Diff of the two buildlogs: -- --- b1/build.log 2024-04-05 08:17:24.236890004 +0000 +++ b2/build.log 2024-04-05 08:21:44.101772398 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Apr 4 20:10:38 -12 2024 -I: pbuilder-time-stamp: 1712304638 +I: Current time: Fri Apr 5 22:17:35 +14 2024 +I: pbuilder-time-stamp: 1712305055 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: unpacking kalign_3.4.0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/8157/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/8001/tmp/hooks/D01_modify_environment starting +debug: Running on virt64c. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 5 08:17 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/8001/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/8001/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='bdfec6488ab34eba970eee28cdf45fb1' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='8157' - PS1='# ' - PS2='> ' + INVOCATION_ID=5f1ac3527cf54390bf316d5213c0c9b3 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=8001 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RpFZFQ3f/pbuilderrc_fm0s --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RpFZFQ3f/b1 --logfile b1/build.log kalign_3.4.0-1.dsc' - SUDO_GID='110' - SUDO_UID='103' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RpFZFQ3f/pbuilderrc_BDD9 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RpFZFQ3f/b2 --logfile b2/build.log kalign_3.4.0-1.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32z 6.1.0-18-armmp-lpae #1 SMP Debian 6.1.76-1 (2024-02-01) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-18-arm64 #1 SMP Debian 6.1.76-1 (2024-02-01) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 4 11:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/8157/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 4 11:26 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/8001/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -159,7 +191,7 @@ Get: 47 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf libsimde-dev all 0.8.0-1 [458 kB] -Fetched 29.0 MB in 1s (50.9 MB/s) +Fetched 29.0 MB in 1s (49.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19637 files and directories currently installed.) @@ -370,7 +402,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/kalign-3.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kalign_3.4.0-1_source.changes +I: user script /srv/workspace/pbuilder/8001/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/8001/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/kalign-3.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../kalign_3.4.0-1_source.changes dpkg-buildpackage: info: source package kalign dpkg-buildpackage: info: source version 1:3.4.0-1 dpkg-buildpackage: info: source distribution unstable @@ -421,8 +457,8 @@ -- Compiler c flags : -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -- OpenMP version : 4.5 -- OpenMP flags : -fopenmp --- Configuring done (8.7s) --- Generating done (0.3s) +-- Configuring done (3.7s) +-- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: @@ -435,7 +471,7 @@ -- Build files have been written to: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0' dh_auto_build - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks @@ -443,142 +479,123 @@ make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build +make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build -make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build +make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' [ 1%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c [ 2%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c [ 4%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -[ 5%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o +[ 5%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c +[ 6%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -[ 6%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c [ 8%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -[ 9%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o +[ 10%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o +[ 10%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c +[ 12%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c -[ 10%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o +[ 13%] Linking C executable alphabet_utest +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 +[ 14%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o +[ 16%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -[ 12%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c -[ 13%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest +[ 17%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -[ 14%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o +make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +[ 17%] Built target alphabet_utest +make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +[ 18%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c +[ 20%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c -[ 16%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o +[ 21%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c -[ 17%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o +[ 22%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c -[ 18%] Linking C static library libtldevel.a +[ 24%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c +[ 25%] Linking C static library libtldevel.a cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1 /usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -[ 20%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c /usr/bin/ranlib libtldevel.