Diff of the two buildlogs: -- --- b1/build.log 2024-04-23 19:10:18.845196769 +0000 +++ b2/build.log 2024-04-23 20:07:39.534311296 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Apr 23 06:39:45 -12 2024 -I: pbuilder-time-stamp: 1713897585 +I: Current time: Wed Apr 24 09:13:36 +14 2024 +I: pbuilder-time-stamp: 1713899616 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -34,52 +34,84 @@ dpkg-source: info: applying fix-debian-compileinfo.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/12326/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/32727/tmp/hooks/D01_modify_environment starting +debug: Running on ff4a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 23 19:14 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/32727/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/32727/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='661bb335e9d94838bb26bbae1d56d5b5' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='12326' - PS1='# ' - PS2='> ' + INVOCATION_ID=741e144b52cc4005889a9d6882f484f6 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=32727 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Dzc9AnNC/pbuilderrc_IfNC --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Dzc9AnNC/b1 --logfile b1/build.log mira_4.9.6-11.dsc' - SUDO_GID='110' - SUDO_UID='103' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Dzc9AnNC/pbuilderrc_gg5o --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Dzc9AnNC/b2 --logfile b2/build.log mira_4.9.6-11.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt64z 6.1.0-20-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-armmp-lpae #1 SMP Debian 6.1.85-1 (2024-04-11) armv7l GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 23 11:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/12326/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 23 11:24 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/32727/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -313,7 +345,7 @@ Get: 168 http://deb.debian.org/debian trixie/main armhf libfl-dev armhf 2.6.4-8.2+b2 [85.5 kB] Get: 169 http://deb.debian.org/debian trixie/main armhf xxd armhf 2:9.1.0016-1 [93.9 kB] Get: 170 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg-3+b1 [904 kB] -Fetched 447 MB in 12s (37.3 MB/s) +Fetched 447 MB in 23s (19.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package autoconf-archive. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19635 files and directories currently installed.) @@ -872,8 +904,8 @@ Setting up tzdata (2024a-1) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue Apr 23 18:43:40 UTC 2024. -Universal Time is now: Tue Apr 23 18:43:40 UTC 2024. +Local time is now: Tue Apr 23 19:18:24 UTC 2024. +Universal Time is now: Tue Apr 23 19:18:24 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:armhf (1.83.0-2+b2) ... @@ -1038,7 +1070,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/mira-4.9.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mira_4.9.6-11_source.changes +I: user script /srv/workspace/pbuilder/32727/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/32727/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/mira-4.9.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mira_4.9.6-11_source.changes dpkg-buildpackage: info: source package mira dpkg-buildpackage: info: source version 4.9.6-11 dpkg-buildpackage: info: source distribution unstable @@ -1217,8 +1253,8 @@ checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes -checking whether UID '1111' is supported by ustar format... yes -checking whether GID '1111' is supported by ustar format... yes +checking whether UID '2222' is supported by ustar format... yes +checking whether GID '2222' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking for a sed that does not truncate output... /usr/bin/sed checking whether to add --prefix as include path... yes @@ -1580,7 +1616,7 @@ # see bug #812681 find -name '*.ll' | sed -e 's/[.]ll$/.cc/' | xargs rm -f dh_auto_build - make -j3 + make -j4 make[2]: Entering directory '/build/reproducible-path/mira-4.9.6' make all-recursive make[3]: Entering directory '/build/reproducible-path/mira-4.9.6' @@ -1631,7 +1667,7 @@ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o phd.o phd.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o scf.o scf.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o ncbiinfoxml.o ncbiinfoxml.C -/bin/bash ../../ylwrap exp_flexer.ll lex.yy.c exp_flexer.cc -- flex +/bin/sh ../../ylwrap exp_flexer.ll lex.yy.c exp_flexer.cc -- flex g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o exp_flexer.o exp_flexer.cc rm -f libmirafio.a ar cru libmirafio.a annotationmappings.o exp.o generalio.o fasta.o fastq-mira.o phd.o scf.o ncbiinfoxml.o exp_flexer.o @@ -1657,19 +1693,19 @@ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o fileanddisk.o fileanddisk.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o misc.o misc.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o dptools.o dptools.C -fileanddisk.C: In function 'int64 myGZRead(gzFile_s*&, void*, uint64)': -fileanddisk.C:173:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] - 173 | strerror_r(errno,buf,1024); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o fmttext.o fmttext.C -rm -f libmiradptools.a -ar cru libmiradptools.a dptools.o -ar: `u' modifier ignored since `D' is the default (see `U') -ranlib libmiradptools.a rm -f libmirafmttext.a ar cru libmirafmttext.a fmttext.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmirafmttext.a +rm -f libmiradptools.a +ar cru libmiradptools.a dptools.o +ar: `u' modifier ignored since `D' is the default (see `U') +ranlib libmiradptools.a +fileanddisk.C: In function 'int64 myGZRead(gzFile_s*&, void*, uint64)': +fileanddisk.C:173:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] + 173 | strerror_r(errno,buf,1024); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~ rm -f libmirautil.a ar cru libmirautil.a machineinfo.o fileanddisk.o misc.o ar: `u' modifier ignored since `D' is the default (see `U') @@ -1677,8 +1713,8 @@ make[5]: Leaving directory '/build/reproducible-path/mira-4.9.6/src/util' Making all in mira make[5]: Entering directory '/build/reproducible-path/mira-4.9.6/src/mira' -Making .H out of .xxd adaptorsforclip.454.xxd.H Making .H out of .xxd adaptorsforclip.solexa.xxd.H +Making .H out of .xxd adaptorsforclip.454.xxd.H Making .H out of .xxd adaptorsforclip.iontor.xxd.H Making .H out of .xxd adaptorsregex.solexa.xxd.H Making .H out of .xxd adaptorsregex.iontor.xxd.H @@ -1688,6 +1724,7 @@ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o estassembly.o estassembly.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o hashstats_sdbg.o hashstats_sdbg.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o hashstats.o hashstats.C +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o skim.o skim.C hashstats.C:1088: warning: "CEBUG" redefined 1088 | #define CEBUG(bla) {cout << bla; cout.flush();} | @@ -1747,7 +1784,6 @@ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o skim.o skim.C In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function.hpp:30, @@ -1756,6 +1792,26 @@ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly.o assembly.C +In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, + from /usr/include/boost/container_hash/hash.hpp:14, + from /usr/include/boost/functional/hash/hash.hpp:6, + from /usr/include/boost/bimap/relation/mutant_relation.hpp:29, + from /usr/include/boost/bimap/detail/bimap_core.hpp:38, + from /usr/include/boost/bimap/bimap.hpp:61, + from /usr/include/boost/bimap.hpp:13, + from ../../src/io/annotationmappings.H:36, + from ../../src/mira/multitag.H:39, + from ../../src/mira/read.H:38, + from ../../src/mira/readpool.H:41, + from ../../src/mira/pcrcontainer.H:30, + from ../../src/mira/contig.H:42, + from ../../src/mira/assembly_info.H:33, + from assembly.H:33, + from assembly.C:28: +/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:51, from /usr/include/boost/thread/exceptions.hpp:20: /usr/include/c++/13/bits/stl_algobase.h: In function '_ForwardIterator std::__lower_bound(_ForwardIterator, _ForwardIterator, const _Tp&, _Compare) [with _ForwardIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, vector >::hashstat_t, allocator >::hashstat_t> > >; _Tp = HashStatistics >::hashstat_t; _Compare = __gnu_cxx::__ops::_Iter_comp_val >::hashstat_t&, const HashStatistics >::hashstat_t&)>]': @@ -2109,20 +2165,6 @@ /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/algorithm:61, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:33, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/date_time/time_clock.hpp:17, - from /usr/include/boost/thread/thread_time.hpp:9, - from /usr/include/boost/thread/lock_types.hpp:18, - from /usr/include/boost/thread/pthread/thread_data.hpp:12: -In function '_FIter std::lower_bound(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >::hashstat_t*, vector >::hashstat_t, allocator >::hashstat_t> > >; _Tp = HashStatistics >::hashstat_t; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', - inlined from 'uint32 HashStatistics::estimDigiNormCov(Read&) [with TVHASH_T = VLuint<128>]' at hashstats.C:3196:19: -/usr/include/c++/13/bits/stl_algo.h:2015:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 - 2015 | return std::__lower_bound(__first, __last, __val, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ - 2016 | __gnu_cxx::__ops::__iter_comp_val(__comp)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void __gnu_parallel::__parallel_sort(_RAIter, _RAIter, _Compare, multiway_mergesort_exact_tag) [with bool __stable = false; _RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]', inlined from 'void __gnu_parallel::__parallel_sort(_RAIter, _RAIter, _Compare, default_parallel_tag) [with bool __stable = false; _RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]' at /usr/include/c++/13/parallel/sort.h:189:2, inlined from 'void std::__parallel::sort(_RAIter, _RAIter, _Compare, _Parallelism) [with _RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&); _Parallelism = __gnu_parallel::default_parallel_tag]' at /usr/include/c++/13/parallel/algo.h:1658:42, @@ -2209,13 +2251,6 @@ /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -In function '_FIter std::lower_bound(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >::hashstat_t*, vector >::hashstat_t, allocator >::hashstat_t> > >; _Tp = HashStatistics >::hashstat_t; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', - inlined from 'uint32 HashStatistics::estimDigiNormCov(Read&) [with TVHASH_T = VLuint<256>]' at hashstats.C:3196:19: -/usr/include/c++/13/bits/stl_algo.h:2015:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 - 2015 | return std::__lower_bound(__first, __last, __val, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ - 2016 | __gnu_cxx::__ops::__iter_comp_val(__comp)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::dbgseq_t, int>*, vector::dbgseq_t, int>, allocator::dbgseq_t, int> > > >; _Distance = int; _Tp = pair::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse::dbgseq_t, int, bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)> >]': /usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::dbgseq_t, int>*, std::vector::dbgseq_t, int>, std::allocator::dbgseq_t, int> > > >' changed in GCC 7.1 135 | __push_heap(_RandomAccessIterator __first, @@ -2235,15 +2270,22 @@ /usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >' changed in GCC 7.1 135 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, vector >::dbgseq_t, int>, allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]': -/usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >' changed in GCC 7.1 -In function '_FIter std::lower_bound(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >::hashstat_t*, vector >::hashstat_t, allocator >::hashstat_t> > >; _Tp = HashStatistics >::hashstat_t; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', - inlined from 'uint32 HashStatistics::estimDigiNormCov(Read&) [with TVHASH_T = VLuint<512>]' at hashstats.C:3196:19: -/usr/include/c++/13/bits/stl_algo.h:2015:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 +In file included from /usr/include/c++/13/algorithm:61, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:33, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/date_time/time_clock.hpp:17, + from /usr/include/boost/thread/thread_time.hpp:9, + from /usr/include/boost/thread/lock_types.hpp:18, + from /usr/include/boost/thread/pthread/thread_data.hpp:12: +In function '_FIter std::lower_bound(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >::hashstat_t*, vector >::hashstat_t, allocator >::hashstat_t> > >; _Tp = HashStatistics >::hashstat_t; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', + inlined from 'uint32 HashStatistics::estimDigiNormCov(Read&) [with TVHASH_T = VLuint<128>]' at hashstats.C:3196:19: +/usr/include/c++/13/bits/stl_algo.h:2015:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 2015 | return std::__lower_bound(__first, __last, __val, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2016 | __gnu_cxx::__ops::__iter_comp_val(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, vector >::dbgseq_t, int>, allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]': +/usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >' changed in GCC 7.1 /usr/include/c++/13/parallel/merge.h: In function '_OutputIterator __gnu_parallel::__merge_advance_movc(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics >::dbgseq_t*; _RAIter2 = HashStatistics >::dbgseq_t*; _OutputIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]': /usr/include/c++/13/parallel/merge.h:105:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >' changed in GCC 7.1 105 | __merge_advance_movc(_RAIter1& __begin1, _RAIter1 __end1, @@ -2252,6 +2294,13 @@ /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +In function '_FIter std::lower_bound(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >::hashstat_t*, vector >::hashstat_t, allocator >::hashstat_t> > >; _Tp = HashStatistics >::hashstat_t; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', + inlined from 'uint32 HashStatistics::estimDigiNormCov(Read&) [with TVHASH_T = VLuint<256>]' at hashstats.C:3196:19: +/usr/include/c++/13/bits/stl_algo.h:2015:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 + 2015 | return std::__lower_bound(__first, __last, __val, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ + 2016 | __gnu_cxx::__ops::__iter_comp_val(__comp)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, vector >::dbgseq_t, int>, allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]': /usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >' changed in GCC 7.1 135 | __push_heap(_RandomAccessIterator __first, @@ -2270,6 +2319,13 @@ /usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >' changed in GCC 7.1 135 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ +In function '_FIter std::lower_bound(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >::hashstat_t*, vector >::hashstat_t, allocator >::hashstat_t> > >; _Tp = HashStatistics >::hashstat_t; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', + inlined from 'uint32 HashStatistics::estimDigiNormCov(Read&) [with TVHASH_T = VLuint<512>]' at hashstats.C:3196:19: +/usr/include/c++/13/bits/stl_algo.h:2015:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 + 2015 | return std::__lower_bound(__first, __last, __val, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ + 2016 | __gnu_cxx::__ops::__iter_comp_val(__comp)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, vector >::dbgseq_t, int>, allocator >::dbgseq_t, int> > > >; _Distance = int; _Tp = pair >::dbgseq_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]': /usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >' changed in GCC 7.1 /usr/include/c++/13/parallel/merge.h: In function '_OutputIterator __gnu_parallel::__merge_advance_movc(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics >::dbgseq_t*; _RAIter2 = HashStatistics >::dbgseq_t*; _OutputIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]': @@ -2413,20 +2469,6 @@ /usr/include/c++/13/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >' changed in GCC 7.1 491 | multiway_merge_loser_tree(_RAIterIterator __seqs_begin, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In function '_FIter std::lower_bound(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >::hashstat_t*, vector >::hashstat_t, allocator >::hashstat_t> > >; _Tp = HashStatistics >::hashstat_t; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', - inlined from 'bool HashStatistics::priv_dn_TestSingleSeq(Read&, std::vector&, std::vector&) [with TVHASH_T = VLuint<256>]' at hashstats.C:3080:19: -/usr/include/c++/13/bits/stl_algo.h:2015:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 - 2015 | return std::__lower_bound(__first, __last, __val, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ - 2016 | __gnu_cxx::__ops::__iter_comp_val(__comp)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function '_FIter std::lower_bound(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >::hashstat_t*, vector >::hashstat_t, allocator >::hashstat_t> > >; _Tp = HashStatistics >::hashstat_t; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', - inlined from 'bool HashStatistics::priv_dn_TestSingleSeq(Read&, std::vector&, std::vector&) [with TVHASH_T = VLuint<128>]' at hashstats.C:3080:19: -/usr/include/c++/13/bits/stl_algo.h:2015:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 - 2015 | return std::__lower_bound(__first, __last, __val, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ - 2016 | __gnu_cxx::__ops::__iter_comp_val(__comp)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, vector >::dbgseq_t, int>, allocator >::dbgseq_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, @@ -2496,6 +2538,20 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function '_FIter std::lower_bound(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >::hashstat_t*, vector >::hashstat_t, allocator >::hashstat_t> > >; _Tp = HashStatistics >::hashstat_t; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', + inlined from 'bool HashStatistics::priv_dn_TestSingleSeq(Read&, std::vector&, std::vector&) [with TVHASH_T = VLuint<256>]' at hashstats.C:3080:19: +/usr/include/c++/13/bits/stl_algo.h:2015:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 + 2015 | return std::__lower_bound(__first, __last, __val, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ + 2016 | __gnu_cxx::__ops::__iter_comp_val(__comp)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function '_FIter std::lower_bound(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >::hashstat_t*, vector >::hashstat_t, allocator >::hashstat_t> > >; _Tp = HashStatistics >::hashstat_t; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', + inlined from 'bool HashStatistics::priv_dn_TestSingleSeq(Read&, std::vector&, std::vector&) [with TVHASH_T = VLuint<128>]' at hashstats.C:3080:19: +/usr/include/c++/13/bits/stl_algo.h:2015:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 + 2015 | return std::__lower_bound(__first, __last, __val, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ + 2016 | __gnu_cxx::__ops::__iter_comp_val(__comp)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/parallel/multiway_merge.h: In function '_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = _LoserTreePointer >::dbgseq_t, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]': /usr/include/c++/13/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >' changed in GCC 7.1 491 | multiway_merge_loser_tree(_RAIterIterator __seqs_begin, @@ -2509,14 +2565,6 @@ 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >' changed in GCC 7.1 -In file included from /usr/include/c++/13/vector:72, - from /usr/include/boost/thread/pthread/thread_data.hpp:26: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const HashStatistics::hashstat_t&}; _Tp = HashStatistics::hashstat_t; _Alloc = std::allocator::hashstat_t>]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::hashstat_t, std::allocator::hashstat_t> >::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::dbgseq_t, int>}; _Tp = std::pair >::dbgseq_t, int>; _Alloc = std::allocator >::dbgseq_t, int> >]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::dbgseq_t, int>; _Alloc = std::allocator >::dbgseq_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::dbgseq_t**, std::vector >::dbgseq_t*, std::allocator >::dbgseq_t*> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:207:29: @@ -2577,6 +2625,14 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:72, + from /usr/include/boost/thread/pthread/thread_data.hpp:26: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const HashStatistics::hashstat_t&}; _Tp = HashStatistics::hashstat_t; _Alloc = std::allocator::hashstat_t>]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::hashstat_t, std::allocator::hashstat_t> >::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]', inlined