Diff of the two buildlogs: -- --- b1/build.log 2024-05-29 14:35:56.922685991 +0000 +++ b2/build.log 2024-05-29 14:39:55.084551738 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jul 1 08:56:13 -12 2025 -I: pbuilder-time-stamp: 1751403373 +I: Current time: Thu May 30 04:36:02 +14 2024 +I: pbuilder-time-stamp: 1716993362 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -27,52 +27,84 @@ dpkg-source: info: applying use-upstream-go-logger.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/772694/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3724381/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 29 14:36 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3724381/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3724381/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='d46bddda78d04c4a9af5ceac4bdc9b22' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='772694' - PS1='# ' - PS2='> ' + INVOCATION_ID=894c7d7358154f148aeded3af6ce5590 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3724381 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xWvxqhMS/pbuilderrc_LR5d --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xWvxqhMS/b1 --logfile b1/build.log seqkit_2.3.1+ds-2.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xWvxqhMS/pbuilderrc_ZYY3 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xWvxqhMS/b2 --logfile b2/build.log seqkit_2.3.1+ds-2.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 29 17:46 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/772694/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 26 11:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3724381/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -298,7 +330,7 @@ Get: 130 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.19+ds-1.1+b1 [448 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 libncurses6 amd64 6.5-2 [104 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 samtools amd64 1.19.2-1+b1 [645 kB] -Fetched 121 MB in 8s (14.3 MB/s) +Fetched 121 MB in 3s (42.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19700 files and directories currently installed.) @@ -841,7 +873,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/seqkit-2.3.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqkit_2.3.1+ds-2_source.changes +I: user script /srv/workspace/pbuilder/3724381/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3724381/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/seqkit-2.3.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqkit_2.3.1+ds-2_source.changes dpkg-buildpackage: info: source package seqkit dpkg-buildpackage: info: source version 2.3.1+ds-2 dpkg-buildpackage: info: source distribution unstable @@ -859,48 +895,48 @@ dh_autoreconf -O--buildsystem=golang -O--builddirectory=build dh_auto_configure -O--buildsystem=golang -O--builddirectory=build dh_auto_build -O--buildsystem=golang -O--builddirectory=build - cd build && go install -trimpath -v -p 42 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd + cd build && go install -trimpath -v -p 20 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd +internal/goos +internal/race internal/unsafeheader -internal/coverage/rtcov -golang.org/x/image/math/f64 -unicode/utf16 -container/list -vendor/golang.org/x/crypto/internal/alias -crypto/internal/alias -encoding -internal/godebugs -vendor/golang.org/x/crypto/cryptobyte/asn1 internal/goarch -unicode/utf8 -github.com/klauspost/compress/internal/cpuinfo -internal/itoa -sync/atomic -image/color +cmp +internal/godebugs log/internal -runtime/internal/atomic -internal/platform -internal/goos -internal/nettrace -internal/cpu -internal/goversion unicode +internal/coverage/rtcov +internal/itoa +runtime/internal/atomic internal/goexperiment -internal/race -github.com/ulikunitz/xz/internal/hash -math/bits -crypto/internal/boring/sig +internal/cpu +sync/atomic +internal/platform +golang.org/x/image/math/f64 +unicode/utf8 runtime/internal/syscall -cmp -crypto/subtle +crypto/internal/alias +math/bits +internal/abi +internal/nettrace +image/color internal/chacha8rand +internal/goversion runtime/internal/math -internal/abi runtime/internal/sys +crypto/subtle +crypto/internal/boring/sig +encoding +unicode/utf16 +github.com/klauspost/compress/internal/cpuinfo +container/list +vendor/golang.org/x/crypto/cryptobyte/asn1 +vendor/golang.org/x/crypto/internal/alias +github.com/ulikunitz/xz/internal/hash