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 20%] Built target tldevel -make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend +[ 25%] Built target tldevel +make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color=" -[ 21%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color=" +[ 27%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build +make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 22%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -[ 24%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o +[ 28%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c +[ 29%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c -[ 25%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o +[ 31%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c -[ 27%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o +[ 32%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c -[ 28%] Linking C executable bpm_utest +[ 33%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c +[ 35%] Linking C executable bpm_utest cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 28%] Built target bpm_utest -make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 29%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -[ 31%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c -[ 32%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c -[ 33%] Linking C executable alphabet_utest -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest -[ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c -make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 35%] Built target alphabet_utest -make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 36%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -[ 37%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c -[ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c -[ 40%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -[ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c -[ 43%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o +[ 35%] Built target bpm_utest +[ 36%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c -[ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c -/build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': -/build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 94 | fscanf( f_ptr, "%d", &n_tasks); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 45%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o +[ 37%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c -[ 47%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c: In function 'main': /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c:58:15: warning: unused variable 'd2' [-Wunused-variable] 58 | float d2; | ^~ -[ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c -[ 50%] Linking C executable edist_utest +[ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c +[ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c +[ 41%] Linking C executable edist_utest cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm +[ 43%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 50%] Built target edist_utest -[ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c -[ 52%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c +[ 43%] Built target edist_utest +[ 44%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] @@ -587,15 +604,34 @@ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c -[ 55%] Linking C executable task_utest +[ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c +[ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c +[ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c +[ 50%] Linking C executable task_utest cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1 -[ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c /usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm +[ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c +/build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': +/build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 94 | fscanf( f_ptr, "%d", &n_tasks); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 56%] Built target task_utest +[ 51%] Built target task_utest +[ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c +[ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c +[ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c +[ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c [ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c [ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o @@ -621,129 +657,136 @@ make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' [ 71%] Built target kalign_OBJ make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend +make[3]: Entering 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'/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +[ 74%] Built target kalign_static +make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend +make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color=" [ 74%] Built target kalign make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color=" -[ 74%] Built target kalign_static +make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend +make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests 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-I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c +[ 79%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c -[ 78%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 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'/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 81%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c [ 81%] Built target kalign_io_test -make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend +make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests 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-fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c +[ 83%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c -[ 83%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c -[ 85%] Linking C executable kalignfmt +[ 85%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c +[ 86%] Linking C executable kalignfmt cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1 +[ 87%] Linking C executable largebench +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/arm-linux-gnueabihf/13/libgomp.so /usr/lib/arm-linux-gnueabihf/libpthread.a -[ 86%] Linking C executable kalign_lib_test -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/arm-linux-gnueabihf/13/libgomp.so /usr/lib/arm-linux-gnueabihf/libpthread.a +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/arm-linux-gnueabihf/13/libgomp.so /usr/lib/arm-linux-gnueabihf/libpthread.a +[ 89%] Linking C executable kalign +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1 +[ 90%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/arm-linux-gnueabihf/13/libgomp.so /usr/lib/arm-linux-gnueabihf/libpthread.a +make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +[ 90%] Built target kalignfmt +make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend +make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color=" +[ 90%] Built target largebench make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 86%] Built target kalignfmt make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend +make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +[ 90%] Built target kalign-bin +[ 91%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 87%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c -[ 87%] Built target kalign_lib_test make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf 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/build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 89%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o +[ 94%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp -[ 90%] Linking C executable dssim -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1 -[ 91%] Linking C executable kalign_cmp_test -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/arm-linux-gnueabihf/13/libgomp.so /usr/lib/arm-linux-gnueabihf/libpthread.a +[ 95%] Linking C executable kalign_cmp_test cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/arm-linux-gnueabihf/13/libgomp.so /usr/lib/arm-linux-gnueabihf/libpthread.a +[ 97%] Linking C executable kalign_lib_test +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/arm-linux-gnueabihf/13/libgomp.so /usr/lib/arm-linux-gnueabihf/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +[ 97%] Built target kalign_cmp_test make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 91%] Built target kalign_cmp_test -make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend -[ 91%] Built target dssim -make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +[ 97%] Built target kalign_lib_test +[ 98%] Linking C executable dssim +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/arm-linux-gnueabihf/13/libgomp.so /usr/lib/arm-linux-gnueabihf/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 93%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c -[ 94%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c -[ 95%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c -[ 97%] Linking C executable largebench -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/arm-linux-gnueabihf/13/libgomp.so /usr/lib/arm-linux-gnueabihf/libpthread.a +[ 98%] Built target dssim /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()': /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 10 | "GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE", @@ -757,13 +800,6 @@ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 13 | "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 98%] Linking C executable kalign -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/arm-linux-gnueabihf/13/libgomp.so /usr/lib/arm-linux-gnueabihf/libpthread.a -make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 98%] Built target largebench -make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 98%] Built target kalign-bin [100%] Linking CXX executable kaligncpp cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -o kaligncpp ../lib/libkalign.a -lm /usr/lib/gcc/arm-linux-gnueabihf/13/libgomp.so /usr/lib/arm-linux-gnueabihf/libpthread.a @@ -773,10 +809,10 @@ /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' dh_auto_test - cd obj-arm-linux-gnueabihf && make -j3 test ARGS\+=--verbose ARGS\+=-j3 + cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=--verbose ARGS\+=-j4 make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j3 +/usr/bin/ctest --force-new-ctest-process --verbose -j4 UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/DartConfiguration.tcl @@ -806,8 +842,14 @@ 3: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/edist_utest 3: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib 3: Test timeout computed to be: 1500 +test 4 + Start 4: task_utest + +4: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/task_utest +4: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib +4: Test timeout computed to be: 1500 1: LEN: 256 -1: [2024-04-05 08:12:29] : LOG : Testing correctness of serial bpm. +1: [2024-04-05 08:18:46] : LOG : Testing correctness of serial bpm. 2: LEN: 21 2: @ -1 2: A 0 @@ -940,84 +982,84 @@ 2: ] -1 2: ^ -1 2: _ -1 - 1/12 Test #2: alphabet_utest ................... Passed 0.06 sec -test 4 - Start 4: task_utest - -4: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/task_utest -4: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -4: Test timeout computed to be: 1500 -3: [2024-04-05 08:12:29] : LOG : Check for correctness. -3: [2024-04-05 08:12:29] : LOG : Timing serial -3: [2024-04-05 08:12:29] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00 -4: 956 61 517 651 980 -4: 309 512 51 252 9 -4: 508 214 381 749 665 -4: 429 42 50 524 54 -4: 293 561 816 243 601 -4: 812 893 587 455 443 -4: 319 947 786 778 688 -4: 446 113 55 169 461 -4: 465 5 468 56 124 -4: 583 868 658 245 282 -4: 21 339 277 879 643 -4: 93 553 783 737 344 -4: 669 570 271 248 712 -4: 437 815 312 976 956 -4: 313 578 110 877 972 -4: 52 221 697 196 591 -4: 237 477 93 908 956 -4: 553 923 779 971 909 -4: 356 537 43 338 619 -4: 187 473 409 283 890 -4: 626 170 425 158 931 -4: 555 285 584 524 28 -4: 538 416 92 619 486 -4: 772 447 624 78 603 -4: 247 417 407 635 631 -4: 671 892 278 286 836 -4: 344 611 230 962 451 -4: 90 593 943 256 679 -4: 282 152 734 591 844 -4: 986 455 734 27 425 -4: 826 342 563 177 455 -4: 643 124 293 79 469 -4: 123 471 883 285 855 -4: 534 133 120 382 237 -4: 289 167 933 722 563 -4: 843 934 370 216 549 -4: 546 475 126 866 241 -4: 774 349 300 199 208 -4: 419 200 466 205 153 -4: 286 146 261 323 187 -4: 1 730 414 208 306 -4: 648 268 552 756 387 -4: 139 118 553 827 42 -4: 299 722 586 195 896 -4: 115 94 203 997 43 -4: 952 474 578 529 91 -4: 43 94 886 94 623 -4: 419 246 214 941 745 -4: 506 812 970 306 171 -4: 236 928 71 800 669 -4: 282 40 631 481 217 -4: 821 540 758 343 277 -4: 971 971 542 181 727 -4: 865 739 320 403 838 - 2/12 Test #3: edist_utest ...................... Passed 0.07 sec +3: [2024-04-05 08:18:46] : LOG : Check for correctness. +3: [2024-04-05 08:18:46] : LOG : Timing serial + 1/12 Test #2: alphabet_utest ................... Passed 0.02 sec test 5 Start 5: C++Lib 5: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests/kaligncpp 5: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 5: Test timeout computed to be: 1500 - 3/12 Test #4: task_utest ....................... Passed 0.05 sec +4: 53 940 479 670 420 +4: 529 748 719 729 955 +4: 103 183 28 994 915 +4: 36 662 916 77 233 +4: 299 827 248 257 936 +4: 23 910 130 770 311 +4: 99 761 76 760 850 +4: 725 415 214 810 456 +4: 944 228 802 727 125 +4: 881 202 754 964 833 +4: 774 47 788 462 149 +4: 27 372 133 163 845 +4: 979 847 203 225 98 +4: 210 796 387 595 635 +4: 681 989 934 310 863 +4: 269 522 579 5 980 +4: 987 249 106 714 3 +4: 139 766 567 801 766 +4: 683 363 643 591 144 +4: 137 707 763 444 709 +4: 178 310 388 492 94 +4: 466 809 271 550 369 +4: 170 883 695 697 842 +4: 532 149 788 18 18 +4: 821 999 256 370 148 +4: 455 951 590 357 27 +4: 687 696 464 810 539 +4: 389 487 103 421 235 +4: 492 986 743 363 429 +4: 168 655 49 876 957 +4: 474 119 963 127 814 +4: 118 525 839 850 450 +4: 541 593 6 24 508 +4: 113 105 992 803 671 +4: 983 819 213 508 759 +4: 150 545 281 128 962 +4: 146 307 778 916 57 +4: 118 825 6 360 436 +4: 353 182 169 621 462 +4: 340 499 386 477 716 +4: 797 686 566 786 549 +4: 318 753 493 658 381 +4: 406 658 512 826 50 +4: 58 385 749 429 804 +4: 181 220 740 145 935 +4: 537 709 260 171 230 +4: 457 530 118 537 330 +4: 403 801 89 637 401 +4: 451 112 0 708 311 +4: 221 352 153 109 591 +4: 513 604 539 89 725 +4: 233 234 72 795 255 +4: 973 176 168 549 163 +4: 868 621 553 496 583 + 2/12 Test #4: task_utest ....................... Passed 0.02 sec test 6 Start 6: kalign_itest_BB11001.tfa 