from 'void HashStatistics::removeDustEndsFixed(uint8, uint32) [with TVHASH_T = long long unsigned int]' at hashstats.C:1862:21: @@ -2626,20 +2682,6 @@ /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In function '_FIter std::lower_bound(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >::hashstat_t*, vector >::hashstat_t, allocator >::hashstat_t> > >; _Tp = HashStatistics >::hashstat_t; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', - inlined from 'void HashStatistics::priv_arb_DoStuff(ReadPool&, size_t, std::vector&, uint32, std::vector&, bool, int32, int32, bool) [with TVHASH_T = VLuint<128>]' at hashstats.C:2501:27: -/usr/include/c++/13/bits/stl_algo.h:2015:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 - 2015 | return std::__lower_bound(__first, __last, __val, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ - 2016 | __gnu_cxx::__ops::__iter_comp_val(__comp)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function '_FIter std::lower_bound(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >::hashstat_t*, vector >::hashstat_t, allocator >::hashstat_t> > >; _Tp = HashStatistics >::hashstat_t; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', - inlined from 'void HashStatistics::priv_arb_DoStuff(ReadPool&, size_t, std::vector&, uint32, std::vector&, bool, int32, int32, bool) [with TVHASH_T = VLuint<128>]' at hashstats.C:2742:27: -/usr/include/c++/13/bits/stl_algo.h:2015:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 - 2015 | return std::__lower_bound(__first, __last, __val, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ - 2016 | __gnu_cxx::__ops::__iter_comp_val(__comp)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::dbgseq_t, int>*, vector >::dbgseq_t, int>, allocator >::dbgseq_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::dbgseq_t, int, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)> >]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, @@ -2705,12 +2747,34 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::dbgseq_t, int>*, std::vector >::dbgseq_t, int>, std::allocator >::dbgseq_t, int> > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function '_FIter std::lower_bound(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >::hashstat_t*, vector >::hashstat_t, allocator >::hashstat_t> > >; _Tp = HashStatistics >::hashstat_t; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', + inlined from 'void HashStatistics::priv_arb_DoStuff(ReadPool&, size_t, std::vector&, uint32, std::vector&, bool, int32, int32, bool) [with TVHASH_T = VLuint<128>]' at hashstats.C:2501:27: +/usr/include/c++/13/bits/stl_algo.h:2015:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 + 2015 | return std::__lower_bound(__first, __last, __val, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ + 2016 | __gnu_cxx::__ops::__iter_comp_val(__comp)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function '_FIter std::lower_bound(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >::hashstat_t*, vector >::hashstat_t, allocator >::hashstat_t> > >; _Tp = HashStatistics >::hashstat_t; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', + inlined from 'void HashStatistics::priv_arb_DoStuff(ReadPool&, size_t, std::vector&, uint32, std::vector&, bool, int32, int32, bool) [with TVHASH_T = VLuint<128>]' at hashstats.C:2742:27: +/usr/include/c++/13/bits/stl_algo.h:2015:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 + 2015 | return std::__lower_bound(__first, __last, __val, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ + 2016 | __gnu_cxx::__ops::__iter_comp_val(__comp)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const HashStatistics >::hashstat_t&}; _Tp = HashStatistics >::hashstat_t; _Alloc = std::allocator >::hashstat_t>]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::hashstat_t, std::allocator >::hashstat_t> >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const VLuint<128>&}; _Tp = VLuint<128>; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 +/usr/include/c++/13/parallel/multiway_merge.h: In function '_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = _LoserTreePointer >::dbgseq_t, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]': +/usr/include/c++/13/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >' changed in GCC 7.1 + 491 | multiway_merge_loser_tree(_RAIterIterator __seqs_begin, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +assembly.C: In member function 'void Assembly::transferContigReadTagsToReadpool(const Contig&, std::__cxx11::list::const_iterator)': +assembly.C:2438:6: note: parameter passing for argument of type 'const std::__cxx11::list::const_iterator' changed in GCC 7.1 + 2438 | void Assembly::transferContigReadTagsToReadpool(const Contig & con, const std::list::const_iterator bbContigI) + | ^~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = VLuint<128>; _Alloc = std::allocator >]', inlined from 'void HashStatistics::removeDustEndsFixed(uint8, uint32) [with TVHASH_T = VLuint<128>]' at hashstats.C:1862:21: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 @@ -2751,10 +2815,16 @@ /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -/usr/include/c++/13/parallel/multiway_merge.h: In function '_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = _LoserTreePointer >::dbgseq_t, bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)>; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]': -/usr/include/c++/13/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >' changed in GCC 7.1 - 491 | multiway_merge_loser_tree(_RAIterIterator __seqs_begin, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In function '_OutputIterator __gnu_parallel::__merge_advance(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics::dbgseq_t*; _RAIter2 = HashStatistics::dbgseq_t*; _OutputIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)]', + inlined from '_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, HashStatistics::dbgseq_t*>*, std::vector::dbgseq_t*, HashStatistics::dbgseq_t*>, std::allocator::dbgseq_t*, HashStatistics::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:970:44, + inlined from '_RAIterOut __gnu_parallel::multiway_merge(_RAIterPairIterator, _RAIterPairIterator, _RAIterOut, _DifferenceTp, _Compare, sequential_tag) [with _RAIterPairIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, HashStatistics::dbgseq_t*>*, std::vector::dbgseq_t*, HashStatistics::dbgseq_t*>, std::allocator::dbgseq_t*, HashStatistics::dbgseq_t*> > > >; _RAIterOut = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:1434:2, + inlined from 'void __gnu_parallel::__possibly_stable_multiway_merge::operator()(const _Seq_RAIter&, const _Seq_RAIter&, const _RAIter&, _Compare&, _DiffType) const [with _Seq_RAIter = __gnu_cxx::__normal_iterator::dbgseq_t*, HashStatistics::dbgseq_t*>*, std::vector::dbgseq_t*, HashStatistics::dbgseq_t*>, std::allocator::dbgseq_t*, HashStatistics::dbgseq_t*> > > >; _RAIter = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&); _DiffType = int]' at /usr/include/c++/13/parallel/multiway_mergesort.h:297:23, + inlined from 'void __gnu_parallel::parallel_sort_mwms_pu(_PMWMSSortingData<_RAIter>*, _Compare&) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)]' at /usr/include/c++/13/parallel/multiway_mergesort.h:375:39: +/usr/include/c++/13/parallel/merge.h:178:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >' changed in GCC 7.1 + 178 | return __merge_advance_movc(__begin1, __end1, __begin2, __end2, + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 179 | __target, __max_length, __comp); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function '_FIter std::lower_bound(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >::hashstat_t*, vector >::hashstat_t, allocator >::hashstat_t> > >; _Tp = HashStatistics >::hashstat_t; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', inlined from 'void HashStatistics::priv_arb_DoStuff(ReadPool&, size_t, std::vector&, uint32, std::vector&, bool, int32, int32, bool) [with TVHASH_T = VLuint<256>]' at hashstats.C:2501:27: /usr/include/c++/13/bits/stl_algo.h:2015:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 @@ -2769,16 +2839,6 @@ | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2016 | __gnu_cxx::__ops::__iter_comp_val(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function '_OutputIterator __gnu_parallel::__merge_advance(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics::dbgseq_t*; _RAIter2 = HashStatistics::dbgseq_t*; _OutputIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)]', - inlined from '_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, HashStatistics::dbgseq_t*>*, std::vector::dbgseq_t*, HashStatistics::dbgseq_t*>, std::allocator::dbgseq_t*, HashStatistics::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:970:44, - inlined from '_RAIterOut __gnu_parallel::multiway_merge(_RAIterPairIterator, _RAIterPairIterator, _RAIterOut, _DifferenceTp, _Compare, sequential_tag) [with _RAIterPairIterator = __gnu_cxx::__normal_iterator::dbgseq_t*, HashStatistics::dbgseq_t*>*, std::vector::dbgseq_t*, HashStatistics::dbgseq_t*>, std::allocator::dbgseq_t*, HashStatistics::dbgseq_t*> > > >; _RAIterOut = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:1434:2, - inlined from 'void __gnu_parallel::__possibly_stable_multiway_merge::operator()(const _Seq_RAIter&, const _Seq_RAIter&, const _RAIter&, _Compare&, _DiffType) const [with _Seq_RAIter = __gnu_cxx::__normal_iterator::dbgseq_t*, HashStatistics::dbgseq_t*>*, std::vector::dbgseq_t*, HashStatistics::dbgseq_t*>, std::allocator::dbgseq_t*, HashStatistics::dbgseq_t*> > > >; _RAIter = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&); _DiffType = int]' at /usr/include/c++/13/parallel/multiway_mergesort.h:297:23, - inlined from 'void __gnu_parallel::parallel_sort_mwms_pu(_PMWMSSortingData<_RAIter>*, _Compare&) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics::dbgseq_t&, const HashStatistics::dbgseq_t&)]' at /usr/include/c++/13/parallel/multiway_mergesort.h:375:39: -/usr/include/c++/13/parallel/merge.h:178:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::dbgseq_t*, std::vector::dbgseq_t, std::allocator::dbgseq_t> > >' changed in GCC 7.1 - 178 | return __merge_advance_movc(__begin1, __end1, __begin2, __end2, - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 179 | __target, __max_length, __comp); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const HashStatistics >::hashstat_t&}; _Tp = HashStatistics >::hashstat_t; _Alloc = std::allocator >::hashstat_t>]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::hashstat_t, std::allocator >::hashstat_t> >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: @@ -2825,6 +2885,16 @@ /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In function '_OutputIterator __gnu_parallel::__merge_advance(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics >::dbgseq_t*; _RAIter2 = HashStatistics >::dbgseq_t*; _OutputIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]', + inlined from '_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:970:44, + inlined from '_RAIterOut __gnu_parallel::multiway_merge(_RAIterPairIterator, _RAIterPairIterator, _RAIterOut, _DifferenceTp, _Compare, sequential_tag) [with _RAIterPairIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIterOut = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:1434:2, + inlined from 'void __gnu_parallel::__possibly_stable_multiway_merge::operator()(const _Seq_RAIter&, const _Seq_RAIter&, const _RAIter&, _Compare&, _DiffType) const [with _Seq_RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&); _DiffType = int]' at /usr/include/c++/13/parallel/multiway_mergesort.h:297:23, + inlined from 'void __gnu_parallel::parallel_sort_mwms_pu(_PMWMSSortingData<_RAIter>*, _Compare&) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]' at /usr/include/c++/13/parallel/multiway_mergesort.h:375:39: +/usr/include/c++/13/parallel/merge.h:178:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >' changed in GCC 7.1 + 178 | return __merge_advance_movc(__begin1, __end1, __begin2, __end2, + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 179 | __target, __max_length, __comp); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function '_FIter std::lower_bound(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >::hashstat_t*, vector >::hashstat_t, allocator >::hashstat_t> > >; _Tp = HashStatistics >::hashstat_t; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', inlined from 'void HashStatistics::priv_arb_DoStuff(ReadPool&, size_t, std::vector&, uint32, std::vector&, bool, int32, int32, bool) [with TVHASH_T = VLuint<512>]' at hashstats.C:2501:27: /usr/include/c++/13/bits/stl_algo.h:2015:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 @@ -2839,22 +2909,22 @@ | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2016 | __gnu_cxx::__ops::__iter_comp_val(__comp)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function '_OutputIterator __gnu_parallel::__merge_advance(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics >::dbgseq_t*; _RAIter2 = HashStatistics >::dbgseq_t*; _OutputIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]', - inlined from '_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:970:44, - inlined from '_RAIterOut __gnu_parallel::multiway_merge(_RAIterPairIterator, _RAIterPairIterator, _RAIterOut, _DifferenceTp, _Compare, sequential_tag) [with _RAIterPairIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIterOut = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:1434:2, - inlined from 'void __gnu_parallel::__possibly_stable_multiway_merge::operator()(const _Seq_RAIter&, const _Seq_RAIter&, const _RAIter&, _Compare&, _DiffType) const [with _Seq_RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&); _DiffType = int]' at /usr/include/c++/13/parallel/multiway_mergesort.h:297:23, - inlined from 'void __gnu_parallel::parallel_sort_mwms_pu(_PMWMSSortingData<_RAIter>*, _Compare&) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]' at /usr/include/c++/13/parallel/multiway_mergesort.h:375:39: -/usr/include/c++/13/parallel/merge.h:178:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >' changed in GCC 7.1 - 178 | return __merge_advance_movc(__begin1, __end1, __begin2, __end2, - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 179 | __target, __max_length, __comp); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const HashStatistics >::hashstat_t&}; _Tp = HashStatistics >::hashstat_t; _Alloc = std::allocator >::hashstat_t>]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::hashstat_t, std::allocator >::hashstat_t> >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const VLuint<512>&}; _Tp = VLuint<512>; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 +In function '_OutputIterator __gnu_parallel::__merge_advance(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics >::dbgseq_t*; _RAIter2 = HashStatistics >::dbgseq_t*; _OutputIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]', + inlined from '_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:970:44, + inlined from '_RAIterOut __gnu_parallel::multiway_merge(_RAIterPairIterator, _RAIterPairIterator, _RAIterOut, _DifferenceTp, _Compare, sequential_tag) [with _RAIterPairIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIterOut = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:1434:2, + inlined from 'void __gnu_parallel::__possibly_stable_multiway_merge::operator()(const _Seq_RAIter&, const _Seq_RAIter&, const _RAIter&, _Compare&, _DiffType) const [with _Seq_RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&); _DiffType = int]' at /usr/include/c++/13/parallel/multiway_mergesort.h:297:23, + inlined from 'void __gnu_parallel::parallel_sort_mwms_pu(_PMWMSSortingData<_RAIter>*, _Compare&) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]' at /usr/include/c++/13/parallel/multiway_mergesort.h:375:39: +/usr/include/c++/13/parallel/merge.h:178:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >' changed in GCC 7.1 + 178 | return __merge_advance_movc(__begin1, __end1, __begin2, __end2, + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 179 | __target, __max_length, __comp); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = VLuint<512>; _Alloc = std::allocator >]', inlined from 'void HashStatistics::removeDustEndsFixed(uint8, uint32) [with TVHASH_T = VLuint<512>]' at hashstats.C:1862:21: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 @@ -2895,16 +2965,7 @@ /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In function '_OutputIterator __gnu_parallel::__merge_advance(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics >::dbgseq_t*; _RAIter2 = HashStatistics >::dbgseq_t*; _OutputIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]', - inlined from '_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:970:44, - inlined from '_RAIterOut __gnu_parallel::multiway_merge(_RAIterPairIterator, _RAIterPairIterator, _RAIterOut, _DifferenceTp, _Compare, sequential_tag) [with _RAIterPairIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIterOut = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:1434:2, - inlined from 'void __gnu_parallel::__possibly_stable_multiway_merge::operator()(const _Seq_RAIter&, const _Seq_RAIter&, const _RAIter&, _Compare&, _DiffType) const [with _Seq_RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&); _DiffType = int]' at /usr/include/c++/13/parallel/multiway_mergesort.h:297:23, - inlined from 'void __gnu_parallel::parallel_sort_mwms_pu(_PMWMSSortingData<_RAIter>*, _Compare&) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]' at /usr/include/c++/13/parallel/multiway_mergesort.h:375:39: -/usr/include/c++/13/parallel/merge.h:178:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >' changed in GCC 7.1 - 178 | return __merge_advance_movc(__begin1, __end1, __begin2, __end2, - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 179 | __target, __max_length, __comp); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig.o contig.C In file included from /usr/include/c++/13/parallel/sort.h:44, from /usr/include/c++/13/parallel/algo.h:45, from /usr/include/c++/13/parallel/algorithm:37, @@ -2915,15 +2976,6 @@ 395 | parallel_sort_mwms(_RAIter __begin, _RAIter __end, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/13/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >' changed in GCC 7.1 -/usr/include/c++/13/parallel/multiway_mergesort.h: In function 'void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, _ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]': -/usr/include/c++/13/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 -/usr/include/c++/13/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 -/usr/include/c++/13/parallel/multiway_mergesort.h: In function 'void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, _ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]': -/usr/include/c++/13/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 -/usr/include/c++/13/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 -/usr/include/c++/13/parallel/multiway_mergesort.h: In function 'void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, _ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]': -/usr/include/c++/13/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 -/usr/include/c++/13/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 In function '_OutputIterator __gnu_parallel::__merge_advance(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics >::dbgseq_t*; _RAIter2 = HashStatistics >::dbgseq_t*; _OutputIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]', inlined from '_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:970:44, inlined from '_RAIterOut __gnu_parallel::multiway_merge(_RAIterPairIterator, _RAIterPairIterator, _RAIterOut, _DifferenceTp, _Compare, sequential_tag) [with _RAIterPairIterator = __gnu_cxx::__normal_iterator >::dbgseq_t*, HashStatistics >::dbgseq_t*>*, std::vector >::dbgseq_t*, HashStatistics >::dbgseq_t*>, std::allocator >::dbgseq_t*, HashStatistics >::dbgseq_t*> > > >; _RAIterOut = __gnu_cxx::__normal_iterator >::dbgseq_t*, std::vector >::dbgseq_t, std::allocator >::dbgseq_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::dbgseq_t&, const HashStatistics >::dbgseq_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:1434:2, @@ -2934,6 +2986,32 @@ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 | __target, __max_length, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/parallel/multiway_mergesort.h: In function 'void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, _ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]': +/usr/include/c++/13/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 +/usr/include/c++/13/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 +/usr/include/c++/13/parallel/multiway_mergesort.h: In function 'void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, _ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]': +/usr/include/c++/13/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 +/usr/include/c++/13/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 +/usr/include/c++/13/parallel/multiway_mergesort.h: In function 'void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, _ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]': +/usr/include/c++/13/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 +/usr/include/c++/13/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 +In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, + from /usr/include/boost/container_hash/hash.hpp:14, + from /usr/include/boost/functional/hash/hash.hpp:6, + from /usr/include/boost/bimap/relation/mutant_relation.hpp:29, + from /usr/include/boost/bimap/detail/bimap_core.hpp:38, + from /usr/include/boost/bimap/bimap.hpp:61, + from /usr/include/boost/bimap.hpp:13, + from ../../src/io/annotationmappings.H:36, + from ../../src/mira/multitag.H:39, + from ../../src/mira/read.H:38, + from ../../src/mira/readpool.H:41, + from ../../src/mira/pcrcontainer.H:30, + from contig.H:42, + from contig.C:28: +/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t*, vector::hashstat_t, allocator::hashstat_t> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter::hashstat_t&, const HashStatistics::hashstat_t&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, @@ -3045,6 +3123,7 @@ /usr/include/c++/13/parallel/algo.h:1751:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >' changed in GCC 7.1 1751 | sort(__begin, __end, __comp, __gnu_parallel::default_parallel_tag()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o read.o read.C In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = HashStatistics::hashstat_t; _Alloc = std::allocator::hashstat_t>]', inlined from 'void HashStatistics::prepareStreamAddNextSequence(const void*, uint64, const char*, uint8, bool) [with TVHASH_T = long long unsigned int]' at hashstats.C:829:50: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >' changed in GCC 7.1 @@ -3854,7 +3933,6 @@ /usr/include/c++/13/parallel/algo.h:1751:11: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >' changed in GCC 7.1 1751 | sort(__begin, __end, __comp, __gnu_parallel::default_parallel_tag()); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly.o assembly.C In function 'void __gnu_parallel::__parallel_sort(_RAIter, _RAIter, _Compare, multiway_mergesort_exact_tag) [with bool __stable = false; _RAIter = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _Compare = bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)]', inlined from 'void __gnu_parallel::__parallel_sort(_RAIter, _RAIter, _Compare, default_parallel_tag) [with bool __stable = false; _RAIter = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _Compare = bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)]' at /usr/include/c++/13/parallel/sort.h:189:2, inlined from 'void std::__parallel::sort(_RAIter, _RAIter, _Compare, _Parallelism) [with _RAIter = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _Compare = bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&); _Parallelism = __gnu_parallel::default_parallel_tag]' at /usr/include/c++/13/parallel/algo.h:1658:42, @@ -3954,6 +4032,20 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, + from /usr/include/boost/container_hash/hash.hpp:14, + from /usr/include/boost/functional/hash/hash.hpp:6, + from /usr/include/boost/bimap/relation/mutant_relation.hpp:29, + from /usr/include/boost/bimap/detail/bimap_core.hpp:38, + from /usr/include/boost/bimap/bimap.hpp:61, + from /usr/include/boost/bimap.hpp:13, + from ../../src/io/annotationmappings.H:36, + from ../../src/mira/multitag.H:39, + from ../../src/mira/read.H:38, + from read.C:28: +/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = HashStatistics >::hashstat_t; _Alloc = std::allocator >::hashstat_t>]', inlined from 'void HashStatistics::prepareStreamAddNextSequence(const void*, uint64, const char*, uint8, bool) [with TVHASH_T = VLuint<128>]' at hashstats.C:829:50: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 @@ -3974,6 +4066,48 @@ /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +read.C: In member function 'void Read::dumpAsReadname(std::ostream&)': +read.C:1242:25: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] + 1242 | sprintf(buffer, "%x", this) ; + | ~^ ~~~~ + | | | + | | Read* + | unsigned int +read.C: In member function 'void Read::dumpAsFASTA(std::ostream&, bool, bool, bool)': +read.C:1273:25: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] + 1273 | sprintf(buffer, "%x", this) ; + | ~^ ~~~~ + | | | + | | Read* + | unsigned int +read.C: In member function 'void Read::dumpAsFASTQ(std::ostream&, bool, bool, bool)': +read.C:1357:25: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] + 1357 | sprintf(buffer, "%x", this) ; + | ~^ ~~~~ + | | | + | | Read* + | unsigned int +read.C: In member function 'void Read::dumpAsFASTAQual(std::ostream&, bool, bool, bool)': +read.C:1458:25: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] + 1458 | sprintf(buffer, "%x", this) ; + | ~^ ~~~~ + | | | + | | Read* + | unsigned int +read.C: In member function 'void Read::dumpAsCAF(std::ostream&)': +read.C:1530:25: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] + 1530 | sprintf(buffer, "%x", this) ; + | ~^ ~~~~ + | | | + | | Read* + | unsigned int +read.C: In member function 'void Read::dumpAsMAF(std::ostream&)': +read.C:1945:25: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] + 1945 | sprintf(buffer, "%x", this) ; + | ~^ ~~~~ + | | | + | | Read* + | unsigned int In function '_FIter std::lower_bound(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >::hashstat_t*, vector >::hashstat_t, allocator >::hashstat_t> > >; _Tp = HashStatistics >::hashstat_t; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', inlined from 'uint32 HashStatistics::checkBaitHit(Read&, bool) [with TVHASH_T = VLuint<128>]' at hashstats.C:2941:23: /usr/include/c++/13/bits/stl_algo.h:2015:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 @@ -3998,25 +4132,6 @@ /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, - from /usr/include/boost/container_hash/hash.hpp:14, - from /usr/include/boost/functional/hash/hash.hpp:6, - from /usr/include/boost/bimap/relation/mutant_relation.hpp:29, - from /usr/include/boost/bimap/detail/bimap_core.hpp:38, - from /usr/include/boost/bimap/bimap.hpp:61, - from /usr/include/boost/bimap.hpp:13, - from ../../src/io/annotationmappings.H:36, - from ../../src/mira/multitag.H:39, - from ../../src/mira/read.H:38, - from ../../src/mira/readpool.H:41, - from ../../src/mira/pcrcontainer.H:30, - from ../../src/mira/contig.H:42, - from ../../src/mira/assembly_info.H:33, - from assembly.H:33, - from assembly.C:28: -/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ In function 'void __gnu_parallel::__parallel_sort(_RAIter, _RAIter, _Compare, multiway_mergesort_exact_tag) [with bool __stable = false; _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', inlined from 'void __gnu_parallel::__parallel_sort(_RAIter, _RAIter, _Compare, default_parallel_tag) [with bool __stable = false; _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]' at /usr/include/c++/13/parallel/sort.h:189:2, inlined from 'void std::__parallel::sort(_RAIter, _RAIter, _Compare, _Parallelism) [with _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&); _Parallelism = __gnu_parallel::default_parallel_tag]' at /usr/include/c++/13/parallel/algo.h:1658:42, @@ -4280,6 +4395,35 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:72, + from /usr/include/boost/thread/pthread/thread_data.hpp:26, + from /usr/include/boost/thread/pthread/condition_variable.hpp:15, + from /usr/include/boost/thread/condition_variable.hpp:16, + from /usr/include/boost/thread/condition.hpp:13, + from ../../src/mira/skim.H:27: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair::vhrap_t, int>}; _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > >::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/bits/stl_algo.h:61, + from /usr/include/c++/13/algorithm:61, + from /usr/include/boost/function/detail/prologue.hpp:14: +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Distance = int; _Tp = pair::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 + 135 | __push_heap(_RandomAccessIterator __first, + | ^~~~~~~~~~~ +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Distance = int; _Tp = pair::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 135 | __push_heap(_RandomAccessIterator __first, + | ^~~~~~~~~~~ +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = HashStatistics >::hashstat_t; _Alloc = std::allocator >::hashstat_t>]', inlined from 'void HashStatistics::prepareStreamAddNextSequence(const void*, uint64, const char*, uint8, bool) [with TVHASH_T = VLuint<512>]' at hashstats.C:829:50: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 @@ -4290,16 +4434,161 @@ /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 135 | __push_heap(_RandomAccessIterator __first, + | ^~~~~~~~~~~ +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 135 | __push_heap(_RandomAccessIterator __first, + | ^~~~~~~~~~~ +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Distance = int; _Tp = pair::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 + 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Distance = int; _Tp = pair::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 + 1918 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 + 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 1918 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = HashStatistics >::hashstat_t; _Alloc = std::allocator >::hashstat_t>]', inlined from 'void HashStatistics::prepareStreamAddNextSequence(const void*, uint64, const char*, uint8, bool) [with TVHASH_T = VLuint<512>]' at hashstats.C:869:50: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 1918 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 1918 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 + 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 + 1812 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = HashStatistics >::hashstat_t; _Alloc = std::allocator >::hashstat_t>]', inlined from 'void HashStatistics::prepareStreamAddNextSequence(const void*, uint64, const char*, uint8, bool) [with TVHASH_T = VLuint<512>]' at hashstats.C:829:50: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair::vhrap_t, int>}; _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::vhrap_t*, HashStatistics::vhrap_t*>*, std::vector::vhrap_t*, HashStatistics::vhrap_t*>, std::allocator::vhrap_t*, HashStatistics::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::vhrap_t**, std::vector::vhrap_t*, std::allocator::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:207:29: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]', + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Compare = __gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::vhrap_t*, HashStatistics::vhrap_t*>*, std::vector::vhrap_t*, HashStatistics::vhrap_t*>, std::allocator::vhrap_t*, HashStatistics::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::vhrap_t**, std::vector::vhrap_t*, std::allocator::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:208:29: +/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 + 1947 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1948 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1949 | __comp); + | ~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Compare = __gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::vhrap_t*, HashStatistics::vhrap_t*>*, std::vector::vhrap_t*, HashStatistics::vhrap_t*>, std::allocator::vhrap_t*, HashStatistics::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::vhrap_t**, std::vector::vhrap_t*, std::allocator::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:208:29: +/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 + 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 + 1864 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair::vhrap_t, int>}; _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::vhrap_t*, HashStatistics::vhrap_t*>*, std::vector::vhrap_t*, HashStatistics::vhrap_t*>, std::allocator::vhrap_t*, HashStatistics::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::vhrap_t**, std::vector::vhrap_t*, std::allocator::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:212:29: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair::vhrap_t, int>}; _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair::vhrap_t, int>; _Sequence = std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > >; _Compare = __gnu_parallel::_LexicographicReverse::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::vhrap_t*, HashStatistics::vhrap_t*>*, std::vector::vhrap_t*, HashStatistics::vhrap_t*>, std::allocator::vhrap_t*, HashStatistics::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::vhrap_t**, std::vector::vhrap_t*, std::allocator::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:281:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair::vhrap_t, int>}; _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair::vhrap_t, int>; _Sequence = std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > >; _Compare = __gnu_parallel::_LexicographicReverse::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::vhrap_t*, HashStatistics::vhrap_t*>*, std::vector::vhrap_t*, HashStatistics::vhrap_t*>, std::allocator::vhrap_t*, HashStatistics::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::vhrap_t**, std::vector::vhrap_t*, std::allocator::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:293:30: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair::vhrap_t, int>}; _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair::vhrap_t, int>; _Sequence = std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > >; _Compare = __gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::vhrap_t*, HashStatistics::vhrap_t*>*, std::vector::vhrap_t*, HashStatistics::vhrap_t*>, std::allocator::vhrap_t*, HashStatistics::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::vhrap_t**, std::vector::vhrap_t*, std::allocator::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:307:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair::vhrap_t, int>}; _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair::vhrap_t, int>; _Sequence = std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > >; _Compare = __gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::vhrap_t*, HashStatistics::vhrap_t*>*, std::vector::vhrap_t*, HashStatistics::vhrap_t*>, std::allocator::vhrap_t*, HashStatistics::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::vhrap_t**, std::vector::vhrap_t*, std::allocator::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:318:30: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function '_FIter std::lower_bound(_FIter, _FIter, const _Tp&, _Compare) [with _FIter = __gnu_cxx::__normal_iterator >::hashstat_t*, vector >::hashstat_t, allocator >::hashstat_t> > >; _Tp = HashStatistics >::hashstat_t; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', inlined from 'uint32 HashStatistics::checkBaitHit(Read&, bool) [with TVHASH_T = VLuint<512>]' at hashstats.C:2941:23: /usr/include/c++/13/bits/stl_algo.h:2015:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 @@ -4324,6 +4613,95 @@ /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 1812 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:207:29: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]', + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:208:29: +/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 1947 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1948 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1949 | __comp); + | ~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:208:29: +/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 1864 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:212:29: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:281:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:293:30: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:307:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:318:30: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:72, + from ../../src/util/misc.H:35, + from ../../src/errorhandling/errorhandling.H:37, + from ../../src/mira/read.H:34: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'static bool Read::staticInitialiser()' at read.C:230:32: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'static bool Read::staticInitialiser()' at read.C:232:34: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair::hashstat_t, int>}; _Tp = std::pair::hashstat_t, int>; _Alloc = std::allocator::hashstat_t, int> >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: @@ -4375,8 +4753,17 @@ /usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >' changed in GCC 7.1 135 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::hashstat_t, int>*, vector >::hashstat_t, int>, allocator >::hashstat_t, int> > > >; _Distance = int; _Tp = pair >::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic >::hashstat_t, int, bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)> >]': /usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t, int>*, std::vector >::hashstat_t, int>, std::allocator >::hashstat_t, int> > > >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 1812 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 /usr/include/c++/13/parallel/merge.h: In function '_OutputIterator __gnu_parallel::__merge_advance_movc(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics >::hashstat_t*; _RAIter2 = HashStatistics >::hashstat_t*; _OutputIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]': /usr/include/c++/13/parallel/merge.h:105:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 105 | __merge_advance_movc(_RAIter1& __begin1, _RAIter1 __end1, @@ -4387,6 +4774,66 @@ | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t, int>*, vector::hashstat_t, int>, allocator::hashstat_t, int> > > >; _Distance = int; _Tp = pair::hashstat_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::hashstat_t, int, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)> >]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >' changed in GCC 7.1 +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:207:29: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]', + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:208:29: +/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 1947 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1948 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1949 | __comp); + | ~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:208:29: +/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 1864 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:212:29: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:281:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:293:30: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:307:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:318:30: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::hashstat_t, int>*, vector::hashstat_t, int>, allocator::hashstat_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::hashstat_t, int, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)> >]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, @@ -4446,6 +4893,15 @@ 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 1812 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair::hashstat_t, int>}; _Tp = std::pair::hashstat_t, int>; _Alloc = std::allocator::hashstat_t, int> >]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair::hashstat_t, int>; _Alloc = std::allocator::hashstat_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::hashstat_t*, HashStatistics::hashstat_t*>*, std::vector::hashstat_t*, HashStatistics::hashstat_t*>, std::allocator::hashstat_t*, HashStatistics::hashstat_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::hashstat_t**, std::vector::hashstat_t*, std::allocator::hashstat_t*> > >; _Compare = bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:207:29: @@ -4506,6 +4962,66 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::hashstat_t, int>*, std::vector::hashstat_t, int>, std::allocator::hashstat_t, int> > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:207:29: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]', + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:208:29: +/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 1947 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1948 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1949 | __comp); + | ~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:208:29: +/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 1864 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:212:29: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:281:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:293:30: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:307:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:318:30: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/parallel/multiway_mergesort.h:40: /usr/include/c++/13/parallel/multiway_merge.h: In function '_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = _LoserTree::hashstat_t, bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)>; _RAIterIterator = __gnu_cxx::__normal_iterator::hashstat_t*, HashStatistics::hashstat_t*>*, std::vector::hashstat_t*, HashStatistics::hashstat_t*>, std::allocator::hashstat_t*, HashStatistics::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics::hashstat_t&, const HashStatistics::hashstat_t&)]': /usr/include/c++/13/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::hashstat_t*, std::vector::hashstat_t, std::allocator::hashstat_t> > >' changed in GCC 7.1 @@ -4740,10 +5256,6 @@ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 | __target, __max_length, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -assembly.C: In member function 'void Assembly::transferContigReadTagsToReadpool(const Contig&, std::__cxx11::list::const_iterator)': -assembly.C:2438:6: note: parameter passing for argument of type 'const std::__cxx11::list::const_iterator' changed in GCC 7.1 - 2438 | void Assembly::transferContigReadTagsToReadpool(const Contig & con, const std::list::const_iterator bbContigI) - | ^~~~~~~~ In function '_OutputIterator __gnu_parallel::__merge_advance(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics >::hashstat_t*; _RAIter2 = HashStatistics >::hashstat_t*; _OutputIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', inlined from '_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:970:44, inlined from '_RAIterOut __gnu_parallel::multiway_merge(_RAIterPairIterator, _RAIterPairIterator, _RAIterOut, _DifferenceTp, _Compare, sequential_tag) [with _RAIterPairIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIterOut = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:1434:2, @@ -4754,398 +5266,8 @@ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 | __target, __max_length, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:72, - from /usr/include/boost/thread/pthread/thread_data.hpp:26, - from /usr/include/boost/thread/pthread/condition_variable.hpp:15, - from /usr/include/boost/thread/condition_variable.hpp:16, - from /usr/include/boost/thread/condition.hpp:13, - from ../../src/mira/skim.H:27: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair::vhrap_t, int>}; _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > >::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/bits/stl_algo.h:61, - from /usr/include/c++/13/algorithm:61, - from /usr/include/boost/function/detail/prologue.hpp:14: -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Distance = int; _Tp = pair::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 - 135 | __push_heap(_RandomAccessIterator __first, - | ^~~~~~~~~~~ -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Distance = int; _Tp = pair::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 135 | __push_heap(_RandomAccessIterator __first, - | ^~~~~~~~~~~ -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 135 | __push_heap(_RandomAccessIterator __first, - | ^~~~~~~~~~~ -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 135 | __push_heap(_RandomAccessIterator __first, - | ^~~~~~~~~~~ -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Distance = int; _Tp = pair::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 - 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Distance = int; _Tp = pair::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 - 1918 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 - 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 1918 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 1918 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Distance = int; _Tp = pair >::vhrap_t, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 1918 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 - 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 - 1812 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair::vhrap_t, int>}; _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::vhrap_t*, HashStatistics::vhrap_t*>*, std::vector::vhrap_t*, HashStatistics::vhrap_t*>, std::allocator::vhrap_t*, HashStatistics::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::vhrap_t**, std::vector::vhrap_t*, std::allocator::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:207:29: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]', - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Compare = __gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::vhrap_t*, HashStatistics::vhrap_t*>*, std::vector::vhrap_t*, HashStatistics::vhrap_t*>, std::allocator::vhrap_t*, HashStatistics::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::vhrap_t**, std::vector::vhrap_t*, std::allocator::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:208:29: -/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 - 1947 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1948 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1949 | __comp); - | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)> >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator::vhrap_t, int>*, vector::vhrap_t, int>, allocator::vhrap_t, int> > > >; _Compare = __gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::vhrap_t*, HashStatistics::vhrap_t*>*, std::vector::vhrap_t*, HashStatistics::vhrap_t*>, std::allocator::vhrap_t*, HashStatistics::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::vhrap_t**, std::vector::vhrap_t*, std::allocator::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:208:29: -/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 - 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 - 1864 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair::vhrap_t, int>}; _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::vhrap_t*, HashStatistics::vhrap_t*>*, std::vector::vhrap_t*, HashStatistics::vhrap_t*>, std::allocator::vhrap_t*, HashStatistics::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::vhrap_t**, std::vector::vhrap_t*, std::allocator::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:212:29: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair::vhrap_t, int>}; _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair::vhrap_t, int>; _Sequence = std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > >; _Compare = __gnu_parallel::_LexicographicReverse::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::vhrap_t*, HashStatistics::vhrap_t*>*, std::vector::vhrap_t*, HashStatistics::vhrap_t*>, std::allocator::vhrap_t*, HashStatistics::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::vhrap_t**, std::vector::vhrap_t*, std::allocator::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:281:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair::vhrap_t, int>}; _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair::vhrap_t, int>; _Sequence = std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > >; _Compare = __gnu_parallel::_LexicographicReverse::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::vhrap_t*, HashStatistics::vhrap_t*>*, std::vector::vhrap_t*, HashStatistics::vhrap_t*>, std::allocator::vhrap_t*, HashStatistics::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::vhrap_t**, std::vector::vhrap_t*, std::allocator::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:293:30: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair::vhrap_t, int>}; _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair::vhrap_t, int>; _Sequence = std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > >; _Compare = __gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::vhrap_t*, HashStatistics::vhrap_t*>*, std::vector::vhrap_t*, HashStatistics::vhrap_t*>, std::allocator::vhrap_t*, HashStatistics::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::vhrap_t**, std::vector::vhrap_t*, std::allocator::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:307:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair::vhrap_t, int>}; _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair::vhrap_t, int>; _Alloc = std::allocator::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair::vhrap_t, int>; _Sequence = std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > >; _Compare = __gnu_parallel::_Lexicographic::vhrap_t, int, bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator::vhrap_t*, HashStatistics::vhrap_t*>*, std::vector::vhrap_t*, HashStatistics::vhrap_t*>, std::allocator::vhrap_t*, HashStatistics::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator::vhrap_t**, std::vector::vhrap_t*, std::allocator::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics::vhrap_t&, const HashStatistics::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:318:30: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::vhrap_t, int>*, std::vector::vhrap_t, int>, std::allocator::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 1812 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:207:29: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]', - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:208:29: -/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 1947 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1948 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1949 | __comp); - | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:208:29: -/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 1864 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:212:29: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:281:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:293:30: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:307:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:318:30: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 1812 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:207:29: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]', - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:208:29: -/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 1947 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1948 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1949 | __comp); - | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:208:29: -/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 1864 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:212:29: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:281:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:293:30: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:307:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:318:30: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig.o contig.C -In function '_OutputIterator __gnu_parallel::__merge_advance(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics >::hashstat_t*; _RAIter2 = HashStatistics >::hashstat_t*; _OutputIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', - inlined from '_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:970:44, - inlined from '_RAIterOut __gnu_parallel::multiway_merge(_RAIterPairIterator, _RAIterPairIterator, _RAIterOut, _DifferenceTp, _Compare, sequential_tag) [with _RAIterPairIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIterOut = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:1434:2, - inlined from 'void __gnu_parallel::__possibly_stable_multiway_merge::operator()(const _Seq_RAIter&, const _Seq_RAIter&, const _RAIter&, _Compare&, _DiffType) const [with _Seq_RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&); _DiffType = int]' at /usr/include/c++/13/parallel/multiway_mergesort.h:297:23, - inlined from 'void __gnu_parallel::parallel_sort_mwms_pu(_PMWMSSortingData<_RAIter>*, _Compare&) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]' at /usr/include/c++/13/parallel/multiway_mergesort.h:375:39: -/usr/include/c++/13/parallel/merge.h:178:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 - 178 | return __merge_advance_movc(__begin1, __end1, __begin2, __end2, - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 179 | __target, __max_length, __comp); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]': -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 1812 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:207:29: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]', - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:208:29: -/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 1947 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1948 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1949 | __comp); - | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)> >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >::vhrap_t, int>*, vector >::vhrap_t, int>, allocator >::vhrap_t, int> > > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:208:29: -/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 1864 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:212:29: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:281:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_LexicographicReverse >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:293:30: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:307:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >::vhrap_t, int>}; _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Alloc = std::allocator >::vhrap_t, int> >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair >::vhrap_t, int>; _Sequence = std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > >; _Compare = __gnu_parallel::_Lexicographic >::vhrap_t, int, bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)>]' at /usr/include/c++/13/bits/stl_queue.h:748:13, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator >::vhrap_t*, HashStatistics >::vhrap_t*>*, std::vector >::vhrap_t*, HashStatistics >::vhrap_t*>, std::allocator >::vhrap_t*, HashStatistics >::vhrap_t*> > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator >::vhrap_t**, std::vector >::vhrap_t*, std::allocator >::vhrap_t*> > >; _Compare = bool (*)(const HashStatistics >::vhrap_t&, const HashStatistics >::vhrap_t&)]' at /usr/include/c++/13/parallel/multiseq_selection.h:318:30: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::vhrap_t, int>*, std::vector >::vhrap_t, int>, std::allocator >::vhrap_t, int> > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_analysis.o contig_analysis.C +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o ads.o ads.C In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, from /usr/include/boost/container_hash/hash.hpp:14, from /usr/include/boost/functional/hash/hash.hpp:6, @@ -5158,117 +5280,21 @@ from ../../src/mira/read.H:38, from ../../src/mira/readpool.H:41, from ../../src/mira/pcrcontainer.H:30, - from contig.H:42, - from contig.C:28: + from ../../src/mira/contig.H:42, + from contig_analysis.C:28: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ -In function '_OutputIterator __gnu_parallel::__merge_advance(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics >::hashstat_t*; _RAIter2 = HashStatistics >::hashstat_t*; _OutputIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', - inlined from '_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:970:44, - inlined from '_RAIterOut __gnu_parallel::multiway_merge(_RAIterPairIterator, _RAIterPairIterator, _RAIterOut, _DifferenceTp, _Compare, sequential_tag) [with _RAIterPairIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIterOut = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:1434:2, - inlined from 'void __gnu_parallel::__possibly_stable_multiway_merge::operator()(const _Seq_RAIter&, const _Seq_RAIter&, const _RAIter&, _Compare&, _DiffType) const [with _Seq_RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&); _DiffType = int]' at /usr/include/c++/13/parallel/multiway_mergesort.h:297:23, - inlined from 'void __gnu_parallel::parallel_sort_mwms_pu(_PMWMSSortingData<_RAIter>*, _Compare&) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]' at /usr/include/c++/13/parallel/multiway_mergesort.h:375:39: -/usr/include/c++/13/parallel/merge.h:178:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 +In function '_OutputIterator __gnu_parallel::__merge_advance(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics >::hashstat_t*; _RAIter2 = HashStatistics >::hashstat_t*; _OutputIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', + inlined from '_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:970:44, + inlined from '_RAIterOut __gnu_parallel::multiway_merge(_RAIterPairIterator, _RAIterPairIterator, _RAIterOut, _DifferenceTp, _Compare, sequential_tag) [with _RAIterPairIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIterOut = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:1434:2, + inlined from 'void __gnu_parallel::__possibly_stable_multiway_merge::operator()(const _Seq_RAIter&, const _Seq_RAIter&, const _RAIter&, _Compare&, _DiffType) const [with _Seq_RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&); _DiffType = int]' at /usr/include/c++/13/parallel/multiway_mergesort.h:297:23, + inlined from 'void __gnu_parallel::parallel_sort_mwms_pu(_PMWMSSortingData<_RAIter>*, _Compare&) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]' at /usr/include/c++/13/parallel/multiway_mergesort.h:375:39: +/usr/include/c++/13/parallel/merge.h:178:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 178 | return __merge_advance_movc(__begin1, __end1, __begin2, __end2, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 | __target, __max_length, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o read.o read.C -In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, - from /usr/include/boost/container_hash/hash.hpp:14, - from /usr/include/boost/functional/hash/hash.hpp:6, - from /usr/include/boost/bimap/relation/mutant_relation.hpp:29, - from /usr/include/boost/bimap/detail/bimap_core.hpp:38, - from /usr/include/boost/bimap/bimap.hpp:61, - from /usr/include/boost/bimap.hpp:13, - from ../../src/io/annotationmappings.H:36, - from ../../src/mira/multitag.H:39, - from ../../src/mira/read.H:38, - from read.C:28: -/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ -read.C: In member function 'void Read::dumpAsReadname(std::ostream&)': -read.C:1242:25: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] - 1242 | sprintf(buffer, "%x", this) ; - | ~^ ~~~~ - | | | - | | Read* - | unsigned int -read.C: In member function 'void Read::dumpAsFASTA(std::ostream&, bool, bool, bool)': -read.C:1273:25: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] - 1273 | sprintf(buffer, "%x", this) ; - | ~^ ~~~~ - | | | - | | Read* - | unsigned int -read.C: In member function 'void Read::dumpAsFASTQ(std::ostream&, bool, bool, bool)': -read.C:1357:25: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] - 1357 | sprintf(buffer, "%x", this) ; - | ~^ ~~~~ - | | | - | | Read* - | unsigned int -read.C: In member function 'void Read::dumpAsFASTAQual(std::ostream&, bool, bool, bool)': -read.C:1458:25: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] - 1458 | sprintf(buffer, "%x", this) ; - | ~^ ~~~~ - | | | - | | Read* - | unsigned int -read.C: In member function 'void Read::dumpAsCAF(std::ostream&)': -read.C:1530:25: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] - 1530 | sprintf(buffer, "%x", this) ; - | ~^ ~~~~ - | | | - | | Read* - | unsigned int -read.C: In member function 'void Read::dumpAsMAF(std::ostream&)': -read.C:1945:25: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'Read*' [-Wformat=] - 1945 | sprintf(buffer, "%x", this) ; - | ~^ ~~~~ - | | | - | | Read* - | unsigned int -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_analysis.o contig_analysis.C -In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, - from /usr/include/boost/container_hash/hash.hpp:14, - from /usr/include/boost/functional/hash/hash.hpp:6, - from /usr/include/boost/bimap/relation/mutant_relation.hpp:29, - from /usr/include/boost/bimap/detail/bimap_core.hpp:38, - from /usr/include/boost/bimap/bimap.hpp:61, - from /usr/include/boost/bimap.hpp:13, - from ../../src/io/annotationmappings.H:36, - from ../../src/mira/multitag.H:39, - from ../../src/mira/read.H:38, - from ../../src/mira/readpool.H:41, - from ../../src/mira/pcrcontainer.H:30, - from ../../src/mira/contig.H:42, - from contig_analysis.C:28: -/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:72, - from ../../src/util/misc.H:35, - from ../../src/errorhandling/errorhandling.H:37, - from ../../src/mira/read.H:34: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'static bool Read::staticInitialiser()' at read.C:230:32: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'static bool Read::staticInitialiser()' at read.C:232:34: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o ads.o ads.C In file included from /usr/include/c++/13/vector:72, from ../../src/util/misc.H:35, from ../../src/errorhandling/errorhandling.H:37, @@ -5287,7 +5313,18 @@ | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o adsfacts.o adsfacts.