Diff of the two buildlogs: -- --- b1/build.log 2024-04-11 11:29:55.694799500 +0000 +++ b2/build.log 2024-04-11 11:31:02.271960502 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed May 14 05:52:12 -12 2025 -I: pbuilder-time-stamp: 1747245132 +I: Current time: Fri Apr 12 01:29:58 +14 2024 +I: pbuilder-time-stamp: 1712834998 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -29,54 +29,86 @@ dpkg-source: info: applying fix_example.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3367/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/49991/tmp/hooks/D01_modify_environment starting +debug: Running on ionos2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 11 11:30 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/49991/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/49991/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=7 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='98ca37dfac774fa085d24bfbc6b22470' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3367' - PS1='# ' - PS2='> ' + INVOCATION_ID=1832183c0ff14dbab055c767eefb52aa + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=49991 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.jVxg8ij0/pbuilderrc_s67C --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.jVxg8ij0/b1 --logfile b1/build.log baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.jVxg8ij0/pbuilderrc_LWru --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.jVxg8ij0/b2 --logfile b2/build.log baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos6-i386 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 14 17:47 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3367/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 10 11:24 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/49991/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -151,7 +183,7 @@ Get: 31 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 help2man i386 1.49.3 [198 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libtclap-dev i386 1.2.5-1+b1 [3360 kB] -Fetched 22.9 MB in 0s (74.3 MB/s) +Fetched 22.9 MB in 1s (37.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19874 files and directories currently installed.) @@ -298,7 +330,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/49991/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/49991/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_source.changes dpkg-buildpackage: info: source package baitfisher dpkg-buildpackage: info: source version 1.2.7+git20211020.de26d5c+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -308,7 +344,7 @@ debian/rules clean dh clean dh_auto_clean - make -j22 clean + make -j7 clean make[1]: Entering directory '/build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg' rm -f *.o rm -f BaitFisher-v1.2.8 @@ -321,7 +357,7 @@ dh_autoreconf dh_auto_configure dh_auto_build - make -j22 "INSTALL=install --strip-program=true" + make -j7 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c bait-fisher-helper.cpp -o bait-fisher-helper.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c bait-fisher.cpp -o bait-fisher.o @@ -334,15 +370,8 @@ CFile/CFile2_1.h:256:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 256 | register char c; | ^ -In file included from CBlastParser.h:47, - from CBaitRecord.h:37, - from bait-filter.cpp:33: -CFile/CFile2_1.h: In member function 'char CFile::getchar()': -CFile/CFile2_1.h:256:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 256 | register char c; - | ^ -In file included from CSeqNameList.h:38, - from CBlastParser.h:52: +In file included from CSequences2.h:42, + from bait-fisher-helper.cpp:32: CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&)': CSequence_Mol2_1.h:283:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 283 | register char c; @@ -413,8 +442,34 @@ CSequence_Mol2_1.h:687:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 687 | register char local_general_ambig = toupper(general_ambig); | ^~~~~~~~~~~~~~~~~~~ -In file included from CSequences2.h:42, - from bait-fisher-helper.cpp:32: +CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfProtein_toupper_removegaps(CFile&, unsigned int&)': +CSequence_Mol2_1.h:764:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 764 | register char c; + | ^ +CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_gaps2ambig(CFile&)': +CSequence_Mol2_1.h:825:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 825 | register char c; + | ^ +CSequence_Mol2_1.h: In member function 'void CSequence_Mol::readFastaSequence_generic(CFile&, processing_flag)': +CSequence_Mol2_1.h:2625:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 2625 | register bool convert_toupper_bool = (pflag & convert_toupper); // + | ^~~~~~~~~~~~~~~~~~~~ +CSequence_Mol2_1.h:2626:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 2626 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // + | ^~~~~~~~~~~~~~~~~~~~ +CSequence_Mol2_1.h:2627:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 2627 | register bool removegaps_bool = (pflag & removegaps); // + | ^~~~~~~~~~~~~~~ +CSequence_Mol2_1.h:2628:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 2628 | register bool removestars_bool = (pflag & removestars); // + | ^~~~~~~~~~~~~~~~ +In file included from CSequence_Mol2_1.h:50, + from GFF-class.h:34, + from bait-fisher.cpp:30: +CFile/CFile2_1.h: In member function 'char CFile::getchar()': +CFile/CFile2_1.h:256:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 256 | register char c; + | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&)': CSequence_Mol2_1.h:283:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 283 | register char c; @@ -427,10 +482,6 @@ CSequence_Mol2_1.h:321:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 