGTTTGTCGGGTCAGGAATGTAAATGTCAGAATCGTGATGCGGATAATGACAGACACGCACCAGCAGTTCCACGCTCGTAGCTTTCTGTCCTTGCCGGATGGCGGGTAAGGCCTTCAATCCTGAACTGCTGGTTCCGTTCGTTGGCTTCGATTAATGCGAAAATGTCGGGGCCTTCAGTTTCTGATCACCGGTTAGCCTGGAAACGGAAAGTGCGATATCCCGCAGGGCGTTTTGTAAGGTTTTATTCAGGGGACAAGAAATGATCATTTCACGAAATTGCGTGCTGTCTTCCAGAATTTTTCCATCGTTCGGGTTAGCCAGTTTTAGCCATCGTACTCTCTTCATTTCCAATAGCATTAATTTTCTATGCAATAATGTTGCTGAAGCATGATAACAAAAGATTTTGGTCAGTGATAATTACCGTCAATGCCAAATCGTTATCAGGAGTGAACCTGGACGGCGAAAAACAACCAATAATGAATGGCACTCCTCGCAGCGATTGGTTGCCGCGCATCGCGTCGGGTTGGTTCGTTATTGCCTGCGTCTTCGGCGGTATTTTTGACTATTCGCGTAAGTCGGCCTGGCTGGCTATTTCCTCTGGCAGGCCGATCACGATCAGCGTGGTCTGCCAGAAATTAAAATTCGAACCGGGTTAAAAACATGCAATTGTTGCCATCAGCCCGGATGCGGCGTGATCAGCCCGGGGCTGCAAGTCGTGTTACGGAAATGGAAGCGATGAACCAAATATCGCGCAACCAGATCGAAATTAAACAGTGGCAGCAGGTTATCGTGCTGCGGAATGGGCCGGTGAAAACACCTGCTGGTGAAGCCCTCCGACGCTGAATTAAATCAACGCTTTCAGGCTTATATCGCGGGTATTGATCCTGTATTGAAATATGCCAAAACTGGCGTATGAAGGCGATATCAATCATGAAAGCTGACAGACCCGACCGCTGGATAATGCTTATACCCGATATTTTGAAGCAGATTCGTCAGTCTGGCGGCTACGAAACGACGGCTGGCGGAACTGTAACCATCAGCGCACCCGCCTGGGTCGAATGCCGTGATTGGCGCGTTTGTCTTTGCCCTGGTCCTGCCTGACACTGATAACCGTTGTAGTGCTGCATCCAGATCATCATTTCGTCACTAAGTATTGCCGCGCAACAGATGAAGATTCGCCAGGTGGCAGTGAATGATGAACCAGCAGGTCGTAATGAAATCATCTTTAAGTCATCAGTCAGCGAATGCGCATTCACTGGGGATGACGGTCAGGAGCTGTTCGACGGGCGCGGAAGAGATTTATCATGGCACCAGCGAACCTGCGCTGGCGATGCGGACCTGTTATCTCGCGCTGGAGAACAACACGGCTATCGAAGCGACTGCCGCGCATCAAAACAACCACTCGTAACGGAAAACGGAATGCGGATAGCGCGCGTCGTGCCAGCAAAGCTGGCGCAAAGGCTTCTATAAGCCCAGCGATGGCGGGCAGACAGTTTCCGGTGTAGTAAAAGCGAAGCA -17/19 Test #6: test_rawrgrgr_r10_call ........... Passed 17.06 sec +16/19 Test #2: test_events_call ................. Passed 15.18 sec 10: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 to /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa -- score 11581.230469 over 12818 blocks (0.903513 per block) 10: block pos 10: 0 -1 @@ -303280,25 +303310,31 @@ 10: 12815 -1 10: 12816 -1 10: 12817 -1 -18/19 Test #10: test_seqmappy .................... Passed 4.95 sec +17/19 Test #10: test_seqmappy .................... Passed 4.33 sec +6: scrappie: No basecall returned for /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 +6: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.914597, "nblock" : 16158, "sequence_length" : 31, "blocks_per_base" : 521.225806, "nsample" : 81106, "trim" : [ 200, 80990 ] } +6: TCTGGTTTTTTATTATGTTTTATCTTCCATA +6: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.972209, "nblock" : 5778, "sequence_length" : 3087, "blocks_per_base" : 1.871720, "nsample" : 29150, "trim" : [ 200, 29090 ] } +6: GCTTCAGCATCTGCTGGGTCTTGTCTGCACATCGACAATGATTTCTGCCACTTTCAGCTTTTCACCGAATGTTTTTAGCCTTTTTCAGCCATAACCGCGATACTTTTTCCGTCAACGATAGTGGACACTTCCATAAAATCAACAGCTGCGGGGAAATCGTTGGTTTGAATCATGTTTCAGCAGATAAGCGAGGAATTTATCGGGAACAGAGGTCGCAGATAGCGACAACGTCTCTATTCCTTTGACTTCGCTGATGGACCAATACCAGTCGACCGATACAACCAGAACCGTTGATACCAACTTTGCTCATGGTTTTTTCTGAAACGTTGGATGAAATTGATCCCTTTCGCTTGAACCGGGATGGCGGGAATGACAATCTCCATTCGCATAAAACGTAACGTCTGGAAACGGGTAAACAATATTTTAATTGAAATTCAGAAAAAGCCCGTTTTAACAGAAAATTATGTTGCAAGCCAGAAATATTCTGGAAAATAAATATCAAGGTTACAAAATCAGCGTCACTGGCTGGTCTTTTTACTGGTTATCGCAGCGTATTACGCGCAATGAATTGCGTGGTTTTGCCGCGTGCGCACGATCCAGCCACTGCATGAGCATCATTCTCGCGCTTTCCTCTGGCATCTCGATTTTTGTGCTGATGGTCATCGCCTCTTTTATGAGGCTGGATACCCGACCGCCAGTACCTCAACAGAACCGATGATGAGCGGGACTGGCGCGTTTGCGGAACGTGCGTGGTCGCCACCTCTATTGTTGCCGCTGCCGGTGACTGGTTTTGGTAACGGGCAACCCGTGGTTGCTGCTGGTTTGACGATGCCTTACGCTCAAGAGGCCGATTTTCGAACGGGTAAAGTCACTAAATACGTGGCATGGAAACGCTGGCGAATCTGGGATGTTCCTGTCATCAGGTTAGCGCTGCGCTGCGCCTGGCACGCCACTATTCTGGAAAGGCGAAAGGCCGCTTTTGCGCATGATGCGGCGTTTAAGCCATCCTGAAGGATATTTAAAGAAACGCCCTGTGGAATTCAAAGCCATAATTATAAAGGAGATACAGATCTGTCACGGAAACGCCTGTGCTGTACTGTGTGATGGATGAAACCGTAATCCTTGCCCGTTACGTCATCTGGCTTCTTGATCCGCATTACACCCGATCTTTAATACATCATAATATCAAAATAAACCAGCGTCTTAAGTAATTTTCAGGATCAAACATAAATCGATAAACCATGGAGGTTGCTACATGAAAAAACTGGCTTTATTCTGTTTACTCGGAAACGTTGTTTCCTTTTATCCCGATACCGGGCGAAACCCCGCTCTGGGTTCGAAAGGGGGATCTGGCGCTGTTGCGGCAGGCGGCAAATTCTTTTGTGGTGATATCATACGCTCATGCAGCCAAAAAAGACAACATCAACTAACTAAAATGTGAAAAGGGTGCCATAAAAAATGGATACTGGCGGTCAAATAGCGGGAGAAAATCCCCGCGCTGTACTGGACATGCAGGCCATGAGCGCAGCAACCTCCTTGTCACCAGCCCCGGAGCCGGCATCGTAGAGCGTTTGTCGGGTCAGGAATGTAAATGTCAGAATCGTGATGCGGATAATGACAGACACGCACCAGCAGTTCCACGCTCGTAGCTTTCTGTCCTTGCCGGATGGCGGGTAAGGCCTTCAATCCTGAACTGCTGGTTCCGTTCGTTGGCTTCGATTAATGCGAAAATGTCGGGGCCTTCAGTTTCTGATCACCGGTTAGCCTGGAAACGGAAAGTGCGATATCCCGCAGGGCGTTTTGTAAGGTTTTATTCAGGGGACAAGAAATGATCATTTCACGAAATTGCGTGCTGTCTTCCAGAATTTTTCCATCGTTCGGGTTAGCCAGTTTTAGCCATCGTACTCTCTTCATTTCCAATAGCATTAATTTTCTATGCAATAATGTTGCTGAAGCATGATAACAAAAGATTTTGGTCAGTGATAATTACCGTCAATGCCAAATCGTTATCAGGAGTGAACCTGGACGGCGAAAAACAACCAATAATGAATGGCACTCCTCGCAGCGATTGGTTGCCGCGCATCGCGTCGGGTTGGTTCGTTATTGCCTGCGTCTTCGGCGGTATTTTTGACTATTCGCGTAAGTCGGCCTGGCTGGCTATTTCCTCTGGCAGGCCGATCACGATCAGCGTGGTCTGCCAGAAATTAAAATTCGAACCGGGTTAAAAACATGCAATTGTTGCCATCAGCCCGGATGCGGCGTGATCAGCCCGGGGCTGCAAGTCGTGTTACGGAAATGGAAGCGATGAACCAAATATCGCGCAACCAGATCGAAATTAAACAGTGGCAGCAGGTTATCGTGCTGCGGAATGGGCCGGTGAAAACACCTGCTGGTGAAGCCCTCCGACGCTGAATTAAATCAACGCTTTCAGGCTTATATCGCGGGTATTGATCCTGTATTGAAATATGCCAAAACTGGCGTATGAAGGCGATATCAATCATGAAAGCTGACAGACCCGACCGCTGGATAATGCTTATACCCGATATTTTGAAGCAGATTCGTCAGTCTGGCGGCTACGAAACGACGGCTGGCGGAACTGTAACCATCAGCGCACCCGCCTGGGTCGAATGCCGTGATTGGCGCGTTTGTCTTTGCCCTGGTCCTGCCTGACACTGATAACCGTTGTAGTGCTGCATCCAGATCATCATTTCGTCACTAAGTATTGCCGCGCAACAGATGAAGATTCGCCAGGTGGCAGTGAATGATGAACCAGCAGGTCGTAATGAAATCATCTTTAAGTCATCAGTCAGCGAATGCGCATTCACTGGGGATGACGGTCAGGAGCTGTTCGACGGGCGCGGAAGAGATTTATCATGGCACCAGCGAACCTGCGCTGGCGATGCGGACCTGTTATCTCGCGCTGGAGAACAACACGGCTATCGAAGCGACTGCCGCGCATCAAAACAACCACTCGTAACGGAAAACGGAATGCGGATAGCGCGCGTCGTGCCAGCAAAGCTGGCGCAAAGGCTTCTATAAGCCCAGCGATGGCGGGCAGACAGTTTCCGGTGTAGTAAAAGCGAAGCA +18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 16.02 sec 7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.020645, "nblock" : 80790, "sequence_length" : 9342, "blocks_per_base" : 8.648041, "nsample" : 81106, "trim" : [ 200, 80990 ] } 7: CAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTAACCTGTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGGCTGAGGCAGGAGAATCCTTAAGCCAGGGCAGAGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAGAAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAAGAAATGTAGGCTATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTGGTGAGTATCTAATGAAAGCGTTCATTTAAGAATGTACAAGAAGCTATTTGTAGTAACTAGACCAGAGAAGACCTTGACAATATTTACTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGAAATAAATGCTATGCAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTAACAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTATTTCGCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGAAATCACTGCTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAGCCATATAATTACATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAAGTGTGTTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTTCACTTTTCATACAACTTTCTCACAAAGTTGATAAGTGTTTATTTTCTATTTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGGAAGTATCATTTCAGCTTTCCATCCATTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAGAAACGTTGTTGAAAACTTGAGGTAAGAATAAAATATTAAATATTTCTTTCTTTTAGTGTGTGTAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGTCTGCTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTACAATGCAATCATCAATAAGCTTAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCTAGCCATTGCTGCTTTAAGTTTTTCATTCTATTGTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCACTTGGCAGCTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTGAGTGCTTTCTCCATCTGCAAAGTTGGCTCATGGTGCTCTGCAATTACATAGTGCGTAGTAAGCACTCAATGTAGCTGCTGTATTGATGAGTATTGCCATACTCACGCTCATATCTAAACCAGAGATGGCAGTCTTTCTTTAAGGGCCGGATAACGAACATTTTGTGCTTGTGGACCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAGAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAGCAACAGTATGTGCAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGGGGATGCGTTTAGGATAGCATACTGAACTAGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTGTACTCACTCTTCCTGTTGCTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTTATACTCTACAAGGTCTTTCCTGATCCTCTGAGCTGTATCAGATGCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAATTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTAGATTTCAATTTATTAAGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTAAAAACACATATGCCTGGGCCTATATGCTGGACTTCAGAGATCTGAGTGTACAAGGTCTTGGTCAGGCATTTGCATTTAGAACCCCCTGAATGAAGTGCCCCAAAATATATGTTGAATAAAGCAATAAAACCCAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTATCACACTGTAGTTTCTGCATTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGACTCAGACGAGGCACTTAGAATATGCTTTGGCTTTAAAAGTCATGGATGGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAGAAAGAAAAAGCCTCCTTATTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTATTATTTGTACCAGAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTAAATAGAGGGCCTAGTTTTTGTTTTGTTTTGTTTTTAAATGGGGTCTTGCTCTGTGTGCCCAGGTTGGAGTGCAGTGTTATGGTCACTTAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTGTAGATGTGCACCACTTAGGCTAATGTCTAATTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGACTGATCTTGTGAACTCCAGGTCAAATAGTCCACACTCCCACCCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCCTTATGCCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTGACTTAGTAAACGTTTAATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAATATGCTTGATTTCTTTTCTTTTTTTAATAGTGACAGAGGTCTCTTGCTATACCTGTTGCCCAGGCTGGTCTAGAACTCCTGACCCAAAGCGGGATTACAGACATGATGATCCACCATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCCTCCAGGCCTGGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGGTTAGCCTTAGAGAGGGCTGTCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCCGTGGCTTCTCCATCCAGAGACAAATAAGAGAGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGATTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTAGTATGTTTTCTTCTTTACTTACAGTGTTTTGGTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTAAATAACCTGTGAAGCATTTAATGACTTTGTTCCTTGTTTAAACAAGTAAAAACCACAGCTAGTAATCTTAAAGATCGGAGCTGTATATATGTAAATATTCCGTTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGAAGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCCAATACAGCTTCATGAATTATTAGCATTGCGAGACAGACCTAAATGAATCAGGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAGAAAACTATACTGGAAGCACTTCATTTAATTTCTTAGGAGTGGATAGGAGATAAGTAAGACTTTAGAGTAACAAATATGCCTGTGGACACTCTGAAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAAGAACTGGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGTAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTAAGCATGGGAACCACCCCAAGATTCATTTGCCACCTCCCACCTGGTCTCTCCCTTACCCGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACCACACACCATTCCACTTGGCCTCTCCCAAATCTCATGTCGGTTTACTCACATTCCCAAAGTCAACTGTGGCTTCCCAATGGTCCCCAAAGTCTTGCTCATTCCAGCTTAATTAGCCCAGAAGTCCAAGTCCAAAGTACTCATCTGAGATAAGGCCAAAGTCCCTTCCATCTATGAGCCTATAAAATCAAAGAAGTAAGTTAGATTACTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCAAACAAAGGGGCTGTAGGCCCCAGAAAGTCTGCAATCAATAAGGCAGTCATTAAGCTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACATCCAGCCCACTGATGCAGAGTGGGCTCCCACAGCCTCATGCAGCTCGACCTCTGTGGCTCCATGCCTCACATCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTAACCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCACCATTCTGGGGGTCTGGAGGATGGTGGCCCTCTTCTCATGGCTCCCACTAGGCGGTGCCCCGAGTGGGGACTGTAGGGGTCCAACTGCCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCGCAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTTGCTGCAATGCTGTTACATGTAAGCCGCCAAGGCTTGGGGCTTGCACTCTCCTGGAAGCCCTGGGCTATACGCTGGCCCCTTACAGCCATGAGTGGGGATGCCAGGACGCAAGTTCCCGAGACTGCCAAAGCAGCAAGGCCCTGGCCACAAAACCATTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACCTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAATGGGTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTAAATGCTGGTTCAGTTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGCAGAGGCAAGAATGTACCCTTCTCTTTGCTAGAGCATAAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAATTTGCAAGCTTTCCACTTCTTCTGTCTTCTGAGCCTCCATCCTGTTCCAACACTGCCTATTACTCCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAAGACATTTATTTCTCACAGTTGGCTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCTGGCAAGGGCTTTCTTGCTGCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAAACAGAATTGGCAGAATCCTTTTATAATAAAGCCATTCTCAATAACCCACTCCCTTGGTAACAATATTGAATTATTCATTCATGAGGACAGAGCCCTTATATGGCTTAATCATCTTTTAATGCAACCTACTCTTCCAATACTGCCACACTACAGGATTAAGTTTCCAACACATGAACTTTGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAATTGGTAAGAAATAATGTGGTACTTTCTCCCACAACTTAATCAATGGATTGTAGGTGTAAAGTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCGAGTAAGCTCAGTGTTTTCATAGTAAAATCAGTTGGTGATTTGTTAGCATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCACATTTCCATCTTCTGGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACGTAGTCCTCACTTAACATCTCAGTAGATTCTTGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATGTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTGTTCACTGTGAATGTCATGGCCCAATAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATATTATCACCAGATGGGAAACAGGGTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAATATATTCACCGTATTCATAAAGGAATAAAAGATTTAGTTTAGACAAAACAATGCTATTCAATATATTCAGTTAATGTGGTATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAGAATTACTGTGGTGCTTAAAGGCTTTGACTCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGGAAGAGGTATAGAGAGGACAGGATAATAAGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGATGTCTACTCATTTCCCCTGTTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCATACTCATCACTATTTCCTGTTGCTGCTCTAGAGACTCTGCATCTGGTATCCAGGAGTTGGTATTGTCTTCATCTTGCCTTTTCAGTGTAAATCACCCTGTTTTTCCTCCTTATGCCCAGTAATAGGTGATCGTACATCCCTTCACAACAATTAGGACTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAGCTGAACTGGAAAGAGAATTGCTTTTGACATTTCTGCAAACATGTGATTCTTTTTAAATGTATTTCATTTGCAAGAGGAAATCTGGCAAAAGCATTTCTCATTTTTATGTAAGTGTTTATCTGATAAAGGGGAAGTTTAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCGGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCACCAGCAAATTGACCAGCAATACGTGATA 7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.012573, "nblock" : 64090, "sequence_length" : 4696, "blocks_per_base" : 13.647785, "nsample" : 64395, "trim" : [ 200, 64290 ] } 7: GGTATTGCTTCGTTCAGTTACGTGTTGCTCTTGCCTACATCGCTCTATCTTCAGCGTCTGCTTGGTGACATACCCATGAAACTATAATTTTTTAACAATTGGAAATTCTTCAGTTTTTATGTACAACAATTTTATTTTCTAACTGTGAAAATATATGGACATCTGATTAGTTTTGTATATATTTGGCATATTGTTTAGCAATATTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCGTATGTAATCATGCGGTGTGAATAATGACGGTTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTTGCTTTATTGTCCCTGCTTGGCTAGATATTCTTACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTAATTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTTCTTTACTGGTGATTTTGACATTTTGTTGTCTCATCACCTGAGCAGTATTGCACTGTATCCAGTGTTGGCAGTCTTTTATCCCTTATCCTCCTCTGTTCCCCCAGAACCCTCAAGTCCGTTAACATCATTTATGCCTTTGCATCTCATAATTATACTGATGAAGAGATGATGTTTGGACCATTCCTGGAGGTTACTTCACTTAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTCTTTATTCACTCTTTGATTGATGGGCATTTGGGCTGGTTTCATATTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTACCTAGCATATACGATACGTATCTATTTCGTATAATGACTTCTTCTGGGCCAAAGGAGTAGGTCTAAGATCTACTTTTAGTTCTTTAAGGAATCTCCACACCATTTCACATTGTGGTTATACTAGTTTACATTCCCATCAAACATTCTTAAATTGTTTCCTTTTCACCAGTCACACCAACATCTATTAGTTTTGATTTTATTAGGGGCCATTCTTTCAGGAGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATAGTACAGGCCATTTGTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAGGTTTTCTCCATCATGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCTAAGCTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCGAAGTCTTTGCCTAACCCAATGTCTAGAGGTTTTTCAACGTTATCTTCTAGAATTTTTATAGGGTTCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTCAGGGATCAGTTTCATTCTTCGACATGCTTGGGTTTACCGAATTATTCAGTGTCATTTGTTGATAGGATATCCTTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCAGTTAACATAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGGTATAGTTTGAAGTCAAGTAATGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGGGAATTGCATTGGAATTTGTGGGTGCTTTTGGCAGTATGGTCATTTTCACAATATTGATTTTACTCATCCATGAGAATGGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAATATATATATATATATATTTGCAGCTATTAATAAAGGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGTATACTTAGGGCTACTGATTTGTGTACATTAATTTGTAATCCTGAAACTTTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTAGGGTTTCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCCTGGCTAGGACTTCAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCCTTGTCTTTGTTCGATCGCACGGGAAGTAACAACTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTGTCACAGGTGGTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGGACTTTAATCATAAAGGGATGCTGGATTTTTGTCAAATATTTTTCTGTGTTTATTGGGATGATCATGTGGTTCTTGTTTTTAATTCTGTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGAGTTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTGTTATGTGTCCTTTCCTGGTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAGATTCAGCTGTGAATCCGTCTGGTCCTGGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTAGGCTTATTTGGATCTTCTCTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAATAACCAGCTTTTTGTTTTATCTTGTATGTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTCTTTTTCTGCTGGGTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGTGTGACCTTAGATTGTCTATTTGTGCTTTTCAGACTTTAGATGTAGGTATTTAATGTTATCAGTTTCTATGTAGGTATAATGCTATGGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCGGTTTTGATAGGTTGTGTCACTACTATTGTTCAGTTGAAAGAATTTTTACATTTCTATCCTGATTTCATTGTTCACCCAATGATTTTTCAGGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTGAAGATTTCTTTTTGGGGGTTGATTTCCAATCTTATTCCCTATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTATATGTTCTATATTGGAGAATGTTCCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTAGGTGAATGTTCTCCACATATCACTGTAAATCCGTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTAGGGCTCCAGTATTAGGCACTTACATGTTTAGGATTGTGATATTTTCCTAGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTGTGTCCATTTATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTGGAGGCTGAGTCTAGTGAGACGGTAGATACTTGGTTAGTGGTATCCATTCTGCCATTCTGTATCTTTTAAATTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTAAATCATTGCATTATTGTTTATAAGATCCTGTGAGAGGTTAAACGCAAGCAGACGCCGAAGATG 