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o align.o align.C +In function '_OutputIterator __gnu_parallel::__merge_advance(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = HashStatistics >::hashstat_t*; _RAIter2 = HashStatistics >::hashstat_t*; _OutputIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]', + inlined from '_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter3 = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:970:44, + inlined from '_RAIterOut __gnu_parallel::multiway_merge(_RAIterPairIterator, _RAIterPairIterator, _RAIterOut, _DifferenceTp, _Compare, sequential_tag) [with _RAIterPairIterator = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIterOut = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _DifferenceTp = int; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:1434:2, + inlined from 'void __gnu_parallel::__possibly_stable_multiway_merge::operator()(const _Seq_RAIter&, const _Seq_RAIter&, const _RAIter&, _Compare&, _DiffType) const [with _Seq_RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, HashStatistics >::hashstat_t*>*, std::vector >::hashstat_t*, HashStatistics >::hashstat_t*>, std::allocator >::hashstat_t*, HashStatistics >::hashstat_t*> > > >; _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&); _DiffType = int]' at /usr/include/c++/13/parallel/multiway_mergesort.h:297:23, + inlined from 'void __gnu_parallel::parallel_sort_mwms_pu(_PMWMSSortingData<_RAIter>*, _Compare&) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >; _Compare = bool (*)(const HashStatistics >::hashstat_t&, const HashStatistics >::hashstat_t&)]' at /usr/include/c++/13/parallel/multiway_mergesort.h:375:39: +/usr/include/c++/13/parallel/merge.h:178:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >::hashstat_t*, std::vector >::hashstat_t, std::allocator >::hashstat_t> > >' changed in GCC 7.1 + 178 | return __merge_advance_movc(__begin1, __end1, __begin2, __end2, + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 179 | __target, __max_length, __comp); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_info.o assembly_info.C +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_buildcontigs.o assembly_buildcontigs.C In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, from /usr/include/boost/container_hash/hash.hpp:14, from /usr/include/boost/functional/hash/hash.hpp:6, @@ -5306,7 +5343,6 @@ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_buildcontigs.o assembly_buildcontigs.C assembly_buildcontigs.C:80: warning: "CEBUG" redefined 80 | #define CEBUG(bla) {cout << bla; cout.flush(); } | @@ -5375,20 +5411,6 @@ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -In file included from /usr/include/c++/13/vector:72, - from ../../src/mira/hdeque.H:31, - from ../../src/mira/contig.H:41: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 529 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void AssemblyInfo::zeroStats()' at assembly_info.C:145:36: -/usr/include/c++/13/bits/stl_vector.h:1034:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1034 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_vector.h:1034:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, from /usr/include/boost/container_hash/hash.hpp:14, from /usr/include/boost/functional/hash/hash.hpp:6, @@ -5408,6 +5430,20 @@ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:72, + from ../../src/mira/hdeque.H:31, + from ../../src/mira/contig.H:41: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 529 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void AssemblyInfo::zeroStats()' at assembly_info.C:145:36: +/usr/include/c++/13/bits/stl_vector.h:1034:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1034 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_vector.h:1034:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: @@ -5420,7 +5456,6 @@ /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_io.o assembly_io.C In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void AssemblyInfo::calcCurrentInfo()' at assembly_info.C:288:26: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -5482,7 +5517,14 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_io.o assembly_io.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_misc.o assembly_misc.C +In file included from /usr/include/boost/lexical_cast.hpp:26, + from ../../src/util/fileanddisk.H:43, + from assembly_io.C:28: +/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ assembly_misc.C:1871: warning: "CEBUG" redefined 1871 | #define CEBUG(bla) {cout << bla; cout.flush();} | @@ -5495,12 +5537,7 @@ assembly_misc.C:1871: note: this is the location of the previous definition 1871 | #define CEBUG(bla) {cout << bla; cout.flush();} | -In file included from /usr/include/boost/lexical_cast.hpp:26, - from ../../src/util/fileanddisk.H:43, - from assembly_io.C:28: -/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_output.o assembly_output.C In file included from /usr/include/boost/system/detail/requires_cxx11.hpp:9, from /usr/include/boost/system/detail/config.hpp:11, from /usr/include/boost/system/detail/error_category.hpp:13, @@ -5512,11 +5549,6 @@ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ -assembly_misc.C: In member function 'void Assembly::analyseOverlapHashProfile(std::vector&, std::vector::const_iterator, ADSEstimator&)': -assembly_misc.C:1873:6: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 - 1873 | void Assembly::analyseOverlapHashProfile(std::vector & profile, std::vector::const_iterator seI, ADSEstimator & adse) - | ^~~~~~~~ -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_output.o assembly_output.C In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, from /usr/include/boost/container_hash/hash.hpp:14, from /usr/include/boost/functional/hash/hash.hpp:6, @@ -5536,6 +5568,13 @@ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_pbcorrect.o assembly_pbcorrect.C +assembly_pbcorrect.C:59: warning: "CEBUG" redefined + 59 | #define CEBUG(bla) { if(docebug) {cout << bla; cout.flush();}} + | +assembly_pbcorrect.C:45: note: this is the location of the previous definition + 45 | #define CEBUG(bla) + | In file included from /usr/include/c++/13/algorithm:61, from ../../src/mira/parameters.H:36, from ../../src/mira/readpool.H:40: @@ -5553,62 +5592,6 @@ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_pbcorrect.o assembly_pbcorrect.C -assembly_pbcorrect.C:59: warning: "CEBUG" redefined - 59 | #define CEBUG(bla) { if(docebug) {cout << bla; cout.flush();}} - | -assembly_pbcorrect.C:45: note: this is the location of the previous definition - 45 | #define CEBUG(bla) - | -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_reduceskimhits.o assembly_reduceskimhits.C -assembly_reduceskimhits.C:1111: warning: "CEBUG" redefined - 1111 | #define CEBUG(bla) {cout << bla; cout.flush();} - | -assembly_reduceskimhits.C:878: note: this is the location of the previous definition - 878 | #define CEBUG(bla) - | -assembly_reduceskimhits.C:1151: warning: "CEBUG" redefined - 1151 | #define CEBUG(bla) - | -assembly_reduceskimhits.C:1111: note: this is the location of the previous definition - 1111 | #define CEBUG(bla) {cout << bla; cout.flush();} - | -assembly_reduceskimhits.C:2742: warning: "CEBUG" redefined - 2742 | #define CEBUG(bla) {cout << bla; cout.flush();} - | -assembly_reduceskimhits.C:1151: note: this is the location of the previous definition - 1151 | #define CEBUG(bla) - | -assembly_reduceskimhits.C:2760: warning: "CEBUG" redefined - 2760 | #define CEBUG(bla) - | -assembly_reduceskimhits.C:2742: note: this is the location of the previous definition - 2742 | #define CEBUG(bla) {cout << bla; cout.flush();} - | -assembly_reduceskimhits.C:2764: warning: "CEBUG" redefined - 2764 | #define CEBUG(bla) {cout << bla; cout.flush();} - | -assembly_reduceskimhits.C:2760: note: this is the location of the previous definition - 2760 | #define CEBUG(bla) - | -assembly_reduceskimhits.C:2803: warning: "CEBUG" redefined - 2803 | #define CEBUG(bla) - | -assembly_reduceskimhits.C:2764: note: this is the location of the previous definition - 2764 | #define CEBUG(bla) {cout << bla; cout.flush();} - | -assembly_reduceskimhits.C:2808: warning: "CEBUG" redefined - 2808 | #define CEBUG(bla) {cout << bla; cout.flush();} - | -assembly_reduceskimhits.C:2803: note: this is the location of the previous definition - 2803 | #define CEBUG(bla) - | -assembly_reduceskimhits.C:2887: warning: "CEBUG" redefined - 2887 | #define CEBUG(bla) - | -assembly_reduceskimhits.C:2808: note: this is the location of the previous definition - 2808 | #define CEBUG(bla) {cout << bla; cout.flush();} - | In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, from /usr/include/boost/container_hash/hash.hpp:14, from /usr/include/boost/functional/hash/hash.hpp:6, @@ -5628,25 +5611,10 @@ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, - from /usr/include/boost/container_hash/hash.hpp:14, - from /usr/include/boost/functional/hash/hash.hpp:6, - from /usr/include/boost/bimap/relation/mutant_relation.hpp:29, - from /usr/include/boost/bimap/detail/bimap_core.hpp:38, - from /usr/include/boost/bimap/bimap.hpp:61, - from /usr/include/boost/bimap.hpp:13, - from ../../src/io/annotationmappings.H:36, - from ../../src/mira/multitag.H:39, - from ../../src/mira/read.H:38, - from ../../src/mira/readpool.H:41, - from ../../src/mira/pcrcontainer.H:30, - from ../../src/mira/contig.H:42, - from ../../src/mira/assembly_info.H:33, - from assembly.H:33, - from assembly_reduceskimhits.C:27: -/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ +assembly_misc.C: In member function 'void Assembly::analyseOverlapHashProfile(std::vector&, std::vector::const_iterator, ADSEstimator&)': +assembly_misc.C:1873:6: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 + 1873 | void Assembly::analyseOverlapHashProfile(std::vector & profile, std::vector::const_iterator seI, ADSEstimator & adse) + | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = codoninfo_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -5725,6 +5693,130 @@ /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_reduceskimhits.o assembly_reduceskimhits.C +assembly_reduceskimhits.C:1111: warning: "CEBUG" redefined + 1111 | #define CEBUG(bla) {cout << bla; cout.flush();} + | +assembly_reduceskimhits.C:878: note: this is the location of the previous definition + 878 | #define CEBUG(bla) + | +assembly_reduceskimhits.C:1151: warning: "CEBUG" redefined + 1151 | #define CEBUG(bla) + | +assembly_reduceskimhits.C:1111: note: this is the location of the previous definition + 1111 | #define CEBUG(bla) {cout << bla; cout.flush();} + | +assembly_reduceskimhits.C:2742: warning: "CEBUG" redefined + 2742 | #define CEBUG(bla) {cout << bla; cout.flush();} + | +assembly_reduceskimhits.C:1151: note: this is the location of the previous definition + 1151 | #define CEBUG(bla) + | +assembly_reduceskimhits.C:2760: warning: "CEBUG" redefined + 2760 | #define CEBUG(bla) + | +assembly_reduceskimhits.C:2742: note: this is the location of the previous definition + 2742 | #define CEBUG(bla) {cout << bla; cout.flush();} + | +assembly_reduceskimhits.C:2764: warning: "CEBUG" redefined + 2764 | #define CEBUG(bla) {cout << bla; cout.flush();} + | +assembly_reduceskimhits.C:2760: note: this is the location of the previous definition + 2760 | #define CEBUG(bla) + | +assembly_reduceskimhits.C:2803: warning: "CEBUG" redefined + 2803 | #define CEBUG(bla) + | +assembly_reduceskimhits.C:2764: note: this is the location of the previous definition + 2764 | #define CEBUG(bla) {cout << bla; cout.flush();} + | +assembly_reduceskimhits.C:2808: warning: "CEBUG" redefined + 2808 | #define CEBUG(bla) {cout << bla; cout.flush();} + | +assembly_reduceskimhits.C:2803: note: this is the location of the previous definition + 2803 | #define CEBUG(bla) + | +assembly_reduceskimhits.C:2887: warning: "CEBUG" redefined + 2887 | #define CEBUG(bla) + | +assembly_reduceskimhits.C:2808: note: this is the location of the previous definition + 2808 | #define CEBUG(bla) {cout << bla; cout.flush();} + | +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_swalign.o assembly_swalign.C +In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, + from /usr/include/boost/container_hash/hash.hpp:14, + from /usr/include/boost/functional/hash/hash.hpp:6, + from /usr/include/boost/bimap/relation/mutant_relation.hpp:29, + from /usr/include/boost/bimap/detail/bimap_core.hpp:38, + from /usr/include/boost/bimap/bimap.hpp:61, + from /usr/include/boost/bimap.hpp:13, + from ../../src/io/annotationmappings.H:36, + from ../../src/mira/multitag.H:39, + from ../../src/mira/read.H:38, + from ../../src/mira/readpool.H:41, + from ../../src/mira/pcrcontainer.H:30, + from ../../src/mira/contig.H:42, + from ../../src/mira/assembly_info.H:33, + from assembly.H:33, + from assembly_reduceskimhits.C:27: +/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_consensus.o contig_consensus.C +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_covanalysis.o contig_covanalysis.C +In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, + from /usr/include/boost/container_hash/hash.hpp:14, + from /usr/include/boost/functional/hash/hash.hpp:6, + from /usr/include/boost/bimap/relation/mutant_relation.hpp:29, + from /usr/include/boost/bimap/detail/bimap_core.hpp:38, + from /usr/include/boost/bimap/bimap.hpp:61, + from /usr/include/boost/bimap.hpp:13, + from ../../src/io/annotationmappings.H:36, + from ../../src/mira/multitag.H:39, + from ../../src/mira/read.H:38, + from ../../src/mira/readpool.H:41, + from ../../src/mira/pcrcontainer.H:30, + from ../../src/mira/contig.H:42, + from ../../src/mira/assembly_info.H:33, + from ../../src/mira/assembly.H:33, + from assembly_swalign.C:28: +/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, + from /usr/include/boost/container_hash/hash.hpp:14, + from /usr/include/boost/functional/hash/hash.hpp:6, + from /usr/include/boost/bimap/relation/mutant_relation.hpp:29, + from /usr/include/boost/bimap/detail/bimap_core.hpp:38, + from /usr/include/boost/bimap/bimap.hpp:61, + from /usr/include/boost/bimap.hpp:13, + from ../../src/io/annotationmappings.H:36, + from ../../src/mira/multitag.H:39, + from ../../src/mira/read.H:38, + from ../../src/mira/readpool.H:41, + from ../../src/mira/pcrcontainer.H:30, + from contig.H:42, + from contig_consensus.C:27: +/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, + from /usr/include/boost/container_hash/hash.hpp:14, + from /usr/include/boost/functional/hash/hash.hpp:6, + from /usr/include/boost/bimap/relation/mutant_relation.hpp:29, + from /usr/include/boost/bimap/detail/bimap_core.hpp:38, + from /usr/include/boost/bimap/bimap.hpp:61, + from /usr/include/boost/bimap.hpp:13, + from ../../src/io/annotationmappings.H:36, + from ../../src/mira/multitag.H:39, + from ../../src/mira/read.H:38, + from ../../src/mira/readpool.H:41, + from ../../src/mira/pcrcontainer.H:30, + from ../../src/mira/contig.H:42, + from contig_covanalysis.C:26: +/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from ../../src/mira/hdeque.H:31, from ../../src/mira/contig.H:41: @@ -5743,7 +5835,53 @@ /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o assembly_swalign.o assembly_swalign.C +In file included from /usr/include/c++/13/bits/stl_algo.h:61, + from /usr/include/c++/13/algorithm:61, + from ../../src/mira/parameters.H:36, + from ../../src/mira/readpool.H:40: +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic > >]': +/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1812 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1918 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1812 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse > >]': +/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:72, + from ../../src/mira/hdeque.H:31, + from ../../src/mira/contig.H:41: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void Contig::collectCoverage(uint32, uint32, std::vector&)' at contig_covanalysis.C:200:24: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: @@ -5805,6 +5943,24 @@ /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/parallel/sort.h:44, + from /usr/include/c++/13/parallel/algo.h:45, + from /usr/include/c++/13/parallel/algorithm:37, + from ../../src/util/stlimprove.H:33, + from contig_covanalysis.C:29: +/usr/include/c++/13/parallel/multiway_mergesort.h: In function 'void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, _ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >; _Compare = std::less]': +/usr/include/c++/13/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 395 | parallel_sort_mwms(_RAIter __begin, _RAIter __end, + | ^~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1918 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/parallel/algo.h: In function 'void std::__parallel::sort(_RAIter, _RAIter, _Compare, _Parallelism) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const skimedges_t&, const skimedges_t&); _Parallelism = __gnu_parallel::default_parallel_tag]': /usr/include/c++/13/parallel/algo.h:1648:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1648 | sort(_RAIter __begin, _RAIter __end, _Compare __comp, @@ -5852,10 +6008,148 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, + inlined from 'void mstd::ssort(Container&) [with Container = std::vector]' at ../../src/util/stlimprove.H:122:14, + inlined from 'void Contig::calcStatsOnContainer(coverageinfo_t&, std::vector&) const' at contig_covanalysis.C:231:16: +/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1947 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1948 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1949 | __comp); + | ~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, + inlined from 'void mstd::ssort(Container&) [with Container = std::vector]' at ../../src/util/stlimprove.H:122:14, + inlined from 'void Contig::calcStatsOnContainer(coverageinfo_t&, std::vector&) const' at contig_covanalysis.C:231:16: +/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1864 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void __gnu_parallel::__parallel_sort(_RAIter, _RAIter, _Compare, multiway_mergesort_exact_tag) [with bool __stable = false; _RAIter = __gnu_cxx::__normal_iterator >; _Compare = std::less]', + inlined from 'void __gnu_parallel::__parallel_sort(_RAIter, _RAIter, _Compare, default_parallel_tag) [with bool __stable = false; _RAIter = __gnu_cxx::__normal_iterator >; _Compare = std::less]' at /usr/include/c++/13/parallel/sort.h:189:2, + inlined from 'void std::__parallel::sort(_RAIter, _RAIter, _Compare, _Parallelism) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = std::less; _Parallelism = __gnu_parallel::default_parallel_tag]' at /usr/include/c++/13/parallel/algo.h:1658:42, + inlined from 'void std::__parallel::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/parallel/algo.h:1671:11, + inlined from 'void mstd::psort(Container&) [with Container = std::vector]' at ../../src/util/stlimprove.H:136:25, + inlined from 'void Contig::calcStatsOnContainer(coverageinfo_t&, std::vector&) const' at contig_covanalysis.C:233:16: +/usr/include/c++/13/parallel/sort.h:106:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 105 | parallel_sort_mwms<__stable, true> + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 106 | (__begin, __end, __comp, __parallelism.