6: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa" 6: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 6: Test timeout computed to be: 1500 +3: [2024-04-05 08:18:46] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00 + 3/12 Test #3: edist_utest ...................... Passed 0.03 sec +test 7 + Start 7: kalign_itest_BB11001_EOF.msf + +7: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf" +7: Working Directory: /build/reproducible-path/kalign-3.4.0/tests +7: Test timeout computed to be: 1500 6: 6: Kalign (3.4.0) 6: @@ -1034,46 +1076,26 @@ 6: Bioinformatics (2019) 6: https://doi.org/10.1093/bioinformatics/btz795 6: -6: [2024-04-05 08:12:29] : LOG : Detected protein sequences. -6: [2024-04-05 08:12:29] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. -6: [2024-04-05 08:12:29] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 -6: [2024-04-05 08:12:29] : LOG : Calculating pairwise distances +6: [2024-04-05 08:18:46] : LOG : Detected protein sequences. +6: [2024-04-05 08:18:46] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. +6: [2024-04-05 08:18:46] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +6: [2024-04-05 08:18:46] : LOG : Calculating pairwise distances 5: Aligned: 5: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------- 5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK 5: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- 5: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK -6: [2024-04-05 08:12:29] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -6: [2024-04-05 08:12:29] : LOG : Building guide tree. - 4/12 Test #5: C++Lib ........................... Passed 0.08 sec -test 7 - Start 7: kalign_itest_BB11001_EOF.msf - -7: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf" -7: Working Directory: /build/reproducible-path/kalign-3.4.0/tests -7: Test timeout computed to be: 1500 -6: [2024-04-05 08:12:29] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -6: [2024-04-05 08:12:29] : LOG : Aligning -6: [2024-04-05 08:12:29] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 -6: >1aab_ -6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG -6: KFEDMAKADKARYEREMKTYIPPKGE---------- -6: >1j46_A -6: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW -6: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK -6: >1k99_A -6: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM -6: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- -6: >2lef_A -6: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA -6: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK - 5/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.08 sec + 4/12 Test #5: C++Lib ........................... Passed 0.01 sec test 8 Start 8: kalign_itest_BB12006.msf 8: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf" 8: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 8: Test timeout computed to be: 1500 +6: [2024-04-05 08:18:46] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +6: [2024-04-05 08:18:46] : LOG : Building guide tree. +6: [2024-04-05 08:18:46] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +6: [2024-04-05 08:18:46] : LOG : Aligning 7: 7: Kalign (3.4.0) 7: @@ -1090,10 +1112,10 @@ 7: Bioinformatics (2019) 7: https://doi.org/10.1093/bioinformatics/btz795 7: -7: [2024-04-05 08:12:30] : LOG : Detected protein sequences. -7: [2024-04-05 08:12:30] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. -7: [2024-04-05 08:12:30] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:01.00 -7: [2024-04-05 08:12:30] : LOG : Calculating pairwise distances +7: [2024-04-05 08:18:46] : LOG : Detected protein sequences. +7: [2024-04-05 08:18:46] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. +7: [2024-04-05 08:18:46] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +7: [2024-04-05 08:18:46] : LOG : Calculating pairwise distances 8: 8: Kalign (3.4.0) 8: @@ -1110,17 +1132,35 @@ 8: Bioinformatics (2019) 8: https://doi.org/10.1093/bioinformatics/btz795 8: -8: [2024-04-05 08:12:30] : LOG : Detected protein sequences. -8: [2024-04-05 08:12:30] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. -8: [2024-04-05 08:12:30] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 -8: [2024-04-05 08:12:30] : LOG : Calculating pairwise distances -7: [2024-04-05 08:12:30] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -7: [2024-04-05 08:12:30] : LOG : Building guide tree. -7: [2024-04-05 08:12:30] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -7: [2024-04-05 08:12:30] : LOG : Aligning -8: [2024-04-05 08:12:30] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -8: [2024-04-05 08:12:30] : LOG : Building guide tree. -7: [2024-04-05 08:12:30] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +8: [2024-04-05 08:18:46] : LOG : Detected protein sequences. +8: [2024-04-05 08:18:46] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. +8: [2024-04-05 08:18:46] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +8: [2024-04-05 08:18:46] : LOG : Calculating pairwise distances +6: [2024-04-05 08:18:46] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 +6: >1aab_ +6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG +6: KFEDMAKADKARYEREMKTYIPPKGE---------- +6: >1j46_A +6: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW +6: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK +6: >1k99_A +6: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM +6: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- +6: >2lef_A +6: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA +6: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK +7: [2024-04-05 08:18:46] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +7: [2024-04-05 08:18:46] : LOG : Building guide tree. + 5/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.02 sec +test 9 + Start 9: kalign_itest_BB12006.tfa + +9: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" +9: Working Directory: /build/reproducible-path/kalign-3.4.0/tests +9: Test timeout computed to be: 1500 +7: [2024-04-05 08:18:46] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +7: [2024-04-05 08:18:46] : LOG : Aligning +7: [2024-04-05 08:18:46] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 7: >1aab_ 7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 7: KFEDMAKADKARYEREMKTYIPPKGE---------- @@ -1133,41 +1173,11 @@ 7: >2lef_A 7: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 7: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK -8: [2024-04-05 08:12:30] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -8: [2024-04-05 08:12:30] : LOG : Aligning - 6/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.09 sec -test 9 - Start 9: kalign_itest_BB12006.tfa - -9: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" -9: Working Directory: /build/reproducible-path/kalign-3.4.0/tests -9: Test timeout computed to be: 1500 -8: [2024-04-05 08:12:30] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 -8: >1al2_ad -8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS -8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF -8: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ -8: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ -8: KA--- -8: >1bbt_ac -8: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- -8: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF -8: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY -8: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- -8: ----- -8: >1bev_ac -8: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N -8: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC -8: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG -8: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ -8: TAILQ -8: >1mec_ac -8: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- -8: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF -8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM -8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP -8: Q---- - 7/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.09 sec +8: [2024-04-05 08:18:46] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +8: [2024-04-05 08:18:46] : LOG : Building guide tree. +8: [2024-04-05 08:18:46] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +8: [2024-04-05 08:18:46] : LOG : Aligning + 6/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.03 sec test 10 Start 10: kalign_itest_BB30014.msf @@ -1190,10 +1200,10 @@ 9: Bioinformatics (2019) 9: https://doi.org/10.1093/bioinformatics/btz795 9: -9: [2024-04-05 08:12:30] : LOG : Detected protein sequences. -9: [2024-04-05 08:12:30] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. -9: [2024-04-05 08:12:30] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 -9: [2024-04-05 08:12:30] : LOG : Calculating pairwise distances +9: [2024-04-05 08:18:46] : LOG : Detected protein sequences. +9: [2024-04-05 08:18:46] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. +9: [2024-04-05 08:18:46] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +9: [2024-04-05 08:18:46] : LOG : Calculating pairwise distances 10: 10: Kalign (3.4.0) 10: @@ -1210,17 +1220,51 @@ 10: Bioinformatics (2019) 10: https://doi.org/10.1093/bioinformatics/btz795 10: -10: [2024-04-05 08:12:30] : LOG : Detected protein sequences. -10: [2024-04-05 08:12:30] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. -10: [2024-04-05 08:12:30] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 -10: [2024-04-05 08:12:30] : LOG : Calculating pairwise distances -9: [2024-04-05 08:12:30] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -9: [2024-04-05 08:12:30] : LOG : Building guide tree. -9: [2024-04-05 08:12:30] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -9: [2024-04-05 08:12:30] : LOG : Aligning -10: [2024-04-05 08:12:30] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -10: [2024-04-05 08:12:30] : LOG : Building guide tree. -9: [2024-04-05 08:12:30] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +10: [2024-04-05 08:18:46] : LOG : Detected protein sequences. +10: [2024-04-05 08:18:46] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. +10: [2024-04-05 08:18:46] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +10: [2024-04-05 08:18:46] : LOG : Calculating pairwise distances +8: [2024-04-05 08:18:46] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00 +8: >1al2_ad +8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS +8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF +8: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ +8: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ +8: KA--- +8: >1bbt_ac +8: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R-- +8: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF +8: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY +8: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE-- +8: ----- +8: >1bev_ac +8: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N +8: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC +8: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG +8: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ +8: TAILQ +8: >1mec_ac +8: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK-- +8: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF +8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM +8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP +8: Q---- +9: [2024-04-05 08:18:46] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 +9: [2024-04-05 08:18:46] : LOG : Building guide tree. + 7/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.03 sec +test 11 + Start 11: kalign_itest_BB30014.tfa + +11: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa" +11: Working Directory: /build/reproducible-path/kalign-3.4.0/tests +11: Test timeout computed to be: 1500 +9: [2024-04-05 08:18:46] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +9: [2024-04-05 08:18:46] : LOG : Aligning +10: [2024-04-05 08:18:46] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +10: [2024-04-05 08:18:46] : LOG : Building guide tree. +10: [2024-04-05 08:18:46] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +10: [2024-04-05 08:18:46] : LOG : Aligning +9: [2024-04-05 08:18:46] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00 9: >1al2_ad 9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF @@ -1245,16 +1289,34 @@ 9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 9: Q---- -10: [2024-04-05 08:12:30] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -10: [2024-04-05 08:12:30] : LOG : Aligning - 8/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.09 sec -test 11 - Start 11: kalign_itest_BB30014.tfa +11: +11: Kalign (3.4.0) +11: +11: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann +11: +11: This program comes with ABSOLUTELY NO WARRANTY; for details type: +11: `kalign -showw'. +11: This is free software, and you are welcome to redistribute it +11: under certain conditions; consult the COPYING file for details. +11: +11: Please cite: +11: Lassmann, Timo. +11: "Kalign 3: multiple sequence alignment of large data sets." +11: Bioinformatics (2019) +11: https://doi.org/10.1093/bioinformatics/btz795 +11: +11: [2024-04-05 08:18:46] : LOG : Detected protein sequences. +11: [2024-04-05 08:18:46] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. +11: [2024-04-05 08:18:46] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +11: [2024-04-05 08:18:46] : LOG : Calculating pairwise distances + 8/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.04 sec +test 12 + Start 12: DSSIM_takes_a_min -11: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa" -11: Working Directory: /build/reproducible-path/kalign-3.4.0/tests -11: Test timeout computed to be: 1500 -10: [2024-04-05 08:12:30] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 +12: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests/dssim +12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests +12: Test timeout computed to be: 1500 +10: [2024-04-05 08:18:46] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00 10: >1al2_ad 10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF @@ -1279,46 +1341,20 @@ 10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 10: Q---- - 9/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.09 sec -test 12 - Start 12: DSSIM_takes_a_min - -12: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests/dssim -12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests -12: Test timeout computed to be: 1500 -11: -11: Kalign (3.4.0) -11: -11: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann -11: -11: This program comes with ABSOLUTELY NO WARRANTY; for details type: -11: `kalign -showw'. -11: This is free software, and you are welcome to redistribute it -11: under certain conditions; consult the COPYING file for details. -11: -11: Please cite: -11: Lassmann, Timo. -11: "Kalign 3: multiple sequence alignment of large data sets." -11: Bioinformatics (2019) -11: https://doi.org/10.1093/bioinformatics/btz795 -11: -11: [2024-04-05 08:12:30] : LOG : Detected protein sequences. -11: [2024-04-05 08:12:30] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. -11: [2024-04-05 08:12:30] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 -11: [2024-04-05 08:12:30] : LOG : Calculating pairwise distances -12: [2024-04-05 08:12:30] : LOG : DSSim - a simplistic sequence simulator. -12: [2024-04-05 08:12:30] : LOG : Protein alignments - 20 seq + 9/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.03 sec +12: [2024-04-05 08:18:46] : LOG : DSSim - a simplistic sequence simulator. +12: [2024-04-05 08:18:46] : LOG : Protein alignments - 20 seq +11: [2024-04-05 08:18:46] : LOG : CPU Time: 0.04u 00:00:00.04 Elapsed: 00:00:00.00 +11: [2024-04-05 08:18:46] : LOG : Building guide tree. +11: [2024-04-05 08:18:46] : LOG : CPU Time: 0.06u 00:00:00.05 Elapsed: 00:00:00.00 +11: [2024-04-05 08:18:46] : LOG : Aligning 1: 0 6300 0 0 1: 0 0 6300 6300 1: 0 0 0 0 1: 0 0 0 0 1: -1: [2024-04-05 08:12:30] : LOG : Testing correctness of AVX bpm. -11: [2024-04-05 08:12:30] : LOG : CPU Time: 0.04u 00:00:00.04 Elapsed: 00:00:00.00 -11: [2024-04-05 08:12:30] : LOG : Building guide tree. -11: [2024-04-05 08:12:30] : LOG : CPU Time: 0.06u 00:00:00.05 Elapsed: 00:00:00.00 -11: [2024-04-05 08:12:30] : LOG : Aligning -11: [2024-04-05 08:12:30] : LOG : CPU Time: 0.06u 00:00:00.06 Elapsed: 00:00:00.00 +1: [2024-04-05 08:18:46] : LOG : Testing correctness of AVX bpm. +11: [2024-04-05 08:18:47] : LOG : CPU Time: 0.19u 00:00:00.19 Elapsed: 00:00:01.00 11: >1ags_A 11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG 11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- @@ -1627,40 +1663,40 @@ 11: ----KNPDLREEKFA-DIKKAYDNAEQLLT----GDFYS-GTSKPGFVDYLLYPNIQRAY 11: WAAHIVPDFPLEAESFPGPN-YPRLSKWYKAL-ESIPEVAAASQPTENGVGFFKDYLGGS 11: PNYDYGLTKLSETI -10/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.41 sec +10/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.22 sec 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: Dyn AVX DYN/AVX -1: [2024-04-05 08:12:49] : LOG : Timing DYN 256 -1: [2024-04-05 08:12:56] : LOG : 3.425058 - dyn -1: [2024-04-05 08:12:56] : LOG : 0.000000 - bpm -1: [2024-04-05 08:12:56] : LOG : 0.259186 - bpm_block2 -1: [2024-04-05 08:12:56] : LOG : 0.276391 - bpm_block -11/12 Test #1: bpm_utest ........................ Passed 26.99 sec +1: [2024-04-05 08:18:58] : LOG : Timing DYN 256 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 3% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 4% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 5% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 6% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [=== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 7% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 8% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [==== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 9% [===== ] 10% [===== ] 10% [===== ] 10% 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[==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% -12: [2024-04-05 08:13:17] : LOG : Protein alignments - 1000 seq +12: [2024-04-05 08:19:02] : LOG : Protein alignments - 1000 seq +1: [2024-04-05 08:19:02] : LOG : 3.549647 - dyn +1: [2024-04-05 08:19:02] : LOG : 0.000000 - bpm +1: [2024-04-05 08:19:02] : LOG : 0.257726 - bpm_block2 +1: [2024-04-05 08:19:02] : LOG : 0.288611 - bpm_block +11/12 Test #1: bpm_utest ........................ Passed 16.22 sec 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% -12: [2024-04-05 08:14:13] : LOG : Protein alignments - 10000 seq +12: [2024-04-05 08:19:42] : LOG : Protein alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% -12: [2024-04-05 08:14:58] : LOG : DNA alignments - 20 seq +12: [2024-04-05 08:20:15] : LOG : DNA alignments - 20 seq 12: [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 0% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [ ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 1% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 2% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [= ] 3% [== ] 3% [== ] 3% [== ] 3% [== 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[==================================================] 100% [==================================================] 100% [==================================================] 100% -12: [2024-04-05 08:15:48] : LOG : DNA alignments - 1000 seq +12: [2024-04-05 08:20:28] : LOG : DNA alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% -12: [2024-04-05 08:16:26] : LOG : DNA alignments - 10000 seq +12: [2024-04-05 08:20:58] : LOG : DNA alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% -12/12 Test #12: DSSIM_takes_a_min ................ Passed 264.87 sec +12/12 Test #12: DSSIM_takes_a_min ................ Passed 152.54 sec 100% tests passed, 0 tests failed out of 12 -Total Test time (real) = 265.29 sec +Total Test time (real) = 152.63 sec make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/kalign/ - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/kalign-3.4.0/debian/kalign AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/kalign-3.4.0/debian/kalign AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1714,12 +1750,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/8001/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/8001/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/8157 and its subdirectories -I: Current time: Thu Apr 4 20:17:19 -12 2024 -I: pbuilder-time-stamp: 1712305039 +I: removing directory /srv/workspace/pbuilder/8001 and its subdirectories +I: Current time: Fri Apr 5 22:21:34 +14 2024 +I: pbuilder-time-stamp: 1712305294