7: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.041418, "nblock" : 28890, "sequence_length" : 2268, "blocks_per_base" : 12.738095, "nsample" : 29150, "trim" : [ 200, 29090 ] } 7: CGGTGCGCATTCAGCCAGCCCTACCTCATTCACCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTACGCCCTTCCGCCGAATCGCCTTCACAAAGCCTTGTTAGTCCCACATGGCCAGTGGCCGGATTGTCGGCTCCGTTTCGGAATGGACGTGGATCTAGTGTGATTGTTGGGAGCGGATGGAAAATCAGCGTGCCTCTCCACCAATCGATCATCGGGTGGTGCGGTGGATGATCGTTACTCGCCAATACAGATGAGAATCCGTTGATTTTGCAGCTCGATTGGGATCGGATGGTGCATTAATAGACCGGGTATCTGAACGGTGATGAATGGGAGAGACAGTGGAACCGGCATTAGGCGGGATAATGGGCGGTTGGAAGAAATGGAATGATACGGCTCATTCAATTTCACTTCATTCACCGTCATGATGAATGGTGTCGCATATCGCTTTGATGGCATCAGTATAATTCCGCCTTCTACCGATATCGAATCCAATAATTAGTAGGTGACTCAGCTGGATCAGGATTTGACGTCGCGGGTGGATGGGATGGGGTTTCGGATATTTGGAATGTCATTAGCCACCTCGGCTGCAGTGTCGTTTCGGTGATGGTGGTGGGGGGTGTGAAATCACCTTCGTCTCGTTGCGCCGGGAGAGGCGTTCAGATGGGGGTGGAAACGGGATCTGGGTATCGGACGAAAGGAGTGGATCAGCATGCATCGATTAGGCTGCATTTCCGCTCGACATGAAACGGATGACTAGCGTAGATCATTGGTGATGGGTGTGGGAGGGTGACATCAGATGGACTTGTAGTCTGGGATTTGGGTCCTAAAGTGGGATGACATACTCTGCATATCGTCGGTGGATCCGCTTGTGCGTGTCTGCTGTCAGAGATTTCGTGCGTTCAATGCGGTAATGGATGGATAAATGGTGGATGGTGGTTCGTTGGCGTGGAGCGGGACCTTTCACTGGGATGATACCTCCGGTGCGGTTGAACCTCGGTGGGTGCGATTCTGCGGTGGATTCTCTCGTCGTGCGGGTAATAATGATTTCGACTGGAATCGGAGGTGTGGAGTGGGTTTTGGTGCCGGATGGGTGGAATTCTCTCGTTGGCGTAGATGAGTGCGCTCTGCCGGTTTGGATGGTCATTGGAAATGTGCATGATGGGGATCAGGATGGATGGTCGGTGTGGGCCCTGTGCTTCATGAGTCGGTGGAAGACGATCGGATCAATTGTTGTCATTTCAGTCAAATGGAATAATTTGAGAATTTAAATTCCCAATTGAATTAGCCTGGATGGACAGGTAGAAAGCCTATGAAAAGCCCATGAAGTGGATGACTGGATCAGTCCTACCAGAATCGTATTAGTATTTCATTATGTCCTTCCACTAATAGATATTATTGATTATCTCCGATAAAATATATGAATGGGTGTGGATTTGTCATAAATCATTGTATCCGTTATTATAAGGAAATCGTTTGGTTGAGGGTGTCGTTGGCTCACTTGTACTTAGTATTCGTATATTAGTCATTTCCCTTTATCATCCCCAGTGTATACAATCTTAGCATCATCGTAATTTCGTTCATTCACCCACATTTTTGATGGCGTAAATCTCATAGAATAGATGGGTTGGGATTTCAGATGTCTGCATGGCCCGGTCAGTATGATGAACGGAGTATCAGATCATGAATCGGATGGTGGATGGGTCGGCCGATTAGATGGTTGTATTATCTCCCAAGAATGGACGTGGAGTGACAAATGGTAAGATGCAAGATGGATTGATACCAGCTTCATCAATCTAATTTTTATAGAATAAGAAAGTCGATCTGGGTGCCGACCGTGAACAGATTTGGAACGCTTGTCAGCCTTACTTATTCTCCAGATAGTGTATAGGTGAATGGTACAGGATAGAATATATGTGCCAGCTCAATCAGATCGTAAATCGTTATTCTTCAAATATAGTCTTAGTCATATTTACTCATCTGACCGAAATCAGATATCTTCAATATAGCGGCAAGTGGATAATGACAGTGTAGATGGTGGATGATAATGGAATGTTACTATCAATGGCGAATGAACCTTTCGAGAAATGGTAGAGCTAGTAGGTGGGAGAATTTGGCCTCCGTACCAGATAAATTTCAAATAAATTCATCATGGGCGGCTGGTGAACGCATCAGTGGAAAAACATATGGATGGATGGGATCGTATCGATGGTGAGCTATCAGCGAATCAGTGGCATTTCCAATCTCATGGGCGGGTGAAGGT -19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 57.38 sec +19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 63.74 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 62.74 sec +Total Test time (real) = 75.23 sec make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse2' - rm -fr -- /tmp/dh-xdg-rundir-YAUJGFih + rm -fr -- /tmp/dh-xdg-rundir-oHIv8W2M dh_auto_test --builddirectory build_plain - cd build_plain && make -j6 test ARGS\+=--verbose ARGS\+=-j6 + cd build_plain && make -j5 test ARGS\+=--verbose ARGS\+=-j5 make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_plain' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j6 +/usr/bin/ctest --force-new-ctest-process --verbose -j5 UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/build_plain/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/scrappie-1.4.2/build_plain/DartConfiguration.tcl Test project /build/reproducible-path/scrappie-1.4.2/build_plain @@ -303338,12 +303374,6 @@ 5: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "raw" "--model" "rgrgr_r941" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" 5: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain 5: Test timeout computed to be: 10000000 -test 6 - Start 6: test_rawrgrgr_r10_call - -6: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "raw" "--model" "rgrgr_r10" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" -6: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain -6: Test timeout computed to be: 10000000 1: 1: 1: CUnit - A unit testing framework for C - Version 2.1-3 @@ -303722,28 +303752,38 @@ 1: tests 71 71 71 0 0 1: asserts 506 506 506 0 n/a 1: -1: Elapsed time = 4.045 seconds - 1/19 Test #1: unittest ......................... Passed 5.64 sec -test 7 - Start 7: test_rawrnnrf_r94_call +1: Elapsed time = 5.277 seconds + 1/19 Test #1: unittest ......................... Passed 6.11 sec +test 6 + Start 6: test_rawrgrgr_r10_call -7: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "raw" "--model" "rnnrf_r94" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" -7: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain -7: Test timeout computed to be: 10000000 +6: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "raw" "--model" "rgrgr_r10" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" +6: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain +6: Test timeout computed to be: 10000000 +5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.278788, "nblock" : 16158, "sequence_length" : 9559, "blocks_per_base" : 1.690344, "nsample" : 81106, "trim" : [ 200, 80990 ] } 3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.325922, "nblock" : 16158, "sequence_length" : 9258, "blocks_per_base" : 1.745301, "nsample" : 81106, "trim" : [ 200, 80990 ] } 4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.295786, "nblock" : 16158, "sequence_length" : 9512, "blocks_per_base" : 1.698696, "nsample" : 81106, "trim" : [ 200, 80990 ] } -5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.278788, "nblock" : 16158, "sequence_length" : 9559, "blocks_per_base" : 1.690344, "nsample" : 81106, "trim" : [ 200, 80990 ] } 2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.273349, "nevent" : 16119, "sequence_length" : 9415, "events_per_base" : 1.712055 } +5: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAAGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCCATGGTTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGCTTAATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTATTTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCACATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCCAAAATATATATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCAGCTTGTTTAAACAAATGAAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTTTGCAAGCATGGGGAACCACCCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGAGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGACCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTGTTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGAGGCCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC +5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } 3: GCAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTATGTCTTAACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCAACTACTCTCCGGGAGACTGAGGCAGGAGAATCCTTAAACCCGGGGCAGGGTTGAAGTGAGCCGAGGTCTCACCTCATTGCACTCCAGCCTATGGGTGACAGGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAAATCAGTTTCCCGTAATTATTTTAGAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTAGTAGGTATCTAATAGAAAGCGTTCATTTAAGGAATAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATGTATTCTGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTTTATTTCCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAAGAAGGTAATATAAAAATGGAGTATGAACAAAATTGAAATCCTTTGCTATGAAGTTGAAAATACTAGTTTGTACATGTAAGCCTGTACGATAATAAAAATATAAATATATAATTTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTAGTTGAATATTTCACTTTTCACGTACAACTTTCTCACAAAGTTGATAGTGTTTATTTCTATTTTTGTATGTGCAGCCTCATATTATTTGTCTTTTCTCGTTAGAGTATCATTTCAACTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAACACAAACGTTGTTGAAACTTGAGGTAGAATAAAATATTAAATATTTCTTTGCCTTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCTGGAAATGCAAAATTAGAACATGCCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTTTCCTCATCTTCCCTCATTTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTAGCAAGTTTTTCATTCATTGTTTTTTTTCCATGTATTTCTGTAAGCCTCTTGTTGCAATCTTCACCTTGGCGTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGGTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTTTTCTGCAGTACATAGTGCGTAATGGCCTCAATGGTAGCTACTGTATTGATGGAAGTATTGCCATACTCCCTTCATATCTAAACCAGAGATGGTGATCTTTCTTAAGGGCCGGATAACGAACATTTTTGTGCTTATGGACCACGTAGTTTCTGTCTCACCTGGCCCGGCTCTACTGTATTGTAGAAGCAGCCATGGGCGTCTCTATGTGAATGGGCGTGACTGTGTTTTCAAAAGCAACAGTATGTGCAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTGGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCGCTCTTCCTGTTGCTTTGGCAATGCTTATTTATTTTTGCCAGGTTTTCTTCCTTATACTCTACAAAGGTCTTTCTGATCCTCTGAGCTGTATCAGATGCCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTATGTTTCCCTGACTTTGGGTGTGAGTTCTTGAAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTATTAGGTTGTAGATTTCGAGCTTTTGATCTCAAAGATCAGCTGTGCATTTAAAAAACACATATGCCTGGGCCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCTAGATAAGAAGTGCCCCCAAAATATATATTGAATAAAAAGCAATAAAACAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTATTTACTAACTTCTGATACAGACTCAGACAGGCACTTAGAATAACTGCCTTTAAAAGTCATGGATGTTCAAATGCCGTAATGGAACACTATTCACCAACAGAGATGTTGTGGACTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAAAGTGAGTTAGCAAATGCTGTTAGAAACTGTCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACAGTTCCATTAGTATTTGTGCCAAGTGCCACAAGTTATCTTCCTCAAGAATGAATCTGCTTTTGTGATCTTATTTGAGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTAAGGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGCTTCTAGTTTTTTTGTTTGTTTGTTGTTTTTAAATGGGGTCTTGCTCTGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGGTCTCACTGTGTTTCCCAGGCTGATCTTGTGAACTCCGGTCCGTAGTCACGCCCACCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCTTATGCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTCTTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCTATACTGTTGCCCAGGCGGTCCTAGACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATCCTATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGACCATAGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTGTAGCCTTAGAGAGGGCTGTCCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTGAGGGCCACTGAGGGTCATGGTGGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGAGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTCTTCTTTACTTACAGTGTTTTTGGTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACGGCGTGAGGGCTGCTTTTGGAACAAATTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTGAAACATTTAATGACTTTGTTCTTGTTTAAATAAGTAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATTGTAAATATTTCATTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATATTCCTTATCAAGGAAGCTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATATGATAAGTGATTGTCACCAGATGCAAAATATTGACTGTGTGTCAATACAGCTTCATGAAATTATTAACATTGCCTTGAGACAGACCTAAATGAATCAAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCCAGATAGAGATTATATAGAAGTAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTAGAAACACTTCATTTTAATTTCTTAGGGAGTGGATAGGAAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAAGACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTTTGCAACATGGGAACCACCCCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGAACGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAATCTCATGTCGGTTCCCTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTCCAGCAATTAGCCCAAAGTCCAAGTCCAAAGTCTCATCTGAGATAAAGGCCAAGATCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAAGGGCTGTAGGCCCCAAAGTCTGCAATCCAACTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCGCATCCAGCCCACTGATGCAAGTGGGCTCCCCACAACCTCATGCGAAAAGCTCTCGACCTCTGGCTCCATGCCTCATCCAGCCCACTGATGCAAGAGTGGGCTCCAGCAATCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTACCTCTCTGCTGTTTTCACAGGCTGGCGTTGGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCTGCCATTCTGGGGTCTGGAGGATGGTGGCCCTCTTCTCATAGCTCCCACTAGGCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCATAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCAGGCATTTCTATACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTGCTGTGCACCACATGTAAGCCGCCAAGGCTTAGAACTTACACTCTCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCAAGCAGCAAGGCCCTGGCCCACAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATAGGCTGCCACGTGAAGACCTTGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAAATGGGTTTTTTCTTTCTACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGGAATCAGCCAGGTCACCTGTTGAGATGCTTTGCTGTAGAAATTTCTTCCACAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAACAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCAACCATCTAACAAGTCTCTAGGAAATTTGCAAACTTTCCACTTCTTCCTGTCTTCTAGGCCCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCGAACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGTGGAGGTTAGGAAGTCAAGGTTGAGGTCCCTACATCTAGCAAGGGCTTTCTTGCTGCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAAACAAGTGTAGAGATCCTTTTATAATAAAACCATTCTCAATAACCCCTCCTTAGTAACAATGAATTATTCATTCATGGGGATAGAGCCCTTATGTGAAGCAATCATCTTTTAATGCAGCTTCTCTTCCAATACTGCCACTACAGGATTAAGTTTCCAACATGAACTTTGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCGCCGTTACAAATTAGTGAAATAATGTAGTACTTTCTCCCACAACTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTATATTTGTTAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTCTCTGTAATTATAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACAGTAGTCCTCATAACATCTCAGTAGATTCTTGGAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTATTCTGTAGATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATTATCACCAGATGAGGAGAAACAGGGTTTTGCTTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCATATTCACCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGGTGCATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTGTAAAGTATTGACAGTAATATTATAATAAAATGTCATCACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTGCCCAAGGCTTTGACTCTAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGGTATAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCCGCGCCTCATCCTATTTTCCTGTTGCTTGCTCTAGAACTCACCATCTGGTATCCAGAGTTAGGTATTGTCTTCATATTGCCTTTTCAGTGTAGAATCACCCTGTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCGGCCATCCCTTCACAACAATTAGGACTTTCACCGTTTTTAGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAGTGCTGACATTTCTGCAAACATGTGATTTTTTAAATGTATTTCATTGCAAGAATCTGGCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGAAGTTTAAAATATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTAACCAGCAATACGTAGT 3: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.319873, "nblock" : 12818, "sequence_length" : 4612, "blocks_per_base" : 2.779271, "nsample" : 64395, "trim" : [ 200, 64290 ] } 4: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCATGGTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGAAATAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGTATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTCACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCAAAATATATATTGAATAAAACAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTAATGTGTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCGCTTGTTTAAACAAATGAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGAGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTGCAAGCATGGGGAACCACCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGGGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGTTCCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGACCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC 4: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.179309, "nblock" : 12818, "sequence_length" : 4723, "blocks_per_base" : 2.713953, "nsample" : 64395, "trim" : [ 200, 64290 ] } -5: GTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGAAGAGCTGAGGCAGGAGAATCCTTAAACCCGGGGAGGGCCCAGGGTTGAAGTGAGCCGAGGAATCTCACCTCATTGCACTCCAGCCTGCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAGAGAGTATTATTAAAAAATCAAGTTTCCCGTAATTATTTTAGAAAATGTAGACTATAATTTCCTCCAAAGAATAGATAATGTCTTTTTACTGTTATTTGTTCTCTTCGAGTACCTCCATGGTTTTCAGCATTTGAAGTAGGTATCTAATGAAAGCGTTCATTTAAGAGAATGTCAGTACAAAACTATTTGTAGTAACTAGACCAGAGAGAGACCTTTGACAATATTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATCTGCATTTATGCAGCATCAGTGAGTATACATAGTTCAAGTAGTCTATAAGTTTTTCCCTAAGAATGAGACCATGAAATTCCTTTTAATCTTTTTGATTGCTTAATGCTTTATTTCCTTAGCATTAAAATGTATAAGTGAAGAAGTTGTGGCATCGCAGGGGAGATAAAGAGTCTTTAAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGGAAATCACTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAATATATAATTTATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTCACTTTTCGTACAACTTTCTCACAAGGATTGATAGTGTTTATTTTCTATTTTTGTATATGTGCAGCCTCATATTATTTTGTCTTTTCTCGTTAGGAAACATCATTTCAGCTTTCCATCCATTTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAAACGTTGTTGAAAGCTTTGAGGTAGAATAAAAATATTAAATATTTCTTTTTAGTGTGTATAATGTTGGTACTGATGGTGTGAATCTCCTGGAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGGTCTACTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTTAGTAAATCACATCAATAAACAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGCTGAGTTTTTCATTCATTGTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCAGCAGCTGGCTAGGCCATGCAAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCTGTCTGCAGTACATAGTGCGTAGTAAGCACTCAATAGCCAGCGTACTGTATTGATGAGTATTGCCATACTCACTCATATCTAAACCAGAGATGGGCAGTCTCTTTTCTTGGGGCCGGATAACGAACATTTTGTGCTTATGGACAGCCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAAGAAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTGTGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTACTCACTCTTCCTGTTGCTTTGGCAGATGCTTCCCATTTATTTTGCCAGGTTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAGGCTGTATCAGATGCCCCCCTGTTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGGTTACGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAGTATCCCCAGCACCAAGCATTACTTGGCATGTATTAACTTGTGGATTTCAGCTATTAGGTTGTAGCCAGATTTCGAGCTTTTGATCTCAAGATCAGCTGTGCATTTCAAAAACACATATGCCTGGGCTATATATGGACTTCAGAATCTGAGTGTACAAGGTCTTGGTGGGCATTTGCATTTCAGAACCCCCTGAATAAGAAGTGCCCCCCAAAATATATATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTTATCACACTGTAGTTTCTGCTGTTACTTAATCAGTGTAATATATGATTATTGTTACTAAACTACTGATACAGGACTCAGACGAAGGCACTTAGAATATAACTGCCTTTAAAAGTCATGGATGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGGAGTAGAGAAAGTGAGTTAGCAAATGCTGTTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAAGAGAAAGAAAAAGCCTCCTTGTGGATAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTAGTATTTGTACCAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTGTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTAAATAGAGGGCTTCTAGTTTTTTTGTTTGTTTTGTTGTTTTTAAGTAAGGGGTCTTGCTCTGTGTGCTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCGCCAGGCCTGTCTAATTTTTTTACTTTTTAAGACAGAGAGAGTCTCACTGTGTTCCCAGGCTGATCTTGTGAACTCCGGTCAAAATGGTCACACTCCCACCCATCCTAGAAACACTGGGATTACAGGCGGGAGCCTTATGCCTAGCAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAAATTCTTTTTTTTTTTTTTTTGACTTAGTAAACGTTTAAATTTAAAGTTATAAGTGTAGAGAGAATTCCTATTAAGATTTTTAACATTCAAATATGCTTGATTTCTTTTTCTTTTTTTTTTTTTTAATAGTGACAGAGGGTCTCGCGCTATACCTGTTGCCCAGGCTGGTCCTGGAACTCCTGACCCAAAGCCTTGGGATTACAGACATAGATGATCCACCATGCCTGGCTGATTTCTTTATAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGAATTTCCATAAGAAGAAATGGCAAGCTGAAAGAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATGGGAATCACTAAGGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGAGGTGTAGCCTTAGAGAGGGCTGTCCAGCTTCCCAGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCCAGTGGCTTCTCCATCCAGAGACAGAAATAAGAGAGTCCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTTAGAGAAAGGCAAATGGAACTATCCAGCACACAGCCATTATTGTGTTTGTGTGTTTTTCTTCTTTACTTACAGTGTTTTTTGGTTTTTCGTTTTCAGCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAGAATTGAATCATCTTAGTTCTTCAGGATGGATGTGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCAGCTTGTTTAAACAAATGAAAAAAACCACAGCTGAAAATCTTAAAGATCAGGCTGTATATATATGAAGTATTCATTTGATTAGATCATCCTCTTATCTTGAAAGGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAGATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCAATACAGCTTCATGAGGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGAGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTAGTTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATAGGTTAGGCAGATTGTGGAAGGTCTAAAGAAAACTATACTGGAAACACTTCATTTTAATTTCTTAGGAGTGGATGGAGATAAGTAAAGACTTTAGGTAACAAATATGCCTGTAGTTACTCCTGGAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAGGAACTGGATAGTTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGCAGGGGAGGCCTCAGGGGAAACTTATAATCTGGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCCTTATAAAAATCGTCAGATCAGATGTAGGCTCACTATCACAAGAACAGCTTTTTGCAAGCATGGGGAACCACCCCCCCAAGATTCGACCCCTTACCTCCCACCTGGTCTCTCTCCCTTACCTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATAGGACGAGAAGCCCTGACCACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTTCACATTTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCCAAAGTCTTGCTCATTTCCAGCAATTAGCCCAAAGTCCAAGTCCAAGTCACTCATCTGAGATAAGGCCAAAAGTCCCTTCCATCTATGAGCCTATAAAAATCAAAGAAGTAAGTTAGATTCTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCCAAACAAGGGGCTGTAGGCCCCAAGAAAGTCTGCAATCCAACTAGGGCAGTCATTAAACTTTAAAGGGGAGTTCAAATGATCTCCTTTATGACTCCAGCCCTCGCACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGTGGCTCCATGCCTCACATCCAGCCCACTGATGCCAAGAGTGGGCTCCATGGCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCGCCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGGCCCGAATCCTGCCATTCTGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTAGGCCCAGTGCCCCGAGTGGGGACTGTAGGGGGTCCAGCTACCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCACTGAGGCCTGCCTACAGCCAGCTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAGCAATTAATTCTTGATTGCTGCAATGCACCTGACCCCCACATGTAAGCCGCCAAGGCTTGGGAACTTGCACTCTCCTGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGAGACTGCCAAGCAGCAAGGCCCTGGCCCACAAAACCATTTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACGGAGACATTTCCCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGAATTTCTACTCCCAGAAATGGGTTTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGTAGAAATTTCTTCCACCAGATACCCTCGTCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAGGAATACTTACCCTTCTCTTTGCTAGAGCATGGCAAAGAGTCACTTTTATTCTAATCCCCCAGGTGGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTGAGCCTCCATCCTGTTTCCAACCTGCCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTGGAGGTTAGGAAGTCAAGGTTGAGGTCCTACATCCTGGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAAGGAGGATGAGAGTGAGAGCAAGGGTGGCAGAAGTCCTTTTATAATAAAACCCATTCTCAATAACCCCTCCCTTGGTAACAATATTGAATTGTTCATTCATGAGGGATGAGAGCCCTTATATGACTTAATCATCTTTTAGTAAGCTTCTCTTCCAATACTGCCACACTACAGGATTAAGTTCCCAACACATGAACTTTGGGGGACATAGTCAAATCCTTGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTGTTTGTTTTTTGTTTTTTAAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAAATTGGTAAGAAATAATGTGAAGTACTTTCTCCCACCTTAATCAATGGATTGTGGGTGTAAAGTTTTTCATTTTGCTGTATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTCATAGTAAAATCAGTTGGTGATTTGTGCTTATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCTGCTACTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTGAGGCCAGACTTTAAAATCTCTACTGAAAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTGTATTTCAGTTTACTCTTGTATTTGGCTTCACCGCAAAAGTACGTAAGTCCTCATAACATCTCAGTAGATTCTTGGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCCAACAATATTAAGCGAAAGGGTTACTAATTGATTCTACTGTGAATGTCATGGCCCAATAAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAACCACTTATTCACCCGTATTCATAAAGGGAATAAAGATTTAGTTTGAGCAAAACAATACTATTCAATATATTCAGTTAATAATTAATTTCAATTTTATTGGTTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTTGTAAGTGCTTTGGTATAAGCAGTTTATACCTACCTAATTTTATGTTTATGCCAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAGCATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGAGGCCACTGAAATTACTGTGGTGCCCAAGGCTGACTCCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGAGAGGTATAGAGAAGGGACTGGGATAATAAGTGTAGCTATTGGTGGCCTATTCTGGAAGTTAACCTCACACAGTCTTACTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCGAGATCTATCTTCTTTGGTGGAATGTCTACTCATTTCCCTATTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCGCATACTCATCCTATTTTCCTGTTGCTTGCTCTAAGAACTCACCATCTGTTATCCAGAGTGCGTGTTATTGTCTTCCTGCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCGCCTTATGCCCCAGTAATGGGTGATCATGCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAAGATTTAGAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTTTGACATTTCTGCAAACATGCTTGATTTTTTAAATGTATTTCATTTGCAAGAGGAAAATCTAGCCAAAAGCATTTCTCATTTTTTTTATGTAAGTATTTATCTAGTAAAGGGGAAGTTTAAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCAGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAATTGGCTCAGCAATACGTAAC -5: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.168864, "nblock" : 12818, "sequence_length" : 4746, "blocks_per_base" : 2.700801, "nsample" : 64395, "trim" : [ 200, 64290 ] } -4: ATGAAACTATAATTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTATTTTCTAACTGTGAAAATATACTTGGACTGATTAGTTTTGTATATTTGCATATTATTTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAATTTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGAGATGATGTTTGGTTTTCATTCCTGGGGGTTACTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGCTGCTATAAACATATTTATTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA -4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } -4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG - 2/19 Test #4: test_rawrgrgr_r94_call ........... Passed 19.41 sec +5: ATGAAACTATAATTTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTTATTTTCTAACTGTGAAAATATACTTGGACCTGATTAGTTTTGTATATTTGCATATTGGCTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAAATTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATATACTGATGAAGAAGAGATGATGTTTGGTTTTCATTCTGGGGGTTGCTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTTATTTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAAAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCGCCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } +5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG + 2/19 Test #5: test_rawrgrgr_r941_call .......... Passed 25.04 sec +test 7 + Start 7: test_rawrnnrf_r94_call + +7: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "raw" "--model" "rnnrf_r94" "--threads" "1" "/build/reproducible-path/scrappie-1.4.2/reads" +7: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain +7: Test timeout computed to be: 10000000 +3: CTTCCGTTCGAGTTACGTGTTATCTTTGCCTGCAATCCATCTATCTTCGGCGTCTGCTTGGGTGACATACCCATGGAAACTATAATTTTTTTAACAATTGGAAATTCTTCAGTTTTTATATTTAACAGTTTTTGATTTTCTAACTGTGAAAATATATGGACCTGATTAGTTTTGTATATTTGCGCAATATTGGCTAACAATATTTTTCTGAATTTACTTACTAATTCTCCAGCATAGATTCTTATGGGACTGTCATATATTAATCATGCGATTATGAATATGTGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTGCTTTATTGTCCTGGCTGGAATATTTCGCACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTTAGTATTTCAACAGGTTTTTGGGAACTGGTGATGTTTGATTACATGGAATCACGGTTCTTTACTGGTGATTTGACATTTTGTTACCATCACCTGAACTTGGTATTATCCAGTGATTGTAGTCTTTTATCCATATCCTCCTCACCCGTTTCCCCAGTCCTCAAGTCCGTTAGCATCATTTGCCACCTTTTGCATCCTCATACTGATGAAGATGATGTTTGTTTCATTCCTGAGTTACTTCGCGAATGTGATCTCCATTCCATTCAAATTGCTGAAAATGCATTATTTCGTTCCTTTTTGTGGCTGGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTGATGGGCATTTGACTGGTTTTCATATTTTTTCCAATTGCAAATTGGTGCTGCTATAAACGCCATTTTGGCACTGTACATTACGTATCTATTTCGTATAATGGCTTCTTCTGGGCCAAGGTAGGTCTAAGATCTGCTTTTAGTTCTTTAAAGATCTCCTTTACGGCTAATGGTTATACTGGATTTACATTCCATCAACATTGTTAGGTGTTTTCCTTTTCACCAGTCACAACATCTGTGTTTTGATTTTTTTATTAGGGGCCATTCTTTCAGGGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTTTAATAGGTTTGAGGCCATTTATATCTTCTTTGAAATTGTCTATTCATGTCCTTAACTTTTTGATAGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAATTTTCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTAGTTGGGTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCAGAAGTCTTTTACTAACCCAATGTCGAGGTTTTTTTCAACGTTATCTTCTAGAATTTTTTTACCGGGTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTGGATCCAGTTTCATTCTTCGACATGGCAGGTTTGAGTGATGTCATTTGTTGGTCGGGTCCTTTCCCCACTTCATATTTTGTTTGTTTGTTGAGATCTTGAGATTGGCTGTACGTGTTTAGCTTTATCTCTTGGTTCTCTATTCTCTTCATTGGTCTTATGCCTGTTTTTTATACCAGTACCATGCTGTTTTTGCTGATGGTGGCCATTATAGTTTGAAGTCAAATGTAATTACCTCAATTTGTTCTTTACTTAATCTTTACTTTGGCTGGGGCCTCTTTTTGGTTCCATACCGATTTTAGGATTGTTTTTCTCATTCTGTAGAATATTAGGTAGTATTTTTGATGAGTGCATTAGATTTGTAGGTACTTTTGGCGTATATGGTCATTTCTATGTGATTTACTCATCATGAGAATGGATGTATTTCCATTTGTTGTGTATGATTTCTTTTTTTCAGCAGTGTTTTGTTGTTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAGTATAGTCAAATATATATATATATATATATATTTACGCTAATATAAAGTTGGGGATTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGGCTATAGCGGGCTACTGATTTGTGTACATTAATTTTGTATCTAGGCTTTGCTGGAATTCATTTTAACAGTTCAGGAACTTTTAGTTTGGAGTCTTTTGGGTTTCTAGGTATACGATCATATCATCAGCAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTACTCTGGCTGGGACTTTATGTTGAAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCCGCACGGGAAATGCTTTCTTTTTCCATTAAATGTCTAATGTTGTTGGCTGTAGGTTTTGTATCACAGGTGGTTTTTATTACCTTAAACGCCTTCTACGTAGATTTTACTGGGGACTTTAATCATAAAAGGATTACTGGATTTTTTTTGTCAAATATTTTTTTCTGTGTTTGTAGAGATGATCATGTGATTCTTATTTTTAATTCTGTTTTTATATTTATATCATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCCTAGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTAATACGTGGATTTGGATTCAGTTAGCTAAGTATTTTTATTGAGATTTTTGCATCGTTAATCAGTGATGGGTCTCAGTTTTATTTTTTTGTTATAATGTCCTTTCCTGGTTTTGATATTACAGTGATGCAGCTTCATTGGATGATTTAGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGGATTGGTACCAATTTTTCTTTGAATACCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAAACTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGTTGTATCTTTCAAGAATTTATCTCCTCTGAGTTTTTCGTTTATATTACGCCCACAGAGTGTCATAGTAGCCTCCGTGATCTTTTGTATTTCTGTATGCTGAATTTGTAATATCTCCCATTTCATTTTAAGTAAACTTATTTGGATCTTCTCTTTTTTTTTTTTCTTGGTTAATCTTACTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTGTTTATCTTTTTTTTTTTTTGTATATTTTTGTTTCAATTCCGGCTTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTCTGCTGGGTTTAGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGTGTGACCTTAGATTGTCTATTTATTACTTTTTCAGGGCTTTAGATGTAGGTTAATATTCTCGATTTCTATTATGTAGGTATAATGCTATAGAGATTCCTATTCTGGTGTATTTCGAGATTTGTTTTCAGATTTGGGGAGCTCCTTTGCTTGGTTTTGTAGTACTCAGTATTTGTCTGAAAAATACTATCTTCCTTCATTTATAAACTTAGTTTCCTGGATACAAATTCTTGGCTATTTGTTTAGTTTAAAGACTACCGGTAGGACCCCAATCCACTTGTCTTTGCTGTATCCCAGTTTTGATAGGTTGTGTCCTACTATTGTTCAGTTGAGATTTTTTATTTCTATCTGGTTCATTGTTCACCCAATGATTTTTTCAGGATTGTTAATTTGATGTATTTGCAATGTCTTTGAAATTTCTTTTAGAGGTTGGTTCAATCTTAATTCCTATAGTCTGACATAGTACTTGTCATTTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTAGCCTATATATATTTCTATATTAGAGGAATGTTCCATGTGCTGATGAATAAGTCTTATGTTTATTTGTTATTGCGTCTTCTCCCTTATCCCTGTAAATCCGTTGTTGTAAGGAGTGTAGTTTAAAGTACATTGTTTTTCTTTGTTAACTTTTCTATCTTGATGATCTGTATCTAGTGCTGTCATTAGATGCTAAGTCCCTATTGCTGTGTTACCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTGGGGCGCTCAGTATTAGGCACCCATGTTTAGGATTGTGATATTTTTCGTTCGTCCTTTTATCATTATAATGTCTCTCTTTGTATTTTTTACCGGCTGTTGCTTCGTTTGTTTTGTCTGATACAGAATAGTTATTCCTGCTTGCTTTTTAGTGTCCATTGCATGGGATATCTTTCTACCTTTACCGTATATGAGTCCTTAGTATTGGTGAGTCTAGTAGAGACAGTAGATACTTAGTTAGGTAATTCTCCATTCTGCCATTCTGTATCTTTTTAGGTGGAGCGTAGGCCATTTATTCAGTGTTAGTATTGAGATGGTACTATTCTATTCATCGCGATATTTGGTGCCTAGATACCTTGGTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGAGGATTAAACGCAAAAACGGAACGCCGAA +3: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.590575, "nblock" : 5778, "sequence_length" : 2399, "blocks_per_base" : 2.408504, "nsample" : 29150, "trim" : [ 200, 29090 ] } +3: TCGGTGCGCATTCAAGCCAACCCTACCTCCTTCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTCGCGCCCCTTCCGCTTGAATCGCCTTCACTAAGTATGTTGGTCCCACATGATAATTCGTAGATTGCATCGACTCCGTTTCCGAATGAACGTGGATCGGCATTTCAGTAGTAGGCTGGGGCGGATGGAAAAATCAGCGTGCCCTCTCCACAATCGATCATCCGTTTGTCGGCCGGTACGGTAGGACCAGTCGAACTACTCAACCATTACCTAGATGAGGAATCCGTTGATTTTGCATCGTTGGGATCAGTTGGTAAATTCAATAGAATAGTTGTCCTAGACAGGTTGATGGATGGGAGAACAAAGCGGGGCCATGGGCGGGATAATGGGCGGTTGGAAATGGGATACAGCTCCATTCAGCCCTACACTTCCATTCCTCGTATGCTACGATGAATCAGGCCATGCATATCGCTTTTATTGGCCATCAGTATAATTCCAGCCTACCGATATCGATCCATCCTAATTAAGTAGGTGGCTCTCAATGGATCAAGAGATTTAAACATCACAGGTAGGATGATCGTCAGGACTCAGACCTTCAGGAATAATCATGCGCCACCTCCTTTCACATGTCATTCAGTGTGGTATGGTAGGGTAAAATCACCTTCATTCGTACTTGCCTTCAGGCGATTTCAGATAGGTTTGAAACGAATCTGTTGGTATCGGACGAAAATTGGATCAACATACATCAGTAAACTGCATTCCGCTCGACATAGCTCTGGACTTTAGCATAGATACATTAGGCTGGCATGAATTGTGGGAGGAGCCCTCGGAATGGACTTGTCTGGGAGAATTTGAGATCCTAAAAGTGAGATGGCACTACTCTACTCCTCGTCGATGGATCCGCTTGTACAATACAATCCAATTTCTAGATGAATGAAATAGTAGGTGGTTGTGGGCCAGCATGGAGCAGGACCCTTCACTACAGCCACCTCCGATGCGGGGTTCATTGAGGTGCATTCTGCGTGCCTCTGTCGTGCAGGTACCTTAATAAGCCGGGAGGCATTTCAAAGCTGAATCAGGAGGTAAAAATGAGTAGGATTTTAAGCCGCCGAATGGGAAGAACATCCTCTCGTTACCGGCGCAGAATGCACTTCCTGCCGGCCAGGCCAGTCAAAATGTACGCCAGCCAGGAATCAGGAATAAAGACTCAGTCAGTGAACGGCGAGCCCGCGCTGTGCTTCCGCCACAGTGGTAGAAAAACGTCCAGGATCAAATTACGTATTTCAATTCCGTGGAACAATTTGAAAGGCTAAAGCCTAGTAAAATTCAACTGGACGGACAGAGCCCGGAAAAAGCCTCCCTACCCCACTTCAAAGCGGAATGAACGCGGGCTCAAACCCTACAAAATCGCGTATTAAGTAACATTTCGCCCGTACTACACTATCAATCAGCCATTACCTCCGTAAAATACCAAATAGGTGAGAAAATTTGCATCCGCCATCGTACAGCCATCAAATTAGCCCACTCAAAATGGAATTTTGGATGAAAAAGGTATCATTCGACTCACCCCCTTACTTAATATTACGCTGCTCGCGTAAATATTTCCCTTTATACCATCCCAATGCATGCCCAATGCTTAGCATCATGTATTTCGACTCAACACCCACCATGCGCGATGGCGTAAATATAGAAACCAGATACGAGATTTCAGGCATGCCACGCCAGCGGTCAGTATAAACCGGGCAAAATCAAATAGCCGCCAGGCTCCGGACGGTGAGGCGAGATACCGGGTAGATGGGCTGGCGCGCTACATACTCCCAGAAATAGGGCATGGAAGCGCTCCATCGGCGCGATACCAAGATGGGCCGGCACCACTTCACGCCAGCATCTAAATTTTGCCTCGATAAAAGAAATCGTCCCCGACGGTACCGACCCATGAACAGGCATTTTGTTGCCCCGTCGCGCTTGCCACCCATTCCAAAATAGGTGGCGCCAGTACGAAGCGGGCTGAGCTAAACGCGCGCACCGCTCAATGAATCGCATCATCAGCCTTCATCCTCGTACCAGATACCATGGCCTCCTCCACAGCCCGAAAATAGCAAATATCCCTTCAATATGCGCTGATGGGCTGGAAACAGTATGAATAGGCGGGCGGGCCAATGGAATGGCTATCAACAGCCAGCGAATGAACCGCTTCCAATAGGTAGAGCTAAATGCGCGGAGAAATTTGGCCTCCCGTACCGGCCAAACCTAATCAAAATTCTCCTTCGACGGGCAGCTACAGGCGAACAGCGCCAGTGAAAAACATGCGGAGCGGATGGGGTCCGTATCGCTTCGACGAAACTGCCTCCAGCAGGAAAATCAGCTGTCTCATGAAGCGGTGCGCATGAAA + 3/19 Test #3: test_raw_call .................... Passed 25.68 sec test 8 Start 8: test_event_table @@ -316149,23 +316189,13 @@ 8: 12394 64075 0.000000 0.000000 1072576662 8: 12395 64078 -2.000000 -0.000000 1073238564 8: 12396 64083 0.000000 -2.000000 1072952450 - 3/19 Test #8: test_event_table ................. Passed 0.16 sec + 4/19 Test #8: test_event_table ................. Passed 0.19 sec test 9 Start 9: test_mappy 9: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "mappy" "/build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa" "/build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5" 9: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain 9: Test timeout computed to be: 10000000 -3: CTTCCGTTCGAGTTACGTGTTATCTTTGCCTGCAATCCATCTATCTTCGGCGTCTGCTTGGGTGACATACCCATGGAAACTATAATTTTTTTAACAATTGGAAATTCTTCAGTTTTTATATTTAACAGTTTTTGATTTTCTAACTGTGAAAATATATGGACCTGATTAGTTTTGTATATTTGCGCAATATTGGCTAACAATATTTTTCTGAATTTACTTACTAATTCTCCAGCATAGATTCTTATGGGACTGTCATATATTAATCATGCGATTATGAATATGTGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTGCTTTATTGTCCTGGCTGGAATATTTCGCACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTTAGTATTTCAACAGGTTTTTGGGAACTGGTGATGTTTGATTACATGGAATCACGGTTCTTTACTGGTGATTTGACATTTTGTTACCATCACCTGAACTTGGTATTATCCAGTGATTGTAGTCTTTTATCCATATCCTCCTCACCCGTTTCCCCAGTCCTCAAGTCCGTTAGCATCATTTGCCACCTTTTGCATCCTCATACTGATGAAGATGATGTTTGTTTCATTCCTGAGTTACTTCGCGAATGTGATCTCCATTCCATTCAAATTGCTGAAAATGCATTATTTCGTTCCTTTTTGTGGCTGGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTGATGGGCATTTGACTGGTTTTCATATTTTTTCCAATTGCAAATTGGTGCTGCTATAAACGCCATTTTGGCACTGTACATTACGTATCTATTTCGTATAATGGCTTCTTCTGGGCCAAGGTAGGTCTAAGATCTGCTTTTAGTTCTTTAAAGATCTCCTTTACGGCTAATGGTTATACTGGATTTACATTCCATCAACATTGTTAGGTGTTTTCCTTTTCACCAGTCACAACATCTGTGTTTTGATTTTTTTATTAGGGGCCATTCTTTCAGGGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTTTAATAGGTTTGAGGCCATTTATATCTTCTTTGAAATTGTCTATTCATGTCCTTAACTTTTTGATAGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAATTTTCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTAGTTGGGTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCAGAAGTCTTTTACTAACCCAATGTCGAGGTTTTTTTCAACGTTATCTTCTAGAATTTTTTTACCGGGTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTGGATCCAGTTTCATTCTTCGACATGGCAGGTTTGAGTGATGTCATTTGTTGGTCGGGTCCTTTCCCCACTTCATATTTTGTTTGTTTGTTGAGATCTTGAGATTGGCTGTACGTGTTTAGCTTTATCTCTTGGTTCTCTATTCTCTTCATTGGTCTTATGCCTGTTTTTTATACCAGTACCATGCTGTTTTTGCTGATGGTGGCCATTATAGTTTGAAGTCAAATGTAATTACCTCAATTTGTTCTTTACTTAATCTTTACTTTGGCTGGGGCCTCTTTTTGGTTCCATACCGATTTTAGGATTGTTTTTCTCATTCTGTAGAATATTAGGTAGTATTTTTGATGAGTGCATTAGATTTGTAGGTACTTTTGGCGTATATGGTCATTTCTATGTGATTTACTCATCATGAGAATGGATGTATTTCCATTTGTTGTGTATGATTTCTTTTTTTCAGCAGTGTTTTGTTGTTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAGTATAGTCAAATATATATATATATATATATATTTACGCTAATATAAAGTTGGGGATTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGGCTATAGCGGGCTACTGATTTGTGTACATTAATTTTGTATCTAGGCTTTGCTGGAATTCATTTTAACAGTTCAGGAACTTTTAGTTTGGAGTCTTTTGGGTTTCTAGGTATACGATCATATCATCAGCAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTACTCTGGCTGGGACTTTATGTTGAAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCCGCACGGGAAATGCTTTCTTTTTCCATTAAATGTCTAATGTTGTTGGCTGTAGGTTTTGTATCACAGGTGGTTTTTATTACCTTAAACGCCTTCTACGTAGATTTTACTGGGGACTTTAATCATAAAAGGATTACTGGATTTTTTTTGTCAAATATTTTTTTCTGTGTTTGTAGAGATGATCATGTGATTCTTATTTTTAATTCTGTTTTTATATTTATATCATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCCTAGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTAATACGTGGATTTGGATTCAGTTAGCTAAGTATTTTTATTGAGATTTTTGCATCGTTAATCAGTGATGGGTCTCAGTTTTATTTTTTTGTTATAATGTCCTTTCCTGGTTTTGATATTACAGTGATGCAGCTTCATTGGATGATTTAGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGGATTGGTACCAATTTTTCTTTGAATACCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAAACTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGTTGTATCTTTCAAGAATTTATCTCCTCTGAGTTTTTCGTTTATATTACGCCCACAGAGTGTCATAGTAGCCTCCGTGATCTTTTGTATTTCTGTATGCTGAATTTGTAATATCTCCCATTTCATTTTAAGTAAACTTATTTGGATCTTCTCTTTTTTTTTTTTCTTGGTTAATCTTACTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTGTTTATCTTTTTTTTTTTTTGTATATTTTTGTTTCAATTCCGGCTTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTCTGCTGGGTTTAGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGTGTGACCTTAGATTGTCTATTTATTACTTTTTCAGGGCTTTAGATGTAGGTTAATATTCTCGATTTCTATTATGTAGGTATAATGCTATAGAGATTCCTATTCTGGTGTATTTCGAGATTTGTTTTCAGATTTGGGGAGCTCCTTTGCTTGGTTTTGTAGTACTCAGTATTTGTCTGAAAAATACTATCTTCCTTCATTTATAAACTTAGTTTCCTGGATACAAATTCTTGGCTATTTGTTTAGTTTAAAGACTACCGGTAGGACCCCAATCCACTTGTCTTTGCTGTATCCCAGTTTTGATAGGTTGTGTCCTACTATTGTTCAGTTGAGATTTTTTATTTCTATCTGGTTCATTGTTCACCCAATGATTTTTTCAGGATTGTTAATTTGATGTATTTGCAATGTCTTTGAAATTTCTTTTAGAGGTTGGTTCAATCTTAATTCCTATAGTCTGACATAGTACTTGTCATTTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTAGCCTATATATATTTCTATATTAGAGGAATGTTCCATGTGCTGATGAATAAGTCTTATGTTTATTTGTTATTGCGTCTTCTCCCTTATCCCTGTAAATCCGTTGTTGTAAGGAGTGTAGTTTAAAGTACATTGTTTTTCTTTGTTAACTTTTCTATCTTGATGATCTGTATCTAGTGCTGTCATTAGATGCTAAGTCCCTATTGCTGTGTTACCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTGGGGCGCTCAGTATTAGGCACCCATGTTTAGGATTGTGATATTTTTCGTTCGTCCTTTTATCATTATAATGTCTCTCTTTGTATTTTTTACCGGCTGTTGCTTCGTTTGTTTTGTCTGATACAGAATAGTTATTCCTGCTTGCTTTTTAGTGTCCATTGCATGGGATATCTTTCTACCTTTACCGTATATGAGTCCTTAGTATTGGTGAGTCTAGTAGAGACAGTAGATACTTAGTTAGGTAATTCTCCATTCTGCCATTCTGTATCTTTTTAGGTGGAGCGTAGGCCATTTATTCAGTGTTAGTATTGAGATGGTACTATTCTATTCATCGCGATATTTGGTGCCTAGATACCTTGGTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGAGGATTAAACGCAAAAACGGAACGCCGAA -3: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.590575, "nblock" : 5778, "sequence_length" : 2399, "blocks_per_base" : 2.408504, "nsample" : 29150, "trim" : [ 200, 29090 ] } -3: TCGGTGCGCATTCAAGCCAACCCTACCTCCTTCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTCGCGCCCCTTCCGCTTGAATCGCCTTCACTAAGTATGTTGGTCCCACATGATAATTCGTAGATTGCATCGACTCCGTTTCCGAATGAACGTGGATCGGCATTTCAGTAGTAGGCTGGGGCGGATGGAAAAATCAGCGTGCCCTCTCCACAATCGATCATCCGTTTGTCGGCCGGTACGGTAGGACCAGTCGAACTACTCAACCATTACCTAGATGAGGAATCCGTTGATTTTGCATCGTTGGGATCAGTTGGTAAATTCAATAGAATAGTTGTCCTAGACAGGTTGATGGATGGGAGAACAAAGCGGGGCCATGGGCGGGATAATGGGCGGTTGGAAATGGGATACAGCTCCATTCAGCCCTACACTTCCATTCCTCGTATGCTACGATGAATCAGGCCATGCATATCGCTTTTATTGGCCATCAGTATAATTCCAGCCTACCGATATCGATCCATCCTAATTAAGTAGGTGGCTCTCAATGGATCAAGAGATTTAAACATCACAGGTAGGATGATCGTCAGGACTCAGACCTTCAGGAATAATCATGCGCCACCTCCTTTCACATGTCATTCAGTGTGGTATGGTAGGGTAAAATCACCTTCATTCGTACTTGCCTTCAGGCGATTTCAGATAGGTTTGAAACGAATCTGTTGGTATCGGACGAAAATTGGATCAACATACATCAGTAAACTGCATTCCGCTCGACATAGCTCTGGACTTTAGCATAGATACATTAGGCTGGCATGAATTGTGGGAGGAGCCCTCGGAATGGACTTGTCTGGGAGAATTTGAGATCCTAAAAGTGAGATGGCACTACTCTACTCCTCGTCGATGGATCCGCTTGTACAATACAATCCAATTTCTAGATGAATGAAATAGTAGGTGGTTGTGGGCCAGCATGGAGCAGGACCCTTCACTACAGCCACCTCCGATGCGGGGTTCATTGAGGTGCATTCTGCGTGCCTCTGTCGTGCAGGTACCTTAATAAGCCGGGAGGCATTTCAAAGCTGAATCAGGAGGTAAAAATGAGTAGGATTTTAAGCCGCCGAATGGGAAGAACATCCTCTCGTTACCGGCGCAGAATGCACTTCCTGCCGGCCAGGCCAGTCAAAATGTACGCCAGCCAGGAATCAGGAATAAAGACTCAGTCAGTGAACGGCGAGCCCGCGCTGTGCTTCCGCCACAGTGGTAGAAAAACGTCCAGGATCAAATTACGTATTTCAATTCCGTGGAACAATTTGAAAGGCTAAAGCCTAGTAAAATTCAACTGGACGGACAGAGCCCGGAAAAAGCCTCCCTACCCCACTTCAAAGCGGAATGAACGCGGGCTCAAACCCTACAAAATCGCGTATTAAGTAACATTTCGCCCGTACTACACTATCAATCAGCCATTACCTCCGTAAAATACCAAATAGGTGAGAAAATTTGCATCCGCCATCGTACAGCCATCAAATTAGCCCACTCAAAATGGAATTTTGGATGAAAAAGGTATCATTCGACTCACCCCCTTACTTAATATTACGCTGCTCGCGTAAATATTTCCCTTTATACCATCCCAATGCATGCCCAATGCTTAGCATCATGTATTTCGACTCAACACCCACCATGCGCGATGGCGTAAATATAGAAACCAGATACGAGATTTCAGGCATGCCACGCCAGCGGTCAGTATAAACCGGGCAAAATCAAATAGCCGCCAGGCTCCGGACGGTGAGGCGAGATACCGGGTAGATGGGCTGGCGCGCTACATACTCCCAGAAATAGGGCATGGAAGCGCTCCATCGGCGCGATACCAAGATGGGCCGGCACCACTTCACGCCAGCATCTAAATTTTGCCTCGATAAAAGAAATCGTCCCCGACGGTACCGACCCATGAACAGGCATTTTGTTGCCCCGTCGCGCTTGCCACCCATTCCAAAATAGGTGGCGCCAGTACGAAGCGGGCTGAGCTAAACGCGCGCACCGCTCAATGAATCGCATCATCAGCCTTCATCCTCGTACCAGATACCATGGCCTCCTCCACAGCCCGAAAATAGCAAATATCCCTTCAATATGCGCTGATGGGCTGGAAACAGTATGAATAGGCGGGCGGGCCAATGGAATGGCTATCAACAGCCAGCGAATGAACCGCTTCCAATAGGTAGAGCTAAATGCGCGGAGAAATTTGGCCTCCCGTACCGGCCAAACCTAATCAAAATTCTCCTTCGACGGGCAGCTACAGGCGAACAGCGCCAGTGAAAAACATGCGGAGCGGATGGGGTCCGTATCGCTTCGACGAAACTGCCTCCAGCAGGAAAATCAGCTGTCTCATGAAGCGGTGCGCATGAAA - 4/19 Test #3: test_raw_call .................... Passed 19.90 sec -test 10 - Start 10: test_seqmappy - -10: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "seqmappy" "/build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa" "/build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5" -10: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain -10: Test timeout computed to be: 10000000 9: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 to /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa (score = nan) 9: idx signal pos base current sd dwell 9: 0 182.803436 0 C 0.041604 0.315691 0.652851 @@ -380563,7 +380593,17 @@ 9: 64392 59.267578 0 C 0.041604 0.315691 0.652851 9: 64393 58.711945 0 C 0.041604 0.315691 0.652851 9: 64394 57.415466 0 C 0.041604 0.315691 0.652851 - 5/19 Test #9: test_mappy ....................... Passed 0.65 sec + 5/19 Test #9: test_mappy ....................... Passed 0.50 sec +test 10 + Start 10: test_seqmappy + +10: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "seqmappy" "/build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa" "/build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5" +10: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain +10: Test timeout computed to be: 10000000 +4: ATGAAACTATAATTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTATTTTCTAACTGTGAAAATATACTTGGACTGATTAGTTTTGTATATTTGCATATTATTTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAATTTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGAGATGATGTTTGGTTTTCATTCCTGGGGGTTACTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGCTGCTATAAACATATTTATTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA +4: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.611628, "nblock" : 5778, "sequence_length" : 2439, "blocks_per_base" : 2.369004, "nsample" : 29150, "trim" : [ 200, 29090 ] } +4: CTCAGTGCGCATTCAGCCAACCCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGCCAGGGCCAGTATTACGCTCCATTCAGCCTACACCATTACCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCGTCCATCATTAGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCGATAACATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTACCGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAGTGGAATCAACGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTACCGCCTCGTCGGTGAATCCCGCGCCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGACTTCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGGTGAGTTTTATGGCCGCCGAATGGGAAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCAATCAATATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGACGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGTAGATGGGCGTCAGGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGAACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTCATCAGGCGGGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCGAATCGGTATTTCCATCTCATGAGGCGGGTGAAATG + 6/19 Test #4: test_rawrgrgr_r94_call ........... Passed 27.04 sec test 11 Start 11: test_squiggle_r94 @@ -385709,181 +385749,13 @@ 11: 603 G -0.348534 0.163240 9.530733 11: 604 C 0.161046 0.266937 15.063381 11: 605 T 0.194787 0.502125 16.019987 - 6/19 Test #11: test_squiggle_r94 ................ Passed 0.42 sec + 7/19 Test #11: test_squiggle_r94 ................ Passed 0.39 sec test 12 Start 12: test_squiggle_r10 12: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "squiggle" "--model" "squiggle_r10" "/build/reproducible-path/scrappie-1.4.2/reads/test_squiggles.fa" 12: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain 12: Test timeout computed to be: 10000000 -5: ATGAAACTATAATTTTTTTAACAATTGGAAAATTCTTCAGTTTTTTATGTACAACAATTTTTTATTTTCTAACTGTGAAAATATACTTGGACCTGATTAGTTTTGTATATTTGCATATTGGCTAGCAATATTTTTTAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTATATGTAATCATACGGTGTGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCCTTTTGCTTTATTGTCCTGGCGGCTGAATATTCTTGCTGTTGGATGGAAGGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAAAATTGCAAGATTTTCATATTTATTATTATTTTTTTAATTATTTCAACAGGTTTTTTGGGAACTGGTGATGTTTGTTACATGGAATAAGTTCTTTTACTGGTGATTTGACATTTTGTTGTACCTCATCACCTGAGCAGTGTGCACTGCTATCCAGTGGTGTGAGTCTTTTATCCCTTATCCTCCTCACCCGTTTCCCCCAAACCTCAAGTCCATTTAGCATCATTTATGCCTTTTGCATCCTCATATATACTGATGAAGAAGAGATGATGTTTGGTTTTCATTCTGGGGGTTGCTTCATAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGGGCTGGTTTTCATATTTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTTATTTTCTTCTGATACGTAATCTATTTCATTATAATGACTTCTTCTGGGCCCAAAGGTAGGTCTAAAAGATCTACTTTTAGTTCTTTAAAGGAATCTCCACACCATTTCACATTAATGGTTATACTAGTTTACGTTCCCATCAAACAATTAGGGTGTTTCCTTTTCACCAGTCACACCAGCATCTATTAATTTTGATTTTTTATTAGGGGCCGTTCTTTCCAGGAGTGAGGTGGTATCCCACTGTGGTTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATGGTACAGGCCATTTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTTCTCCTCTCCATCTCTGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCCTGACTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTCTTGGTCACTTGAAGTCTTTTGCCTAATAGCAATGTCTAGAAGGTTTTTCAACGTTATCTTCTAGAATTTTTTATAGGGTTTTCGCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCTTGGGTTTACCGAATTCCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCGTAGTTAACATGCAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAGTAATGTGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATAGAATTTTAGGATTGTTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGAGGTGCATTGAATTTGTAGATTGCTTTTGGCAGTATGTGGTCATTTTCACAATATTGATTTTACTCATCCATGAGGAATGGGATGTGTTTCCATTTGTTGTGTATGATTTCTTTTTTCAGCGGTGTTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTACAGCTAGTAATAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTGTTCATGTATACTTGGGAGGCTACTGATTTGTGTACATTAATTTTGTATCCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTTGGTTGAGTCTTTAGGGTTTTCCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGTAGGCGCCTTGTCTTTGTTCAGATCGCACGGGAAATGCTTTCTTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTGTCACAGGTGGTTTTAATACCTTAAGGCATATCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGGATGCTGGATTTTTTTGTCAAATATTTTTTCTGTGTTTATTGAGATGATCATGTGATTCTTGTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGGATTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTGTTATGTGTCCTTTCCTGGTTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAATTAATGACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCTAGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTTACCCAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTTAATTAGGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTGTTTATCTTTTGTATGTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTCTTTTTCTGCTGGGTTTGGGTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATGTAGGTATGTGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTTCAAGATTTAGAGCTCCTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCCTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCTTTGTCTTTGCTGTATCCCGGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAAAGAGATTTTTTACATTTCTATCCTGGTTCATTGTTCACCCAATGATTTTCAGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTGGGGTTGATTTCCAATCTTATTCCATATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTCATATGTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTGCGTTAGAATCTTCTCCACATATCACTGTAAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTTCCTGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTTGGTGTCCATTTGCATGGGATATCTTTTCTACCCCTTTACCTTAAGTATGTGAGTCATATGTATTGGAGTGAGTCTAGTAGAGACGGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTAAGTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATGCACCTTGGTTTTTTTTAAATCATTGCATTATTGTTTTATAGATCCTGTGAGGAGGTTAAACGCAAAGCAGACGCCGAGATAA -5: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.586425, "nblock" : 5778, "sequence_length" : 2501, "blocks_per_base" : 2.310276, "nsample" : 29150, "trim" : [ 200, 29090 ] } -5: CCCTCAGTGCGCATTCAGCCAACCACCTACCTCCTTCCAGTATACCAATCCAGCTAAGCGCCGGTAATGAATTACGCGCCCCCTTCCGCGGAATCACCCTTCACTAAAGCCTTCATTGAATCCCCACGCCAGCCAATGGCCAGGTACATCGGCTCCGATTTCCGAGAGCCGACATGGTCCAGCTAGTAAATGGCGGGAGGCCATTAAGGCAGATGAAAAAATCGCGACGTACCTCTCCCCAATGTCGATCATCGGTGCCAATGGCCGGTACGGCGAATGACGTCCATTTACTCGCCAATACCTGAATAAAGAATCGGTGATTTTACGCTTCGATGGGATCAGTGGGCCGTATAAACCGGGTATGGAACAGGTTGGCCCAATCGACCAGGAGAACAAAGCGGGAGCCGGCGCCGGCGGGATAAATGGAGGCGGATTTGCCGGAAAGCCAGGAGCCAGTATTACGCTCCATTCAGCCTACACCATTACCGGCATCACCAATCGATAGGCCATGCATATCGCTTTGTGTGCCATCAATATATTCCAGCGCCTACCAGCCTCCCGTCCAACTCTAATGGCCGTAACTCAGCCAGATCAAGGTACAGCATCACAGGCCAGATGATCAGGAATTTCGACCTTCCGGAATAGCATCATGCGCCACCTCGCTTCACATGCTCATTCAGTAATGGTATGCGGGGTAGCGTATCTTTGCCATCGACCGCCGCGCTTCGGCGCCCGGTTCGAATAGGGTAAGCTGGGCTCGGTATCAGACGAAAAAAAGTGGAATCCGCCCATCAATGCGCTGCATTCCCGCTCGGCCTGCTTTCTGGGCGGGAAAACTACCAACATAAATACATTAAATGGCATAAGGCGTGCCGGAGGGGCCTCGGAATGGAACTTGTCAGAAGGTAGGAATCCTAAAAGTAGACCAGCGCCTCACCGCCTACCTCGTCGGTGAATCCCGCCTGTCATACAGCTCACAATCCAGAAAATTTCGCGCATTCAATCCGGTAATACCGAATGGTAAATGGCCGATGGTGCTGAATTCGTTGGCGAACCAGCGCATGGAGCGAGACCCTTCACCAGACAACCTCCGATACGGGGCGGCTCAGTGAGGTACGAACTTCTGGCTGGCGTGCCTCATCGTACCGGTACCTTATCGCCGGAGGGCGTATTTCGGCTAGAATCGGAGAAAGAATTGCGTGAAGTGAGTTTTATGGCCGCCGAATGGGAAGCGAGAATTTCTCGTTACCGGCGCGGAATGAAGCCTTCCTGCCGGCCCCGGAATGATCGTAAATGTACATAATCCAGAATCGGTCGGAATAGTCAGTGTGGTGGCGGCGGCCCGCGCTGTGCTTCCGCCGTGGTGGCTGCGTCGGATCAATTATTTATCCTTCAATCAATGGGAATAGTGAGCTAAAAGCTTCAAATGCCGAAATCTTCAGACCGGACAGAAATGGAAAAGCCTCCTCGCCCGCTGAAGGCAGGGATGAACGCGGGGGCTCGAGTCCTACCAAAATCCCGTATTAATGGCATTTCAGCGCCCATCCCACTATCGATGTATTATTACCTCCGTAAAATGCCGCAAACCGGTGGCGGGAGAAACATCCATAAATCGGCCGTATCCGATGGCCTCAAAAATGGGTTTGGTTGAGGGCGGGAAAAGGTATCGTTCGACTCACCTTAGCAATATTCTATCGCGTAAATCAGCTTCCCTTCTCCACCATCCAGCTGTGCCACAATCTTAGCATCATCAGCAATTTCGATCAACCACCCTTCGGCCGTGCTGATGGCGTAAATATAACAAAATAGATGATTGAATTTCAGGCGAATGCCGCCAGCCCCGGTCAGTATCGTCGGGTGGAATCAGATGTATACGAATCGGACGGTGGGGCGGTCTACGGCCGGTGGAATGGTTGGCGTGGCGGCCATCTCCAGAATGGGCGTGGGCTGGCGCTCATCGGTAGATACCAAGATGGGTCCGACAGCTTCACGCCAGCATCAATTTTGCCTCGATCAAAAGAATCGATCCGACGTTGCCGACCATGAACAGATTTTGCGGTTGCCCCGTCGCCTTGCCATTCCAAAATGGTGGCCATCGGTGCGAGGCGGGCTGAAGACTAGAACGCCTTGCCGCTCAATCGAATCGCGTAAATCGACCTTCTACTTTCGTCTCGTACCCAGTCACCATGGCCTCATCTGGCCGAAATCAGCGATATCCTTCAATGGCGGCGTAGATGGAAAATGAGCAGTGAATGGTGGGCGGGCCAATGGAATGACTATCAATGGCGAATGACCTTCGAAATGGAGAGTGAGCCCTAAATGGGCGCGGAGAAAATTTGGCCTCCGGTACCGAGGCCGTCAAATAAATTTCATCAGGCGGGGCGGCTGGTGAACCGCATCGGTGAAAAACATGCATGGAGCGGATGGGGTCAGTATCGCGGCCGACGAGCTGCCTCCAGCCGAATCGGTGGCTGTCTCATGAGGCGGGTGCGCGTGAAATG - 7/19 Test #5: test_rawrgrgr_r941_call .......... Passed 20.88 sec -test 13 - Start 13: test_licence - -13: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "license" -13: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain -13: Test timeout computed to be: 10000000 -13: This software is subject to the terms of the Mozilla Public -13: License, v. 2.0. If a copy of the MPL was not distributed with this -13: file, You can obtain one at http://mozilla.org/MPL/2.0/. -13: -13: (c) 2017 Oxford Nanopore Technologies Ltd. -13: -13: -13: -13: The vectorised math functions 'src/sse_mathfun.h' are from -13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is -13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. - 8/19 Test #13: test_licence ..................... Passed 0.03 sec -test 14 - Start 14: test_help - -14: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "help" -14: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain -14: Test timeout computed to be: 10000000 -14: Scrappie is a technology demonstrator for the Oxford Nanopore Technologies -14: Limited Research Algorithms group. -14: -14: Basic usage: -14: * scrappie events Base call from event based data. -14: * scrappie help Print general help or help about specific Scrappie command. -14: * scrappie licence Print licensing information. -14: * scrappie raw Base call directly from raw signal. -14: * scrappie version Print version information. -14: * scrappie squiggle Create approximate squiggle for sequence -14: * scrappie mappy Map signal to approximate squiggle -14: * scrappie seqmappy Map signal to sequence via basecall posteriors -14: * scrappie event_table Output table of events for read -14: -14: This project began life as a proof (bet) that a base caller could be written -14: in a low level language in under 8 hours. Some of the poor and just plain odd -14: design decisions, along with the lack of documentation, are a result of its -14: inception. In keeping with ONT's fish naming policy, the project was originally -14: called Crappie. -14: -14: Scrappie's purpose is to demonstrate the next generation of base calling and, as -14: such, may change drastically between releases and breaks backwards -14: compatibility. Newer versions may drop support of current features or change their -14: behaviour. - 9/19 Test #14: test_help ........................ Passed 0.02 sec -test 15 - Start 15: test_help_events - -15: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "help" "events" -15: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain -15: Test timeout computed to be: 10000000 -15: Usage: events [OPTION...] fast5 [fast5 ...] -15: Scrappie basecaller -- basecall via events -15: -15: -#, --threads=nparallel Number of reads to call in parallel -15: --dump=filename Dump annotated events to HDF5 file -15: --dwell, --no-dwell Perform dwell correction of homopolymer lengths -15: -f, --format=format Format to output reads (FASTA or SAM) -15: --hdf5-chunk=size Chunk size for HDF5 output -15: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, -15: 1: quickest, 9: best) -15: --licence, --license Print licensing information -15: --local=penalty Penalty for local basecalling -15: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -15: -m, --min_prob=probability Minimum bound on probability of match -15: -o, --output=filename Write to file rather than stdout -15: -p, --prefix=string Prefix to append to name of each read -15: --segmentation=chunk:percentile -15: Chunk size and percentile for variance based -15: segmentation -15: --slip, --no-slip Use slipping -15: -s, --skip=penalty Penalty for skipping a base -15: --temperature1=factor Temperature for softmax weights -15: --temperature2=factor Temperature for softmax bias -15: -t, --trim=start:end Number of events to trim, as start:end -15: --uuid, --no-uuid Output UUID -15: -y, --stay=penalty Penalty for staying -15: -?, --help Give this help list -15: --usage Give a short usage message -15: -V, --version Print program version -15: -15: Mandatory or optional arguments to long options are also mandatory or optional -15: for any corresponding short options. -15: -15: Report bugs to . -10/19 Test #15: test_help_events ................. Passed 0.02 sec -test 16 - Start 16: test_help_event_table - -16: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "help" "event_table" -16: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain -16: Test timeout computed to be: 10000000 -16: Usage: event_table [OPTION...] fast5 [fast5 ...] -16: Scrappie basecaller -- basecall via events -16: -16: --licence, --license Print licensing information -16: -o, --output=filename Write to file rather than stdout -16: --segmentation=chunk:percentile -16: Chunk size and percentile for variance based -16: segmentation -16: -t, --trim=start:end Number of events to trim, as start:end -16: -?, --help Give this help list -16: --usage Give a short usage message -16: -V, --version Print program version -16: -16: Mandatory or optional arguments to long options are also mandatory or optional -16: for any corresponding short options. -16: -16: Report bugs to . -11/19 Test #16: test_help_event_table ............ Passed 0.02 sec -test 17 - Start 17: test_help_raw - -17: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "help" "raw" -17: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain -17: Test timeout computed to be: 10000000 -17: Usage: raw [OPTION...] fast5 [fast5 ...] -17: Scrappie basecaller -- basecall from raw signal -17: -17: -#, --threads=nparallel Number of reads to call in parallel -17: -f, --format=format Format to output reads (FASTA or SAM) -17: --hdf5-chunk=size Chunk size for HDF5 output -17: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, -17: 1: quickest, 9: best) -17: -H, --homopolymer=homopolymer Homopolymer run calc. to use: choose from -17: "nochange" or "mean" (default). Not implemented -17: for CRF. -17: --licence, --license Print licensing information -17: --local=penalty Penalty for local basecalling -17: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -17: --model=name Raw model to use: "raw_r94", "rgrgr_r94", -17: "rgrgr_r941", "rgrgr_r10", "rnnrf_r94" -17: -m, --min_prob=probability Minimum bound on probability of match -17: -o, --output=filename Write to file rather than stdout -17: -p, --prefix=string Prefix to append to name of each read -17: --segmentation=chunk:percentile -17: Chunk size and percentile for variance based -17: segmentation -17: --slip, --no-slip Use slipping -17: -s, --skip=penalty Penalty for skipping a base -17: --temperature1=factor Temperature for softmax weights -17: --temperature2=factor Temperature for softmax bias -17: -t, --trim=start:end Number of samples to trim, as start:end -17: --uuid, --no-uuid Output UUID -17: -y, --stay=penalty Penalty for staying -17: -?, --help Give this help list -17: --usage Give a short usage message -17: -V, --version Print program version -17: -17: Mandatory or optional arguments to long options are also mandatory or optional -17: for any corresponding short options. -17: -17: Report bugs to . -12/19 Test #17: test_help_raw .................... Passed 0.03 sec -test 18 - Start 18: test_help_squiggle - -18: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "help" "squiggle" -18: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain -18: Test timeout computed to be: 10000000 12: #one 12: pos base current sd dwell 12: 0 T 0.273674 0.499834 0.755774 @@ -388412,33 +388284,6 @@ 12: 2523 T -0.083218 0.260580 7.076823 12: 2524 A -1.159863 0.143544 8.895529 12: 2525 T -0.833608 0.215293 6.887576 -18: Usage: squiggle [OPTION...] fasta [fasta ...] -18: Scrappie squiggler -18: -18: --licence, --license Print licensing information -18: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) -18: -m, --model=name Squiggle model to use: "squiggle_r94", -18: "squiggle_r94_rna", "squiggle_r10" -18: -o, --output=filename Write to file rather than stdout -18: -p, --prefix=string Prefix to append to name of each read -18: --rescale, --no-rescale Rescale network output -18: -?, --help Give this help list -18: --usage Give a short usage message -18: -V, --version Print program version -18: -18: Mandatory or optional arguments to long options are also mandatory or optional -18: for any corresponding short options. -18: -18: Report bugs to . -13/19 Test #18: test_help_squiggle ............... Passed 0.02 sec -test 19 - Start 19: test_version - -19: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "version" -19: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain -19: Test timeout computed to be: 10000000 -19: scrappie 1.4.0- -14/19 Test #19: test_version ..................... Passed 0.02 sec 12: 2526 T 1.226973 0.187758 8.868387 12: 2527 A 0.326663 0.163646 8.637401 12: 2528 A 0.776825 0.159115 7.422459 @@ -391050,7 +390895,200 @@ 12: 603 G -0.572062 0.335164 12.230327 12: 604 C 0.561030 0.467363 9.792212 12: 605 T -0.235200 0.581865 6.671799 -15/19 Test #12: test_squiggle_r10 ................ Passed 0.51 sec + 8/19 Test #12: test_squiggle_r10 ................ Passed 0.43 sec +test 13 + Start 13: test_licence + +13: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "license" +13: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain +13: Test timeout computed to be: 10000000 +13: This software is subject to the terms of the Mozilla Public +13: License, v. 2.0. If a copy of the MPL was not distributed with this +13: file, You can obtain one at http://mozilla.org/MPL/2.0/. +13: +13: (c) 2017 Oxford Nanopore Technologies Ltd. +13: +13: +13: +13: The vectorised math functions 'src/sse_mathfun.h' are from +13: http://gruntthepeon.free.fr/ssemath/ and the original version of this file is +13: under the 'zlib' licence. See the top of 'src/sse_mathfun.h' for details. + 9/19 Test #13: test_licence ..................... Passed 0.01 sec +test 14 + Start 14: test_help + +14: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "help" +14: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain +14: Test timeout computed to be: 10000000 +14: Scrappie is a technology demonstrator for the Oxford Nanopore Technologies +14: Limited Research Algorithms group. +14: +14: Basic usage: +14: * scrappie events Base call from event based data. +14: * scrappie help Print general help or help about specific Scrappie command. +14: * scrappie licence Print licensing information. +14: * scrappie raw Base call directly from raw signal. +14: * scrappie version Print version information. +14: * scrappie squiggle Create approximate squiggle for sequence +14: * scrappie mappy Map signal to approximate squiggle +14: * scrappie seqmappy Map signal to sequence via basecall posteriors +14: * scrappie event_table Output table of events for read +14: +14: This project began life as a proof (bet) that a base caller could be written +14: in a low level language in under 8 hours. Some of the poor and just plain odd +14: design decisions, along with the lack of documentation, are a result of its +14: inception. In keeping with ONT's fish naming policy, the project was originally +14: called Crappie. +14: +14: Scrappie's purpose is to demonstrate the next generation of base calling and, as +14: such, may change drastically between releases and breaks backwards +14: compatibility. Newer versions may drop support of current features or change their +14: behaviour. +10/19 Test #14: test_help ........................ Passed 0.01 sec +test 15 + Start 15: test_help_events + +15: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "help" "events" +15: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain +15: Test timeout computed to be: 10000000 +15: Usage: events [OPTION...] fast5 [fast5 ...] +15: Scrappie basecaller -- basecall via events +15: +15: -#, --threads=nparallel Number of reads to call in parallel +15: --dump=filename Dump annotated events to HDF5 file +15: --dwell, --no-dwell Perform dwell correction of homopolymer lengths +15: -f, --format=format Format to output reads (FASTA or SAM) +15: --hdf5-chunk=size Chunk size for HDF5 output +15: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, +15: 1: quickest, 9: best) +15: --licence, --license Print licensing information +15: --local=penalty Penalty for local basecalling +15: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +15: -m, --min_prob=probability Minimum bound on probability of match +15: -o, --output=filename Write to file rather than stdout +15: -p, --prefix=string Prefix to append to name of each read +15: --segmentation=chunk:percentile +15: Chunk size and percentile for variance based +15: segmentation +15: --slip, --no-slip Use slipping +15: -s, --skip=penalty Penalty for skipping a base +15: --temperature1=factor Temperature for softmax weights +15: --temperature2=factor Temperature for softmax bias +15: -t, --trim=start:end Number of events to trim, as start:end +15: --uuid, --no-uuid Output UUID +15: -y, --stay=penalty Penalty for staying +15: -?, --help Give this help list +15: --usage Give a short usage message +15: -V, --version Print program version +15: +15: Mandatory or optional arguments to long options are also mandatory or optional +15: for any corresponding short options. +15: +15: Report bugs to . +11/19 Test #15: test_help_events ................. Passed 0.02 sec +test 16 + Start 16: test_help_event_table + +16: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "help" "event_table" +16: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain +16: Test timeout computed to be: 10000000 +16: Usage: event_table [OPTION...] fast5 [fast5 ...] +16: Scrappie basecaller -- basecall via events +16: +16: --licence, --license Print licensing information +16: -o, --output=filename Write to file rather than stdout +16: --segmentation=chunk:percentile +16: Chunk size and percentile for variance based +16: segmentation +16: -t, --trim=start:end Number of events to trim, as start:end +16: -?, --help Give this help list +16: --usage Give a short usage message +16: -V, --version Print program version +16: +16: Mandatory or optional arguments to long options are also mandatory or optional +16: for any corresponding short options. +16: +16: Report bugs to . +12/19 Test #16: test_help_event_table ............ Passed 0.02 sec +test 17 + Start 17: test_help_raw + +17: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "help" "raw" +17: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain +17: Test timeout computed to be: 10000000 +17: Usage: raw [OPTION...] fast5 [fast5 ...] +17: Scrappie basecaller -- basecall from raw signal +17: +17: -#, --threads=nparallel Number of reads to call in parallel +17: -f, --format=format Format to output reads (FASTA or SAM) +17: --hdf5-chunk=size Chunk size for HDF5 output +17: --hdf5-compression=level Gzip compression level for HDF5 output (0:off, +17: 1: quickest, 9: best) +17: -H, --homopolymer=homopolymer Homopolymer run calc. to use: choose from +17: "nochange" or "mean" (default). Not implemented +17: for CRF. +17: --licence, --license Print licensing information +17: --local=penalty Penalty for local basecalling +17: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +17: --model=name Raw model to use: "raw_r94", "rgrgr_r94", +17: "rgrgr_r941", "rgrgr_r10", "rnnrf_r94" +17: -m, --min_prob=probability Minimum bound on probability of match +17: -o, --output=filename Write to file rather than stdout +17: -p, --prefix=string Prefix to append to name of each read +17: --segmentation=chunk:percentile +17: Chunk size and percentile for variance based +17: segmentation +17: --slip, --no-slip Use slipping +17: -s, --skip=penalty Penalty for skipping a base +17: --temperature1=factor Temperature for softmax weights +17: --temperature2=factor Temperature for softmax bias +17: -t, --trim=start:end Number of samples to trim, as start:end +17: --uuid, --no-uuid Output UUID +17: -y, --stay=penalty Penalty for staying +17: -?, --help Give this help list +17: --usage Give a short usage message +17: -V, --version Print program version +17: +17: Mandatory or optional arguments to long options are also mandatory or optional +17: for any corresponding short options. +17: +17: Report bugs to . +13/19 Test #17: test_help_raw .................... Passed 0.01 sec +test 18 + Start 18: test_help_squiggle + +18: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "help" "squiggle" +18: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain +18: Test timeout computed to be: 10000000 +18: Usage: squiggle [OPTION...] fasta [fasta ...] +18: Scrappie squiggler +18: +18: --licence, --license Print licensing information +18: -l, --limit=nreads Maximum number of reads to call (0 is unlimited) +18: -m, --model=name Squiggle model to use: "squiggle_r94", +18: "squiggle_r94_rna", "squiggle_r10" +18: -o, --output=filename Write to file rather than stdout +18: -p, --prefix=string Prefix to append to name of each read +18: --rescale, --no-rescale Rescale network output +18: -?, --help Give this help list +18: --usage Give a short usage message +18: -V, --version Print program version +18: +18: Mandatory or optional arguments to long options are also mandatory or optional +18: for any corresponding short options. +18: +18: Report bugs to . +14/19 Test #18: test_help_squiggle ............... Passed 0.02 sec +test 19 + Start 19: test_version + +19: Test command: /build/reproducible-path/scrappie-1.4.2/build_plain/scrappie "version" +19: Working Directory: /build/reproducible-path/scrappie-1.4.2/build_plain +19: Test timeout computed to be: 10000000 +19: scrappie 1.4.0- +15/19 Test #19: test_version ..................... Passed 0.01 sec +2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTCTTCTTTACTTACAGTGTTTTGGTTTTTTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA +2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175566, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } 10: # /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 to /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fa -- score 11581.235352 over 12818 blocks (0.903513 per block) 10: block pos 10: 0 -1 @@ -403871,32 +403909,30 @@ 10: 12815 -1 10: 12816 -1 10: 12817 -1 -16/19 Test #10: test_seqmappy .................... Passed 7.58 sec -2: GTTACGTATTGCTCTTGCCTGTCTAAATACAAAATTAGCTGGGTGTGGTGGCACACACCTGTAATCCCCAGCTACTCTCAGGGAGCTGAGGGCAGGAGGAGATCCTTAAACCCAGGGCCAGGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGAGTATTATTAAAATCGTTTCCGTAATTATTTTAAGAAATGTAGATATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTATTTCTCTTCGATTGCCTCATGGTTTCAGCATTTGAAGTGAGTGTCTAATGAAAGCGTTCATTTGAAGATAGTACAAAACTATTTGTAATTAACTAGACCAGAGAGACCTTTGACAATATTTTTTTTCTCTAAGCTGCTAGCCTAATGTACTGCAGAGGATCTTGCACATATGTATTCTGGGGAAATAAAATGCTATACAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTATAGGATTTTCCCTAAGAATGAGGACCTTGAAATTCCTTTTAATCTTTTGATTATGCTTTATTTCGCTTAGCATTAAAATGTATAGTGAAGGAAGTTGTGGCATCGCAGGGGAGATAGGAATCTTTAAGAAGGTAATATAAAATGGAGTATGAACAAATTGGAAATCACTGCTGAAGTTAGAAAATACTAGTTTGTACATATGTAAATTACCAACTGCGATAATAAAAAATATAAATATATAGTACATAATAAAATATGCCAAATATGTTACATACACACATTTTAATTTCATAACAAAGAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAGTGTGTTGATGCATCCACAATATGCTCATTGTTAGGAATTTGGATTGAATATTTCACTTTTCACATTACTGCTTTCTCACAAGGATTGATAGTGTTTTCTATTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGAGTATCATTTCAGCTTTCCATCCATTTTTTTATTTATGGACATACTGTAGTGGAAAGACCTATAAACACAAACGTTGTTGAAACTTAGAGGTAGAATAAAATATTAAATATTTCTTGCCCTTTTAGTGTATAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATAATATCTTTCTCCGCGGATGGTCTACTTTCTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCATTTTAGTAAATCATCAAATAAACTTAGTCTGTTGCCTTCACATTATTTAAAATCATGTCTCCATCTACCTTTAATCCTAGCCATTGCTGGATTTTCATTCATTGTTTTTTTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCTTGGCCTTAGGCCATGCAAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTAGGCTGAATTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTTAGTTCACCAGTTAGTGCTTTCTCCATCTGCAAAGTTGGCTCCTGTGCTCTGCAGTACATAGTGCGTAGTGGCCTCAATAGCCCAGCTGCTATTGATGAGTATTGCCATACTCACATTCATATCTAAACCAGAGATGGTGATCTCTTTCTTAAGGGCCGGATAACAGACATTTTGTGCTTGTGGACCACGTAGTTTCATCTCACCTGCTTGACTCTACTGTATTGTAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAAGCAACAGTATGTACAAAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGAGGATGCACGTTTAGGATAGCATACTGAACTGTAATACAGTTCCTGCTGTCTTACTTTCAAAATACATGGCACATATTGCTCCCTACTTGGAATGGCTTTCTACTCTCACTCTTCCTGTTGCTTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTGCCATACTCTACAAGGATCTTTCCTGATCCTCTAATTGTATCAGATGCCCCTGTTTTGCAACCTTAGCACCTGTCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTTGTGTTATGTTTCCCTGACTTCTGGGTGTGAGTTCTTAGAGTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTGGATTTCAATTAGGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTCCAAAAAAAACACATATGCCTGGGCCTATATGGACTTCAGTCTGAGTGGCTACAAGGTCTTGGTGGGCATTTGCATTTCTAGAACCCCTGAATGAAGTGCCCCAAAATGTATTGAATAAAAGCAATAAAACCCAGTAAGGAAGTTTCATGTTGGACTGTATTCCATTTTTTTTTATCACACTGTAGTTTCTACTTGTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGCTCAGACAGGCACTTAGAATATGCTTTGCTGGCTTTAAAAGTCATGGATGGTACAAATGCAAGCATGGGAACACTATTCACCAACAGAGATGTTGTGGTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTTGACACTGTTATTCAGAGAAAGAAAAGCCTCCTTGTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCGTGTATTTGTACCCAGAAGTGCCACAAGTTATCTTCTCAGAATGGAATCTGCTTTTGTGATCTTATTTTGAGGGGATAGACTGTAATGGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTTTTAAATAGAGGCCTCTAGTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTAAATGGGGTCTTGCTCTATGTACTGCCCAGGTTGGAGTGCAGTGTTATGATCATAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTATAGATGTGCACCACCCAGGCCTGTCTAATTTTTTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGGCTGATCTTGAACTCCGGTCAAAGTAGTCACACTCCCACCCATCCTAAAGCACTGGGATTACAGGCAGGGAGCCTTATGCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTTTTTTTTTGACTTAGTAAGCGTTTGCATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTTTAACATTCAATATGCTTAATTTCTTTTTCTTTTTTTTTTTTTTTTAATAGTGACAGAGGTCTCTTTTCTCTGTTGCCAGGCAGTCCTATGAACTCCTGACCCAAAGCCTTGGGATTACACAGACACTGGTGTCTATGCCTGGCTGATTTCTTTATAAAAAATTCTTTATAGGAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAGAAACGAAGTGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCTCCAGGCCTGAAGGGACCATAGGGAAAGAAAGGAGCTGTTATTGGAACCAAACAAGAGGTTAGCCTTAGAGAGGGCTGTCCAACTTGATCTTTGGTAGAAGAGTATCCACTGCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACACCATTCTCCCTTAGTCTCCTGGCTGGTTTCTTTCAGTGGCTTCTCCATCCAGAGACAAATAAGAGTCCAGATGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGGTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTATTATGTTTTCTTCTTTACTTACAGTGTTTTGGTTTTTTTTCGTTTCAGCAGCTCCCACACATGTGTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTGAAATAACCTGTATGAAACATTTAATGACTTTGTTCCTTGTTTAGTAAGTAACCACAGCTGAAAATCTTAAAGATCAGGTATATATGAAGTAATTTCAGTTTGATTAGATCATCTCTTATCTTGAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAAGTCTCCTTATGTACAGTGCTCTGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTAATAGAAAGGTATGACACATACACATTACATGCAGAATATGATAGAAGTGATTGTCTGGATGCAAAATATTGACTGTGTGTCCAATACAGCTTCATGAGTATTAACATTGCCTTGAGACAGACCTAAATGAATCAGGTATTCTAGGAAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAAATAGTCTAGTTTTAGTGGGGTTATAAAGTATGACGGGAGAAAAAAGAAGACTGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAGAAAACTATACTAGAGCACTTCATTTAATTTCTTAGGGAGTGGATGGAAGTCAAGTAAAGACTTTAGGTAACAAATATGCCTGTGGACCTCTGGAGACATGTTAAAATGATCATCTTTGGAATTGAGTAAGAACACAGGAACTGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGGAAACTTATAATCCCAGCAGAAGGCAAGGGAAGCCAAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAAGAGCTCCCTTATAAAAAAATCGTCAGATCAGATGTAGACTCCCACTATCACAAGAACAGCAAGCATGGGGAGCCACCCCAAGATTCATTGCCACCTCCACCTGGTCTCTCTCCCTTACTTGACACATGGAGATTATGGAGATTACAGAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACACACACACCATTCCACACTTGGCCTCTCCCAAAATCTCATGTCGGTTTCACATTCCACAAAGTCAACTGTGGCTTCCCAATAGTCCCCAAAGTCTTGCTCATTTCCAGCTTAATTAGCCCAAAATCCAAGTCCAAAGTACTCATCTGAGATAAAGGCCAAAGATCCCTTCCATCTATGAGACTATAAAATCAAAGGAAGTAAATTAGATTGCTTTCTAAGATACAATGGAATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGAGAAATTGGCCCAAACAAGGGGCTGTAGGCCCCAGAAAGTCCTGACCAGCTAAGGCAGTCATTAAACTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACACATCCAGCCCACTGATGCAAGAGTGGGCTCCCCACAGCCTCATGCAGCTCTCGACCTCTGGCTCCATGCCTCACATCCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCAGCTCCACCTCTGTGTGGCTTTGCGGGGGGTACAGTTCTTACTCTCTGCTGTTTTCACAGGCTGGCGTTGAGCCTCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCCTGCCATTCTGGGGGGGGTCTGGAGGATGGTGGCCCTCTTCTCACTTAGCTCCCACTGAGCGGTGCCCCAGTGGGGACTGTAGGGGGTCCAACTACCCCACATTCCCCTTCTGTACTGCCCTAGTAAGGGTTCTCCACTGGGGCCTGCACCTACAGCCAGCTTCTGCCTGGACATCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAACGTTAATTCTTGATTGCTGTGCACCAGGCCCCACATATAAGCCGCCAAGGCTTAGAACTTACACTCTCTAGGAAGCCTGAGCTATACGCTGGCCCCTTTTAGCCATGAGTGGGGATGCAGGACGCAAGTTCCGAGACTGCCAAGCAGCAGGCCCTGGCCTAAAACTAATTTTTCCCTCTTAGGCCTCTGGGCTGTAATGGGATGGGCTGCCACGTGAAGACTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACCCATGCACATTTCTGCAGCTGGCTTGGATTTCTACTCCCAGAAATGGGTTTTTTTTTCTTTCTACCTCATGGTCCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTTAAATGTCTGGTTCCAGTTTTAGATAATCTCTTTGTATGAATGCATATGACTGGATATGCTTTCAGAATCAGCCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGGCAGAGGCAAGATACTACCCTTCTCTTTGCTAGAGCATAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGATACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAACCATCTAACAAGTCTCTAGGAAGTACCAAACTTTCCACTTCTTCCTGTCTTCTAGCCCTCCATCCTGTTCCAACACTACACCTATTACTCAGTTGCTATAGCAGACTACCAAGGACTGGGTAATTTATAAAGAAAAGACATTTATTTCTCACGGTTGGCTTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCACAGCAAGGGCTTTCTTGCTGCCTCCTCTCATGATGAAAGTAGAGTACAAGAGGATGAGAGTGAGAACAAAATTGGCAGAGTCCTTTTTTATAATAAACCATTCTCAATAACCCTCCTTGGTAACAATATTGAATTCATTCATGAGGAATGAGCCCTTAACCAGAGCAATCATCTTTTGGCTAAGCTTCTCTTCCAATACTGCCACACTACAAGTTAAAGTTTCCCAACACATGAACTTTGGGGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTTTTGTTTTGTTTTTTTTGTTTTTTCAGAGTTCTAGATAAAGCAAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTATATAGTTTCTTAGATTACAAATTGGTAAGAAATAATGTGATACACTTTCTCCCACCTTAATCAATGGATTGTGAGGGTGTAAGTTTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTGCATTTCTTTTATCAGTAAACTCAGTGTTTTTTTTTCATAGTAAAATCAGTTGGTGATTTGATAGCATTTATTCTTCAATTATTTTAGCTTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAAAGTTTTAGATGTTGCTAAAATAAATGTGAAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCATTTCCATCTTCTGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCACCAAAGTACGTAAGTCCTCACTTAACATCTCAGTAGATTCTTGGGAGTACAGCTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTTATAACATTGTTGAGGAAAAAAAAATTGGTTTCATTATATATTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTAATTCTACTGTGAATGTCATGGCCCAATAAGAAAAGGACAGGGGCGGACTTACTAGGCATTTTGTGTCAGGTGAAAGCCAAATAATATCACCCAGATGAGGAAACAGGGTTTTGCTAATAGTTTGAATAGGAAAATTGGTGAGGAAATAGCTGTAGTTGTTTCCAGGTGAGCTCACTTATTCACCCGTATTCATAAAGGAATAAAGATTTAGTTTGACAAAACAATACTATTCAATATATTCAGTTAATGTGAACATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGGAAGCATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTAACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTAACTGGCCATTTCTGCCTTTCAAAAAAATTAAATACATTACTCAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAAATTACTGTGTTGCCCAAAGGGCTTTGACTCCACAAGTTTACTTTTTTTAGTAATAGTTGAGGGACGAGGAGAGGTATAGAGAGGACACAGGATAATAAGTGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTGCAAGGACTCAAGATCTATCTTCTTTTAGTGGAATGTCTACTCATTTCAGCTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTCATACTCATCCTATTTTCCTGTTGCTTTGCTCTAGAACTCTGCATCTGTTATCCAGGAGTGCGTGTCTTCTTGCCTTTTCAGTGTAAGAATCACCCTGTTTTTTCCTCCTTATGCCCCAGTAATGGGTGATCAGCCATCCCTTCACAACAATTAGGACTTTTCACCGTTTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGTAATCTCAATGAACTGGAAAAGAGAATTGCTGACATTTCTGCAAACATGCTTGATTTTTTTAAATGTATTTCATTTGCAAGAAATCTGGCAAAAGCATTTCTCATTTTTTTTTATGTAAGTATTTTATCTGATAAAGGGGAAGTTTAAAAGTATGGTGGATATCATGTATACTGAAAGTACTTATCGGACGATGAATAGACAAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCATAGCAAAAAATTAACCAGCAATACGTA -2: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.175566, "nevent" : 12397, "sequence_length" : 4584, "events_per_base" : 2.704407 } -6: scrappie: No basecall returned for /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 +16/19 Test #10: test_seqmappy .................... Passed 8.31 sec 2: ATTTTTTTAACAATTGGAAATTCAGTTTTTTGTATTTAACGAATTTTTTTATTTTCTAACTGTGAAAATATATTGGACGGTCGTTTTGTATATTTGGCATATTATTTGTAATATTTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCTGTATATTAATCATGCGATTATGAATAATGACGGTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTGCTTTATTGTCCTGGCTGAATATTCTTTACTGTTGGATGGAAGGATGTTAATGACATCAAATATCTTGTTAAGATCTCAATTGCAAGATTTTATATTGTATTATTTTTTTAGTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTCTTTACTGGTGATTTGACATTTTGTACCTGTCACCTGAGCAGTATTATCAGTGGTAGTCTTTTATCATATCATCTCTTGTTCCCCAAATTATCAAGTCCGTGCATCATTTATGCCTTTTGCATCCTCATATACTGATGAAGATGATGTTTGGTTTTCATTCTAGAGTTACTTCATGATAATGATCTCCAAATTCCATTCAAATTTGCTGAAAATGCATTATTTCGTTCCTTTTGTGGCTGGTAATATTCCATAGTGTGTGTGTGTGCCACTATATATATATATATCACATTTTTTTCTTTATTCACTCTTTGATTGTTGATGGGCATTTGAGCTGGTTTTCATATTTTTTCAGGTACAGAATTGCTGCTATAAACATTTATTTTCATTACGTAATCTATTTCGTATAATGACTATTCTGGGCCAAAGGTAGGTCTAAAAGATCTGCTTTTAGTTCTTTAAGATCTCCACACCTTTACATTAATGGTTATACTAGTTTACATTCCCATCAATATTCTTAAATTGTTTCCTTTTCACCAATCACCAACATCTATTGTTTTGATTTTTTTATTAGGGGCCGTTCTTTCAGGGTGAGTGGTATCCCACTGTGGTTTTTTGATTTACATTTCCCTGATCATTAGTGATGTTGGGCATTTTAATACAGGCCATTTATATCTTCTTTGGTGTCTATTCATGTCCTTAGCCAACTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCTGGATATCAATCCTTTGTCAGATGTATATATTAAGAAGGTTTTCTCCATCTCTGTCAGGTTGTCGTGACTCTACTGATTATTTCAGTTGCTGTACTGACTTTTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTCATTACATCTGCTTTTGGGTTTCTTGGTCGCGAAGTCTTTTGCCTAATAACCCAATGTCTCTAGAAGGTTTTCAACGTTATCTTCTAGAATTTTTTTATAGGGTTTCATCTTAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTTGTATAAGGTGAGGTGTTAGGGATCAGTTTCATTCTTCGACATGGCAGGTTACCAATTCAGTGTCATTTGTTGATAGGATATCCTTTCCCACTTCATATTTTGTTTGTTTGTTGAGGATCAGTTGGCTGTAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATGCCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGAGTATAGTTTGAAGTCAAATGTGATGCCTCCAATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGAATGATGGTGGTATTTTTTGATGAGGAATTGCATTAGTTGTAGGTACTTTTGGCAGTATGGTCATTTTCACAATATTGATTTACTCATCCATGAGATAGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAAATATATATATATATATATATATATTTGCAGCTAATGTAAAGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCGCCTTATACTTGAGGCTACTGATTTGTGTACATTAATTTTGTATCTGAAACTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTGGGTTTTCTAGGTATACGATCATATCATCCTTAAAGACTGGCGGATTTCACTTCCTCTTTACCGGTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCTGGCTAGGACTTTAATACTATGTTGAAGAGGTGATGAGCGGCACCTTGTCTTTGTTCGATCGCACGGGAAATGCTTTCTTTTCCATTAAATATAATGTTGTTGGCTGTGGGTTTTGTATCACAGGTGGTTTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGACTTTAATCATAAAGGATGCTGGATTTTTTGTCAAATATTTTTTTTCTGTGTTTGTGAGATGATCATGTGATTCTTGTTTTTTTAATTCTGTTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGGATTTTTTGCATCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTTTTGTTATATGTCCTTTCCTGGTTTTGATATTACAGTGATACTGCTTCATTGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAGCTAGGATTGGTACCAATTTTTTCTTTGAATGCCTGATAGAATTCAGCTGTGAATCCGTCTGGTCACAAACTATTTTTTTGTTTGGTAACATTTTGATTACTATTTCAATCACTGCTTGTTATTGGTCTGTTCAGGTTTCTATTTCTTCCTGGTTTTAATCTAGGAGGGTTGTATCTTTCCAGGAATTTATCTCCTCTAGGTTTTTCTAGTTTATGTGCATACAGGTGCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTGAGCTTATTTGGATCTTCTCTTTTTTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAAATAACCAGCTTTTTTTGTTTTATCTTTTGTATGTTTTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTTCTTTTTTTTCTGCTGGGTTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGGTGTGACCTTAGATTGTCTATTTGTAGCTTTTCAGACTTTTAGATGTAGGTATTTAATGTTATCAAGTTTCTATTTATGTAGGTAATGCTATGAGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCACAGAAAAAATACTATCTTCCCTTCATTTATATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTAGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCAGTTTTGATAGGTTGTGTCACTACTATTGTTGTTCAGTTGAAAGAATTTTTTTACATTTCTATCCTGATTTCATTGATGCCCAATGATTTTCTAGGAAGTTGTTAATTTTGATGTATTTGCAATGTCTTTTGAAGATTTCTTTTTTGGGGTTGATTTCCAATCTTAATTCCTGTAGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCTGTATATATTTCTATATTGGAGAATGTTCATGTGCTGATGAATAGAATGTATGTTTGCATTTGTTGAATCTTCTCCACATATCCTGTAAATCCGTTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCATTGGGTACTGAAGTCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATATAAATTTAGGGCTCCAGTATTAGGCTTACATGTTTAGGATTGTGATATTTTCCTGGATTCGTCCTTTTATCATTATAATGTCTCTCTTTGTGTTTTTTTACCGGCTGTTGCTTTAAGTTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTAGTGTCCATTTGCATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTAGTGAGTCTAGTAGAGACAGTAGATACTTGGTTAGTGAATTCTCCATTCTGCCATTCTGTATCTTTTTTAAGTGGAGCATTTAGGCCATTTACATTCAGTGTTAGTATTGAGATGAGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTTTTTTTAAATCATTGCATTATTGTTTTATAAGATCCTGTGAGAGGTTAAACGCAAAACAGACGCCGAAGACT 2: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.460068, "nevent" : 5787, "sequence_length" : 1698, "events_per_base" : 3.408127 } 2: CTCAGTGCATTAACCAACCTACCTTCAATGCTCCACCATCCAGCCTCGGTAATAATTACGCGCCCCTTCCCTTGAATCACCTTCACTAAAAGCCATGTTGAATCCCACAATGTAGGCCATCAGCTCAGGAAATAGAACATCAGCATGGGAGGTAGTAAGGCAGATGAAAAAATCATGCCTCTCATCAGTGCCAGTAGAATGACTCATTTCTCAATACCTAAAATAAAGAAATCGATGATTTACATGAGATCAGAATGGGCCGTAACAAACAGGTGCTCTGACAGGTGCCCAATCGATAGAGAACAAAGCAGGGAATAATGACTGGTTGACCAGAGCCAATCCTTCCATTCAACCCTACACTATTCCAATGATATTGTCACATATCACTTGTGTGCCATCAATATATTCAACACTTCTCCAATCCATATGGCCAACCAGATCAAAGGTGGCATCACAAGCCAAGGCCGGTGTCAGGAATTTCAGACCAAATATCATGCCTTCATCATTCAGTAGGTAGCGTATCTGCCGCTGTAAAATCAGACAAAGCCAGATCCGCCATAATGCTTCCTTCCACTCGGCCTCACTTCTCATCATTAAACCTCAGGCATGCCGAAATGGAACATGGAGCCCTAAAATGAATAGCCTCATCAGTGGGTAATCCCACTGTCATCTAATCAAAGGCCCCATACATTCATCAGAATAGAAATGGTGGTGGCATGGAACCCTTCTGAACAACATCTCAAATGCAGTGCTTCAATGAAGTAAACCTGCTCATAGGAGGCAGCTAAGCTAAAATCAGGAAAATTGCATGGTTACAAGCCCGCCGAAATGAATACAAAGCGCAAACCACTACCAGCCCCAGAATAATCAATAAATATACATAGCCAGAATCGAATAAGTCAGTATGACGCCGCGCTTCAATAGTAGCAATCAGATCAGCATTATTTATCCTTCAATCCAATAGGAAATTCCTTCAAATGCTAGACGGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAATGAGCTCAATCTCCATATTAATGCTTCATTGCCATCTCCACTATCATCCTTATTATTCTCAATAAAACCATAAACAAGTGAGGCCCATCCATAAATAAATGCAGCCATCCAGATAGCCTCAAAATAAGGCTGAGTATCATTCATTCACCCCTTGCCAATATTCTCATCCTTCCCTTCTCCATCCCAGCCATGCCATCTTAACATCGCTCAGCATTTTGATAGCGTAAATAGATAGGTCAATTTCAGAGCAGTCAAAATAAATAGGCTGGAAATCAAATGTGAGGCAGATGCCAGTGGAATGGTGGGCGCTCCATTGACACCACTTCCTCCAGCTCAATTTTCTCGATAAAAGAAATCGATCTGAACAATTTTGTTGCCCGTCGCTTATTCCAAATAGTGGCGCTGACTAAACACCGCTCAATGAATCATCATCAACCTTCTACTCGTACCAGATGCCTCATCAGCCAAAATCAAATATCCTTCAATAAGTGGGCAGTATGAATGGTGGGCCAATGGTACTATCAGCCAGAATGTTCTTCGAAAATAGTGACCTAAATGGAAAATTTGGCCTCGTACCAGTAAAATAAATTCTGACGAGCATCAGTGAAAAAAACATGTAGACGGATGGGTCGGCTGCCTCCAGCATTTCCATCTCATGAAGCGGGCGCATGAAA -17/19 Test #2: test_events_call ................. Passed 32.40 sec +17/19 Test #2: test_events_call ................. Passed 39.02 sec +6: scrappie: No basecall returned for /build/reproducible-path/scrappie-1.4.2/reads/MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 6: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.914597, "nblock" : 16158, "sequence_length" : 31, "blocks_per_base" : 521.225806, "nsample" : 81106, "trim" : [ 200, 80990 ] } 6: TCTGGTTTTTTATTATGTTTTATCTTCCATA 6: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.972209, "nblock" : 5778, "sequence_length" : 3087, "blocks_per_base" : 1.871720, "nsample" : 29150, "trim" : [ 200, 29090 ] } 6: GCTTCAGCATCTGCTGGGTCTTGTCTGCACATCGACAATGATTTCTGCCACTTTCAGCTTTTCACCGAATGTTTTTAGCCTTTTTCAGCCATAACCGCGATACTTTTTCCGTCAACGATAGTGGACACTTCCATAAAATCAACAGCTGCGGGGAAATCGTTGGTTTGAATCATGTTTCAGCAGATAAGCGAGGAATTTATCGGGAACAGAGGTCGCAGATAGCGACAACGTCTCTATTCCTTTGACTTCGCTGATGGACCAATACCAGTCGACCGATACAACCAGAACCGTTGATACCAACTTTGCTCATGGTTTTTTCTGAAACGTTGGATGAAATTGATCCCTTTCGCTTGAACCGGGATGGCGGGAATGACAATCTCCATTCGCATAAAACGTAACGTCTGGAAACGGGTAAACAATATTTTAATTGAAATTCAGAAAAAGCCCGTTTTAACAGAAAATTATGTTGCAAGCCAGAAATATTCTGGAAAATAAATATCAAGGTTACAAAATCAGCGTCACTGGCTGGTCTTTTTACTGGTTATCGCAGCGTATTACGCGCAATGAATTGCGTGGTTTTGCCGCGTGCGCACGATCCAGCCACTGCATGAGCATCATTCTCGCGCTTTCCTCTGGCATCTCGATTTTTGTGCTGATGGTCATCGCCTCTTTTATGAGGCTGGATACCCGACCGCCAGTACCTCAACAGAACCGATGATGAGCGGGACTGGCGCGTTTGCGGAACGTGCGTGGTCGCCACCTCTATTGTTGCCGCTGCCGGTGACTGGTTTTGGTAACGGGCAACCCGTGGTTGCTGCTGGTTTGACGATGCCTTACGCTCAAGAGGCCGATTTTCGAACGGGTAAAGTCACTAAATACGTGGCATGGAAACGCTGGCGAATCTGGGATGTTCCTGTCATCAGGTTAGCGCTGCGCTGCGCCTGGCACGCCACTATTCTGGAAAGGCGAAAGGCCGCTTTTGCGCATGATGCGGCGTTTAAGCCATCCTGAAGGATATTTAAAGAAACGCCCTGTGGAATTCAAAGCCATAATTATAAAGGAGATACAGATCTGTCACGGAAACGCCTGTGCTGTACTGTGTGATGGATGAAACCGTAATCCTTGCCCGTTACGTCATCTGGCTTCTTGATCCGCATTACACCCGATCTTTAATACATCATAATATCAAAATAAACCAGCGTCTTAAGTAATTTTCAGGATCAAACATAAATCGATAAACCATGGAGGTTGCTACATGAAAAAACTGGCTTTATTCTGTTTACTCGGAAACGTTGTTTCCTTTTATCCCGATACCGGGCGAAACCCCGCTCTGGGTTCGAAAGGGGGATCTGGCGCTGTTGCGGCAGGCGGCAAATTCTTTTGTGGTGATATCATACGCTCATGCAGCCAAAAAAGACAACATCAACTAACTAAAATGTGAAAAGGGTGCCATAAAAAATGGATACTGGCGGTCAAATAGCGGGAGAAAATCCCCGCGCTGTACTGGACATGCAGGCCATGAGCGCAGCAACCTCCTTGTCACCAGCCCCGGAGCCGGCATCGTAGAGCGTTTGTCGGGTCAGGAATGTAAATGTCAGAATCGTGATGCGGATAATGACAGACACGCACCAGCAGTTCCACGCTCGTAGCTTTCTGTCCTTGCCGGATGGCGGGTAAGGCCTTCAATCCTGAACTGCTGGTTCCGTTCGTTGGCTTCGATTAATGCGAAAATGTCGGGGCCTTCAGTTTCTGATCACCGGTTAGCCTGGAAACGGAAAGTGCGATATCCCGCAGGGCGTTTTGTAAGGTTTTATTCAGGGGACAAGAAATGATCATTTCACGAAATTGCGTGCTGTCTTCCAGAATTTTTCCATCGTTCGGGTTAGCCAGTTTTAGCCATCGTACTCTCTTCATTTCCAATAGCATTAATTTTCTATGCAATAATGTTGCTGAAGCATGATAACAAAAGATTTTGGTCAGTGATAATTACCGTCAATGCCAAATCGTTATCAGGAGTGAACCTGGACGGCGAAAAACAACCAATAATGAATGGCACTCCTCGCAGCGATTGGTTGCCGCGCATCGCGTCGGGTTGGTTCGTTATTGCCTGCGTCTTCGGCGGTATTTTTGACTATTCGCGTAAGTCGGCCTGGCTGGCTATTTCCTCTGGCAGGCCGATCACGATCAGCGTGGTCTGCCAGAAATTAAAATTCGAACCGGGTTAAAAACATGCAATTGTTGCCATCAGCCCGGATGCGGCGTGATCAGCCCGGGGCTGCAAGTCGTGTTACGGAAATGGAAGCGATGAACCAAATATCGCGCAACCAGATCGAAATTAAACAGTGGCAGCAGGTTATCGTGCTGCGGAATGGGCCGGTGAAAACACCTGCTGGTGAAGCCCTCCGACGCTGAATTAAATCAACGCTTTCAGGCTTATATCGCGGGTATTGATCCTGTATTGAAATATGCCAAAACTGGCGTATGAAGGCGATATCAATCATGAAAGCTGACAGACCCGACCGCTGGATAATGCTTATACCCGATATTTTGAAGCAGATTCGTCAGTCTGGCGGCTACGAAACGACGGCTGGCGGAACTGTAACCATCAGCGCACCCGCCTGGGTCGAATGCCGTGATTGGCGCGTTTGTCTTTGCCCTGGTCCTGCCTGACACTGATAACCGTTGTAGTGCTGCATCCAGATCATCATTTCGTCACTAAGTATTGCCGCGCAACAGATGAAGATTCGCCAGGTGGCAGTGAATGATGAACCAGCAGGTCGTAATGAAATCATCTTTAAGTCATCAGTCAGCGAATGCGCATTCACTGGGGATGACGGTCAGGAGCTGTTCGACGGGCGCGGAAGAGATTTATCATGGCACCAGCGAACCTGCGCTGGCGATGCGGACCTGTTATCTCGCGCTGGAGAACAACACGGCTATCGAAGCGACTGCCGCGCATCAAAACAACCACTCGTAACGGAAAACGGAATGCGGATAGCGCGCGTCGTGCCAGCAAAGCTGGCGCAAAGGCTTCTATAAGCCCAGCGATGGCGGGCAGACAGTTTCCGGTGTAGTAAAAGCGAAGCA -18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 34.42 sec +18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 45.58 sec 7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch174_read172_strand.fast5", "uuid" : "c99357df-c74f-4ac0-bb2b-10d0414866c0", "normalised_score" : 0.020645, "nblock" : 80790, "sequence_length" : 9342, "blocks_per_base" : 8.648041, "nsample" : 81106, "trim" : [ 200, 80990 ] } 7: CAGTTACGTATTGCTCTTGCCTGTCGCTCTATCTTCGGCGTCTGCTTGGGTGTTTAACCTGTCTTAACTAAAAATACAAAAAATTAGCTGGGTGTGAGTGGCACACACCTGTAATCCCCAACTACTCTCCAGGGGCTGAGGCAGGAGAATCCTTAAGCCAGGGCAGAGGTTGAAGTGAGCCGAGGTCTCACCTGCATTGCACTCCAGCCTGGGTGACAGGGTGAGACTCCATCTCAAAGAAGTATTATTAAAAATCAAGTTTCCCGTAATTATTTTAAGAAATGTAGGCTATAATTTCCTCCAAGAATAGATAATGTCTTTTACTGTTATTTGTTCTCTTCGGTACCTCATGGTTTCAGCATTTGGTGAGTATCTAATGAAAGCGTTCATTTAAGAATGTACAAGAAGCTATTTGTAGTAACTAGACCAGAGAAGACCTTGACAATATTTACTTTTCTCTAAGCTGCTAACCTAATGTACTGCAGAGGATCTTGCACATATGTATTACAGGAAATAAATGCTATGCAGATTTTATTAGTGTTTTATGTGATCTAATGTATGCATTTATGCCAGCATCAGTGAGTATGCATAGTTCAAGTAGTCTAACAGTTTTCCTAAGAATGAGACCCTTGAAATTCCTTTTAATCTTTTGATTATATGCTATTTCGCTTAGCATTAAAATGTATAGTGAAGAAGTTGTGGCATCGCAGGAGATAAAGTCTTTAGAAGGAGTAATATAAAAATGGAGTATGAACAAAATTGAAATCACTGCTATGAAGTTAGAAAATACTAGTTTGTACATATGTAAACCTGTACGATAATAAAAATATAAGCCATATAATTACATAATAAAATATGCCAAATATGTTACATACATTTTAATTTCATAACAAAGAGAAAGTGCTTAGAGTTGAATTCAAGTAGGTTCAAAGTGTGTTTGATGCATCCACAATATGCTCATTGTTAGAATTTGGATTGAATATTTTCACTTTTCATACAACTTTCTCACAAAGTTGATAAGTGTTTATTTTCTATTTTTGTATGTGCAGCCTCATATTTTGTCTTTTCTCTCGTTAGGAAGTATCATTTCAGCTTTCCATCCATTTTATTTATGGACATACTGTAGTGGAAAGACCTGTAACACAGAAACGTTGTTGAAAACTTGAGGTAAGAATAAAATATTAAATATTTCTTTCTTTTAGTGTGTGTAATATTGGTACTGATGGTGTGGATCTCCACAAATGCAAAATTAGAACATACCACCTTTACATTACTCTCCTTCCCATATTATCTTTCTCCGCGGATGTCTGCTGTCTTGACACAGTTGTCCAAACTTGCACTTTCTTAACTCTCTTTCCTCATCTTCCCTCCATTTTACAATGCAATCATCAATAAGCTTAGTCTGTTGCCTTCACATTGTTAAAATCATGTCTCCATCTACCTTTAATCTAGCCATTGCTGCTTTAAGTTTTTCATTCTATTGTTTTTCCATGTATTTCTGTAAGCCTCTTATTTGCAAATCTTCACCCCACTTGGCAGCTAGGCCATGCAAATCTTAATATTTTCAGGACAGTGTTCAAATGCAATTCGCCCATTGTATAAGACCTTTCCTTGACTGGTTATCTTTCATAACACAGTGGTTAAGAGTTTGGGCTGTGGAGTCTGGCAGACTCATGTTCCTTTTTAGTTCACCAGTTGAGTGCTTTCTCCATCTGCAAAGTTGGCTCATGGTGCTCTGCAATTACATAGTGCGTAGTAAGCACTCAATGTAGCTGCTGTATTGATGAGTATTGCCATACTCACGCTCATATCTAAACCAGAGATGGCAGTCTTTCTTTAAGGGCCGGATAACGAACATTTTGTGCTTGTGGACCACGTAGTTTCTGTCTCACCTGCTTGACTCTACTGTATTGTAGAAGCAGCCATGGGCATTCTCTATGTGAATGGGCATGACTGTGTTTCAAAGCAACAGTATGTGCAAAACAGGTGGCTAGCCCACAGGCTTTGGCCTCCTCTAGCACTGGGGATGCGTTTAGGATAGCATACTGAACTAGTAATGCAGTTCCTGCTGTCTTACTTTCAAGCCATGGCACATGTTGCTCCCCTACTTGGAATGGCTTTCTGTACTCACTCTTCCTGTTGCTTGGCAAATGCTTATTTATTTTGCCAGGTTTTCTTCCTTATACTCTACAAGGTCTTTCCTGATCCTCTGAGCTGTATCAGATGCCCCCTGTTTTGCAACCTTAGCACCTGTGCTTAATTCTGTCATAATATTTAGCCTTCTCAGCTATGATTTTGTGTTTATGTTTCCCTGACTTTAGATTGTGAGTTTCTTGAAATTATCCCCAGCACCAAGCATTGCTTGGCATGTATTAACTTGTAGATTTCAATTTATTAAGTTGTAGCCAGATTTCGAGCTTTGATCTCAAGATCAGCTGTGCATTTAAAAACACATATGCCTGGGCCTATATGCTGGACTTCAGAGATCTGAGTGTACAAGGTCTTGGTCAGGCATTTGCATTTAGAACCCCCTGAATGAAGTGCCCCAAAATATATGTTGAATAAAGCAATAAAACCCAGTAGGAAGTTTCATGTTAGGACTGTATTCCATTTTTATCACACTGTAGTTTCTGCATTTACTTAATCAGTGTAATATATGATTATTGTTACTACTTCTGATACAGGGACTCAGACGAGGCACTTAGAATATGCTTTGGCTTTAAAAGTCATGGATGGGTACAAATGCCGTAATAGGAACACTATTCACCAACAGAGATGTTGTGGACTTTTGTTCTTAAAGGACAGTAAAGGAGTGAGAAGTGAGTTAGCAAATGCTGGTGAAACTGTCCCCAAGTAAGTTTAATGTGGCTTTATTGACACTGTTATTCAGAGAAAGAAAAAGCCTCCTTATTGGATAAAGTTTATAAAATCACTAAAGAAATAGTTACCCAGTTCCATTATTATTTGTACCAGAAGTGCCACAAGTTATCTTCCTCAGAATGAATCTGCTTTTGTGATCTTATTTTGAGGGATAGACTGTATTAGTGAGCAAGTCTCGTTTGTGACCTTATTACTTCTGGAGTTAACTCATGTTGATATTTTTGATAATTTTTAAATAGAGGGCCTAGTTTTTGTTTTGTTTTGTTTTTAAATGGGGTCTTGCTCTGTGTGCCCAGGTTGGAGTGCAGTGTTATGGTCACTTAGCTCATTTAGCCATGAATTCCTGGGCTCAAGTGATACTTCCCTCAACTCCCAAGTAGCTGGGACTGTAGATGTGCACCACTTAGGCTAATGTCTAATTTTTTACTTTTAAGACAGAGAGTCTCACTGTGTTTCCCAGACTGATCTTGTGAACTCCAGGTCAAATAGTCCACACTCCCACCCATCCTAGAAGCACTGGGATTACAGGCGGGAGCCCTTATGCCTAGCAAAGAGCTAGTGCTTACAGTCCTCGTAGGAGGATTGCTATGGTTTCTAACTCTTAAAATTCTTTTTTTGACTTAGTAAACGTTTAATTTAAAGTTATAAGTGTGAAATTCCTATTAAGATTTTTAACATTCAATATGCTTGATTTCTTTTCTTTTTTTAATAGTGACAGAGGTCTCTTGCTATACCTGTTGCCCAGGCTGGTCTAGAACTCCTGACCCAAAGCGGGATTACAGACATGATGATCCACCATGCCTGGCTGATTTCTTTATAAAATTCTTTATAGGAAAAATACAAATTTGCTTTGATTTCCATAAGAAAGAAATGGCAAGCTGAAAAGGCAAGTGGAAGGTTTAATGAAGGGACAGTTTTATAATGGAAATTTTATAGAGATCACTAAGGGATGATGGTACACAGGGCCTTTACCACCCTCCAGGCCTGGAAGGGACCATAGGAAGAAAGGAGCTGTTATTGGAACCAAACAAGGGTTAGCCTTAGAGAGGGCTGTCAACTTGAGTCTCTTTGGTAGAAGAGTATCCACTGCCAAGCTAGGGCCACTGAGGGGTCATGGTGGGAGTCAAGAAATCAATATCAAACTTCTCTCCCACCATTCTCCCTTAGTCTCCTGGCTGGTTCTTTCCGTGGCTTCTCCATCCAGAGACAAATAAGAGAGTCAGGTGATGTAATTCTGTAGCTGTCAGGCTCTTGGGCATGGGATTGGGTTTGGTGGGATATAGATTTAGAAAGACAAATGGAACTATCCAGCACAGCCATTATTGTGTTTAGTATGTTTTCTTCTTTACTTACAGTGTTTTGGTTTTCGTTTTCAGCTCCCACACATGTGTTTGTGAATTGTGTTGAATGCTTTACATTGAGGGCTGCTTTTGGAACAAATTTTAAACAAATTGAATCATCTTAGTTCTTCAGGATGGATGTTCTACTAAATAACCTGTGAAGCATTTAATGACTTTGTTCCTTGTTTAAACAAGTAAAAACCACAGCTAGTAATCTTAAAGATCGGAGCTGTATATATGTAAATATTCCGTTTGATTAGATCATCCTCTTATCTTGAAAACTGATAATTTATTAGATCAATTTTCATATATTTGTTTAGTCTCATTATGTACAGTGCTCTGAAGTGCCAGGTGCTTTTAGTATGAAATGTATTAAATATAATTCCTTATCAAGGGAAACTTCATTTTAATAGAAAGGTATGACACATACATACATTACATGCAGAATGTGATAGAATGATTGTCACCAGATGCAAAATATTGACTGTGTGTGTCCAATACAGCTTCATGAATTATTAGCATTGCGAGACAGACCTAAATGAATCAGGTATTCTAGGAAGAAGTGAAGTAGAGGAATTTCAGATAGAGATTATATAAGTGAAGTAAAGGCATGCAGCTGAAAATGGAGGCCAGAGTACCAAATAGTCTGGATTTTAGTGGGTTATAAAGTATGACGGGAGAAAAGAAGACTGGGAAGATGGGTTGGGCAGATTGTGGAAGGTCTAAGAAAACTATACTGGAAGCACTTCATTTAATTTCTTAGGAGTGGATAGGAGATAAGTAAGACTTTAGAGTAACAAATATGCCTGTGGACACTCTGAAGACATGTTAAAATGATCATCTTTGGAATTTGAGTAAGAACTACAAGAACTGGGATAGTTTATAAAGGAAAGAGATTTAATTGACTTACAGTTCAGCGTGGCTGGGGAGGCCTCAGGAAACTTATAATCAGCAGAAGGCAAAGGGAAGTAAGGCACCTGCTTCACAAAGGAAGTAGAAGGAAGAAAGGAGCTCCTTATAAAATCGTCAGATCAGATGTAGACTCACTATCACAAGAACAACTTTAAGCATGGGAACCACCCCAAGATTCATTTGCCACCTCCCACCTGGTCTCTCCCTTACCCGACACATGGAGATTATGGAGATTACAAGTTAGGATGAGATTTGGATGGGACGAAGCCCTGACCACACACCATTCCACTTGGCCTCTCCCAAATCTCATGTCGGTTTACTCACATTCCCAAAGTCAACTGTGGCTTCCCAATGGTCCCCAAAGTCTTGCTCATTCCAGCTTAATTAGCCCAGAAGTCCAAGTCCAAAGTACTCATCTGAGATAAGGCCAAAGTCCCTTCCATCTATGAGCCTATAAAATCAAAGAAGTAAGTTAGATTACTTTCTAAGATACAATGGAGATACAGGCAATGGGTAAATACAGCCTTTTCAAATGGGAGAAATTGGCCCAAACAAAGGGGCTGTAGGCCCCAGAAAGTCTGCAATCAATAAGGCAGTCATTAAGCTTTAAAGAGTTCAAATGATCTCCTTTGACTCCATACTCAACATCCAGCCCACTGATGCAGAGTGGGCTCCCACAGCCTCATGCAGCTCGACCTCTGTGGCTCCATGCCTCACATCAGCCCACTGATGCAAGAGTGGGCTCCATGGCCTCGTGCGCTCCACCTCTGTGTGGCTTTGCGGGGTACAGTTTAACCTCTCTGCTGTTTTCACAGGCTGGCGTTGAGTATCTGTGGCTTTTCCATGCACACAGTGCAAGCTGTTGAATCACCATTCTGGGGGTCTGGAGGATGGTGGCCCTCTTCTCATGGCTCCCACTAGGCGGTGCCCCGAGTGGGGACTGTAGGGGTCCAACTGCCCCACATTCCCCTTCTGTACTGCCCTAGTAGGGTTCTCCGCAGGGCCTGCCTACAGCCAACTTCTGCCTGGACATCCAGGCATTTCTATACACATCCTCTGAAATCTAGGCCAGAGGTTCCCCAAACGTTAATTCTTGATTTGCTGCAATGCTGTTACATGTAAGCCGCCAAGGCTTGGGGCTTGCACTCTCCTGGAAGCCCTGGGCTATACGCTGGCCCCTTACAGCCATGAGTGGGGATGCCAGGACGCAAGTTCCCGAGACTGCCAAAGCAGCAAGGCCCTGGCCACAAAACCATTTTCCCTCTTAGGCCTCTGGGCCTGTAATGGGATGGGCTGCCACGTGAAGACCTTGGAGACATTTCCCAGCGTTGTCTTGGCTGTTAACATTTGGCTCCTTGTTACTTATGCACATTTCTGCAGCTGGCTTGGATTTCTCTCCCAGAAATGGGTTTTTCTTTCACCTCATGGTCTGGCCACAGATTTTCCAAGTTTTATGCTCTGCTTCCTTTTAAATGCTGGTTCAGTTTTAGATAATCTCTTTGTGAATGCATATGACTGAATGCTTTCAGAATCAGCCAGGTCACCTGTTGAATGCTTTGCTGCTTAGAAATTTCTTCCACCAGATACCCTAAATCATCTTTCTCAAGTTCAAAGTTCCACAGATCTCTAGGGCAGAGGCAAGAATGTACCCTTCTCTTTGCTAGAGCATAAGCAAGAGTCACTTTTATTCTAATCCCCAATTAGTTCCTCATGTCCATCTATGACCACCTCAGTCTGTACTTCATTGTCCATATCACTATCAACATTTTGGTCCAGCCATCTAACAAGTCTCTAGGAAATTTGCAAGCTTTCCACTTCTTCTGTCTTCTGAGCCTCCATCCTGTTCCAACACTGCCTATTACTCCAGTTGCTATAGCAGACTACCAAGGACTAGGTAATTTATAAAGAAAAAGACATTTATTTCTCACAGTTGGCTGGAGGTTAGGAAGTCAAAGGTTGAGGTCCCTACATCTGGCAAGGGCTTTCTTGCTGCTCTCATGATGAAAGTAGAGTACAAGGAGGATGAGAGTGAAACAGAATTGGCAGAATCCTTTTATAATAAAGCCATTCTCAATAACCCACTCCCTTGGTAACAATATTGAATTATTCATTCATGAGGACAGAGCCCTTATATGGCTTAATCATCTTTTAATGCAACCTACTCTTCCAATACTGCCACACTACAGGATTAAGTTTCCAACACATGAACTTTGGGACATAGTCAAATCATGTCATTTGTAAAGGCTTTATAAATGCATTTCTTTTTGTTTGTTTTTGTTTTTAAGGTTCTAGATAAAGCAGAGTATCTAAGAGATATGGGAAGCAAATCTTTTGCCTGGATTTCTTAGATTACAAATTGGTAAGAAATAATGTGGTACTTTCTCCCACAACTTAATCAATGGATTGTAGGTGTAAAGTTTTTCATTTTGCTATATTTGATAGGTGAGAATTAGTATTTTAATATAATTTTAGTTTTTGCATTTCTTTTATCGAGTAAGCTCAGTGTTTTCATAGTAAAATCAGTTGGTGATTTGTTAGCATTTATTCTTCAATTATTTTAGCTTTTTCTCTGTAATTGTAAGTCACTGCTTTCTATTAAAAGTTTTAGATGTTGCTAGAATAAATGTAGGCCAGACTTTAAAATCTCTACCCAAGAATTTTCTTTGCACATTTCCATCTTCTGGGATCATCTAGTTTCTACCTTATAATCACTCAGTGTCAGAGTTTACTTTTGTATTTCAGTTTACTCTTGTGTTGGCTTCATAAAGTACGTAGTCCTCACTTAACATCTCAGTAGATTCTTGGAAATTGCAACTTTAAGTGAACTAGCCTACAGCAGGTTCTTCCTTACCTTCAGCATCATTTCATTATAACATTGTTGAGGAAAAAAATTGGTTTCATTATATGTTGCACTTAAAGTCACAGTTTCCCAGAACCTATCAACAATATTAAGCGAAGGGTTACTAATTGTTCACTGTGAATGTCATGGCCCAATAAGAAAGGACAGGGCGGACTTACTAGGCATTTGTGTCAGGTGAAAGCCAAATATTATCACCAGATGGGAAACAGGGTTTGTAATAGTTTGAATAGGAAAATTGGTGGGGAAATAGCTGTAGTTGTTTCCAGGTGAAATATATTCACCGTATTCATAAAGGAATAAAAGATTTAGTTTAGACAAAACAATGCTATTCAATATATTCAGTTAATGTGGTATTTCAATTTTATTGGTTCTATAGTTCGTATTTATAAATTTATTTTGGTTTATAATTTTGTAAGTGCTTTGAGTATAAGCAGTTTATACCTACCTAATTTTATGTTTAAAGTATTGACAGTAATATTATAATAAAGTAAATACTTGGGAGAAGTGCTTAAACATTTCTGCCTTTCAAAAATTAAATACATTACTCAAATTTGAGAATCTGCTGGAAGTTTAGAGGCCACTGAGAATTACTGTGGTGCTTAAAGGCTTTGACTCACAAGTTTACTTTTTAGTAATAGTTGAGGGACGAGGAAGAGGTATAGAGAGGACAGGATAATAAGTAGCAGCTATTGGTGGCCCTATTCTGGAAGTTAACCTCACACAGTCTTGCTTTTCTTTGTTTCATTAACTCTTGACATTTTATTACTGAGACTCAAGATCTATCTTCTTTGGTGGATGTCTACTCATTTCCCCTGTTTCCTTTCCTTTTATTTATTTGTTTCATTTGTATTTGTGGGTTTTCATACTCATCACTATTTCCTGTTGCTGCTCTAGAGACTCTGCATCTGGTATCCAGGAGTTGGTATTGTCTTCATCTTGCCTTTTCAGTGTAAATCACCCTGTTTTTCCTCCTTATGCCCAGTAATAGGTGATCGTACATCCCTTCACAACAATTAGGACTTTCACCGTTTTGGTTTCAATTACAGAAACTGTTTGAAGAAAATTAAAAGATTTAGAGAGTAATCTCAGCTGAACTGGAAAGAGAATTGCTTTTGACATTTCTGCAAACATGTGATTCTTTTTAAATGTATTTCATTTGCAAGAGGAAATCTGGCAAAAGCATTTCTCATTTTTATGTAAGTGTTTATCTGATAAAGGGGAAGTTTAAAGTATGGTTGGATATCATGTATACTGAAAGTACTTATCGGACGTGAATAGATGAGAACAGGTTAAACACCCAAGCAGACGCCGCAATATCAGCACCAGCAAATTGACCAGCAATACGTGATA 