__get_num_threads()); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'void std::__parallel::sort(_RAIter, _RAIter, _Compare, __gnu_parallel::sequential_tag) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = std::less]' at /usr/include/c++/13/parallel/algo.h:1641:46, + inlined from 'void std::__parallel::sort(_RAIter, _RAIter, _Compare, _Parallelism) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = std::less; _Parallelism = __gnu_parallel::default_parallel_tag]' at /usr/include/c++/13/parallel/algo.h:1661:8, + inlined from 'void std::__parallel::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/parallel/algo.h:1671:11, + inlined from 'void mstd::psort(Container&) [with Container = std::vector]' at ../../src/util/stlimprove.H:136:25, + inlined from 'void Contig::calcStatsOnContainer(coverageinfo_t&, std::vector&) const' at contig_covanalysis.C:233:16: +/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1947 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1948 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1949 | __comp); + | ~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'void std::__parallel::sort(_RAIter, _RAIter, _Compare, __gnu_parallel::sequential_tag) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = std::less]' at /usr/include/c++/13/parallel/algo.h:1641:46, + inlined from 'void std::__parallel::sort(_RAIter, _RAIter, _Compare, _Parallelism) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = std::less; _Parallelism = __gnu_parallel::default_parallel_tag]' at /usr/include/c++/13/parallel/algo.h:1661:8, + inlined from 'void std::__parallel::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/parallel/algo.h:1671:11, + inlined from 'void mstd::psort(Container&) [with Container = std::vector]' at ../../src/util/stlimprove.H:136:25, + inlined from 'void Contig::calcStatsOnContainer(coverageinfo_t&, std::vector&) const' at contig_covanalysis.C:233:16: +/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1864 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic > >]': +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + 1918 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic > >]': +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + 1812 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator > >; _Compare = std::less]' at /usr/include/c++/13/parallel/multiseq_selection.h:207:29: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic > >]', + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_parallel::_Lexicographic >]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator > >; _Compare = std::less]' at /usr/include/c++/13/parallel/multiseq_selection.h:208:29: +/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + 1947 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1948 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1949 | __comp); + | ~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic > >]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic > >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_parallel::_Lexicographic >]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator > >; _Compare = std::less]' at /usr/include/c++/13/parallel/multiseq_selection.h:208:29: +/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + 1864 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator > >; _Compare = std::less]' at /usr/include/c++/13/parallel/multiseq_selection.h:212:29: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair; _Sequence = std::vector, std::allocator > >; _Compare = __gnu_parallel::_LexicographicReverse >]' at /usr/include/c++/13/bits/stl_queue.h:748:13, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator > >; _Compare = std::less]' at /usr/include/c++/13/parallel/multiseq_selection.h:281:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair; _Sequence = std::vector, std::allocator > >; _Compare = __gnu_parallel::_LexicographicReverse >]' at /usr/include/c++/13/bits/stl_queue.h:748:13, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator > >; _Compare = std::less]' at /usr/include/c++/13/parallel/multiseq_selection.h:293:30: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair; _Sequence = std::vector, std::allocator > >; _Compare = __gnu_parallel::_Lexicographic >]' at /usr/include/c++/13/bits/stl_queue.h:748:13, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator > >; _Compare = std::less]' at /usr/include/c++/13/parallel/multiseq_selection.h:307:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', + inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, + inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair; _Sequence = std::vector, std::allocator > >; _Compare = __gnu_parallel::_Lexicographic >]' at /usr/include/c++/13/bits/stl_queue.h:748:13, + inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator > >; _Compare = std::less]' at /usr/include/c++/13/parallel/multiseq_selection.h:318:30: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_comp_val<__gnu_parallel::_LexicographicReverse >]': /usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 135 | __push_heap(_RandomAccessIterator __first, @@ -5950,7 +6244,11 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_consensus.o contig_consensus.C +In file included from /usr/include/c++/13/parallel/multiway_mergesort.h:40: +/usr/include/c++/13/parallel/multiway_merge.h: In function '_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = _LoserTree >; _RAIterIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RAIter3 = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = std::less]': +/usr/include/c++/13/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 491 | multiway_merge_loser_tree(_RAIterIterator __seqs_begin, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/parallel/multiway_mergesort.h:40: /usr/include/c++/13/parallel/multiway_merge.h: In function '_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = _LoserTreePointer; _RAIterIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RAIter3 = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = bool (*)(const skimedges_t&, const skimedges_t&)]': /usr/include/c++/13/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -5987,25 +6285,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 | _GLIBCXX_MOVE(__value), __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, - from /usr/include/boost/container_hash/hash.hpp:14, - from /usr/include/boost/functional/hash/hash.hpp:6, - from /usr/include/boost/bimap/relation/mutant_relation.hpp:29, - from /usr/include/boost/bimap/detail/bimap_core.hpp:38, - from /usr/include/boost/bimap/bimap.hpp:61, - from /usr/include/boost/bimap.hpp:13, - from ../../src/io/annotationmappings.H:36, - from ../../src/mira/multitag.H:39, - from ../../src/mira/read.H:38, - from ../../src/mira/readpool.H:41, - from ../../src/mira/pcrcontainer.H:30, - from ../../src/mira/contig.H:42, - from ../../src/mira/assembly_info.H:33, - from ../../src/mira/assembly.H:33, - from assembly_swalign.C:28: -/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ In function '_OutputIterator __gnu_parallel::__merge_advance(_RAIter1&, _RAIter1, _RAIter2&, _RAIter2, _OutputIterator, _DifferenceTp, _Compare) [with _RAIter1 = skimedges_t*; _RAIter2 = skimedges_t*; _OutputIterator = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = bool (*)(const skimedges_t&, const skimedges_t&)]', inlined from '_RAIter3 __gnu_parallel::__sequential_multiway_merge(_RAIterIterator, _RAIterIterator, _RAIter3, const typename std::iterator_traits::value_type::first_type>::value_type&, _DifferenceTp, _Compare) [with bool __stable = false; bool __sentinels = false; _RAIterIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RAIter3 = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = bool (*)(const skimedges_t&, const skimedges_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:970:44, inlined from '_RAIterOut __gnu_parallel::multiway_merge(_RAIterPairIterator, _RAIterPairIterator, _RAIterOut, _DifferenceTp, _Compare, sequential_tag) [with _RAIterPairIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RAIterOut = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = bool (*)(const skimedges_t&, const skimedges_t&)]' at /usr/include/c++/13/parallel/multiway_merge.h:1434:2, @@ -6016,250 +6295,15 @@ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 | __target, __max_length, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, - from /usr/include/boost/container_hash/hash.hpp:14, - from /usr/include/boost/functional/hash/hash.hpp:6, - from /usr/include/boost/bimap/relation/mutant_relation.hpp:29, - from /usr/include/boost/bimap/detail/bimap_core.hpp:38, - from /usr/include/boost/bimap/bimap.hpp:61, - from /usr/include/boost/bimap.hpp:13, - from ../../src/io/annotationmappings.H:36, - from ../../src/mira/multitag.H:39, - from ../../src/mira/read.H:38, - from ../../src/mira/readpool.H:41, - from ../../src/mira/pcrcontainer.H:30, - from contig.H:42, - from contig_consensus.C:27: -/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_covanalysis.o contig_covanalysis.C -In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, - from /usr/include/boost/container_hash/hash.hpp:14, - from /usr/include/boost/functional/hash/hash.hpp:6, - from /usr/include/boost/bimap/relation/mutant_relation.hpp:29, - from /usr/include/boost/bimap/detail/bimap_core.hpp:38, - from /usr/include/boost/bimap/bimap.hpp:61, - from /usr/include/boost/bimap.hpp:13, - from ../../src/io/annotationmappings.H:36, - from ../../src/mira/multitag.H:39, - from ../../src/mira/read.H:38, - from ../../src/mira/readpool.H:41, - from ../../src/mira/pcrcontainer.H:30, - from ../../src/mira/contig.H:42, - from contig_covanalysis.C:26: -/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/bits/stl_algo.h:61, - from /usr/include/c++/13/algorithm:61, - from ../../src/mira/parameters.H:36, - from ../../src/mira/readpool.H:40: -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic > >]': -/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1812 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1918 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1812 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_LexicographicReverse > >]': -/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:72, - from ../../src/mira/hdeque.H:31, - from ../../src/mira/contig.H:41: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void Contig::collectCoverage(uint32, uint32, std::vector&)' at contig_covanalysis.C:200:24: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/parallel/sort.h:44, - from /usr/include/c++/13/parallel/algo.h:45, - from /usr/include/c++/13/parallel/algorithm:37, - from ../../src/util/stlimprove.H:33, - from contig_covanalysis.C:29: -/usr/include/c++/13/parallel/multiway_mergesort.h: In function 'void __gnu_parallel::parallel_sort_mwms(_RAIter, _RAIter, _Compare, _ThreadIndex) [with bool __stable = false; bool __exact = true; _RAIter = __gnu_cxx::__normal_iterator >; _Compare = std::less]': -/usr/include/c++/13/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 395 | parallel_sort_mwms(_RAIter __begin, _RAIter __end, - | ^~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/parallel/multiway_mergesort.h:395:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1918 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, - inlined from 'void mstd::ssort(Container&) [with Container = std::vector]' at ../../src/util/stlimprove.H:122:14, - inlined from 'void Contig::calcStatsOnContainer(coverageinfo_t&, std::vector&) const' at contig_covanalysis.C:231:16: -/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1947 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1948 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1949 | __comp); - | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, - inlined from 'void mstd::ssort(Container&) [with Container = std::vector]' at ../../src/util/stlimprove.H:122:14, - inlined from 'void Contig::calcStatsOnContainer(coverageinfo_t&, std::vector&) const' at contig_covanalysis.C:231:16: -/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1864 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void __gnu_parallel::__parallel_sort(_RAIter, _RAIter, _Compare, multiway_mergesort_exact_tag) [with bool __stable = false; _RAIter = __gnu_cxx::__normal_iterator >; _Compare = std::less]', - inlined from 'void __gnu_parallel::__parallel_sort(_RAIter, _RAIter, _Compare, default_parallel_tag) [with bool __stable = false; _RAIter = __gnu_cxx::__normal_iterator >; _Compare = std::less]' at /usr/include/c++/13/parallel/sort.h:189:2, - inlined from 'void std::__parallel::sort(_RAIter, _RAIter, _Compare, _Parallelism) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = std::less; _Parallelism = __gnu_parallel::default_parallel_tag]' at /usr/include/c++/13/parallel/algo.h:1658:42, - inlined from 'void std::__parallel::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/parallel/algo.h:1671:11, - inlined from 'void mstd::psort(Container&) [with Container = std::vector]' at ../../src/util/stlimprove.H:136:25, - inlined from 'void Contig::calcStatsOnContainer(coverageinfo_t&, std::vector&) const' at contig_covanalysis.C:233:16: -/usr/include/c++/13/parallel/sort.h:106:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 105 | parallel_sort_mwms<__stable, true> - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 106 | (__begin, __end, __comp, __parallelism.__get_num_threads()); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'void std::__parallel::sort(_RAIter, _RAIter, _Compare, __gnu_parallel::sequential_tag) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = std::less]' at /usr/include/c++/13/parallel/algo.h:1641:46, - inlined from 'void std::__parallel::sort(_RAIter, _RAIter, _Compare, _Parallelism) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = std::less; _Parallelism = __gnu_parallel::default_parallel_tag]' at /usr/include/c++/13/parallel/algo.h:1661:8, - inlined from 'void std::__parallel::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/parallel/algo.h:1671:11, - inlined from 'void mstd::psort(Container&) [with Container = std::vector]' at ../../src/util/stlimprove.H:136:25, - inlined from 'void Contig::calcStatsOnContainer(coverageinfo_t&, std::vector&) const' at contig_covanalysis.C:233:16: -/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1947 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1948 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1949 | __comp); - | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'void std::__parallel::sort(_RAIter, _RAIter, _Compare, __gnu_parallel::sequential_tag) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = std::less]' at /usr/include/c++/13/parallel/algo.h:1641:46, - inlined from 'void std::__parallel::sort(_RAIter, _RAIter, _Compare, _Parallelism) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = std::less; _Parallelism = __gnu_parallel::default_parallel_tag]' at /usr/include/c++/13/parallel/algo.h:1661:8, - inlined from 'void std::__parallel::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/parallel/algo.h:1671:11, - inlined from 'void mstd::psort(Container&) [with Container = std::vector]' at ../../src/util/stlimprove.H:136:25, - inlined from 'void Contig::calcStatsOnContainer(coverageinfo_t&, std::vector&) const' at contig_covanalysis.C:233:16: -/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1864 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic > >]': -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - 1918 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic > >]': -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - 1812 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator > >; _Compare = std::less]' at /usr/include/c++/13/parallel/multiseq_selection.h:207:29: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic > >]', - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_parallel::_Lexicographic >]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator > >; _Compare = std::less]' at /usr/include/c++/13/parallel/multiseq_selection.h:208:29: -/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - 1947 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1948 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1949 | __comp); - | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic > >]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<__gnu_parallel::_Lexicographic > >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_parallel::_Lexicographic >]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator > >; _Compare = std::less]' at /usr/include/c++/13/parallel/multiseq_selection.h:208:29: -/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - 1864 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator > >; _Compare = std::less]' at /usr/include/c++/13/parallel/multiseq_selection.h:212:29: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair; _Sequence = std::vector, std::allocator > >; _Compare = __gnu_parallel::_LexicographicReverse >]' at /usr/include/c++/13/bits/stl_queue.h:748:13, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator > >; _Compare = std::less]' at /usr/include/c++/13/parallel/multiseq_selection.h:281:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair; _Sequence = std::vector, std::allocator > >; _Compare = __gnu_parallel::_LexicographicReverse >]' at /usr/include/c++/13/bits/stl_queue.h:748:13, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator > >; _Compare = std::less]' at /usr/include/c++/13/parallel/multiseq_selection.h:293:30: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair; _Sequence = std::vector, std::allocator > >; _Compare = __gnu_parallel::_Lexicographic >]' at /usr/include/c++/13/bits/stl_queue.h:748:13, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator > >; _Compare = std::less]' at /usr/include/c++/13/parallel/multiseq_selection.h:307:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', - inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, - inlined from 'void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair; _Sequence = std::vector, std::allocator > >; _Compare = __gnu_parallel::_Lexicographic >]' at /usr/include/c++/13/bits/stl_queue.h:748:13, - inlined from 'void __gnu_parallel::multiseq_partition(_RanSeqs, _RanSeqs, _RankType, _RankIterator, _Compare) [with _RanSeqs = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RankType = int; _RankIterator = __gnu_cxx::__normal_iterator > >; _Compare = std::less]' at /usr/include/c++/13/parallel/multiseq_selection.h:318:30: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_edit.o contig_edit.C -In file included from /usr/include/c++/13/parallel/multiway_mergesort.h:40: -/usr/include/c++/13/parallel/multiway_merge.h: In function '_RAIter3 __gnu_parallel::multiway_merge_loser_tree(_RAIterIterator, _RAIterIterator, _RAIter3, _DifferenceTp, _Compare) [with _LT = _LoserTree >; _RAIterIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _RAIter3 = __gnu_cxx::__normal_iterator >; _DifferenceTp = int; _Compare = std::less]': -/usr/include/c++/13/parallel/multiway_merge.h:491:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 491 | multiway_merge_loser_tree(_RAIterIterator __seqs_begin, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_featureinfo.o contig_featureinfo.C +contig_featureinfo.C:512: warning: "CEBUGF2" redefined + 512 | #define CEBUGF2 + | +contig_featureinfo.C:473: note: this is the location of the previous definition + 473 | #define CEBUGF2(bla) + | +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_output.o contig_output.C In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, from /usr/include/boost/container_hash/hash.hpp:14, from /usr/include/boost/functional/hash/hash.hpp:6, @@ -6277,14 +6321,6 @@ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_featureinfo.o contig_featureinfo.C -contig_featureinfo.C:512: warning: "CEBUGF2" redefined - 512 | #define CEBUGF2 - | -contig_featureinfo.C:473: note: this is the location of the previous definition - 473 | #define CEBUGF2(bla) - | -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_output.o contig_output.C In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, from /usr/include/boost/container_hash/hash.hpp:14, from /usr/include/boost/functional/hash/hash.hpp:6, @@ -6302,6 +6338,7 @@ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_pairconsistency.o contig_pairconsistency.C In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, from /usr/include/boost/container_hash/hash.hpp:14, from /usr/include/boost/functional/hash/hash.hpp:6, @@ -6319,7 +6356,6 @@ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o contig_pairconsistency.o contig_pairconsistency.C contig_pairconsistency.C:313: warning: "CEBUG" redefined 313 | #define CEBUG(bla) | @@ -6371,19 +6407,6 @@ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o dataprocessing.o dataprocessing.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o dynamic.o dynamic.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o gbf_parse.o gbf_parse.C -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o gff_parse.o gff_parse.C -In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, - from /usr/include/boost/function/detail/prologue.hpp:12, - from /usr/include/boost/function.hpp:30, - from /usr/include/boost/algorithm/string/detail/find_iterator.hpp:18, - from /usr/include/boost/algorithm/string/find_iterator.hpp:24, - from /usr/include/boost/algorithm/string/iter_find.hpp:27, - from /usr/include/boost/algorithm/string/split.hpp:16, - from /usr/include/boost/algorithm/string.hpp:23, - from gbf_parse.C:25: -/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/system/detail/requires_cxx11.hpp:9, from /usr/include/boost/system/detail/config.hpp:11, from /usr/include/boost/system/detail/error_category.hpp:13, @@ -6407,11 +6430,24 @@ from /usr/include/boost/algorithm/string/iter_find.hpp:27, from /usr/include/boost/algorithm/string/split.hpp:16, from /usr/include/boost/algorithm/string.hpp:23, - from gff_parse.C:26: + from gbf_parse.C:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o gff_parse.o gff_parse.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o gff_save.o gff_save.C +In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, + from /usr/include/boost/function/detail/prologue.hpp:12, + from /usr/include/boost/function.hpp:30, + from /usr/include/boost/algorithm/string/detail/find_iterator.hpp:18, + from /usr/include/boost/algorithm/string/find_iterator.hpp:24, + from /usr/include/boost/algorithm/string/iter_find.hpp:27, + from /usr/include/boost/algorithm/string/split.hpp:16, + from /usr/include/boost/algorithm/string.hpp:23, + from gff_parse.C:26: +/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, from /usr/include/boost/container_hash/hash.hpp:14, from /usr/include/boost/functional/hash/hash.hpp:6, @@ -6430,6 +6466,7 @@ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o maf_parse.o maf_parse.C +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o manifest.o manifest.C In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, from /usr/include/boost/container_hash/hash.hpp:14, from /usr/include/boost/functional/hash/hash.hpp:6, @@ -6448,7 +6485,6 @@ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o manifest.o manifest.