slices -github.com/rivo/uniseg -image/color/palette internal/bytealg math +github.com/rivo/uniseg +image/color/palette runtime github.com/klauspost/compress github.com/shenwei356/util/math @@ -910,215 +946,215 @@ internal/singleflight internal/bisect runtime/cgo +internal/godebug errors +sort +internal/intern +math/rand internal/oserror +io internal/safefilepath -internal/godebug +strconv +path vendor/golang.org/x/net/dns/dnsmessage gonum.org/v1/plot/palette -path -io -strconv -sort crypto/internal/nistec/fiat -reflect -internal/intern +syscall +github.com/shenwei356/util/randutil hash bytes -text/tabwriter -container/heap -crypto/rc4 strings +text/tabwriter internal/saferio -crypto/internal/randutil github.com/shenwei356/bio/util -math/rand -syscall -crypto +container/heap +crypto/internal/randutil +hash/crc32 hash/adler32 hash/crc64 -hash/crc32 +reflect net/netip -github.com/shenwei356/util/randutil +crypto +crypto/rc4 vendor/golang.org/x/text/transform github.com/twotwotwo/sorts -net/http/internal/ascii -go/build/constraint github.com/biogo/biogo/feat -regexp/syntax -html bufio +go/build/constraint +net/http/internal/ascii +regexp/syntax github.com/twotwotwo/sorts/sortutil +html image -image/internal/imageutil -image/draw -image/jpeg -regexp internal/syscall/unix internal/syscall/execenv time +regexp +image/internal/imageutil +image/draw +image/jpeg golang.org/x/image/draw github.com/shenwei356/natsort -internal/fmtsort -encoding/binary context io/fs internal/poll +embed +os +internal/fmtsort +encoding/binary crypto/md5 encoding/base64 -golang.org/x/image/ccitt crypto/cipher +golang.org/x/image/ccitt github.com/cespare/xxhash github.com/klauspost/compress/internal/snapref -crypto/internal/edwards25519/field vendor/golang.org/x/crypto/internal/poly1305 index/suffixarray +crypto/internal/edwards25519/field golang.org/x/sys/unix -embed +crypto/internal/nistec encoding/pem crypto/internal/boring crypto/des vendor/golang.org/x/crypto/chacha20 -crypto/internal/nistec +fmt +path/filepath +internal/lazyregexp +io/ioutil +vendor/golang.org/x/sys/cpu +github.com/mattn/go-runewidth +os/signal +net crypto/sha1 -crypto/sha512 crypto/aes +crypto/sha512 crypto/hmac crypto/sha256 +crypto/internal/edwards25519 github.com/shenwei356/bwt vendor/golang.org/x/crypto/hkdf -os -crypto/internal/edwards25519 -internal/lazyregexp -io/ioutil -github.com/mattn/go-runewidth -path/filepath -vendor/golang.org/x/sys/cpu -os/signal -fmt -crypto/ecdh os/exec +vendor/golang.org/x/crypto/chacha20poly1305 +crypto/ecdh internal/goroot github.com/mitchellh/go-homedir -vendor/golang.org/x/crypto/chacha20poly1305 log +github.com/biogo/biogo/alphabet encoding/hex -golang.org/x/image/tiff/lzw -net/url golang.org/x/image/math/fixed -github.com/iafan/cwalk -github.com/shenwei356/util/pathutil -mime/quotedprintable -github.com/shenwei356/bwt/fmi -github.com/biogo/biogo/alphabet -go/doc/comment -encoding/csv -flag +net/url +golang.org/x/image/tiff/lzw +compress/flate +internal/buildcfg go/token -text/template/parse -vendor/golang.org/x/net/http2/hpack +go/doc/comment +compress/lzw +encoding/xml encoding/gob -mime -github.com/pkg/errors -github.com/shenwei356/util/byteutil -github.com/logrusorgru/aurora -github.com/tatsushid/go-prettytable encoding/json -compress/lzw -net/http/internal -vendor/golang.org/x/text/unicode/norm -runtime/debug github.com/klauspost/compress/fse -compress/flate -internal/buildcfg -github.com/ulikunitz/xz/internal/xlog +github.com/iafan/cwalk +runtime/debug math/big -encoding/xml -gopkg.in/yaml.v2 +github.com/logrusorgru/aurora +github.com/pkg/errors +vendor/golang.org/x/text/unicode/norm +vendor/golang.org/x/text/unicode/bidi image/gif +vendor/golang.org/x/net/http2/hpack github.com/golang/freetype/raster golang.org/x/image/font -github.com/shenwei356/bio/seq -github.com/shenwei356/util/stringutil -vendor/golang.org/x/text/unicode/bidi -golang.org/x/image/font/basicfont -github.com/ulikunitz/xz/lzma go/scanner +mime +mime/quotedprintable github.com/biogo/biogo/seq +golang.org/x/image/font/basicfont +net/http/internal github.com/klauspost/compress/huff0 +github.com/shenwei356/util/byteutil +os/user github.com/biogo/biogo/io/seqio github.com/biogo/biogo/seq/linear github.com/biogo/biogo/align +go/ast +github.com/shenwei356/bwt/fmi +github.com/biogo/biogo/io/seqio/fasta github.com/golang/freetype/truetype compress/gzip compress/zlib github.com/klauspost/compress/flate -github.com/biogo/biogo/io/seqio/fasta -go/ast +github.com/shenwei356/seqkit/benchmark +github.com/shenwei356/bio/seq +github.com/shenwei356/util/pathutil image/png golang.org/x/image/tiff -github.com/biogo/hts/bgzf -github.com/shenwei356/seqkit/benchmark -github.com/mattn/go-isatty -golang.org/x/term -github.com/fsnotify/fsnotify -github.com/edsrzf/mmap-go -text/template vendor/golang.org/x/text/secure/bidirule -gonum.org/v1/plot/vg/fonts -github.com/mattn/go-colorable -github.com/shenwei356/bio/seqio/fai +github.com/biogo/hts/bgzf github.com/ajstarks/svgo -os/user -net -github.com/ulikunitz/xz +github.com/shenwei356/util/stringutil +gopkg.in/yaml.v2 +encoding/csv +flag +text/template/parse +vendor/golang.org/x/net/idna +gonum.org/v1/plot/vg/fonts +github.com/tatsushid/go-prettytable +github.com/ulikunitz/xz/internal/xlog github.com/biogo/hts/bgzf/index -golang.org/x/crypto/ssh/terminal +go/internal/typeparams +github.com/ulikunitz/xz/lzma +go/doc github.com/biogo/hts/internal -vendor/golang.org/x/net/idna +go/parser github.com/fogleman/gg github.com/biogo/hts/sam -go/internal/typeparams -go/doc github.com/jung-kurt/gofpdf -go/parser github.com/cznic/sortutil github.com/dustin/go-humanize +crypto/internal/boring/bbig +crypto/internal/bigmod crypto/rand crypto/elliptic -crypto/internal/boring/bbig -crypto/dsa encoding/asn1 -crypto/internal/bigmod -github.com/smallfish/simpleyaml -crypto/ed25519 +crypto/dsa +github.com/mattn/go-isatty +golang.org/x/term +github.com/fsnotify/fsnotify github.com/klauspost/compress/zstd -crypto/rsa +github.com/mattn/go-colorable github.com/klauspost/pgzip -github.com/biogo/hts/bam -crypto/x509/pkix +crypto/ed25519 +github.com/edsrzf/mmap-go +text/template +github.com/ulikunitz/xz +golang.org/x/crypto/ssh/terminal +crypto/rsa +github.com/shenwei356/bio/seqio/fai vendor/golang.org/x/crypto/cryptobyte +crypto/x509/pkix go/build +github.com/biogo/hts/bam crypto/ecdsa +github.com/smallfish/simpleyaml gonum.org/v1/plot/vg gonum.org/v1/plot/vg/vgeps -gonum.org/v1/plot/tools/bezier gonum.org/v1/plot/vg/vgimg gonum.org/v1/plot/vg/vgsvg +gonum.org/v1/plot/tools/bezier gonum.org/v1/plot/vg/vgpdf gonum.org/v1/plot/vg/draw gonum.org/v1/plot gonum.org/v1/plot/plotter -gonum.org/v1/plot/plotutil -github.com/bsipos/thist log/syslog vendor/golang.org/x/net/http/httpproxy -net/textproto crypto/x509 +net/textproto github.com/spf13/pflag github.com/op/go-logging vendor/golang.org/x/net/http/httpguts mime/multipart +gonum.org/v1/plot/plotutil +github.com/bsipos/thist crypto/tls github.com/spf13/cobra net/http/httptrace @@ -1130,7 +1166,7 @@ github.com/shenwei356/seqkit/seqkit/cmd github.com/shenwei356/seqkit/seqkit dh_auto_test -O--buildsystem=golang -O--builddirectory=build - cd build && go test -vet=off -v -p 42 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd + cd build && go test -vet=off -v -p 20 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd ? github.com/shenwei356/seqkit/benchmark [no test files] ? github.com/shenwei356/seqkit/seqkit [no test files] ? github.com/shenwei356/seqkit/seqkit/cmd [no test files] @@ -1176,9 +1212,9 @@ dpkg-gencontrol: warning: package seqkit: substitution variable ${misc:Static-Built-Using} unused, but is defined dh_md5sums -O--buildsystem=golang -O--builddirectory=build dh_builddeb -O--buildsystem=golang -O--builddirectory=build -dpkg-deb: building package 'seqkit' in '../seqkit_2.3.1+ds-2_amd64.deb'. -dpkg-deb: building package 'seqkit-dbgsym' in '../seqkit-dbgsym_2.3.1+ds-2_amd64.deb'. dpkg-deb: building package 'seqkit-examples' in '../seqkit-examples_2.3.1+ds-2_all.deb'. +dpkg-deb: building package 'seqkit-dbgsym' in '../seqkit-dbgsym_2.3.1+ds-2_amd64.deb'. +dpkg-deb: building package 'seqkit' in '../seqkit_2.3.1+ds-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../seqkit_2.3.1+ds-2_amd64.buildinfo dpkg-genchanges --build=binary -O../seqkit_2.3.1+ds-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1186,12 +1222,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3724381/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3724381/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/772694 and its subdirectories -I: Current time: Tue Jul 1 08:58:56 -12 2025 -I: pbuilder-time-stamp: 1751403536 +I: removing directory /srv/workspace/pbuilder/3724381 and its subdirectories +I: Current time: Thu May 30 04:39:53 +14 2024 +I: pbuilder-time-stamp: 1716993593