7: >MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5 { "filename" : "MINICOL228_20161012_FNFAB42578_MN17976_mux_scan_HG_52221_ch271_read66_strand.fast5", "uuid" : "06c8e9fa-170e-4fcc-9050-c98f8880cad7", "normalised_score" : 0.012573, "nblock" : 64090, "sequence_length" : 4696, "blocks_per_base" : 13.647785, "nsample" : 64395, "trim" : [ 200, 64290 ] } 7: GGTATTGCTTCGTTCAGTTACGTGTTGCTCTTGCCTACATCGCTCTATCTTCAGCGTCTGCTTGGTGACATACCCATGAAACTATAATTTTTTAACAATTGGAAATTCTTCAGTTTTTATGTACAACAATTTTATTTTCTAACTGTGAAAATATATGGACATCTGATTAGTTTTGTATATATTTGGCATATTGTTTAGCAATATTTTCAATTTACTTACTAATTCTCAGCATAGATTCTTATGGGACTGTCGTATGTAATCATGCGGTGTGAATAATGACGGTTTATTTATTTCAAATTTTCATGCCTTTTATTTCTTTTGCTTTATTGTCCCTGCTTGGCTAGATATTCTTACTGTTGGATGGAAGGATGTTAGCTGACATCCGTATCTTATTTAAGATCTCAAATTGCAAGATTTCATATTTATTATTATTTTTAATTATTTCAACAGGTTTTGGGAACTGGTGATGTTTGTTACATGAATAAGTTTCTTTACTGGTGATTTTGACATTTTGTTGTCTCATCACCTGAGCAGTATTGCACTGTATCCAGTGTTGGCAGTCTTTTATCCCTTATCCTCCTCTGTTCCCCCAGAACCCTCAAGTCCGTTAACATCATTTATGCCTTTGCATCTCATAATTATACTGATGAAGAGATGATGTTTGGACCATTCCTGGAGGTTACTTCACTTAGAATGTGATCTCCATTCCATTCAAATTTACTTTTGAAAATGCATTATTTCGTTCCTTTTTATGGCTGAAGTAGTATTCCATAGTGTGTGTATTGTGTGCCACTATATATATATATATCACATTTTCTTTATTCACTCTTTGATTGATGGGCATTTGGGCTGGTTTCATATTTTTCAATTGCAAATTGTGTGCTGCTATAAACATATTACCTAGCATATACGATACGTATCTATTTCGTATAATGACTTCTTCTGGGCCAAAGGAGTAGGTCTAAGATCTACTTTTAGTTCTTTAAGGAATCTCCACACCATTTCACATTGTGGTTATACTAGTTTACATTCCCATCAAACATTCTTAAATTGTTTCCTTTTCACCAGTCACACCAACATCTATTAGTTTTGATTTTATTAGGGGCCATTCTTTCAGGAGTGAGGTGGTATCCCACTGTGGTTTTGATTTGCATTTCCCTGATCATTAGTGATGTTGGGCATTTTTAATAGTACAGGCCATTTGTATATCTTCTTTGAGGTGTCTATTCATGTCCTTAGCCAACTTTTTGATGGGATTGTTTGTTTAATTCTTGCTGATTTGTTTGGTTCCTTGTCAATTCCTGGATATCAATCCTTTGTCAGATGTATATATTAGAAGGTTTTCTCCATCATGTGGGTTGTCTATTGACTCTACTGATTATTTCAGTTGCTGTGCTAAGCTTTTAGTTGAATTAAATTCCATCTATTTATCTTTGTTTTTCATTACATCTGCTTTTGGGTTCTTGGTCGCGAAGTCTTTGCCTAACCCAATGTCTAGAGGTTTTTCAACGTTATCTTCTAGAATTTTTATAGGGTTCTCATAGATTTAAGTCTTTGATCCATCTTAAGTCAATTTTTGTATAAGGTGAGGTGTCAGGGATCAGTTTCATTCTTCGACATGCTTGGGTTTACCGAATTATTCAGTGTCATTTGTTGATAGGATATCCTTTTCCCACTTCATATTTTGTTTGTTTTGTTGAGGATCAGTTAACATAAGTGTTTGGCTTTATCTCTTGGTTCTCTATTCTCTTCCATTGGTCTGTATGCCTGTTTTATACCAGTACCATGCTGTTTTGCTGATGATGGCCTTAGGTATAGTTTGAAGTCAAGTAATGATGCCTCAGATTTGTTCTTTTGCTTAATCTTGCTTTGGCTATGAGCACTCTTTTGGTTCCATATGAATTTTAGGATTGTTTTCTCGTTCTGTGAAGGAATGATGGTGGTATTTTGATGGGAATTGCATTGGAATTTGTGGGTGCTTTTGGCAGTATGGTCATTTTCACAATATTGATTTTACTCATCCATGAGAATGGGATGTGTTTCCATTTGTTTGTGTATGATTTCTTTTTCAGCAGTGTTTTGTTGTTTTCCTTGTATAGGTCTTTCACCTCCGTGGTTAAAGTATAGTCCCAAATATATATATATATATATTTGCAGCTATTAATAAAGGGGGTTGAGTTCATGATTTGATTCTCAGCTTTGTTGCTATTCATGTATACTTAGGGCTACTGATTTGTGTACATTAATTTGTAATCCTGAAACTTTGCTGAATTCATTTAACAGTTCTAGGAACTTTTGGTTGAGTCTTTAGGGTTTCTAGGTATACGATCATATCATCAGCAAAGACTGGCAGTTTCACTTCCTCTTTACCGATTTGGATGCCCTTTATTTCTTTCTCTTGTGTGATTGCTCCTGGCTAGGACTTCAATACTATGTTGAAGAGGTGATGAGCGTAGGCACCCTTGTCTTTGTTCGATCGCACGGGAAGTAACAACTTTTCCCATTAAATATAATGTTGTTGGCTGTGGGTTTGTCACAGGTGGTTTTATTACCTTAAGGCATATCCCTTCTACGTGGATTTTGCTGAGGGACTTTAATCATAAAGGGATGCTGGATTTTTGTCAAATATTTTTCTGTGTTTATTGGGATGATCATGTGGTTCTTGTTTTTAATTCTGTTTATGTTGTATATCACATTTATGGACTTGTGTATGTTAAAGCATCCCTGCATCCTGGTATGAAACCCACTTGATCATGGTAGATTATCTTTTAATACGTGGTTGGATTCAGTTAGCTGAAGTATTTTATTGAGAGTTTTTGCATCCTAGGTTAATCAGTGATATGGGTCTCAGTTTTATTTTTGTTATGTGTCCTTTCCTGGTTTTGATATTACAGTGATACTGGCTTCATTAGATGATTTAGGGAGGATTTTCTCTTTCTCTGTCTTTTGGAATAGTGTAACTAGGATTGGTACCAATTTTTCTTTGAATGCCTGATAGAGATTCAGCTGTGAATCCGTCTGGTCCTGGGCTTATTTTTGTTTGGTAACATTTTGATTACTATTTCAATCTCACTGCTTGTTATTGGTCTGTTCCAGGTTTCTATTTCTTCCTGGTTTAATCTAGGAGGGTTGTATCTTTCAGGAATTTACATCTCCTCTAGGTTTTCTAGTTTATGTGCATACAGGTGTTCATAGTAGCCTCAGGTGATCTTTTGTATTTCTGTAGTAACAGTTGTAATATCTCCCATTTCATTTTAATTAGGCTTATTTGGATCTTCTCTTTTTCTTGGTTAATCTTGCTAATGGTCTATCAGTTTTGTTAATCTTTTCAAATAACCAGCTTTTTGTTTTATCTTGTATGTTTTGTTTCAATTTCATTTAGCTCTGCTCTGATCTTGGTTTTTCTTTTTCTGCTGGGTTTGGGTTTTGGTTTGTTCTTGCTTCTTTAGCTTCTTGAGGGTGTGACCTTAGATTGTCTATTTGTGCTTTTCAGACTTTAGATGTAGGTATTTAATGTTATCAGTTTCTATGTAGGTATAATGCTATGGATTCTATTCTGGTGTATTTCGAGGATTTGTTTCAAGATTTAGAGCTCCTTTTAGCAGTTTTGTAGTGCTCAGTATTTGTCTGAAAAATACTATCTTCCCTTCATTTATGAAGCTTAGTTTCACTGGATACAAAATTCTTGGCTGATATTTGTTTGGTTTAAAGACTACCGATAGGACCCCAATCCCTTTGTCTTTGCTGTATCGGTTTTGATAGGTTGTGTCACTACTATTGTTCAGTTGAAAGAATTTTTACATTTCTATCCTGATTTCATTGTTCACCCAATGATTTTTCAGGAACAGGTTGTTAATTTTGATGTATTTGCAATGTCTTTGAAGATTTCTTTTTGGGGGTTGATTTCCAATCTTATTCCCTATGGTCTGACATAGTACTTGATAAAATTTTGATATTCTTAAATTTGTTGAGACTTGTTCTGTGGCCCCTGTATATGTTCTATATTGGAGAATGTTCCATGTGCTGATGAATAGAATGTATGTTTTGCATTTGTTAGGTGAATGTTCTCCACATATCACTGTAAATCCGTTGTTGTAGGGTGTAGTTTAAGTACATTGTTTTCTTTGTTAACTTTTCTGTCTTGATGATCTGTCTAGTGCTGTCAGTGGAGTACTGAAGTCCCCACTATTGCTGTGTTGCCATCTATCTCATTTCTTGGGTGTTGTAGTAATTGTTTTATAAATTTAGGGCTCCAGTATTAGGCACTTACATGTTTAGGATTGTGATATTTTCCTAGGACTAGTCCTTTTATCATTATAATGTCTCTCTTTGTGGTTTTTACCGGCTGTTGCTTTAAAGTTTGTTTTGTCTGATACAAGAATAGTTATTCCTGCTTGCTTTTGTGTCCATTTATGGGATATCTTTCTACCCCTTTACCTTAAGCTTATGTGAGTCCTTGTATTGGAGGCTGAGTCTAGTGAGACGGTAGATACTTGGTTAGTGGTATCCATTCTGCCATTCTGTATCTTTTAAATTGGAGCATTTAGGCCCATTTTACATTCAGTGTTAGTATTGAGATGTGAGGTACTATTCTATTCATCATGATATTTGGTGCCTGAATACCTTGGTTTTAAATCATTGCATTATTGTTTATAAGATCCTGTGAGAGGTTAAACGCAAGCAGACGCCGAAGATG 7: >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0", "normalised_score" : 0.041418, "nblock" : 28890, "sequence_length" : 2268, "blocks_per_base" : 12.738095, "nsample" : 29150, "trim" : [ 200, 29090 ] } 7: CGGTGCGCATTCAGCCAGCCCTACCTCATTCACCAGTATACCAATCCAGCCTAAGCGCCGGTAGTAAATTACGCCCTTCCGCCGAATCGCCTTCACAAAGCCTTGTTAGTCCCACATGGCCAGTGGCCGGATTGTCGGCTCCGTTTCGGAATGGACGTGGATCTAGTGTGATTGTTGGGAGCGGATGGAAAATCAGCGTGCCTCTCCACCAATCGATCATCGGGTGGTGCGGTGGATGATCGTTACTCGCCAATACAGATGAGAATCCGTTGATTTTGCAGCTCGATTGGGATCGGATGGTGCATTAATAGACCGGGTATCTGAACGGTGATGAATGGGAGAGACAGTGGAACCGGCATTAGGCGGGATAATGGGCGGTTGGAAGAAATGGAATGATACGGCTCATTCAATTTCACTTCATTCACCGTCATGATGAATGGTGTCGCATATCGCTTTGATGGCATCAGTATAATTCCGCCTTCTACCGATATCGAATCCAATAATTAGTAGGTGACTCAGCTGGATCAGGATTTGACGTCGCGGGTGGATGGGATGGGGTTTCGGATATTTGGAATGTCATTAGCCACCTCGGCTGCAGTGTCGTTTCGGTGATGGTGGTGGGGGGTGTGAAATCACCTTCGTCTCGTTGCGCCGGGAGAGGCGTTCAGATGGGGGTGGAAACGGGATCTGGGTATCGGACGAAAGGAGTGGATCAGCATGCATCGATTAGGCTGCATTTCCGCTCGACATGAAACGGATGACTAGCGTAGATCATTGGTGATGGGTGTGGGAGGGTGACATCAGATGGACTTGTAGTCTGGGATTTGGGTCCTAAAGTGGGATGACATACTCTGCATATCGTCGGTGGATCCGCTTGTGCGTGTCTGCTGTCAGAGATTTCGTGCGTTCAATGCGGTAATGGATGGATAAATGGTGGATGGTGGTTCGTTGGCGTGGAGCGGGACCTTTCACTGGGATGATACCTCCGGTGCGGTTGAACCTCGGTGGGTGCGATTCTGCGGTGGATTCTCTCGTCGTGCGGGTAATAATGATTTCGACTGGAATCGGAGGTGTGGAGTGGGTTTTGGTGCCGGATGGGTGGAATTCTCTCGTTGGCGTAGATGAGTGCGCTCTGCCGGTTTGGATGGTCATTGGAAATGTGCATGATGGGGATCAGGATGGATGGTCGGTGTGGGCCCTGTGCTTCATGAGTCGGTGGAAGACGATCGGATCAATTGTTGTCATTTCAGTCAAATGGAATAATTTGAGAATTTAAATTCCCAATTGAATTAGCCTGGATGGACAGGTAGAAAGCCTATGAAAAGCCCATGAAGTGGATGACTGGATCAGTCCTACCAGAATCGTATTAGTATTTCATTATGTCCTTCCACTAATAGATATTATTGATTATCTCCGATAAAATATATGAATGGGTGTGGATTTGTCATAAATCATTGTATCCGTTATTATAAGGAAATCGTTTGGTTGAGGGTGTCGTTGGCTCACTTGTACTTAGTATTCGTATATTAGTCATTTCCCTTTATCATCCCCAGTGTATACAATCTTAGCATCATCGTAATTTCGTTCATTCACCCACATTTTTGATGGCGTAAATCTCATAGAATAGATGGGTTGGGATTTCAGATGTCTGCATGGCCCGGTCAGTATGATGAACGGAGTATCAGATCATGAATCGGATGGTGGATGGGTCGGCCGATTAGATGGTTGTATTATCTCCCAAGAATGGACGTGGAGTGACAAATGGTAAGATGCAAGATGGATTGATACCAGCTTCATCAATCTAATTTTTATAGAATAAGAAAGTCGATCTGGGTGCCGACCGTGAACAGATTTGGAACGCTTGTCAGCCTTACTTATTCTCCAGATAGTGTATAGGTGAATGGTACAGGATAGAATATATGTGCCAGCTCAATCAGATCGTAAATCGTTATTCTTCAAATATAGTCTTAGTCATATTTACTCATCTGACCGAAATCAGATATCTTCAATATAGCGGCAAGTGGATAATGACAGTGTAGATGGTGGATGATAATGGAATGTTACTATCAATGGCGAATGAACCTTTCGAGAAATGGTAGAGCTAGTAGGTGGGAGAATTTGGCCTCCGTACCAGATAAATTTCAAATAAATTCATCATGGGCGGCTGGTGAACGCATCAGTGGAAAAACATATGGATGGATGGGATCGTATCGATGGTGAGCTATCAGCGAATCAGTGGCATTTCCAATCTCATGGGCGGGTGAAGGT -19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 87.58 sec +19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 111.63 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 93.22 sec +Total Test time (real) = 136.67 sec make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_plain' - rm -fr -- /tmp/dh-xdg-rundir-bnyflaSj + rm -fr -- /tmp/dh-xdg-rundir-prZ5tx5B make[1]: Leaving directory '/build/reproducible-path/scrappie-1.4.2' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake @@ -403913,7 +403949,7 @@ dh_auto_install --builddirectory build_${SIMD} ; \ done install -m0755 -d /build/reproducible-path/scrappie-1.4.2/debian/scrappie - cd build_ssse3 && make -j6 install DESTDIR=/build/reproducible-path/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_ssse3 && make -j5 install DESTDIR=/build/reproducible-path/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' /usr/bin/cmake -S/build/reproducible-path/scrappie-1.4.2 -B/build/reproducible-path/scrappie-1.4.2/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -403927,7 +403963,7 @@ -- Installing: /build/reproducible-path/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_ssse3' install -m0755 -d /build/reproducible-path/scrappie-1.4.2/debian/scrappie - cd build_sse3 && make -j6 install DESTDIR=/build/reproducible-path/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_sse3 && make -j5 install DESTDIR=/build/reproducible-path/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_sse3' /usr/bin/cmake -S/build/reproducible-path/scrappie-1.4.2 -B/build/reproducible-path/scrappie-1.4.2/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -403941,7 +403977,7 @@ -- Installing: /build/reproducible-path/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/reproducible-path/scrappie-1.4.2/build_sse3' install -m0755 -d /build/reproducible-path/scrappie-1.4.2/debian/scrappie - cd build_sse2 && make -j6 install DESTDIR=/build/reproducible-path/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_sse2 && make -j5 install DESTDIR=/build/reproducible-path/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/scrappie-1.4.2/build_sse2' /usr/bin/cmake -S/build/reproducible-path/scrappie-1.4.2 -B/build/reproducible-path/scrappie-1.4.2/build_sse2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -404009,21 +404045,21 @@ chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/5d/71b65e18ef0d4c4080ad569f50918442576793.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-sse2 objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/5d/71b65e18ef0d4c4080ad569f50918442576793.debug debian/scrappie/usr/bin/scrappie-sse2 - install -m0755 -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/d2 - objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-sse3 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/d2/edb368dad9d33efbc010c6f341fa738cab2c9f.debug - chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/d2/edb368dad9d33efbc010c6f341fa738cab2c9f.debug - strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-sse3 - objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/d2/edb368dad9d33efbc010c6f341fa738cab2c9f.debug debian/scrappie/usr/bin/scrappie-sse3 - install -m0755 -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/f9 - objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-ssse3 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/f9/31b9b68c6811f87f78d9f5fa08d29608693f80.debug - chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/f9/31b9b68c6811f87f78d9f5fa08d29608693f80.debug - strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-ssse3 - objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/f9/31b9b68c6811f87f78d9f5fa08d29608693f80.debug debian/scrappie/usr/bin/scrappie-ssse3 install -m0755 -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/da objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-plain debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/da/016b69694ec28b1b705c130f3df8c2de7afed1.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/da/016b69694ec28b1b705c130f3df8c2de7afed1.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-plain objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/da/016b69694ec28b1b705c130f3df8c2de7afed1.debug debian/scrappie/usr/bin/scrappie-plain + install -m0755 -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/f9 + objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-ssse3 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/f9/31b9b68c6811f87f78d9f5fa08d29608693f80.debug + chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/f9/31b9b68c6811f87f78d9f5fa08d29608693f80.debug + strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-ssse3 + objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/f9/31b9b68c6811f87f78d9f5fa08d29608693f80.debug debian/scrappie/usr/bin/scrappie-ssse3 + install -m0755 -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/d2 + objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-sse3 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/d2/edb368dad9d33efbc010c6f341fa738cab2c9f.debug + chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/d2/edb368dad9d33efbc010c6f341fa738cab2c9f.debug + strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-sse3 + objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/d2/edb368dad9d33efbc010c6f341fa738cab2c9f.debug debian/scrappie/usr/bin/scrappie-sse3 strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/scrappie/usr/lib/libscrappie.a install -m0755 -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/scrappie/usr/lib/debug/.dwz/i386-linux-gnu debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.dwz @@ -404036,7 +404072,7 @@ rm -f debian/scrappie/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=cmake install -m0755 -d debian/scrappie/DEBIAN - dpkg-shlibdeps -Tdebian/scrappie.substvars debian/scrappie/usr/bin/scrappie-sse2 debian/scrappie/usr/bin/scrappie-sse3 debian/scrappie/usr/bin/scrappie-ssse3 debian/scrappie/usr/bin/scrappie-plain + dpkg-shlibdeps -Tdebian/scrappie.substvars debian/scrappie/usr/bin/scrappie-sse2 debian/scrappie/usr/bin/scrappie-plain debian/scrappie/usr/bin/scrappie-ssse3 debian/scrappie/usr/bin/scrappie-sse3 dh_installdeb -O--buildsystem=cmake install -m0755 -d debian/scrappie/DEBIAN rm -f debian/scrappie.debhelper.log @@ -404071,12 +404107,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/30623/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/30623/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/5081 and its subdirectories -I: Current time: Thu Jun 26 18:23:01 -12 2025 -I: pbuilder-time-stamp: 1751005381 +I: removing directory /srv/workspace/pbuilder/30623 and its subdirectories +I: Current time: Sat May 25 14:08:08 +14 2024 +I: pbuilder-time-stamp: 1716595688