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o multitag.o multitag.C In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, from /usr/include/boost/container_hash/hash.hpp:14, @@ -6462,9 +6498,10 @@ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ -/bin/bash ../../ylwrap parameters_flexer.ll lex.yy.c parameters_flexer.cc -- flex +/bin/sh ../../ylwrap parameters_flexer.ll lex.yy.c parameters_flexer.cc -- flex g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o parameters.o parameters.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o pcrcontainer.o pcrcontainer.C +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o ppathfinder.o ppathfinder.C In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function.hpp:30, @@ -6493,22 +6530,6 @@ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:72, - from ../../src/util/misc.H:35, - from ../../src/errorhandling/errorhandling.H:37, - from ../../src/mira/parameters.H:43, - from parameters.C:28: -/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const MIRAParameters&}; _Tp = MIRAParameters; _Alloc = std::allocator]': -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MIRAParameters; _Alloc = std::allocator]', - inlined from 'std::ostream& operator<<(std::ostream&, const MIRAParameters&)' at parameters.C:2229:15: -/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1289 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o ppathfinder.o ppathfinder.C In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, from /usr/include/boost/container_hash/hash.hpp:14, from /usr/include/boost/functional/hash/hash.hpp:6, @@ -6540,10 +6561,26 @@ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:72, + from ../../src/util/misc.H:35, + from ../../src/errorhandling/errorhandling.H:37, + from ../../src/mira/parameters.H:43, + from parameters.C:28: +/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const MIRAParameters&}; _Tp = MIRAParameters; _Alloc = std::allocator]': +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MIRAParameters; _Alloc = std::allocator]', + inlined from 'std::ostream& operator<<(std::ostream&, const MIRAParameters&)' at parameters.C:2229:15: +/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1289 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o readgrouplib.o readgrouplib.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o readlotstat.o readlotstat.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o readpool.o readpool.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o readpool_io.o readpool_io.C +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o sam_collect.o sam_collect.C In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, from /usr/include/boost/container_hash/hash.hpp:14, from /usr/include/boost/functional/hash/hash.hpp:6, @@ -6559,6 +6596,24 @@ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, + from /usr/include/boost/container_hash/hash.hpp:14, + from /usr/include/boost/functional/hash/hash.hpp:6, + from /usr/include/boost/bimap/relation/mutant_relation.hpp:29, + from /usr/include/boost/bimap/detail/bimap_core.hpp:38, + from /usr/include/boost/bimap/bimap.hpp:61, + from /usr/include/boost/bimap.hpp:13, + from ../../src/io/annotationmappings.H:36, + from ../../src/mira/multitag.H:39, + from ../../src/mira/read.H:38, + from ../../src/mira/readpool.H:41, + from ../../src/mira/pcrcontainer.H:30, + from ../../src/mira/contig.H:42, + from ../../src/mira/maf_parse.H:38, + from sam_collect.C:31: +/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function.hpp:30, @@ -6571,7 +6626,6 @@ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o sam_collect.o sam_collect.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o scaffolder.o scaffolder.C scaffolder.C:203: warning: "CEBUG" redefined 203 | #define CEBUG(bla) @@ -6592,30 +6646,12 @@ from ../../src/mira/readpool.H:41, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, - from ../../src/mira/maf_parse.H:38, - from sam_collect.C:31: + from scaffolder.C:28: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o seqtohash.o seqtohash.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o simplebloomfilter.o simplebloomfilter.C -In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, - from /usr/include/boost/container_hash/hash.hpp:14, - from /usr/include/boost/functional/hash/hash.hpp:6, - from /usr/include/boost/bimap/relation/mutant_relation.hpp:29, - from /usr/include/boost/bimap/detail/bimap_core.hpp:38, - from /usr/include/boost/bimap/bimap.hpp:61, - from /usr/include/boost/bimap.hpp:13, - from ../../src/io/annotationmappings.H:36, - from ../../src/mira/multitag.H:39, - from ../../src/mira/read.H:38, - from ../../src/mira/readpool.H:41, - from ../../src/mira/pcrcontainer.H:30, - from ../../src/mira/contig.H:42, - from scaffolder.C:28: -/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o skim_lowbph.o skim_lowbph.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o warnings.o warnings.C rm -f libmiraestass.a @@ -6640,7 +6676,7 @@ Making all in caf make[5]: Entering directory '/build/reproducible-path/mira-4.9.6/src/caf' g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o caf.o caf.C -/bin/bash ../../ylwrap caf_flexer.ll lex.yy.c caf_flexer.cc -- flex +/bin/sh ../../ylwrap caf_flexer.ll lex.yy.c caf_flexer.cc -- flex g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o caf_flexer.o caf_flexer.cc In file included from /usr/include/boost/lexical_cast.hpp:26, from ../../src/util/fileanddisk.H:43, @@ -6737,7 +6773,7 @@ ar cru libmemorc.a memorc.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmemorc.a -/bin/bash ../../libtool --tag=CXX --mode=link g++ -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf/ -L/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o main main.o -lmiraerrorhandling -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 +/bin/sh ../../libtool --tag=CXX --mode=link g++ -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf/ -L/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o main main.o -lmiraerrorhandling -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o main main.o -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf/ -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lmiraerrorhandling -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 -fopenmp -pthread make[5]: Leaving directory '/build/reproducible-path/mira-4.9.6/src/memorc' Making all in modules @@ -6745,6 +6781,7 @@ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_sigconex.o mod_sigconex.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_scaffold.o mod_scaffold.C g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_bait.o mod_bait.C +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_dbgreplay.o mod_dbgreplay.C In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, from /usr/include/boost/container_hash/hash.hpp:14, from /usr/include/boost/functional/hash/hash.hpp:6, @@ -6773,13 +6810,31 @@ from ../../src/mira/multitag.H:39, from ../../src/mira/read.H:38, from ../../src/mira/readpool.H:41, + from ../../src/mira/pcrcontainer.H:30, + from ../../src/mira/contig.H:42, + from ../../src/mira/assembly_info.H:33, + from ../../src/mira/assembly.H:33, + from mod_dbgreplay.C:4: +/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, + from /usr/include/boost/container_hash/hash.hpp:14, + from /usr/include/boost/functional/hash/hash.hpp:6, + from /usr/include/boost/bimap/relation/mutant_relation.hpp:29, + from /usr/include/boost/bimap/detail/bimap_core.hpp:38, + from /usr/include/boost/bimap/bimap.hpp:61, + from /usr/include/boost/bimap.hpp:13, + from ../../src/io/annotationmappings.H:36, + from ../../src/mira/multitag.H:39, + from ../../src/mira/read.H:38, + from ../../src/mira/readpool.H:41, from ../../src/mira/readpool_io.H:45, from ../../src/modules/mod_sigconex.H:35, from mod_sigconex.C:27: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_dbgreplay.o mod_dbgreplay.C In file included from /usr/include/boost/system/detail/requires_cxx11.hpp:9, from /usr/include/boost/system/detail/config.hpp:11, from /usr/include/boost/system/detail/error_category.hpp:13, @@ -6793,6 +6848,8 @@ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_diff.o mod_diff.C +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_mer.o mod_mer.C In file included from /usr/include/c++/13/algorithm:61, from ../../src/mira/parameters.H:36, from ../../src/modules/mod_sigconex.H:34: @@ -6820,7 +6877,8 @@ from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, from ../../src/mira/assembly.H:33, - from mod_dbgreplay.C:4: + from ../../src/modules/mod_diff.H:34, + from mod_diff.C:29: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ @@ -6837,8 +6895,25 @@ /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_diff.o mod_diff.C -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_mer.o mod_mer.C +In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, + from /usr/include/boost/container_hash/hash.hpp:14, + from /usr/include/boost/functional/hash/hash.hpp:6, + from /usr/include/boost/bimap/relation/mutant_relation.hpp:29, + from /usr/include/boost/bimap/detail/bimap_core.hpp:38, + from /usr/include/boost/bimap/bimap.hpp:61, + from /usr/include/boost/bimap.hpp:13, + from ../../src/io/annotationmappings.H:36, + from ../../src/mira/multitag.H:39, + from ../../src/mira/read.H:38, + from ../../src/mira/readpool.H:41, + from ../../src/mira/readpool_io.H:45, + from ../../src/modules/mod_mer.H:35, + from mod_mer.C:27: +/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_mira.o mod_mira.C +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_convert.o mod_convert.C In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const scinfo_t&, const scinfo_t&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'void MiraSCE::excon(int, char**)' at mod_sigconex.C:143:7: @@ -6859,6 +6934,8 @@ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_memestim.o mod_memestim.C +g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_tagsnp.o mod_tagsnp.C In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, from /usr/include/boost/container_hash/hash.hpp:14, from /usr/include/boost/functional/hash/hash.hpp:6, @@ -6870,34 +6947,11 @@ from ../../src/mira/multitag.H:39, from ../../src/mira/read.H:38, from ../../src/mira/readpool.H:41, - from ../../src/mira/pcrcontainer.H:30, - from ../../src/mira/contig.H:42, - from ../../src/mira/assembly_info.H:33, - from ../../src/mira/assembly.H:33, - from ../../src/modules/mod_diff.H:34, - from mod_diff.C:29: -/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_mira.o mod_mira.C -In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, - from /usr/include/boost/container_hash/hash.hpp:14, - from /usr/include/boost/functional/hash/hash.hpp:6, - from /usr/include/boost/bimap/relation/mutant_relation.hpp:29, - from /usr/include/boost/bimap/detail/bimap_core.hpp:38, - from /usr/include/boost/bimap/bimap.hpp:61, - from /usr/include/boost/bimap.hpp:13, - from ../../src/io/annotationmappings.H:36, - from ../../src/mira/multitag.H:39, - from ../../src/mira/read.H:38, - from ../../src/mira/readpool.H:41, - from ../../src/mira/readpool_io.H:45, - from ../../src/modules/mod_mer.H:35, - from mod_mer.C:27: + from ../../src/modules/mod_convert.H:34, + from mod_convert.C:29: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_convert.o mod_convert.C In file included from /usr/include/boost/system/detail/requires_cxx11.hpp:9, from /usr/include/boost/system/detail/config.hpp:11, from /usr/include/boost/system/detail/error_category.hpp:13, @@ -6909,7 +6963,6 @@ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_memestim.o mod_memestim.C mod_mira.C: In function 'void miraMain_extractContigs(int, char**)': mod_mira.C:414:10: warning: ignoring return value of 'int chdir(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 414 | chdir("../.."); @@ -6928,23 +6981,6 @@ from ../../src/mira/multitag.H:39, from ../../src/mira/read.H:38, from ../../src/mira/readpool.H:41, - from ../../src/modules/mod_convert.H:34, - from mod_convert.C:29: -/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ -g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o mod_tagsnp.o mod_tagsnp.C -In file included from /usr/include/boost/container_hash/detail/requires_cxx11.hpp:9, - from /usr/include/boost/container_hash/hash.hpp:14, - from /usr/include/boost/functional/hash/hash.hpp:6, - from /usr/include/boost/bimap/relation/mutant_relation.hpp:29, - from /usr/include/boost/bimap/detail/bimap_core.hpp:38, - from /usr/include/boost/bimap/bimap.hpp:61, - from /usr/include/boost/bimap.hpp:13, - from ../../src/io/annotationmappings.H:36, - from ../../src/mira/multitag.H:39, - from ../../src/mira/read.H:38, - from ../../src/mira/readpool.H:41, from ../../src/mira/pcrcontainer.H:30, from ../../src/mira/contig.H:42, from ../../src/mira/assembly_info.H:33, @@ -6995,6 +7031,17 @@ g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o miratest.o miratest.C Making .C out of .xxd compileinfo.itxt g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o compileinfo.itxt.xxd.o compileinfo.itxt.xxd.C +In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/iostreams/chain.hpp:36, + from /usr/include/boost/iostreams/filtering_streambuf.hpp:17, + from /usr/include/boost/iostreams/filtering_stream.hpp:22, + from ../../src/io/fastq-mira.H:31, + from miratest.C:12: +/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function.hpp:30, @@ -7007,20 +7054,9 @@ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/iostreams/chain.hpp:36, - from /usr/include/boost/iostreams/filtering_streambuf.hpp:17, - from /usr/include/boost/iostreams/filtering_stream.hpp:22, - from ../../src/io/fastq-mira.H:31, - from miratest.C:12: -/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o mira mira.o quirks.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 -/bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o miratest miratest.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 +/bin/sh ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o mira mira.o quirks.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o mira mira.o quirks.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 -fopenmp -pthread +/bin/sh ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o miratest miratest.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o miratest miratest.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 -fopenmp -pthread make[6]: Leaving directory '/build/reproducible-path/mira-4.9.6/src/progs' make[5]: Leaving directory '/build/reproducible-path/mira-4.9.6/src/progs' @@ -7060,7 +7096,7 @@ debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/mira-4.9.6' dh_auto_build --sourcedir=doc - cd doc && make -j3 "INSTALL=install --strip-program=true" + cd doc && make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mira-4.9.6/doc' Making all in docbook make[3]: Entering directory '/build/reproducible-path/mira-4.9.6/doc/docbook' @@ -7068,21 +7104,13 @@ xsltproc --nonet --xinclude --output DefinitiveGuideToMIRA.html ../../doc/docbook/book.xsl ../../doc/docbook/book_definitiveguide.xml xsltproc --nonet --xinclude --output 3rdparty_MIRA.html ../../doc/docbook/book.xsl ../../doc/docbook/book_3rdparty.xml dblatex --xslt-opts=--nonet --output=DefinitiveGuideToMIRA.pdf ../../doc/docbook/book_definitiveguide.xml -Build the book set list... dblatex --xslt-opts=--nonet --output=3rdparty_MIRA.pdf ../../doc/docbook/book_3rdparty.xml Build the book set list... -Build the listings... -XSLT stylesheets DocBook - LaTeX 2e (0.3.12) -=================================================== -No template matches copyright in chapterinfo. -No template matches year in copyright. -No template matches holder in copyright. -Build book_3rdparty.pdf -Element emph in namespace '' encountered in note, but no template matches. -Build the listings... +Build the book set list... Making .html out of _part.xml chap_bitsandpieces_part.html Making .html out of _part.xml chap_mirautils_part.html Making .html out of _part.xml chap_est_part.html +Build the listings... ERROR: xref linking to chap_dataprep has no generated link text. Error: no ID for constraint linkend: "chap_dataprep". ERROR: xref linking to chap_denovo has no generated link text. @@ -7108,10 +7136,27 @@ ERROR: xref linking to sect_ref_manifest_parameters has no generated link text. Error: no ID for constraint linkend: "sect_ref_manifest_parameters". Making .html out of _part.xml chap_faq_part.html +XSLT stylesheets DocBook - LaTeX 2e (0.3.12) +=================================================== +No template matches copyright in chapterinfo. +No template matches year in copyright. +No template matches holder in copyright. +Build book_3rdparty.pdf Making .html out of _part.xml chap_hard_part.html Making .html out of _part.xml chap_logfiles_part.html Making .html out of _part.xml chap_maf_part.html Making .html out of _part.xml chap_reference_part.html +Element emph in namespace '' encountered in note, but no template matches. +Build the listings... +Making .html out of _part.xml chap_installation_part.html +Element emph in namespace '' encountered in note, but no template matches. +Making .html out of _part.xml chap_intro_part.html +Making .html out of _part.xml chap_results_part.html +Making .html out of _part.xml chap_sra_part.html +Making .html out of _part.xml chap_seqadvice_part.html +Making .html out of _part.xml chap_bonus_part.html +Making .html out of _part.xml chap_preface_part.html +'3rdparty_MIRA.pdf' successfully built XSLT stylesheets DocBook - LaTeX 2e (0.3.12) =================================================== No template matches copyright in chapterinfo. @@ -7136,8 +7181,6 @@ No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. -'3rdparty_MIRA.pdf' successfully built -Making .html out of _part.xml chap_installation_part.html prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen @@ -7171,8 +7214,6 @@ No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. -Element emph in namespace '' encountered in note, but no template matches. -Making .html out of _part.xml chap_intro_part.html prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen prompt: default template used in programlisting or screen @@ -7267,8 +7308,6 @@ No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. -Making .html out of _part.xml chap_results_part.html -Making .html out of _part.xml chap_sra_part.html No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. @@ -7290,9 +7329,6 @@ No template matches copyright in chapterinfo. No template matches year in copyright. No template matches holder in copyright. -Making .html out of _part.xml chap_seqadvice_part.html -Making .html out of _part.xml chap_bonus_part.html -Making .html out of _part.xml chap_preface_part.html Build book_definitiveguide.pdf 'DefinitiveGuideToMIRA.pdf' successfully built make[3]: Leaving directory '/build/reproducible-path/mira-4.9.6/doc/docbook' @@ -7377,9 +7413,9 @@ make[6]: Entering directory '/build/reproducible-path/mira-4.9.6/src/progs' Making .C out of .xxd compileinfo.itxt g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o compileinfo.itxt.xxd.o compileinfo.itxt.xxd.C -/bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o mira mira.o quirks.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 +/bin/sh ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o mira mira.o quirks.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o mira mira.o quirks.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 -fopenmp -pthread -/bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o miratest miratest.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 +/bin/sh ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o miratest miratest.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o miratest miratest.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 -fopenmp -pthread make[6]: Leaving directory '/build/reproducible-path/mira-4.9.6/src/progs' make[5]: Leaving directory '/build/reproducible-path/mira-4.9.6/src/progs' @@ -7541,14 +7577,14 @@ make[6]: Entering directory '/build/reproducible-path/mira-4.9.6/src/progs' Making .C out of .xxd compileinfo.itxt g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.9.6\" -DPACKAGE_STRING=\"mira\ 4.9.6\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.9.6\" -DHAVE_OPENMP=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict__ -DHAVE_MALLOC=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -D_FILE_OFFSET_BITS=64 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -c -o compileinfo.itxt.xxd.o compileinfo.itxt.xxd.C -/bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o mira mira.o quirks.