321 | register char c; | ^ -CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfProtein_toupper_removegaps(CFile&, unsigned int&)': -CSequence_Mol2_1.h:764:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 764 | register char c; - | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:340:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 340 | register char c; @@ -438,10 +489,6 @@ CSequence_Mol2_1.h:342:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 342 | register char local_general_ambig = toupper(general_ambig); | ^~~~~~~~~~~~~~~~~~~ -CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_gaps2ambig(CFile&)': -CSequence_Mol2_1.h:825:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 825 | register char c; - | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_generic(CFile&, unsigned int&, processing_flag)': CSequence_Mol2_1.h:424:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 424 | register char c; @@ -514,27 +561,15 @@ CSequence_Mol2_1.h:2628:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2628 | register bool removestars_bool = (pflag & removestars); // | ^~~~~~~~~~~~~~~~ -CSequence_Mol2_1.h: In member function 'void CSequence_Mol::readFastaSequence_generic(CFile&, processing_flag)': -CSequence_Mol2_1.h:2625:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 2625 | register bool convert_toupper_bool = (pflag & convert_toupper); // - | ^~~~~~~~~~~~~~~~~~~~ -CSequence_Mol2_1.h:2626:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 2626 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // - | ^~~~~~~~~~~~~~~~~~~~ -CSequence_Mol2_1.h:2627:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 2627 | register bool removegaps_bool = (pflag & removegaps); // - | ^~~~~~~~~~~~~~~ -CSequence_Mol2_1.h:2628:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 2628 | register bool removestars_bool = (pflag & removestars); // - | ^~~~~~~~~~~~~~~~ -In file included from CSequence_Mol2_1.h:50, - from CSequences2.h:42, - from Csequence_cluster_and_center_sequence.h:44, - from Csequence_cluster_and_center_sequence.cpp:27: +In file included from CBlastParser.h:47, + from CBaitRecord.h:37, + from bait-filter.cpp:33: CFile/CFile2_1.h: In member function 'char CFile::getchar()': CFile/CFile2_1.h:256:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 256 | register char c; | ^ +In file included from CSeqNameList.h:38, + from CBlastParser.h:52: CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&)': CSequence_Mol2_1.h:283:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 283 | register char c; @@ -613,9 +648,23 @@ CSequence_Mol2_1.h:825:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 825 | register char c; | ^ +CSequence_Mol2_1.h: In member function 'void CSequence_Mol::readFastaSequence_generic(CFile&, processing_flag)': +CSequence_Mol2_1.h:2625:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 2625 | register bool convert_toupper_bool = (pflag & convert_toupper); // + | ^~~~~~~~~~~~~~~~~~~~ +CSequence_Mol2_1.h:2626:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 2626 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // + | ^~~~~~~~~~~~~~~~~~~~ +CSequence_Mol2_1.h:2627:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 2627 | register bool removegaps_bool = (pflag & removegaps); // + | ^~~~~~~~~~~~~~~ +CSequence_Mol2_1.h:2628:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 2628 | register bool removestars_bool = (pflag & removestars); // + | ^~~~~~~~~~~~~~~~ In file included from CSequence_Mol2_1.h:50, - from GFF-class.h:34, - from bait-fisher.cpp:30: + from CSequences2.h:42, + from Csequence_cluster_and_center_sequence.h:44, + from Csequence_cluster_and_center_sequence.cpp:27: CFile/CFile2_1.h: In member function 'char CFile::getchar()': CFile/CFile2_1.h:256:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 256 | register char c; @@ -628,27 +677,14 @@ CSequence_Mol2_1.h:300:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 300 | register char c; | ^ -CSequence_Mol2_1.h: In member function 'void CSequence_Mol::readFastaSequence_generic(CFile&, processing_flag)': -CSequence_Mol2_1.h:2625:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 2625 | register bool convert_toupper_bool = (pflag & convert_toupper); // - | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine_toupper(CFile&)': CSequence_Mol2_1.h:321:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 321 | register char c; | ^ -CSequence_Mol2_1.h:2626:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 2626 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // - | ^~~~~~~~~~~~~~~~~~~~ -CSequence_Mol2_1.h:2627:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 2627 | register bool removegaps_bool = (pflag & removegaps); // - | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:340:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 340 | register char c; | ^ -CSequence_Mol2_1.h:2628:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 2628 | register bool removestars_bool = (pflag & removestars); // - | ^~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:342:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 342 | register char local_general_ambig = toupper(general_ambig); | ^~~~~~~~~~~~~~~~~~~ @@ -774,12 +810,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/49991/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/49991/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3367 and its subdirectories -I: Current time: Wed May 14 05:52:50 -12 2025 -I: pbuilder-time-stamp: 1747245170 +I: removing directory /srv/workspace/pbuilder/49991 and its subdirectories +I: Current time: Fri Apr 12 01:31:01 +14 2024 +I: pbuilder-time-stamp: 1712835061