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 +/bin/sh ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o mira mira.o quirks.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o mira mira.o quirks.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 -fopenmp -pthread -/bin/bash ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o miratest miratest.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 +/bin/sh ../../libtool --tag=CXX --mode=link g++ -pthread -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -o miratest miratest.o compileinfo.itxt.xxd.o -lmiraversion -lmiramodules -lmiradebuggersupport -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 libtool: link: g++ -I/usr/include -DPUBLICQUIET -DAJ_Linux64 -g -O2 -ffile-prefix-map=/build/reproducible-path/mira-4.9.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I/usr/include -O3 -funroll-loops -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o miratest miratest.o compileinfo.itxt.xxd.o -L../version -L../modules -L../debuggersupport -L../memorc -L../io/ -L../util/ -L../errorhandling/ -L../mira -L../caf -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lmiraversion -lmiramodules -lmira -lmiraestass -lmiracaf -lmirautil -lmiradptools -lmirafio -lmiraerrorhandling -lmiradebuggersupport -lmirafmttext -lboost_thread -lboost_regex -lboost_system -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 -fopenmp -pthread make[7]: Entering directory '/build/reproducible-path/mira-4.9.6/src/progs' Making .C out of .xxd compileinfo.itxt /usr/bin/mkdir -p '/build/reproducible-path/mira-4.9.6/debian/mira-assembler/usr/bin' - /bin/bash ../../libtool --mode=install /usr/bin/install -c mira '/build/reproducible-path/mira-4.9.6/debian/mira-assembler/usr/bin' + /bin/sh ../../libtool --mode=install /usr/bin/install -c mira '/build/reproducible-path/mira-4.9.6/debian/mira-assembler/usr/bin' libtool: install: /usr/bin/install -c mira /build/reproducible-path/mira-4.9.6/debian/mira-assembler/usr/bin/mira make install-exec-hook make[8]: Entering directory '/build/reproducible-path/mira-4.9.6/src/progs' @@ -7653,15 +7689,15 @@ debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/mira-4.9.6' dh_installchangelogs src/mira/CHANGES.txt - install -m0755 -d debian/mira-doc/usr/share/doc/mira-doc - install -p -m0644 debian/.debhelper/generated/mira-doc/dh_installchangelogs.dch.trimmed debian/mira-doc/usr/share/doc/mira-doc/changelog.Debian - install -p -m0644 src/mira/CHANGES.txt debian/mira-doc/usr/share/doc/mira-doc/changelog install -m0755 -d debian/mira-assembler/usr/share/doc/mira-assembler install -p -m0644 debian/.debhelper/generated/mira-assembler/dh_installchangelogs.dch.trimmed debian/mira-assembler/usr/share/doc/mira-assembler/changelog.Debian install -p -m0644 src/mira/CHANGES.txt debian/mira-assembler/usr/share/doc/mira-assembler/changelog install -m0755 -d debian/mira-rfam-12s-rrna/usr/share/doc/mira-rfam-12s-rrna install -p -m0644 debian/.debhelper/generated/mira-rfam-12s-rrna/dh_installchangelogs.dch.trimmed debian/mira-rfam-12s-rrna/usr/share/doc/mira-rfam-12s-rrna/changelog.Debian install -p -m0644 src/mira/CHANGES.txt debian/mira-rfam-12s-rrna/usr/share/doc/mira-rfam-12s-rrna/changelog + install -m0755 -d debian/mira-doc/usr/share/doc/mira-doc + install -p -m0644 debian/.debhelper/generated/mira-doc/dh_installchangelogs.dch.trimmed debian/mira-doc/usr/share/doc/mira-doc/changelog.Debian + install -p -m0644 src/mira/CHANGES.txt debian/mira-doc/usr/share/doc/mira-doc/changelog make[1]: Leaving directory '/build/reproducible-path/mira-4.9.6' dh_installman man-recode --to-code UTF-8 --suffix .dh-new debian/mira-assembler/usr/share/man/man1/mira.1 debian/mira-assembler/usr/share/man/man1/mirabait.1 @@ -7685,73 +7721,73 @@ ln -s mira debian/mira-assembler/usr/bin/miraconvert rm -f debian/mira-assembler/usr/bin/mirabait ln -s mira debian/mira-assembler/usr/bin/mirabait - rm -f debian/mira-assembler/usr/bin/miramem - ln -s mira debian/mira-assembler/usr/bin/miramem rm -f debian/mira-assembler/usr/bin/miramer ln -s mira debian/mira-assembler/usr/bin/miramer + rm -f debian/mira-assembler/usr/bin/miramem + ln -s mira debian/mira-assembler/usr/bin/miramem dh_strip_nondeterminism Using 1707216070 as canonical time Normalizing debian/mira-rfam-12s-rrna/usr/share/mira/rfam_rrna-21-12.sls.gz using File::StripNondeterminism::handlers::gzip Using 1707216070 as canonical time - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/results_miraconvert.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/san_autoedit1.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/haf5_haf2_contigcoverage.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/pb_elasticdarkinserts02.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/ion_dh10bgoodB13.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/pb_elasticdarkinserts01.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/srmc_in_454sxahyb_1stpass.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_sroc_lenski1.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/ion_dh10bdirdepindel.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/srmc_in_454sxahyb_lastpass2.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/454_autoedit2.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/haf2_end_nomoredata.png using File::StripNondeterminism::handlers::png Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_unsc_ggc3_lenski.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_sroc_lenski2.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/pb_c227-11-clcr_res.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/results_miraconvert.png using File::StripNondeterminism::handlers::png Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/454sxa_stms_hybdenovo.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_unsc_ggcxg2_lenski.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/454_autoedit2.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_gcbias_nobias2008.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/srmc_in_454sxahyb_lastpass2.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/454sxa_hybdenovo.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/454_stacks_join.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_xmastree_lenski2.png using File::StripNondeterminism::handlers::png Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/haf_danger_join_ok.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_unsc_ggc1_lenski.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_cer_reads2.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_unsc_ggcxg1_lenski.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_sroc_lenski2.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/pb_elasticdarkinserts04.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_xmastree_lenski1.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/haf_danger_join_notok.png using File::StripNondeterminism::handlers::png Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_cer_reads1.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/454san_stmu_hybdenovo.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/pb_c227-11-clcr_res.png using File::StripNondeterminism::handlers::png Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/results_mira2other.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_wrmcsrmc_hiding_lenski1.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_unsc_ggcxg1_lenski.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/gcb99_edit.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/srmc_in_454sxahyb_lastpass1.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/ion_dh10bgoodB13.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/454_stacks_join.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/454sxa_hybdenovo.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/srmc_in_454sxahyb_1stpass.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/pb_elasticdarkinserts02.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_mcvc_lenski.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_gcbias_nobias2008.png using File::StripNondeterminism::handlers::png Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/haf2_haf5_clearshortrepeat.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/454san_stmu_hybdenovo.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/haf2_end_nomoredata.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/san_autoedit2.png using File::StripNondeterminism::handlers::png Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_gcbias_comp20082009.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/san_autoedit1.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_gcbias_bias2009.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/pb_elasticdarkinserts01.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/haf5_repend_rrna.png using File::StripNondeterminism::handlers::png Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/haf5_haf2_contigcoverage_ovals.png using File::StripNondeterminism::handlers::png Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/iontor_indelhpexample.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_unsc_ggc2_lenski.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/gcb99_edit.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_gcbias_bias2009.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_sroc_lenski1.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_cer_reads2.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/pb_elasticdarkinserts04.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_unsc_ggc4_lenski.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_unsc_ggc1_lenski.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/srmc_in_454sxahyb_lastpass1.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/ion_dh10bdirdepindel.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/haf_danger_join_notok.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/haf5_haf2_contigcoverage.png using File::StripNondeterminism::handlers::png Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/454_autoedit1.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_xmastree_lenski1.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_mcvc_lenski.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_unsc_ggcxg2_lenski.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_wrmcsrmc_hiding_lenski1.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/san_autoedit2.png using File::StripNondeterminism::handlers::png Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/pb_elasticdarkinserts03.png using File::StripNondeterminism::handlers::png - Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/haf5_repend_rrna.png using File::StripNondeterminism::handlers::png Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/gcb99_replocator.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_xmastree_lenski2.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_unsc_ggc4_lenski.png using File::StripNondeterminism::handlers::png + Normalizing debian/mira-doc/usr/share/doc/mira-assembler/bookfigures/sxa_unsc_ggc2_lenski.png using File::StripNondeterminism::handlers::png Normalizing debian/mira-doc/usr/share/doc/mira-assembler/images/warning.png using File::StripNondeterminism::handlers::png Normalizing debian/mira-doc/usr/share/doc/mira-assembler/images/note.png using File::StripNondeterminism::handlers::png dh_compress - cd debian/mira-rfam-12s-rrna cd debian/mira-assembler + cd debian/mira-rfam-12s-rrna cd debian/mira-doc - chmod a-x usr/share/doc/mira-assembler/NEWS usr/share/doc/mira-assembler/changelog usr/share/doc/mira-assembler/changelog.Debian usr/share/doc/mira-assembler/test_data/fasta_estset1/tvc_mini.fasta usr/share/doc/mira-assembler/test_data/fasta_estset1/tvc_mini.fasta.qual usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_backbone_in.gbf usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_in.solexa.fasta usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_in.solexa.fasta.qual usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_straindata_in.txt usr/share/man/man1/mira.1 usr/share/man/man1/mirabait.1 usr/share/man/man1/miraconvert.1 usr/share/man/man1/miradiff.1 usr/share/man/man1/miramem.1 usr/share/man/man1/miramer.1 - chmod a-x usr/share/doc/mira-rfam-12s-rrna/changelog usr/share/doc/mira-rfam-12s-rrna/changelog.Debian chmod a-x usr/share/doc/mira-doc/changelog usr/share/doc/mira-doc/changelog.Debian + chmod a-x usr/share/doc/mira-rfam-12s-rrna/changelog usr/share/doc/mira-rfam-12s-rrna/changelog.Debian + chmod a-x usr/share/doc/mira-assembler/NEWS usr/share/doc/mira-assembler/changelog usr/share/doc/mira-assembler/changelog.Debian usr/share/doc/mira-assembler/test_data/fasta_estset1/tvc_mini.fasta usr/share/doc/mira-assembler/test_data/fasta_estset1/tvc_mini.fasta.qual usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_backbone_in.gbf usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_in.solexa.fasta usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_in.solexa.fasta.qual usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_straindata_in.txt usr/share/man/man1/mira.1 usr/share/man/man1/mirabait.1 usr/share/man/man1/miraconvert.1 usr/share/man/man1/miradiff.1 usr/share/man/man1/miramem.1 usr/share/man/man1/miramer.1 gzip -9nf usr/share/doc/mira-rfam-12s-rrna/changelog usr/share/doc/mira-rfam-12s-rrna/changelog.Debian - gzip -9nf usr/share/doc/mira-assembler/NEWS usr/share/doc/mira-assembler/changelog usr/share/doc/mira-assembler/changelog.Debian usr/share/doc/mira-assembler/test_data/fasta_estset1/tvc_mini.fasta usr/share/doc/mira-assembler/test_data/fasta_estset1/tvc_mini.fasta.qual usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_backbone_in.gbf usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_in.solexa.fasta usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_in.solexa.fasta.qual usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_straindata_in.txt usr/share/man/man1/mira.1 usr/share/man/man1/mirabait.1 usr/share/man/man1/miraconvert.1 usr/share/man/man1/miradiff.1 usr/share/man/man1/miramem.1 usr/share/man/man1/miramer.1 gzip -9nf usr/share/doc/mira-doc/changelog usr/share/doc/mira-doc/changelog.Debian + gzip -9nf usr/share/doc/mira-assembler/NEWS usr/share/doc/mira-assembler/changelog usr/share/doc/mira-assembler/changelog.Debian usr/share/doc/mira-assembler/test_data/fasta_estset1/tvc_mini.fasta usr/share/doc/mira-assembler/test_data/fasta_estset1/tvc_mini.fasta.qual usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_backbone_in.gbf usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_in.solexa.fasta usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_in.solexa.fasta.qual usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_straindata_in.txt usr/share/man/man1/mira.1 usr/share/man/man1/mirabait.1 usr/share/man/man1/miraconvert.1 usr/share/man/man1/miradiff.1 usr/share/man/man1/miramem.1 usr/share/man/man1/miramer.1 cd '/build/reproducible-path/mira-4.9.6' cd '/build/reproducible-path/mira-4.9.6' cd '/build/reproducible-path/mira-4.9.6' @@ -7759,14 +7795,14 @@ find debian/mira-assembler ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/mira-rfam-12s-rrna ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/mira-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/mira-rfam-12s-rrna/usr/share/doc -type f -a -true -a ! -regex 'debian/mira-rfam-12s-rrna/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler/usr/share/doc -type f -a -true -a ! -regex 'debian/mira-assembler/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/mira-rfam-12s-rrna/usr/share/doc -type f -a -true -a ! -regex 'debian/mira-rfam-12s-rrna/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/mira-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/mira-rfam-12s-rrna/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/mira-assembler/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/mira-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/mira-assembler/usr/share/man debian/mira-assembler/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/mira-assembler/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/mira-rfam-12s-rrna/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/mira-rfam-12s-rrna -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/mira-assembler/usr/share/man debian/mira-assembler/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/mira-assembler/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x @@ -7799,10 +7835,6 @@ chmod 0755 -- debian/mira-rfam-12s-rrna/DEBIAN/postrm install -m0755 -d debian/mira-doc/DEBIAN dh_gencontrol - install -m0755 -d debian/mira-doc/DEBIAN - echo misc:Depends= >> debian/mira-doc.substvars - echo misc:Pre-Depends= >> debian/mira-doc.substvars - dpkg-gencontrol -pmira-doc -ldebian/changelog -Tdebian/mira-doc.substvars -cdebian/control -Pdebian/mira-doc install -m0755 -d debian/mira-rfam-12s-rrna/DEBIAN echo misc:Depends= >> debian/mira-rfam-12s-rrna.substvars echo misc:Pre-Depends= >> debian/mira-rfam-12s-rrna.substvars @@ -7812,32 +7844,36 @@ echo misc:Pre-Depends= >> debian/mira-assembler.substvars install -m0755 -d debian/.debhelper/mira-assembler/dbgsym-root/DEBIAN dpkg-gencontrol -pmira-assembler -ldebian/changelog -Tdebian/mira-assembler.substvars -cdebian/control -Pdebian/.debhelper/mira-assembler/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=mira-assembler-dbgsym "-DDepends=mira-assembler (= \${binary:Version})" "-DDescription=debug symbols for mira-assembler" -DBuild-Ids=382f732e11ab5fb817b8c9150be6fd87cddf4ad8 -DSection=debug -UMulti-Arch -UReplaces -UBreaks + install -m0755 -d debian/mira-doc/DEBIAN + echo misc:Depends= >> debian/mira-doc.substvars + echo misc:Pre-Depends= >> debian/mira-doc.substvars + dpkg-gencontrol -pmira-doc -ldebian/changelog -Tdebian/mira-doc.substvars -cdebian/control -Pdebian/mira-doc + chmod 0644 -- debian/mira-rfam-12s-rrna/DEBIAN/control chmod 0644 -- debian/mira-doc/DEBIAN/control chmod 0644 -- debian/.debhelper/mira-assembler/dbgsym-root/DEBIAN/control dpkg-gencontrol -pmira-assembler -ldebian/changelog -Tdebian/mira-assembler.substvars -cdebian/control -Pdebian/mira-assembler - chmod 0644 -- debian/mira-rfam-12s-rrna/DEBIAN/control chmod 0644 -- debian/mira-assembler/DEBIAN/control dh_md5sums + install -m0755 -d debian/mira-assembler/DEBIAN + cd debian/mira-assembler >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums install -m0755 -d debian/mira-doc/DEBIAN - cd debian/mira-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums install -m0755 -d debian/mira-rfam-12s-rrna/DEBIAN - install -m0755 -d debian/mira-assembler/DEBIAN cd debian/mira-rfam-12s-rrna >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - cd debian/mira-assembler >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/mira-rfam-12s-rrna/DEBIAN/md5sums - chmod 0644 -- debian/mira-doc/DEBIAN/md5sums chmod 0644 -- debian/mira-assembler/DEBIAN/md5sums install -m0755 -d debian/.debhelper/mira-assembler/dbgsym-root/DEBIAN + cd debian/mira-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/mira-assembler/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + chmod 0644 -- debian/mira-rfam-12s-rrna/DEBIAN/md5sums + chmod 0644 -- debian/mira-doc/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/mira-assembler/dbgsym-root/DEBIAN/md5sums dh_builddeb - dpkg-deb --root-owner-group --build debian/mira-rfam-12s-rrna .. dpkg-deb --root-owner-group --build debian/mira-assembler .. -dpkg-deb: building package 'mira-rfam-12s-rrna' in '../mira-rfam-12s-rrna_4.9.6-11_all.deb'. -dpkg-deb: building package 'mira-assembler' in '../mira-assembler_4.9.6-11_armhf.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/mira-assembler/dbgsym-root .. -dpkg-deb: building package 'mira-assembler-dbgsym' in '../mira-assembler-dbgsym_4.9.6-11_armhf.deb'. + dpkg-deb --root-owner-group --build debian/mira-rfam-12s-rrna .. dpkg-deb --root-owner-group --build debian/mira-doc .. +dpkg-deb: building package 'mira-rfam-12s-rrna' in '../mira-rfam-12s-rrna_4.9.6-11_all.deb'. +dpkg-deb: building package 'mira-assembler-dbgsym' in '../mira-assembler-dbgsym_4.9.6-11_armhf.deb'. +dpkg-deb: building package 'mira-assembler' in '../mira-assembler_4.9.6-11_armhf.deb'. dpkg-deb: building package 'mira-doc' in '../mira-doc_4.9.6-11_all.deb'. dpkg-genbuildinfo --build=binary -O../mira_4.9.6-11_armhf.buildinfo dpkg-genchanges --build=binary -O../mira_4.9.6-11_armhf.changes @@ -7846,12 +7882,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/32727/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/32727/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/12326 and its subdirectories -I: Current time: Tue Apr 23 07:10:07 -12 2024 -I: pbuilder-time-stamp: 1713899407 +I: removing directory /srv/workspace/pbuilder/32727 and its subdirectories +I: Current time: Wed Apr 24 10:07:32 +14 2024 +I: pbuilder-time-stamp: 1713902852